RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3845
(167 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 114 bits (287), Expect = 3e-31
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 70 TFQQYDLGW-LGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNV 128
FQ +D G + N Y Q PP Y L+++ VP+A++ ND LA DVD+L KLPN+
Sbjct: 283 KFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNL 342
Query: 129 VGKYKVPLKRFNHLDFMWAIDVKKLLYDDVVRVLHK 164
+ K+P +NHLDF+WA+D + +Y+++V ++
Sbjct: 343 IYHRKIP--PYNHLDFIWAMDAPQAVYNEIVSMMGT 376
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 29.8 bits (67), Expect = 0.38
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 94 RLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNVVGKYKVPLKRFNHLDFMWAIDV-KK 152
L+ VK P + + D L G L L N H+ + +
Sbjct: 179 DLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDDAKHVITV---NSAHH 235
Query: 153 LLYDDVVRVLHKYNR 167
L +DV+ + + N
Sbjct: 236 ALEEDVIAFMQQENE 250
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 28.6 bits (64), Expect = 0.78
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 12/124 (9%)
Query: 4 IAFINHVKSPVIRFLATISDPLASIRQSTSINGGRQCMETVLKTKPPTKEEEPNLFILYY 63
+ P I + I+ + + + GG + + K + L Y
Sbjct: 122 LTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE--LAY 179
Query: 64 LLVPDRTFQQYDLGWLGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSR 123
P + Q +L + P +F S+ D + P + D++ +
Sbjct: 180 EKTPTASLLQLARLMAQTKA----------KLDRIVCPALIFVSDEDHVVPPGNADIIFQ 229
Query: 124 KLPN 127
+ +
Sbjct: 230 GISS 233
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 27.3 bits (61), Expect = 2.0
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 77 GWLGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVLSRKL 125
G L + + P ++ PV Y D P + V+ + + L
Sbjct: 147 GKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQAL 195
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 26.9 bits (60), Expect = 3.0
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 85 YGQLRPPSY-RLSNVKVPVALFYSNNDWLAPGEDVDVLSRKL 125
YG ++ VK P D P +++
Sbjct: 145 YGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGF 186
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 27.0 bits (59), Expect = 3.7
Identities = 6/103 (5%), Positives = 20/103 (19%), Gaps = 12/103 (11%)
Query: 38 RQCMETVLKTKPPTKEEEPNLFILY--YLLVPDRTFQQYDLGWLGNWRK------YGQLR 89
++ + + + + Y ++
Sbjct: 211 ESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKMEQAQNLLCYMNMQ 270
Query: 90 PPSYR----LSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPNV 128
+ + V+ P ++ L + L N
Sbjct: 271 TFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQNY 313
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent
solubilized, glycoprotein, ION transport, ionic channel;
NMR {Caenorhabditis elegans}
Length = 111
Score = 25.9 bits (56), Expect = 4.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 76 LGWLGNWRKYGQLRPPSYRLSNV-KVPVALFYSNNDWLAPGE 116
+ W+ N + Y LR PS +S V P+A ++ E
Sbjct: 1 MSWMQNLKNYQHLRDPSEYMSQVYGDPLAYLQETTKFVTERE 42
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 26.7 bits (59), Expect = 4.3
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 56 PNLFILYYLLVPDRTFQQYDLGWLGNWRKYGQL---RPPSYRLSNVKVPVALFYSNNDWL 112
P L+ + P + L ++R+ + K V L + ND +
Sbjct: 132 PALYKDAHWDQPKVSL--NADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 113 APGEDVDVLSRKLPNVVGKYKVPLKRFNH 141
P + + N + +H
Sbjct: 190 VPHPVMRNYADAFTNARSLTSRVIAGADH 218
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 26.5 bits (59), Expect = 4.5
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 94 RLSNVKVPVALFYSNNDWLAPGEDVDVLSRKLPN 127
L N+ +PV + ++ L E +++ +++ N
Sbjct: 183 NLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVEN 216
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 26.6 bits (59), Expect = 5.0
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 62 YYLLVPDRTFQQYDLGWLGNWRKYGQLRPPSYRLSNVKVPVALFYSNNDWLAPGEDVDVL 121
Y D ++ + + R+ G L + V+VP + +D + P E
Sbjct: 185 RYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKF 244
Query: 122 SRKLPNV 128
+ +
Sbjct: 245 LDLIDDS 251
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK
structural genomix research CO NYSGXRC, PSI-2, protein
structur initiative; 2.70A {Yersinia pestis}
Length = 294
Score = 25.6 bits (57), Expect = 8.7
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 18 LATISDP-LASIRQSTSINGGRQCMETVLK 46
++ D + I Q+T + G+Q +
Sbjct: 227 DDSLLDIAVTPIVQNTRTSVGKQIASMICD 256
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 25.7 bits (57), Expect = 9.0
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 65 LVPDRTFQQYDLGWLGNWRKYGQLRPPSY---RLSNVKVPVALFYSNNDWLAPGEDVDVL 121
L F + W+ R++ L + L V+ P + + D L P D +
Sbjct: 159 LYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFI 218
Query: 122 SRKLPN 127
+ +
Sbjct: 219 HKHVKG 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,660,435
Number of extensions: 147060
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 23
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)