BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3845
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 66  VPDRTFQQYDLGW-LGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRK 124
           V    FQ +D G  + N   Y Q  PP Y L+++ VP+A++   ND LA   DVD+L  K
Sbjct: 279 VKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSK 338

Query: 125 LPNVVGKYKVPLKRFNHLDFMWAIDVKKLLYDDVVRVL 162
           LPN++   K+P   +NHLDF+WA+D  + +Y+++V ++
Sbjct: 339 LPNLIYHRKIP--PYNHLDFIWAMDAPQAVYNEIVSMM 374


>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 66  VPDRTFQQYDLGW-LGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRK 124
           V    FQ YD G  + N   Y Q +PP Y ++ + VP+A++    D LA  +DV +L  K
Sbjct: 271 VKSGKFQAYDWGSPVQNRMHYDQSQPPYYNVTAMNVPIAVWNGGKDLLADPQDVGLLLPK 330

Query: 125 LPNVVGKYKVPLKRFNHLDFMWAIDVKKLLYDDVVRVLHK 164
           LPN++   ++P   +NHLDF+WA+D  + +Y+D+V ++ +
Sbjct: 331 LPNLIYHKEIPF--YNHLDFIWAMDAPQEVYNDIVSMISE 368


>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
 pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
 pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
 pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
          Length = 380

 Score = 26.6 bits (57), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 100 VPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYK 133
           +P+ +F++ +D + P E+  VL +KL  + GK +
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVR 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,365,238
Number of Sequences: 62578
Number of extensions: 222678
Number of successful extensions: 438
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 4
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)