BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3848
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 208/384 (54%), Gaps = 46/384 (11%)
Query: 2 KIIRRHGYPAESYIVQTEDGYLLEIHRIPYGRKGRRS-GKKEVVFLQHGVFGSSADWVVA 60
++I GYPAE Y V TEDGY+L I RIPYGRK + G++ V FLQHG+
Sbjct: 18 QMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGL---------- 67
Query: 61 GPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHIS 120
+ S+ +W+ P+ +LA++LAD GYDVWLGN+RGNT++R ++
Sbjct: 68 -----------------LASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLY 110
Query: 121 YSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYN 180
YSP + FW FSF EM +DLPA IDFIL KT ++ Y+GHS GTT+ ++ S P+
Sbjct: 111 YSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLA 170
Query: 181 EKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKIACE 240
+++ +LAPVA + T + I L + K++ GN F H+ ++ C
Sbjct: 171 KRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLI--FGNKIFYPHHFFDQFLATEVCS 228
Query: 241 LNHMEMKRCEDFLFILCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHFAQFIDSGKFRQF 300
+++ C + LFI+CG D MS L V L H PAG S + ++H++Q + SGKF+ F
Sbjct: 229 RETVDL-LCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAF 287
Query: 301 DYGKD-ENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQVTIRLGLVDLFRKFRQF 359
D+G +N+ Y+ + PP Y+L + +A + NDLL + VDL
Sbjct: 288 DWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHD------VDLL------ 335
Query: 360 DYGKDENLHIYNSTFPPKYDLKFI 383
K NL IY+ PP L FI
Sbjct: 336 -LSKLPNL-IYHRKIPPYNHLDFI 357
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 355 KFRQFDYGKD-ENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPNP 413
KF+ FD+G +N+ Y+ + PP Y+L + +A + NDLL + DV L + LPN
Sbjct: 283 KFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNL 342
Query: 414 VGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKT 449
+ + +NHLDF+WA D VYN+++ ++ T
Sbjct: 343 I--YHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 193/343 (56%), Gaps = 32/343 (9%)
Query: 2 KIIRRHGYPAESYIVQTEDGYLLEIHRIPYGRKGR-RSGKKEVVFLQHGVFGSSADWVVA 60
++I GYP E Y V TEDGY+LE++RIPYG+K +G++ VVFLQHG+
Sbjct: 10 QMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGL---------- 59
Query: 61 GPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHIS 120
+ S+ +W+ P+ +LA++LAD GYDVWLGN+RGNT++R ++
Sbjct: 60 -----------------LASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLY 102
Query: 121 YSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYN 180
YSP + FW FSF EM +DLPA IDFI+ KT Q+ Y+GHS GTT+ ++ S P
Sbjct: 103 YSPDSVEFWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLA 162
Query: 181 EKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKIACE 240
+++ +LAPVA + T+S I L ++ K + G+ F HN ++ C
Sbjct: 163 KRIKTFYALAPVATVKYTKSLINKLRFVPQSLFKFI--FGDKIFYPHNFFDQFLATEVCS 220
Query: 241 LNHMEMKRCEDFLFILCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHFAQFIDSGKFRQF 300
+ + C + LFI+CG D F S L V L H PAG S + + H+ Q + SGKF+ +
Sbjct: 221 REMLNL-LCSNALFIICGFDSKNFNTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAY 279
Query: 301 DYGKD-ENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQ 342
D+G +N Y+ + PP Y++ ++ +A + DLL + Q
Sbjct: 280 DWGSPVQNRMHYDQSQPPYYNVTAMNVPIAVWNGGKDLLADPQ 322
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 142 PAEIDFILNKTDHTQM---IYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRT 198
PA +++ D Q+ +IGHSMG LT+ P+ +KL+ AI +APV Y R
Sbjct: 65 PAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLV-AIDIAPVDYHVRR 123
Query: 199 RSPI 202
I
Sbjct: 124 HDEI 127
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 142 PAEIDFILNKTDHTQM---IYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRT 198
PA +++ D Q+ +IGHSMG LT+ P+ +KL+ AI +APV Y R
Sbjct: 65 PAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLV-AIDIAPVDYHVRR 123
Query: 199 RSPI 202
I
Sbjct: 124 HDEI 127
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 141 LPAEIDFIL--------NKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAP 191
L A +D++L N+ D +++ +GHSMG L SQRP+ L AI L P
Sbjct: 145 LNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD----LKAAIPLTP 199
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 93 LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKT 152
+A LA +GY V + G+ S SH+ M ++ +F A+ID ++ +
Sbjct: 45 VALPLAAQGYRVVAPDLFGHGRS-SHLE---MVTSYSSLTFL--------AQIDRVIQEL 92
Query: 153 DHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLL 184
++ +GHSMG + + S RP+ ++L+
Sbjct: 93 PDQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
>pdb|1JBR|A Chain A, Crystal Structure Of The Ribotoxin Restrictocin And A 31-
Mer Srd Rna Inhibitor
pdb|1JBR|B Chain B, Crystal Structure Of The Ribotoxin Restrictocin And A 31-
Mer Srd Rna Inhibitor
pdb|1JBS|A Chain A, Crystal Structure Of Ribotoxin Restrictocin And A 29-Mer
Srd Rna Analog
pdb|1JBS|B Chain B, Crystal Structure Of Ribotoxin Restrictocin And A 29-Mer
Srd Rna Analog
pdb|1JBT|A Chain A, Crystal Structure Of Ribotoxin Restrictocin Complexed With
A 29-Mer SarcinRICIN DOMAIN RNA ANALOG
pdb|1JBT|B Chain B, Crystal Structure Of Ribotoxin Restrictocin Complexed With
A 29-Mer SarcinRICIN DOMAIN RNA ANALOG
Length = 149
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 312 NSTFPPKYDLKFISTKVAFF---YADNDLLTNEQVTIRLGLVDLFR--KFRQFDYGKDEN 366
NS P D K S+ +F Y N L + I+ G D R K Q GKD++
Sbjct: 32 NSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPKHSQNGMGKDDH 91
Query: 367 LHIYNSTFPPKYDLKFISTK 386
+ TFP +D KF S K
Sbjct: 92 YLLEFPTFPDGHDYKFDSKK 111
>pdb|1AQZ|A Chain A, Crystal Structure Of A Highly Specific Aspergillus
Ribotoxin, Restrictocin
pdb|1AQZ|B Chain B, Crystal Structure Of A Highly Specific Aspergillus
Ribotoxin, Restrictocin
Length = 149
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 312 NSTFPPKYDLKFISTKVAFF---YADNDLLTNEQVTIRLGLVDLFR--KFRQFDYGKDEN 366
NS P D K S+ +F Y N L + I+ G D R K Q GKD++
Sbjct: 32 NSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPKHSQNGMGKDDH 91
Query: 367 LHIYNSTFPPKYDLKFISTK 386
+ TFP +D KF S K
Sbjct: 92 YLLEFPTFPDGHDYKFDSKK 111
>pdb|3R2T|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of
Superantigen-Like Protein From Staphylococcus Aureus
Subsp. Aureus Nctc 8325.
pdb|3R2T|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of
Superantigen-Like Protein From Staphylococcus Aureus
Subsp. Aureus Nctc 8325
Length = 249
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 281 STRTLVHFAQFIDS-GKFRQFDYGKDEN-LHIYNSTFPPKYDLKFISTKVAFFYADNDLL 338
+T ++ Q +++ GK+ + + D N LH Y S P Y+L +S + +Y N LL
Sbjct: 34 TTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYS--GPSYELTNVSGQSQGYYDSNVLL 91
Query: 339 TNEQVTIRLGLVDLFRKFRQFDYGKDEN 366
N+Q +KF+ F GKDEN
Sbjct: 92 FNQQN----------QKFQVFLLGKDEN 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,630,596
Number of Sequences: 62578
Number of extensions: 772085
Number of successful extensions: 1680
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 14
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)