RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3847
(664 letters)
>gnl|CDD|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology
to GT8 glycosyltransferase involved in
lipooligosaccharide synthesis. The catalytic domain of
LARGE is a putative glycosyltransferase. Mutations of
LARGE in mouse and human cause dystroglycanopathies, a
disease associated with hypoglycosylation of the
membrane protein alpha-dystroglycan (alpha-DG) and
consequent loss of extracellular ligand binding. LARGE
needs to both physically interact with
alpha-dystroglycan and function as a glycosyltransferase
in order to stimulate alpha-dystroglycan
hyperglycosylation. LARGE localizes to the Golgi
apparatus and contains three conserved DxD motifs. While
two of the motifs are indispensible for glycosylation
function, one is important for localization of th
eenzyme. LARGE was originally named because it covers
approximately large trunck of genomic DNA, more than
600bp long. The predicted protein structure contains an
N-terminal cytoplasmic domain, a transmembrane region, a
coiled-coil motif, and two putative catalytic domains.
This catalytic domain has closest homology to GT8
glycosyltransferase involved in lipooligosaccharide
synthesis.
Length = 280
Score = 386 bits (993), Expect = e-131
Identities = 158/227 (69%), Positives = 189/227 (83%), Gaps = 1/227 (0%)
Query: 166 PALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
PA+ FY A+ + VSWIPNKHYSG+YGL+KL L + LP L K IVLDTD+ FATDI
Sbjct: 55 PAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDI 114
Query: 226 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDIS 285
A+LW +F + +Q +GLVENQSDWYLG LWKNH+PWPALGRGFNTGVILLDL KLR +
Sbjct: 115 AELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMK 174
Query: 286 WAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY 345
W WR+ AE+ L++ L TSLADQDIFNA+I ++P+LVY LPC WNVQLSD+TRS++ CY
Sbjct: 175 WESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQ-CY 233
Query: 346 TELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELF 392
+++DLK+IHWNSPKKL+VKNKH+EFFRNLYLTFLEYDGNLLRRELF
Sbjct: 234 RDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELF 280
Score = 271 bits (695), Expect = 3e-86
Identities = 110/158 (69%), Positives = 129/158 (81%)
Query: 15 IQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVS 74
I VAIVCAGYN++R +VTL+KS+LFYR+NPLHFHLITD +A IL TLF TW VP VEVS
Sbjct: 1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVS 60
Query: 75 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
FY A+ + VSWIPNKHYSG+YGL+KL L + LP L K IVLDTD+ FATDIA+LW +
Sbjct: 61 FYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKI 120
Query: 135 FSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGF 172
F + +Q +GLVENQSDWYLG LWKNH+PWPALGRGF
Sbjct: 121 FHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGF 158
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8
(GT-8) are involved in lipopolysaccharide biosynthesis
and glycogen synthesis. Members of this family are
involved in lipopolysaccharide biosynthesis and glycogen
synthesis. GT-8 comprises enzymes with a number of known
activities: lipopolysaccharide galactosyltransferase,
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase, and
N-acetylglucosaminyltransferase. GT-8 enzymes contains a
conserved DXD motif which is essential in the
coordination of a catalytic divalent cation, most
commonly Mn2+.
Length = 246
Score = 143 bits (363), Expect = 6e-39
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
Query: 186 PNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVE 245
K + L KL LP ++P+ K + +D D++ TDI +LW Q +
Sbjct: 74 HLKRPIKIVTLTKLHLPNLVPD-YDKILYVDADILVLTDIDELW---DTPLGGQELAAAP 129
Query: 246 NQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTS 305
+ D GK ++ + A FN+GV +++L+K R ++ EK+L + S
Sbjct: 130 DPGDRREGKYYRQKRSHLAGPDYFNSGVFVVNLSKER---RNQLLKVALEKWLQSLSSLS 186
Query: 306 LADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVK 365
DQD+ N + P++V +LPC WNV+L+ RS + + K+IH+N P K K
Sbjct: 187 GGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWNK 246
Score = 110 bits (278), Expect = 2e-27
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 15 IQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVS 74
I + IV G R + L+KS+L +R PL FH++T+ ++ L + +
Sbjct: 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYE 60
Query: 75 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
D + S K + L KL LP ++P+ K + +D D++ TDI +LW
Sbjct: 61 LIPVDILDSVDSE-HLKRPIKIVTLTKLHLPNLVPD-YDKILYVDADILVLTDIDELW-- 116
Query: 135 FSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGF 172
Q + + D GK ++ + A F
Sbjct: 117 -DTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYF 153
>gnl|CDD|222439 pfam13896, Glyco_transf_49, Glycosyl-transferase for dystroglycan.
This glycosyl-transferase brings about the glycosylation
of the alpha-dystroglycan subunit. Dystroglycan is an
integral member of the skeletal muscular dystrophin
glycoprotein complex, which links dystrophin to proteins
in the extracellular matrix.
Length = 317
Score = 115 bits (291), Expect = 2e-28
Identities = 60/260 (23%), Positives = 89/260 (34%), Gaps = 76/260 (29%)
Query: 478 DVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLS---YAGNSEALRSRRNI 534
VTL + D L +E L + W+GPIS+ L+ + L Y + R +
Sbjct: 1 PVTLTTHGTYDFLDNLEPLLERWDGPISVALFAPGTDFNATLDYIAYLRHCCPASVREKV 60
Query: 535 GYHVV---------------------------------------YKEGNF--YPINTLRN 553
+H+ Y+ F YPIN RN
Sbjct: 61 TFHLYFRRSHMPEKVPLAEPALATPRDCTEFPLTLAEVLSSGANYRSAPFLTYPINVGRN 120
Query: 554 VALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTA- 612
+A T +V DID P GL P + K+V V+PAFE T
Sbjct: 121 IAREAAKTHFVLASDIDLYPSPGLVPKFLKMANRNNSK---SKRVYVLPAFEVNENSTVP 177
Query: 613 ----------------------FPASHAPTNFSRWVNAT------TPYQIEWAPDFEPYI 644
P H N+ W N++ Y+I+++ +EP+
Sbjct: 178 RDKMELLELLRNGKAIPFHHKVCPKCHTIPNYDEWFNSSENSELRVAYEIKYSDPWEPFY 237
Query: 645 VAHRDLPRYDTRFVGFGWNK 664
+ R+ P YD RF G +K
Sbjct: 238 IGTRNDPYYDERFPWEGKDK 257
>gnl|CDD|133052 cd06430, GT8_like_2, GT8_like_2 represents a subfamily of GT8 with
unknown function. A subfamily of glycosyltransferase
family 8 with unknown function: Glycosyltransferase
family 8 comprises enzymes with a number of known
activities; lipopolysaccharide galactosyltransferase
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase and inositol
1-alpha-galactosyltransferase. It is classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed.
Length = 304
Score = 76.3 bits (188), Expect = 4e-15
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 42/234 (17%)
Query: 198 KLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWK 257
+L LP +LP+ + + +DTD++F + ++W+ + Q + + +G W
Sbjct: 87 RLFLPSLLPD-VDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIG--WY 143
Query: 258 NHKPW-PALGR-GFNTGVILLDLTKLRD-----------ISWAGFWRIIAEKFLLTRLWT 304
N P G+ G N+GV+L++LT++R + W + +K+ L W
Sbjct: 144 NRFARHPYYGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITW- 202
Query: 305 SLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY------TELTDLKIIHWNS 358
DQD+ N I +P ++Y PC WN R D Y E + I+H N
Sbjct: 203 --GDQDLINIIFHHNPEMLYVFPCHWNY------RPDHCMYGSNCKAAEEEGVFILHGN- 253
Query: 359 PKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSNLNEE 412
+ + FR +Y EY FG +L Q+ L+ ELS
Sbjct: 254 --RGVYHSDKQPAFRAVYEAIREYT--------FGDDLHQSLLRPLELSLQLTV 297
Score = 39.8 bits (93), Expect = 0.003
Identities = 28/150 (18%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 15 IQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVS 74
+ +A+V G +T++KS + + + PL FH+ + + W E+
Sbjct: 1 MHLAVVACG-ERLEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWP----ELI 55
Query: 75 FYLADSVVEDVSWIPNKHYSGVYGLLK------LTLPKVLPETLAKTIVLDTDVIFATDI 128
+ + +++ P+ + + L K L LP +LP+ + + +DTD++F +
Sbjct: 56 DRKFNYTLHPITF-PSGNAAEWKKLFKPCAAQRLFLPSLLPD-VDSLLYVDTDILFLRPV 113
Query: 129 AQLWALFSRLRQRQTIGLVENQSD----WY 154
++W+ + Q + + WY
Sbjct: 114 EEIWSFLKKFNSTQLAAMAPEHEEPNIGWY 143
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8. This
family includes enzymes that transfer sugar residues to
donor molecules. Members of this family are involved in
lipopolysaccharide biosynthesis and glycogen synthesis.
This family includes Lipopolysaccharide
galactosyltransferase, lipopolysaccharide
glucosyltransferase 1, and glycogenin
glucosyltransferase.
Length = 248
Score = 64.3 bits (157), Expect = 2e-11
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 28/188 (14%)
Query: 183 SWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIG 242
+ K Y + +L L + P+ K + LD D+I D+ +L+ + +
Sbjct: 74 LQLLLKKYWSLLNYARLYLADLFPK-YDKILYLDADIIVLGDLDELFDIDL---GGKVAA 129
Query: 243 LVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRI-----IAEKF 297
VE+ + K + + FN GV++++L K WR ++
Sbjct: 130 AVEDFDRYPWFKEALSAELGIPPPCYFNAGVLVINLKK---------WREENLTEKLIEW 180
Query: 298 LLT--RLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQ--LSDNTRSDELCYTELTDLKI 353
L L L DQDI N + V LP ++NV + + E K+
Sbjct: 181 LNKNGGLLK-LGDQDILNIVFKGK---VKPLPPRYNVHGLGYYSYKKRRKLIPENP--KV 234
Query: 354 IHWNSPKK 361
IH+ P K
Sbjct: 235 IHYIGPTK 242
Score = 44.6 bits (106), Expect = 7e-05
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 19 IVCAGYNSTRSLVTLIKSILFYRKNPLH--FHLITDTVALNILQTL-FSTWSVPQVEVSF 75
++ N LIKS+L + +PLH FH++TD V+ + L V +V+V
Sbjct: 3 VLALDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTDDVSEENREKLNALGSQVSEVDVLE 62
Query: 76 YLADSVVEDV-SWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
+ ++ + + K Y + +L L + P+ K + LD D+I D+ +L+ +
Sbjct: 63 FSDIEMLSYLTLQLLLKKYWSLLNYARLYLADLFPK-YDKILYLDADIIVLGDLDELFDI 121
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the
addition of galactose or glucose residues to the
lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of
the bacterial cell surface. The members of this family
of glycosyltransferases catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface. The enzymes exhibit broad substrate
specificities. The known functions found in this family
include: Alpha-1,4-galactosyltransferase,
LOS-alpha-1,3-D-galactosyltransferase,
UDP-glucose:(galactosyl) LPS
alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl)
LPS alpha1,2-galactosyltransferase, and
UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase.
Alpha-1,4-galactosyltransferase from N. meningitidis
adds an alpha-galactose from UDP-Gal (the donor) to a
terminal lactose (the acceptor) of the LOS structure of
outer membrane. LOSs are virulence factors that enable
the organism to evade the immune system of host cells.
In E. coli, the three alpha-1,2-glycosyltransferases,
that are involved in the synthesis of the outer core
region of the LPS, are all members of this family. The
three enzymes share 40 % of sequence identity, but have
different sugar donor or acceptor specificities,
representing the structural diversity of LPS.
Length = 248
Score = 59.9 bits (146), Expect = 6e-10
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 28/189 (14%)
Query: 184 WIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGL 243
H S +L +P +LP+ K + LD D+I D+++L+ + +
Sbjct: 73 PATTDHIS-YATYYRLLIPDLLPD-YDKVLYLDADIIVLGDLSELFDI---DLGDNLLAA 127
Query: 244 V-ENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFL--LT 300
V + + + + G FN+GV+L++L K R+ I EK L +
Sbjct: 128 VRDPFIEQEKKRKRRLGGY--DDGSYFNSGVLLINLKKWRE-------ENITEKLLELIK 178
Query: 301 RLWTSL--ADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSD-----ELCYTELT-DLK 352
L DQDI NA++ + + LP ++N Q E E +
Sbjct: 179 EYGGRLIYPDQDILNAVLKDK---ILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPV 235
Query: 353 IIHWNSPKK 361
IIH+ K
Sbjct: 236 IIHYTGSDK 244
Score = 49.5 bits (119), Expect = 1e-06
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 17 VAIVCAG-YNSTRSLVTLIKSILFY-RKNPLHFHLITDTVALNILQTLFSTWSVPQVEVS 74
+ IV A N L IKSIL K F+++ D ++ + L +
Sbjct: 1 MNIVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIE 60
Query: 75 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
F D+ H S +L +P +LP+ K + LD D+I D+++L+ +
Sbjct: 61 FIKIDNDDFKFFPATTDHIS-YATYYRLLIPDLLPD-YDKVLYLDADIIVLGDLSELFDI 118
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis,
outer membrane].
Length = 325
Score = 45.4 bits (108), Expect = 6e-05
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 196 LLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLV-ENQSDWYLGK 254
L++ L + P+ K + LD DVIF D+++L+ + + + V + S +
Sbjct: 86 LVRYFLADLFPQY-DKMLYLDVDVIFCGDLSELFFI---DLEEYYLAAVRDVFSHYMKEG 141
Query: 255 LWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLW---TSLADQDI 311
+ K FN GV+L++L R+ I + L + DQDI
Sbjct: 142 ALRLEKGDLEGS-YFNAGVLLINLKLWREE------NIFEKLIELLKDKENDLLYPDQDI 194
Query: 312 FNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLK-IIHWNSPKK 361
N I + V LP ++N +++ + D I+H+ P K
Sbjct: 195 LNMIFEDR---VLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTK 242
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 18 AIV-CAGYNSTRSLVTLIKSILFY-RKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSF 75
I N I S+L + RK FH++ D + + L T + +
Sbjct: 4 PIAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVL 63
Query: 76 YLADSVVEDVSWIPNKHYS-GVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
+ D K +S V ++ L + P+ K + LD DVIF D+++L+ +
Sbjct: 64 EVIDIEPFLDYPPFTKRFSKMVL--VRYFLADLFPQY-DKMLYLDVDVIFCGDLSELFFI 120
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with
unknown function. A subfamily of glycosyltransferase
family 8 with unknown function: Glycosyltransferase
family 8 comprises enzymes with a number of known
activities; lipopolysaccharide galactosyltransferase
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase and inositol
1-alpha-galactosyltransferase. It is classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed.
Length = 257
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 17 VAIVCAGYNSTRSLVTLIKSILFYRKNP-LHFHLITDTVALNILQTLFSTWSVPQVEVS- 74
+ +V N + V + SI + L FH++TD +++ F + V
Sbjct: 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKV 60
Query: 75 -----FYLADSVVEDV------------SWIPNKHYSGVYGLLKLTLPKVLPETLAKTIV 117
F L V D Y + + LP++ P+ L K I
Sbjct: 61 LNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFYLPELFPK-LEKVIY 119
Query: 118 LDTDVIFATDIAQLWAL 134
LD DV+ D+ +LW
Sbjct: 120 LDDDVVVQKDLTELWNT 136
Score = 35.8 bits (83), Expect = 0.052
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 187 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
Y + + LP++ P+ L K I LD DV+ D+ +LW
Sbjct: 93 KPEYISLLNFARFYLPELFPK-LEKVIYLDDDVVVQKDLTELWNT 136
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 36.0 bits (83), Expect = 0.070
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 47 FHLITDTVALNILQTLFSTWSV--PQVEVSFYLADSVVEDVSWIPNKH------------ 92
FH++TD++ + S W + P + + + + ++D++ +P +
Sbjct: 345 FHVVTDSLNYPAI----SMWFLLNPPGKATIQILN--IDDMNVLPADYNSLLMKQNSHDP 398
Query: 93 -YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
Y + LP + P L K ++ D DV+ D+++LW+L
Sbjct: 399 RYISALNHARFYLPDIFPG-LNKIVLFDHDVVVQRDLSRLWSL 440
Score = 32.9 bits (75), Expect = 0.61
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 179 VEDVSWIPNKH-------------YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
++D++ +P + Y + LP + P L K ++ D DV+ D+
Sbjct: 376 IDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPG-LNKIVLFDHDVVVQRDL 434
Query: 226 AQLWAL 231
++LW+L
Sbjct: 435 SRLWSL 440
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase.
Length = 534
Score = 33.1 bits (75), Expect = 0.51
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 93 YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLW 132
Y+ V +++ LP++ P +L K + LD D++ TD++ LW
Sbjct: 326 YNSVMNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSPLW 364
Score = 33.1 bits (75), Expect = 0.51
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 190 YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLW 229
Y+ V +++ LP++ P +L K + LD D++ TD++ LW
Sbjct: 326 YNSVMNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSPLW 364
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase.
Length = 535
Score = 32.2 bits (73), Expect = 0.97
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 100 LKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
L++ +P++ P+ L K + LD DV+ D++ LW L
Sbjct: 334 LRIYIPELFPD-LNKIVFLDDDVVVQHDLSSLWEL 367
Score = 32.2 bits (73), Expect = 0.97
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 197 LKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
L++ +P++ P+ L K + LD DV+ D++ LW L
Sbjct: 334 LRIYIPELFPD-LNKIVFLDDDVVVQHDLSSLWEL 367
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate
4-alpha-galacturonosyltransferase.
Length = 657
Score = 32.2 bits (73), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 90 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
N Y + L+ LP+V P+ L K + LD D++ D+ LW++
Sbjct: 454 NPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSI 497
Score = 32.2 bits (73), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 187 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
N Y + L+ LP+V P+ L K + LD D++ D+ LW++
Sbjct: 454 NPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSI 497
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase.
Length = 533
Score = 31.8 bits (72), Expect = 1.2
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 93 YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSD 152
Y + L++ LP++ P L K + LD DV+ D++ LW + + + + +
Sbjct: 325 YISLLNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDE 383
Query: 153 WYLGKLWKNH 162
W + K ++N+
Sbjct: 384 WVMSKRFRNY 393
Score = 31.8 bits (72), Expect = 1.2
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 190 YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSD 249
Y + L++ LP++ P L K + LD DV+ D++ LW + + + + +
Sbjct: 325 YISLLNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDE 383
Query: 250 WYLGKLWKNH 259
W + K ++N+
Sbjct: 384 WVMSKRFRNY 393
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 31.6 bits (72), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 92 HYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
Y V+ LP++ + L K +VLD DV+ D++ LW L
Sbjct: 433 EYLSVFSHSHFLLPEIFKK-LKKVVVLDDDVVVQRDLSFLWNL 474
Score = 31.6 bits (72), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 189 HYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
Y V+ LP++ + L K +VLD DV+ D++ LW L
Sbjct: 433 EYLSVFSHSHFLLPEIFKK-LKKVVVLDDDVVVQRDLSFLWNL 474
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein
CysT. This model represents CysT, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysW (TIGR02140). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present [Transport and binding proteins, Anions].
Length = 265
Score = 30.0 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 280 KLRDISWAGFWRIIAEKFLLTRLWTSLADQ---DIFNAII 316
K + WAGFW+II E +L S + NA+
Sbjct: 30 KASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVF 69
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 30.2 bits (68), Expect = 3.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 90 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
N Y + L+ LP++ P+ L K + LD D++ D+ LW++
Sbjct: 436 NPKYLSILNHLRFYLPEIFPK-LNKVLFLDDDIVVQKDLTGLWSI 479
Score = 30.2 bits (68), Expect = 3.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 187 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
N Y + L+ LP++ P+ L K + LD D++ D+ LW++
Sbjct: 436 NPKYLSILNHLRFYLPEIFPK-LNKVLFLDDDIVVQKDLTGLWSI 479
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 29.4 bits (67), Expect = 5.4
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 76 YLADSVVE---DVSWIPNKHYS-------GVYGLLKLTLPKVLPETLAKTIVLDTDVIFA 125
YLA+ + E D + Y G G +K LPK+ + +VL+ D F
Sbjct: 53 YLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQF---LVLNGDTYFD 109
Query: 126 TDIAQLWALFSRLRQRQTIGLVENQ 150
D+ L A T+ L
Sbjct: 110 VDLLALLAALRASGADATMALRRVP 134
Score = 29.4 bits (67), Expect = 5.4
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 173 YLADSVVE---DVSWIPNKHYS-------GVYGLLKLTLPKVLPETLAKTIVLDTDVIFA 222
YLA+ + E D + Y G G +K LPK+ + +VL+ D F
Sbjct: 53 YLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQF---LVLNGDTYFD 109
Query: 223 TDIAQLWALFSRLRQRQTIGLVENQ 247
D+ L A T+ L
Sbjct: 110 VDLLALLAALRASGADATMALRRVP 134
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is
highly homologous to the GT 8 family. C-terminal domain
of glycoprotein glucosyltransferase (UGT). UGT is a
large glycoprotein whose C-terminus contains the
catalytic activity. This catalytic C-terminal domain is
highly homologous to Glycosyltransferase Family 8 (GT 8)
and contains the DXD motif that coordinates donor sugar
binding, characteristic for Family 8
glycosyltransferases. GT 8 proteins are retaining
enzymes based on the relative anomeric stereochemistry
of the substrate and product in the reaction catalyzed.
The non-catalytic N-terminal portion of the human UTG1
(HUGT1) has been shown to monitor the protein folding
status and activate its glucosyltransferase activity.
Length = 248
Score = 29.3 bits (66), Expect = 5.9
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 199 LTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL-----------FSRLRQRQTIGLVENQ 247
L L + P + K I +D D I TD+ +L + F R+ ++
Sbjct: 86 LFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRK-----EMDGF 140
Query: 248 SDWYLGKLWKNHKPWPALGRGFN-TGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSL 306
W G WK+H GR ++ + + ++DL + R I A R+ + L++ SL
Sbjct: 141 RFWKQG-YWKSH----LRGRPYHISALYVVDLKRFRRI--AAGDRLRGQYQQLSQDPNSL 193
Query: 307 A--DQDIFNAIISEHPYLVYTLPCQW 330
A DQD+ N + + P +++LP +W
Sbjct: 194 ANLDQDLPNNMQHQVP--IFSLPQEW 217
>gnl|CDD|197227 cd09129, PLDc_unchar2_1, Putative catalytic domain, repeat 1, of
uncharacterized phospholipase D-like proteins. Putative
catalytic domain, repeat 1, of uncharacterized
phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD
enzymes hydrolyze phospholipid phosphodiester bonds to
yield phosphatidic acid and a free polar head group.
They can also catalyze transphosphatidylation of
phospholipids to acceptor alcohols. Members of this
subfamily contain two HKD motifs (H-x-K-x(4)-D, where x
represents any amino acid residue) that characterizes
the PLD superfamily. The two motifs may be part of the
active site and may be involved in phosphatidyl group
transfer.
Length = 196
Score = 28.7 bits (65), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 273 VILLDLTKLRDI--SWAGFWRI 292
V+ DL KLRD ++G WR
Sbjct: 86 VVETDLDKLRDSNPLYSGIWRT 107
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 28.6 bits (64), Expect = 7.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 532 RNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDID 570
+ V+ E N RN L + Y+ LD D
Sbjct: 51 NDPRVRVIRLEENLGKAAA-RNAGLKLATGDYIAFLDAD 88
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase.
Length = 534
Score = 29.4 bits (66), Expect = 8.3
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 33/125 (26%)
Query: 42 KNP--LHFHLITDTVALNILQTLFS-----------------TW----SVPQVEV----- 73
K+P L FHL+TD V +Q F+ +W VP ++
Sbjct: 252 KHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSD 311
Query: 74 --SFYLADSVVEDVSWIP--NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIA 129
S+Y + S + + I N Y + L+ +P++ P L K + LD DV+ D+
Sbjct: 312 TQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPA-LEKVVFLDDDVVVQKDLT 370
Query: 130 QLWAL 134
L+++
Sbjct: 371 PLFSI 375
>gnl|CDD|234528 TIGR04264, hyperosmo_Ebh, hyperosmolarity resistance protein Ebh,
N-terminal domain. Staphylococcal protein Ebh
(extracellular matrix-binding protein homolog) is a giant
protein, sometimes over 10,000 amino acids long as
reported. This model describes a non-repetitive
amino-terminal domain of about 2400 amino acids.
Length = 2354
Score = 29.4 bits (66), Expect = 9.2
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 608 RYRTAFPASHAPTNFSRWVNATTPYQIEWAPDFEPYIVAHRD 649
+ +F ++ NF RWVN Y + W + R
Sbjct: 1081 KLTKSFTSNFDHMNFLRWVNFPNDYTVTWTSQ----KIPGRG 1118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.426
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,342,854
Number of extensions: 3375610
Number of successful extensions: 2568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2545
Number of HSP's successfully gapped: 46
Length of query: 664
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 561
Effective length of database: 6,369,140
Effective search space: 3573087540
Effective search space used: 3573087540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)