RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3848
(552 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 163 bits (413), Expect = 6e-45
Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 39/325 (12%)
Query: 2 KIIRRHGYPAESYIVQTEDGYLLEIHRI--PYGRKGRRSGKKEVVFLQHGVFGSSADWVV 59
++I GY + +QT+DGYLL + R+ R G + G V LQHG+F + W +
Sbjct: 35 QLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPP--VLLQHGLFMAGDAWFL 92
Query: 60 AGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHI 119
P+ +LG ++LAD G+DVW+GN RG +S H+
Sbjct: 93 NSPEQSLG---------------------------FILADHGFDVWVGNVRGTRWSYGHV 125
Query: 120 SYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEY 179
+ S D FWD+S+ E+ +DL I ++ + T+ +++ +GHS GT M +Q P
Sbjct: 126 TLSEKDKEFWDWSWQELALYDLAEMIHYVYSITN-SKIFIVGHSQGTIMSLAALTQ-PNV 183
Query: 180 NEKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKIAC 239
E + A L P++YL +P+ L +++++++ +G + + +L + C
Sbjct: 184 VEMVEAAALLCPISYLDHVTAPL-VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSIC 242
Query: 240 ELNHMEMKRCEDFLFILCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHFAQFIDSGKFRQ 299
E HM+ C D L + G + F S + L + P S + L H Q I G F
Sbjct: 243 E-GHMD---CNDLLTSITGTNCC-FNASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAH 297
Query: 300 FDYGKDENLHIYNSTFPPKYDLKFI 324
+DYG +NL +Y PP +DL I
Sbjct: 298 YDYGIFKNLKLYGQVNPPAFDLSLI 322
Score = 48.3 bits (115), Expect = 7e-06
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 349 LVDLFRK--FRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFF--YADNDLLTNEQDVK 404
L + RK F +DYG +NL +Y PP +DL I + + Y D L + DV+
Sbjct: 286 LFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVE 345
Query: 405 ELYTLLPN-PVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKTFSKT 453
LP+ P L+ N + H+DFL + K VYN ++ ++ K+
Sbjct: 346 HTLAELPSKPELLYLEN---YGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part
of an alpha/beta hydrolase domain.
Length = 62
Score = 103 bits (259), Expect = 4e-27
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 1 PKIIRRHGYPAESYIVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVA 60
++IR++GYP E + V TEDGY+L +HRIP GR R GKK VV LQHG+ SSADWV+
Sbjct: 2 SELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVLN 61
Query: 61 G 61
G
Sbjct: 62 G 62
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 47.1 bits (112), Expect = 7e-06
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 102 YDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIG 161
+DV + RG S F + + DL +++ +L+ ++ +G
Sbjct: 1 FDVIAFDLRGFGRSSPPKD------------FADYRFDDLAEDLEALLDALGLDKVNLVG 48
Query: 162 HSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTR 199
HSMG + ++ P +++ + + V +
Sbjct: 49 HSMGGLIALAYAAKYP---DRVKALVLVGTVHPAGLSS 83
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 135 EMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAY 194
M Y + ++ L+ + +IGHSMG LT+ P+ +KL+ AI +APV Y
Sbjct: 61 VMNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLV-AIDIAPVDY 119
Query: 195 LSR 197
R
Sbjct: 120 HVR 122
>gnl|CDD|227099 COG4757, COG4757, Predicted alpha/beta hydrolase [General function
prediction only].
Length = 281
Score = 42.5 bits (100), Expect = 3e-04
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 93 LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKT 152
A A G++V + RG SR P L+ + + + D PA + +
Sbjct: 49 FAAAAAKAGFEVLTFDYRGIGQSR------PASLSGSQWRYLDWARLDFPAALAALKKAL 102
Query: 153 DHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRS 200
+ ++GHS G L Q P+Y A S
Sbjct: 103 PGHPLYFVGHSFGGQAL-GLLGQHPKYA----AFAVFGSGAGWSGWMG 145
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 34.3 bits (79), Expect = 0.055
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 32/116 (27%)
Query: 93 LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFI-LNK 151
LA LA +GY+V + G+ S P +
Sbjct: 18 LARALASRGYNVVAVDYPGHGAS-----------------------LGAPDAEAVLADAP 54
Query: 152 TDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAY-----LSRTRSPI 202
D +++ +GHS+G + +L ++ P + A L++ P+
Sbjct: 55 LDPERIVLVGHSLGGGVALLLAARDP---RVKAAVVLAAGDPPDALDDLAKLTVPV 107
Score = 29.3 bits (66), Expect = 2.6
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 367 LHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPNPVGLFKV 419
+ DL ++ V + D + ++ + L LP P L +
Sbjct: 87 VLAAGDPPDALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAALPGPAELVVI 139
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 33.1 bits (76), Expect = 0.057
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 43 VVFLQHGVFGSSADWVVAGPDTALGKATYVTSD---KGIGSSADWVVAGPDTALAYLLAD 99
V+ + G G A W + P LG A + +G+GS +VA ALA +A+
Sbjct: 1 VLGIYRGDTGELAAWCLRLPGGELG-ALQTLPEHRRRGLGSR---LVA----ALARGIAE 52
Query: 100 KGYDVWLGNARGNTYSRS 117
+G + GNT SR
Sbjct: 53 RGITPFAVVVAGNTPSRR 70
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 34.6 bits (78), Expect = 0.11
Identities = 33/185 (17%), Positives = 51/185 (27%), Gaps = 51/185 (27%)
Query: 27 HRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVV 86
R+ Y G G +V L HG GSS+ W V
Sbjct: 10 VRLAYREAG--GGGPPLVLL-HGFPGSSSVW-------------------------RPV- 40
Query: 87 AGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEID 146
Y V + RG+ S ++
Sbjct: 41 -----FKVLPALAARYRVIAPDLRGHGRS----------------DPAGYSLSAYADDLA 79
Query: 147 FILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKL-LGAISLAPVAYLSRTRSPIRYL 205
+L+ +++ +GHSMG + L + P+ L L + P + R P
Sbjct: 80 ALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAA 139
Query: 206 APFAL 210
AL
Sbjct: 140 PLAAL 144
>gnl|CDD|171854 PRK13039, PRK13039, superantigen-like protein; Reviewed.
Length = 232
Score = 32.7 bits (74), Expect = 0.34
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 295 GKFRQFDYGKDEN-LHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQVTIRLGLVDLF 353
GK+ + + D N LH Y S P Y+L +S + +Y N LL N+Q
Sbjct: 32 GKYEKMNRLYDTNKLHQYYSG--PSYELTNVSGQSQGYYDSNVLLFNQQN---------- 79
Query: 354 RKFRQFDYGKDEN 366
+KF+ F GKDEN
Sbjct: 80 QKFQVFLLGKDEN 92
>gnl|CDD|215068 PLN00133, PLN00133, class I-fumerate hydratase; Provisional.
Length = 576
Score = 32.2 bits (73), Expect = 0.72
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 90 DTALAYLLADKGYDVWL-GN-----ARG--NTYSRSHISYS---PMDLAFWDFSFHEMGY 138
DT A ++ +G V G +RG + Y+ +++ YS P+D+ F G
Sbjct: 143 DTGTAIVMGKRGQRVLTDGEDEEHLSRGVYDAYTDTNLRYSQVAPLDM----FEEKNTGT 198
Query: 139 FDLPAEIDFILNKTDHTQMIYI---GHSMGTTMFYVLT 173
+LPA+ID K D +I G S T Y T
Sbjct: 199 -NLPAQIDLYAAKGDEYHFQFIAKGGGSANKTFLYQQT 235
>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated.
Length = 325
Score = 32.0 bits (74), Expect = 0.74
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 91 TALAYLLADKGYDVWL 106
TALA +LA G+DV L
Sbjct: 14 TALAIVLARNGHDVTL 29
>gnl|CDD|219891 pfam08538, DUF1749, Protein of unknown function (DUF1749). This is
a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 30.5 bits (69), Expect = 2.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 140 DLPAEIDFILNKTDHT---QMIYI-GHSMGT--TMFYVLTSQRPEYNEKLLGAISLAPV 192
++ A ++++ T + I + GHS G+ M Y LTS K+ G I APV
Sbjct: 90 EIQALVEYLRTTKGGTFGRRKIVLMGHSTGSQDVMHY-LTSGNEMGRPKVDGGILQAPV 147
>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase. An iron-sulfur protein.
An oxygen atom from dioxygen is incorporated into the
macrocycle at C-20. In the aerobic cobalamin
biosythesis pathway, four enzymes are involved in the
conversion of precorrin-3A to precorrin-6A. The first
of the four steps is carried out by EC 1.14.13.83,
precorrin-3B synthase (CobG), yielding precorrin-3B as
the product. This is followed by three methylation
reactions, which introduce a methyl group at C-17
(CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1
(CobF; EC 2.1.1.152) of the macrocycle, giving rise to
precorrin-4, precorrin-5 and precorrin-6A, respectively
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 390
Score = 30.1 bits (68), Expect = 2.7
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 5 RRHGYPAESYIVQTEDGYLLEIHRIPYGR 33
RR P +Q DG L+ + R+P GR
Sbjct: 1 RRGACPGLLRPMQAGDGLLVRV-RLPGGR 28
>gnl|CDD|185288 PRK15390, PRK15390, fumarate hydratase FumA; Provisional.
Length = 548
Score = 30.4 bits (68), Expect = 2.9
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 90 DTALAYLLADKGYDVWLGN------ARG--NTYSRSHISYS---PMDLAFWDFSFHEMGY 138
DT A ++ KG VW G ARG NTY ++ YS P+D+ + E+
Sbjct: 107 DTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDM------YKEVNT 160
Query: 139 -FDLPAEIDFILNKTDHTQMIYI---GHSMGTTMFY 170
+LPA+ID D + + I G S T Y
Sbjct: 161 GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLY 196
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 30.2 bits (68), Expect = 3.3
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 23 LLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSA 82
L+E IP + SG ++L + G + VV + LG G+GSSA
Sbjct: 97 LVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLG--------SGLGSSA 148
Query: 83 DWVVAGPDTALAY---LLADKGYDVWL 106
+ VA LA + G + W
Sbjct: 149 AFCVALSAALLAASDSISVSTGGNGWS 175
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 29.2 bits (66), Expect = 6.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 428 DFLWAKDVKALVYNDLLLVLKTFSKTRA 455
+F ++ L Y L+VL+TFSK
Sbjct: 188 EFSPESSLELLKYPPNLIVLRTFSKAFG 215
>gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed.
Length = 222
Score = 28.6 bits (65), Expect = 7.7
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 18/48 (37%)
Query: 57 WVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDV 104
V G DT +GK T VT ALA L + GY V
Sbjct: 2 LFVTGTDTDVGK-TVVT-----------------AALAQALREAGYSV 31
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 28.2 bits (63), Expect = 7.9
Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 51/151 (33%)
Query: 43 VVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGY 102
VV L HG GS+ W LA LA GY
Sbjct: 1 VVLL-HGAGGSAESW---------------------------------RPLAEALA-AGY 25
Query: 103 DVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGH 162
V + G+ S +S + A++ +L+ ++ +GH
Sbjct: 26 RVLAPDLPGHGDSD--------GPPRTPYSLEDDA-----ADLAALLDALGLGPVVLVGH 72
Query: 163 SMGTTMFYVLTSQRPEYNEKLLGAISLAPVA 193
S+G + ++RP E++ G + ++P
Sbjct: 73 SLGGAVALAAAARRP---ERVAGLVLISPPL 100
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 28.4 bits (64), Expect = 8.5
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 135 EMGYFDLPAEIDFILN-------KTDHTQMIYIGHSMGT 166
+GY+ + L K D +I +G
Sbjct: 92 AVGYYTHKEAAEESLEEIRKELEKCDGLDGFFITAGLGG 130
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 28.6 bits (64), Expect = 9.3
Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 25/154 (16%)
Query: 96 LLADKGYDVWLGNARGNT-YSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDH 154
+LA GY V N RG+T Y R D D + + DL A +D L K
Sbjct: 418 VLASAGYAVLAPNYRGSTGYGREF-----ADAIRGD--WGGVDLEDLIAAVDA-LVKLPL 469
Query: 155 --TQMIYI-GHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVA----YLSRTRSPIRYLAP 207
+ I I G S G M + ++ P + A+++A Y + +R+
Sbjct: 470 VDPERIGITGGSYGGYMTLLAATKTPRFK----AAVAVAGGVDWLLYFGESTEGLRFDP- 524
Query: 208 FALNIEKIMDWIGNGEFLAHNTMLNYVTKIACEL 241
E + E + + Y I L
Sbjct: 525 ----EENGGGPPEDREKYEDRSPIFYADNIKTPL 554
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,735,813
Number of extensions: 2819516
Number of successful extensions: 2213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2200
Number of HSP's successfully gapped: 33
Length of query: 552
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 450
Effective length of database: 6,413,494
Effective search space: 2886072300
Effective search space used: 2886072300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)