RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3847
(664 letters)
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, putative
glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus
prevotii}
Length = 276
Score = 73.0 bits (179), Expect = 2e-14
Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 18/224 (8%)
Query: 165 WPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATD 224
Y + + S+ +L + LPE L + + LD D++
Sbjct: 57 LKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINP 116
Query: 225 IAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDI 284
+ L + + + N +N+G++L++L + R+
Sbjct: 117 LDDLLRTD---ISDYILAAASHTGKTDMAN-NVNRIRLGTDTDYYNSGLLLINLKRAREE 172
Query: 285 SWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELC 344
E + L DQDI NA+ + Y + +N + +
Sbjct: 173 IDPDEIFSFVEDNHMNLLL---PDQDILNAMYGDRIYPL--DDLIYNYDARNYSSYLIRS 227
Query: 345 YTE------LTDLKIIHWNSPKK-LKVKNKHMEFFRNLYLTFLE 381
+ + ++H+ K K +++ F +LY ++
Sbjct: 228 KKQADLAWLMDHTVVLHFCGRDKPWKKNHRN--KFTSLYKHYMS 269
Score = 61.8 bits (150), Expect = 1e-10
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 17 VAIVCAG-YNSTRSLVTLIKSIL-FYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVS 74
A++ N + L+ SI +LI ++ + L+ L +
Sbjct: 6 DALLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLY 65
Query: 75 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLW 132
A + + + +++ +Y +L + LPE L + + LD D++ + L
Sbjct: 66 PIRATDDLFSFAKVTDRYPKEMY--YRLLAGEFLPENLGEILYLDPDMLVINPLDDLL 121
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 67.9 bits (166), Expect = 2e-12
Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 26/203 (12%)
Query: 172 FYLADSVVEDVSWIPNKHYS-GVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWA 230
F + + +H S Y +L L + + + K + LD DV+ + LW
Sbjct: 61 FIDVNPEDFAGFPLNIRHISITTY--ARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWD 117
Query: 231 LFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFW 290
L ++ + + +K FN GV+L++L K R
Sbjct: 118 T--DLGDNWLGASIDLFVERQ--EGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMS 173
Query: 291 RIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTD 350
E++ + DQDI N + V ++N ++ + TD
Sbjct: 174 SEWVEQYKDVMQY---QDQDILNGLFKGG---VCYANSRFNFMPTNYAFMANWFASRHTD 227
Query: 351 L------------KIIHWNSPKK 361
+ H+ P K
Sbjct: 228 PLYRDRTNTVMPVAVSHYCGPAK 250
Score = 54.0 bits (130), Expect = 5e-08
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 19 IVCAG-YNSTRSLVTLIKSILF-YRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFY 76
IV A N L KS+ + + FH++ ++ + + + F
Sbjct: 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI 62
Query: 77 LADSVVEDVSWIPNKHYS-GVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 134
+ + +H S Y +L L + + + K + LD DV+ + LW
Sbjct: 63 DVNPEDFAGFPLNIRHISITTY--ARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWDT 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 1e-09
Identities = 83/522 (15%), Positives = 156/522 (29%), Gaps = 170/522 (32%)
Query: 62 LFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLL---KLTLPKVLPETLAKTIVL 118
+F+ ++V +++ L +++E P K + G+L K +A + L
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL---RPAK-NVLIDGVLGSGK--------TWVALDVCL 172
Query: 119 DTDV-------IF----------ATDIAQLWALFSRLRQ--------RQTIGLVENQSDW 153
V IF T + L L ++ I L +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 154 YLGKLWKNHKPWP-ALGRGFYLAD-----------------------SVVEDVSWIPNKH 189
L +L K KP+ L L + V + +S H
Sbjct: 233 ELRRLLK-SKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 190 YSGVYGLLKLTLPKVLPETLAKTIVLDTDV---------IFATDIAQLWALFSRLRQRQT 240
S + + LT +V L K LD ++ +
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-- 343
Query: 241 IGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRI-------- 292
W WK+ L + + +L+ + R + F R+
Sbjct: 344 ---------W---DNWKHVNCD-KLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAH 386
Query: 293 IAEKFLLTRLWTSLADQDIFN--------AIISEHP-YLVYTLPCQWNVQLSDNTRSDEL 343
I LL+ +W + D+ +++ + P ++P ++ L + +
Sbjct: 387 IPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKLENE 442
Query: 344 CYTELTDLKIIHWNSPKKLKVKNK---------------HM---------EFFRNLYL-- 377
L + H+N PK + H+ FR ++L
Sbjct: 443 --YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 378 TFLEYDGNLLRRELFGCNLTQT---TLQQAEL--SNLNEEDPCYDLRRSKLTSLRTHLYF 432
FLE +R + N + + TLQQ + + + DP Y+ + L F
Sbjct: 501 RFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL------VNAILDF 551
Query: 433 LEYEYEASSDGNDVTLVAQLSMDRLQMVEINPNNVDEYEASS 474
L + E + L+ D L++ + + EA
Sbjct: 552 LP-KIEEN-------LICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 55.6 bits (133), Expect = 5e-08
Identities = 88/636 (13%), Positives = 186/636 (29%), Gaps = 202/636 (31%)
Query: 108 LPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPW-- 165
+P+++ +D ++ ++ LF L +Q E ++ ++ + + +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEVLRINYKFLM 95
Query: 166 ---------PALGRGFYLA--DSVVEDVSWIPNKHYSGVYGLLKLT--LPKVLPE----- 207
P++ Y+ D + D + S + LKL L ++ P
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 208 ---------TLAKTIVLDTDV-------IF----------ATDIAQLWALFSRLRQ---- 237
+A + L V IF T + L L ++
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 238 ----RQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRII 293
I L + L +L K+ + +++L ++ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLVLL-----NV-QN--AKAW 259
Query: 294 AEKF-------LLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSD---------N 337
F L TR + + + + + + + + +
Sbjct: 260 -NAFNLSCKILLTTR------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 338 TRSDEL----CYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFG 393
R +L T L II + ++ + +++ + D
Sbjct: 313 CRPQDLPREVLTTNPRRLSII----AESIRDGLATWDNWKH-----VNCD---------- 353
Query: 394 CNLTQTTLQQAELSNLNEED--PCYD----LRRS-KLTSLRTHLYFLEYEYEASSDGNDV 446
TT+ ++ L+ L + +D S + ++ L + + DV
Sbjct: 354 ---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS------DV 404
Query: 447 TLVAQLSMDRLQMVEINPNNV--------DEYEASSDGNDVTLVAQLSMDRLQMVEMLFK 498
+V +VE P E + + N+ L + +D + +
Sbjct: 405 MVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLE-NEYALHRSI-VDHYNIPKTFDS 461
Query: 499 HWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQ 558
P L Y F S+ IG+H L+N+ +
Sbjct: 462 DDLIPPYLDQY--------FYSH------------IGHH-------------LKNIEHPE 488
Query: 559 VST--PYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPAS 616
T VF LD F L+ IR + +L + ++ +
Sbjct: 489 RMTLFRMVF-LDFRF---------LEQKIRHDSTAWNASGSIL--NTLQQLKFYKPYICD 536
Query: 617 HAPTNFSRWVNATTPYQIEWAPDFEPYIVA--HRDL 650
+ P + R VNA +++ P E ++ + DL
Sbjct: 537 NDPK-YERLVNAI----LDFLPKIEENLICSKYTDL 567
Score = 35.6 bits (81), Expect = 0.070
Identities = 55/338 (16%), Positives = 104/338 (30%), Gaps = 74/338 (21%)
Query: 352 KIIHWNSPKKLK-VKNKHMEFFRNLYLTFLEYDGNLLR--------RELFGCNLT-QTTL 401
I+ + K ++ L+ E D +++ LF L+ Q +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 402 QQAELSNLNEEDPCYDLRRSKLT--SLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQM 459
Q + + + Y S + + + Y + ND + A+ ++ RLQ
Sbjct: 79 VQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 460 V--------EINPN-NVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFK-HWEGPISLTLY 509
E+ P NV G + + + +M FK W ++L
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFW---LNLKNC 192
Query: 510 MSDA---EAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALN-QVSTPYVF 565
S E Q L Y + SR + ++ I++++ S PY
Sbjct: 193 NSPETVLEMLQKLLYQIDPN-WTSRSDHSSNI------KLRIHSIQAELRRLLKSKPYEN 245
Query: 566 -LLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPASHAPTNFSR 624
LL + + + + + K+L+ T R++ T+F
Sbjct: 246 CLLVLLNV-------QNAKAWNAFN----LSCKILL-----TTRFKQV-------TDFLS 282
Query: 625 WVNATTPYQIEWAPDFEP---------YI-VAHRDLPR 652
T + P Y+ +DLPR
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-05
Identities = 67/366 (18%), Positives = 113/366 (30%), Gaps = 111/366 (30%)
Query: 24 YNSTRSLVT-LIKSI---LF------YRKNPLHFHLITDTVALNILQTLFSTWSVPQVEV 73
Y + LV LIK L + LNIL+ L + + P +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ------GLNILEWLENPSNTPDKD- 229
Query: 74 SFYLADSVVEDVSWIPN------KHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATD 127
YL S+ +S P HY LL T P L L ++ A
Sbjct: 230 --YLL-SI--PISC-PLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVA 282
Query: 128 IAQL--WALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWI 185
IA+ W F R+ I ++ +++G + ++ +P L S++ED
Sbjct: 283 IAETDSWESFFVS-VRKAITVL-----FFIG--VRCYEAYPNT----SLPPSILED---- 326
Query: 186 PNKHYSG-------VYGLLKLTLPKV-------LPETLAKTIVL---DTDVIFATDIAQL 228
++ G + L + + LP I L +++ + L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 229 WALFSRLR-QRQTIGLVENQSDWYLGKLWKNHKPW----PALGRGFN------------- 270
+ L LR + GL +QS P+ F
Sbjct: 387 YGLNLTLRKAKAPSGL--DQS----------RIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 271 -TGVILLDLTKLRDISWAGFWRIIAEKFLL-----TRLWTSLADQDIFNAIISEHPYLVY 324
+ +I DL K ++S+ K + T + L +I +
Sbjct: 435 ASDLINKDLVK-NNVSFNA-------KDIQIPVYDTFDGSDLRVLS--GSISERIVDCII 484
Query: 325 TLPCQW 330
LP +W
Sbjct: 485 RLPVKW 490
Score = 35.4 bits (81), Expect = 0.084
Identities = 96/608 (15%), Positives = 183/608 (30%), Gaps = 219/608 (36%)
Query: 129 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPW-PA--LGRGF--YLADSVVEDVS 183
+ + S+L+++ L E + +P PA +G+ F Y++ V
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEG-----FAADDEPTTPAELVGK-FLGYVSSLVEPS-- 75
Query: 184 WIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGL 243
+ V L L L E + + DI AL ++L Q L
Sbjct: 76 --KVGQFDQV---LNL----CLTE-------FENCYLEGNDIH---ALAAKLLQENDTTL 116
Query: 244 VENQS---DWYLGKLWKNH----KPWPALGRGFNTG---VILL--------D-LTKLRDI 284
V+ + ++ ++ K AL R G ++ + D +LRD+
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 285 -----SWAGFWRIIAEKFLLTRLWTSLADQDIFNA---IIS--EHP-------YLVY--- 324
G + + L + T+L + +F I+ E+P YL+
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 325 TLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVKNK----HME---------- 370
+ P +QL+ Y + K++ + P +L+ K H +
Sbjct: 237 SCPLIGVIQLA--------HY--VVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 371 ------FFRNL--YLTFLEYDGNLLR-RELFG-CNLTQTTLQQAELSNLNEEDPCY---- 416
FF ++ +T L + G +R E + +L + L+ + NE P
Sbjct: 286 TDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSL--ENNEGVPSPMLSI 341
Query: 417 -DLRRSKLTS----LRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVEIN-PNNVDEY 470
+L + ++ +HL G V ++S+ +N N+
Sbjct: 342 SNLTQEQVQDYVNKTNSHL----------PAGKQV----EISL-------VNGAKNL--- 377
Query: 471 EASSDGNDVTLVAQLSMDRLQMVEMLFKHWEG-PISLTLYMSDAEAQQFLSYAGNSEALR 529
V V+ G P SL + S S
Sbjct: 378 --------V--VS------------------GPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 530 SRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLY--PYLKSSIRS 587
S R + + F P+ ++P + L +
Sbjct: 410 SERKLKFSNR-----FLPV-----------ASP---------------FHSHLLVPASDL 438
Query: 588 M--DMHGHG---GKKVLVVPAFET------QRYRTAFPASHAPTNFSRWVN--ATTPYQI 634
+ D+ + K + +P ++T + + V TT ++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 635 EWAPDFEP 642
DF P
Sbjct: 499 THILDFGP 506
Score = 35.0 bits (80), Expect = 0.087
Identities = 56/336 (16%), Positives = 92/336 (27%), Gaps = 130/336 (38%)
Query: 15 IQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTW-------S 67
+ A+ A +S S F+ + LF + +
Sbjct: 277 LVTAVAIAETDSWES---------FFV------------SVRKAITVLF--FIGVRCYEA 313
Query: 68 VPQVEVSFYLADSVVEDVSWIPNKHYS---GVYGLLKLTLPKV-------LPETLAKTIV 117
P + + + +E+ +P S + L + + LP I
Sbjct: 314 YPNTSLPPSILEDSLENNEGVP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 118 L---DTDVIFATDIAQLWALFSRLR-QRQTIGLVENQSDWYLGKLWKNHKPW----PALG 169
L +++ + L+ L LR + GL +QS P+
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQS----------RIPFSERKLKFS 417
Query: 170 RGF----------YLADS---VVED-----VSW------IPNKHYSGVY----GL-LKLT 200
F L + + +D VS+ IP VY G L+
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP------VYDTFDGSDLR-V 470
Query: 201 LPKVLPETLAKTIVLDTDVIF---ATDIAQLWAL-FSRLRQRQTIGLVENQSDWYLGKLW 256
L + E + I+ + T L F G LG L
Sbjct: 471 LSGSISERIVDCII--RLPVKWETTTQFKATHILDFGP-------GGASG-----LGVLT 516
Query: 257 KNHKPWPALGRGFNTGVIL---LDLTKLRDISWAGF 289
+K G G VI+ LD+ D GF
Sbjct: 517 HRNKD----GTG--VRVIVAGTLDINPDDDY---GF 543
Score = 34.3 bits (78), Expect = 0.18
Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 72/182 (39%)
Query: 101 KLTLPKVLPETLAKTIVL----DTDVIFATDIAQ----LW--ALFSRLRQRQTIGLVENQ 150
KL K+ E + + ++ AT Q L A F L+ + GL+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK---GLI--P 1754
Query: 151 SDWYL-GKLWKNHKPWPALG-----------------------RGFYLADSVVEDVSWIP 186
+D G H +LG RG + +V D
Sbjct: 1755 ADATFAG-----H----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD----- 1800
Query: 187 NKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVE- 245
+ YG++ + P +A + + + ++T LVE
Sbjct: 1801 -ELGRSNYGMI-----AINPGRVAASFSQEALQYVVERVG-----------KRTGWLVEI 1843
Query: 246 -N 246
N
Sbjct: 1844 VN 1845
Score = 29.6 bits (66), Expect = 4.7
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 32/92 (34%)
Query: 2 SSDEEPVIPTCE--------VIQVA--------IVCAGYNSTRSLVTLIKSILFYRKNPL 45
S +E + E ++++ V AG R+L T+ +L + K
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG--DLRALDTVTN-VLNFIK--- 1873
Query: 46 HFHLITDTVALNI-LQTLFSTWSVPQVEVSFY 76
I + L + S+ +VE +
Sbjct: 1874 ---------LQKIDIIELQKSLSLEEVEGHLF 1896
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.52A {Salmonella enterica subsp}
Length = 148
Score = 30.0 bits (68), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 105 PKVLPETLAKTIVLDTDVIFATDIAQL 131
P PE K L +DV+F + + L
Sbjct: 7 PAPAPEVQTKHFTLKSDVLFNFNKSTL 33
Score = 30.0 bits (68), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 202 PKVLPETLAKTIVLDTDVIFATDIAQL 228
P PE K L +DV+F + + L
Sbjct: 7 PAPAPEVQTKHFTLKSDVLFNFNKSTL 33
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein;
beta helix, unknown function; 2.40A {Cyanothece}
Length = 150
Score = 30.1 bits (69), Expect = 1.2
Identities = 10/39 (25%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 386 LLRRELFGCNLTQTTLQQAELSNLNEEDPCYDLRRSKLT 424
L RE GCNL L + S L
Sbjct: 10 ELERECVGCNLEGVNLPRENFGLKYRI----PRSSSPLV 44
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate;
2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Length = 598
Score = 29.9 bits (66), Expect = 2.8
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 606 TQRYRTAFPASHAPTNFSRWV---NATTPYQIEWAPDFEPYIVAHRDLPRY 653
+QR R A P T+ ++ +A E I RDL +
Sbjct: 281 SQRVRIATPGRDFMTDLKVFLDVQDAADFRGFESYEPGARLIRTIRDLATW 331
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 30.2 bits (67), Expect = 3.0
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 470 YEASSDGNDVTL--VAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEA 527
+AS G+ V + V+ S ++ + G + +L Y
Sbjct: 37 SKASHAGSRVVMRQVSHESEPIFDLILAIHSKLNGKYPEDDITQKQQTGLYLEYVS---- 92
Query: 528 LRSRRNIGYHVVYKEGNFYP 547
+ N+G + + F P
Sbjct: 93 -QFLSNLGNFKSFGDTKFIP 111
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical,
metal transport; NMR {Homo sapiens}
Length = 108
Score = 28.2 bits (62), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 105 PKVLPETLAKTIVLDTDVIFAT-DIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHK 163
P+ LAK + + A D QL A + ++Q G+ +Q+ + K WK+HK
Sbjct: 45 PEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQG-GITSDQAA-VISKFWKSHK 102
Query: 164 P 164
Sbjct: 103 T 103
Score = 28.2 bits (62), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 202 PKVLPETLAKTIVLDTDVIFAT-DIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHK 260
P+ LAK + + A D QL A + ++Q G+ +Q+ + K WK+HK
Sbjct: 45 PEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQG-GITSDQAA-VISKFWKSHK 102
Query: 261 P 261
Sbjct: 103 T 103
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase;
2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Length = 556
Score = 29.0 bits (64), Expect = 5.3
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 606 TQRYRTAFPASHAPTNFSRWV---NATTPYQIEWAPDFEPYIVAHRDLPRY 653
+ T P + +F W+ N P E D ++ RDL R
Sbjct: 224 EPKQETFAPDVNYMVDFDEWLNIQNGGPPAGPELLDDELRFVRNARDLARV 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.426
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,286,070
Number of extensions: 609393
Number of successful extensions: 1312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1284
Number of HSP's successfully gapped: 32
Length of query: 664
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 564
Effective length of database: 3,909,693
Effective search space: 2205066852
Effective search space used: 2205066852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)