RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3845
(167 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 53.3 bits (128), Expect = 7e-09
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 70 TFQQYDLGWLGNWRKYGQLRPPSYRLSNV--KVPVALFYSNNDWLAPGEDVDVLSRKLPN 127
TF YD G N + YGQ+ PP++ LS + +P+ + Y D LA DV+ +LP+
Sbjct: 294 TFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS 353
Query: 128 VVGKYKVPLKRFNHLDFMWAIDVKKLLYDDVVR 160
+ L+ + H+DF+ + K+ +Y+ +++
Sbjct: 354 --KPELLYLENYGHIDFLLSTSAKEDVYNHMIQ 384
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 32.4 bits (74), Expect = 0.056
Identities = 13/63 (20%), Positives = 20/63 (31%)
Query: 66 VPDRTFQQYDLGWLGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKL 125
+ L R L+ + VPV + + +D L P E L+ L
Sbjct: 102 DLEELLAADAAALLALLRAALLDADLREALARLTVPVLVIHGEDDPLVPPEAARRLAEAL 161
Query: 126 PNV 128
P
Sbjct: 162 PGA 164
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 30.2 bits (68), Expect = 0.35
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 90 PPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVPLKRFNHLDFMWAID 149
S L ++ VP + + ++D L P + + L+ PN + V + HL + D
Sbjct: 162 DRSAALKDIDVPTLIIWGDDDPLVPPDASEKLAALFPNA--QLVV-IDDAGHLAQLEKPD 218
Query: 150 -VKKLLYD 156
V +L+
Sbjct: 219 EVAELILK 226
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 30.4 bits (69), Expect = 0.36
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 85 YGQLRPPSYRLS-NVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVPLKRF---N 140
YG L + +KVPV L + D P DVD L+ L + KV L+ +
Sbjct: 143 YGGLIADDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALED--AGVKVDLEIYPGAG 200
Query: 141 HLDFMWAIDVKKLLYD 156
H F YD
Sbjct: 201 H-GFANDRADYHPGYD 215
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.9 bits (65), Expect = 0.70
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 85 YGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVP 135
G L+ + VPV + + D + P E+ + L+ LP +
Sbjct: 90 AGDPPDALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAALPGPAELVVIE 140
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 29.3 bits (66), Expect = 0.88
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 99 KVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVPLKRFNHLDFMWAIDVKKLL 154
+VPVA S +D + + L+ KL KYKVP+ F LD + K+L
Sbjct: 383 QVPVAYIVSESDISQ-AKLIAYLTEKL----AKYKVPIA-FEKLDELPYNASGKIL 432
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 95 LSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVV 129
L ++ PV + D +AP V + +R L V
Sbjct: 326 LGDITCPVYNLAAEEDHIAPWSSVYLGARLLGGEV 360
>gnl|CDD|213495 TIGR00035, asp_race, aspartate racemase. Asparate racemases and
some close homologs of unknown function are related to
the more common glutamate racemases, but form a
distinct evolutionary branch. This model identifies
members of the aspartate racemase-related subset of
amino acid racemases [Energy metabolism, Amino acids
and amines].
Length = 229
Score = 28.6 bits (64), Expect = 1.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 33 SINGGRQCMET-------VLKTKPPTKEEEPNLFILYYLLVPDRTFQQYDLGW 78
I GG + T KTK +E P + +PDRT G
Sbjct: 5 GILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGE 57
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 27.9 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 100 VPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVPLKRFNHLD 143
PVA N+D ++ E L+ KL KYK P KR+ L
Sbjct: 352 RPVAFVVPNDDPVSVEELQAFLADKLA----KYKRP-KRWYPLP 390
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator
of transcription [Cell division and chromosome
partitioning / Transcription].
Length = 2005
Score = 28.0 bits (62), Expect = 2.6
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 8 NHVKSPVIRFLATISDPLASIRQSTSINGGRQCMETVLKT------KPPTK--EEEPNLF 59
F I D L T++ G R+ + L +P + E+
Sbjct: 164 GTTDYDRKIFRQEIKDVLEKSDPLTALFGPREVDRSFLDDALQRILRPRREVVPEDVARA 223
Query: 60 ILYYLLVPDRT 70
IL+ PDR
Sbjct: 224 ILFMADFPDRG 234
>gnl|CDD|214815 smart00774, WRKY, DNA binding domain. The WRKY domain is a DNA
binding domain found in one or two copies in a
superfamily of plant transcription factors. These
transcription factors are involved in the regulation of
various physiological programs that are unique to
plants, including pathogen defense, senescence and
trichome development. The domain is a 60 amino acid
region that is defined by the conserved amino acid
sequence WRKYGQK at its N-terminal end, together with a
novel zinc-finger-like motif. It binds specifically to
the DNA sequence motif (T)(T)TGAC(C/T), which is known
as the W box. The invariant TGAC core is essential for
function and WRKY binding.
Length = 59
Score = 25.5 bits (57), Expect = 3.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 81 NWRKYGQ 87
WRKYGQ
Sbjct: 6 QWRKYGQ 12
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 27.3 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 95 LSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPN 127
L+ +K PV + +DWL P E L+ LP
Sbjct: 302 LARIKAPVLVVGITSDWLFPPELQRALAEALPA 334
>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain.
Length = 60
Score = 25.3 bits (56), Expect = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 81 NWRKYGQ 87
NWRKYGQ
Sbjct: 6 NWRKYGQ 12
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 25.5 bits (56), Expect = 7.2
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 32 TSINGGRQCMETVLKTKPPTKEEE 55
+ +N + ++T+++ K +EEE
Sbjct: 66 SKLNDTKWYVDTLVENKKKQEEEE 89
>gnl|CDD|215484 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 26.8 bits (59), Expect = 7.3
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 47 TKPPTKEEEPNLFILY-YLLVPDRTFQQYDLGWLGNWRKYGQLRPPSYRLSNVKVPVALF 105
T EEE L Y Y + + + L ++ ++ + + P S KVP
Sbjct: 273 TGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARK-PLLESASEWKVPTTFI 331
Query: 106 YSNNDWLAP 114
Y +DW+
Sbjct: 332 YGRHDWMNY 340
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 26.4 bits (58), Expect = 8.2
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 86 GQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYK 133
G + K P+ +F+S++D + P + VL +L + K
Sbjct: 302 GGGDRVYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVN 349
>gnl|CDD|235859 PRK06765, PRK06765, homoserine O-acetyltransferase; Provisional.
Length = 389
Score = 26.2 bits (58), Expect = 9.9
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 16 RFLATISDPLASIRQSTSINGGRQCMETVLKTKPPTKEEEPNLFILYYLLVPDRTFQQYD 75
R + DP + TS E + + E + YL + Q +D
Sbjct: 258 RNASIEVDPYEKVSTLTSF-------EKEINKATYRRAELVDANHWLYLA---KAVQLFD 307
Query: 76 LGWLGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGE 116
G + + LSN++ V + D L P
Sbjct: 308 AGHGFSSLEEA--------LSNIEANVLMIPCKQDLLQPPR 340
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,900,086
Number of extensions: 807485
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 22
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)