RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3847
         (664 letters)



>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
           meningitidis [TaxId: 487]}
          Length = 282

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 37/220 (16%), Positives = 65/220 (29%), Gaps = 27/220 (12%)

Query: 172 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
           F   +        +  +H S      +L L + + +   K + LD DV+    +  LW  
Sbjct: 61  FIDVNPEDFAGFPLNIRHISITT-YARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWDT 118

Query: 232 FSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWR 291
                       +  +        +K           FN GV+L++L K R         
Sbjct: 119 DLGDNWLGASIDLFVERQEG----YKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSS 174

Query: 292 IIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTD- 350
              E++     +    DQDI N +       V     ++N   ++         +  TD 
Sbjct: 175 EWVEQYKDVMQY---QDQDILNGLFKGG---VCYANSRFNFMPTNYAFMANWFASRHTDP 228

Query: 351 -----------LKIIHWNSPKK---LKVKNKHMEFFRNLY 376
                      + + H+  P K           E F  L 
Sbjct: 229 LYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268



 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 3/159 (1%)

Query: 19  IVCAGYNSTRSLVTLIKSILFYRKN-PLHFHLITDTVALNILQTLFSTWSVPQVEVSFYL 77
           +  A  N    L    KS+     +  + FH++   ++      + +        + F  
Sbjct: 4   VFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFID 63

Query: 78  ADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSR 137
            +        +  +H S      +L L + + +   K + LD DV+    +  LW     
Sbjct: 64  VNPEDFAGFPLNIRHISITT-YARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWDTDLG 121

Query: 138 LRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLAD 176
                    +  +      +             G  L +
Sbjct: 122 DNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLIN 160


>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 263

 Score = 30.7 bits (68), Expect = 0.52
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 10/95 (10%)

Query: 269 FNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLV--YTL 326
           FN+GV +   +                     +      DQ + N   +          L
Sbjct: 132 FNSGVFVYQPSVETYNQL--------LHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHL 183

Query: 327 PCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKK 361
           P  +N+                 + K++H+    K
Sbjct: 184 PFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTK 218


>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
           C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 27.9 bits (61), Expect = 2.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 109 PETLAKTIVLDTDVIFATDIAQL 131
           P+ + +TI L    +F  D   L
Sbjct: 1   PQYVDETISLSAKTLFGFDKDSL 23



 Score = 27.9 bits (61), Expect = 2.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 206 PETLAKTIVLDTDVIFATDIAQL 228
           P+ + +TI L    +F  D   L
Sbjct: 1   PQYVDETISLSAKTLFGFDKDSL 23


>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 35

 Score = 24.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 546 YPINTLRNVALNQVSTPYVFLL 567
           YPI T+R VA++ ++ P +F L
Sbjct: 3   YPIFTVRWVAVHTLAVPTIFFL 24


>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae
           (Corallina officinalis) [TaxId: 35170]}
          Length = 595

 Score = 27.6 bits (61), Expect = 5.6
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 606 TQRYRTAFPASHAPTNFSRWV---NATTPYQIEWAPDFEPYIVAHRDLPRY 653
           +QR R A P     T+   ++   +A      E        I   RDL  +
Sbjct: 278 SQRVRIATPGRDFMTDLKVFLDVQDAADFRGFESYEPGARLIRTIRDLATW 328


>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091)
           {Thermus thermophilus [TaxId: 274]}
          Length = 161

 Score = 26.5 bits (59), Expect = 6.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 504 ISLTLYMSDAEAQQFLSYAGNSEAL-----RSRRNIGY-H--VVYKEGNFYPINTL 551
           I   L  S+A  ++ +  +G  EAL     ++  N+   H  ++     FYPIN L
Sbjct: 41  IRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEGFYPINVL 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,522,594
Number of extensions: 116939
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 10
Length of query: 664
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 573
Effective length of database: 1,158,166
Effective search space: 663629118
Effective search space used: 663629118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)