RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3848
(552 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 327 bits (839), Expect = e-108
Identities = 131/349 (37%), Positives = 189/349 (54%), Gaps = 32/349 (9%)
Query: 1 PKIIRRHGYPAESYIVQTEDGYLLEIHRIPYGRKGRRS-GKKEVVFLQHGVFGSSADWVV 59
++I GYPAE Y V TEDGY+L I RIPYGRK + G++ V FLQHG+ S+ +W+
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 60 AGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHI 119
P+ +L A++LAD GYDVWLGN+RGNT++R ++
Sbjct: 77 NLPNNSL---------------------------AFILADAGYDVWLGNSRGNTWARRNL 109
Query: 120 SYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEY 179
YSP + FW FSF EM +DLPA IDFIL KT ++ Y+GHS GTT+ ++ S P+
Sbjct: 110 YYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKL 169
Query: 180 NEKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKIAC 239
+++ +LAPVA + T + I L GN F H+ ++ C
Sbjct: 170 AKRIKTFYALAPVATVKYTETLINKLMLV--PSFLFKLIFGNKIFYPHHFFDQFLATEVC 227
Query: 240 ELNHMEMKRCEDFLFILCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHFAQFIDSGKFRQ 299
++ C + LFI+CG D MS L V L H PAG S + ++H++Q + SGKF+
Sbjct: 228 SRETVD-LLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQA 286
Query: 300 FDYG-KDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQVTIRL 347
FD+G +N+ Y+ + PP Y+L + +A + NDLL + L
Sbjct: 287 FDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLL 335
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 61.5 bits (148), Expect = 2e-10
Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 25/177 (14%)
Query: 18 TEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKG 77
++ +H++ G + V + G + S V +
Sbjct: 32 DSPYDIISLHKVNL-----IGGGNDAVLILPGTWSSGEQLVTISWNGVHY---------- 76
Query: 78 IGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMG 137
+ D+ ++ LA G++V+ + R + A W +S
Sbjct: 77 --TIPDY-----RKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWIS- 128
Query: 138 YFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAY 194
D+ + FI + ++ G S G +S + + K L + P +
Sbjct: 129 --DIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKH 183
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 60.4 bits (145), Expect = 7e-10
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 11/151 (7%)
Query: 43 VVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGY 102
VVF+ HG+ GS+ + G A G + + A ++
Sbjct: 25 VVFV-HGLAGSAGQFESQGMRFA---------ANGYPAEYVKTFEYDTISWALVVETDML 74
Query: 103 DVWLGNARGNTYSRSHISYSPMDLAF-WDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIG 161
LG+ G S+ + + + + L ID L ++ ++ +G
Sbjct: 75 FSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVG 134
Query: 162 HSMGTTMFYVLTSQRPEYNEKLLGAISLAPV 192
HSMGT + PE K+ I L V
Sbjct: 135 HSMGTFFLVRYVNSSPERAAKVAHLILLDGV 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 2e-09
Identities = 55/317 (17%), Positives = 88/317 (27%), Gaps = 129/317 (40%)
Query: 267 SLLPVILGHTPAGGSTRT--LV----HFAQFIDSGKFRQFDYGKDENLHIYNSTFPPKYD 320
S P+ L H GS LV F Q +++ +N P +
Sbjct: 5 STRPLTLSH----GSLEHVLLVPTASFFI-------ASQL---QEQ----FNKILPEPTE 46
Query: 321 LKFISTKVAFFYADNDLLTNEQVTIRLGLVDLFRKFRQFDYGKDENLHIYNSTFPPKYDL 380
+A +D E T +L KF L
Sbjct: 47 G----------FAADD----EPTTP----AELVGKF-----------------------L 65
Query: 381 KFISTKVAFFYADNDLLTNEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVY 440
++S+ V V + +L + T F + +L D+ AL
Sbjct: 66 GYVSSLV-----------EPSKVGQFDQVL-------NLCLTEFEN-CYLEGNDIHALAA 106
Query: 441 NDLL-----------LVLKTFSKTRARSEVLTVTNVIPQNPSLISDTD------------ 477
LL ++K + AR + N +L
Sbjct: 107 K-LLQENDTTLVKTKELIKNY--ITARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 478 QGSPWERYLQMTMTE-RSLYATEKRLST---KRSDQTFMQKISAFPGDFSRKMERKWNNS 533
QG+ + Y + E R LY T L K S +T ++ D + + N
Sbjct: 163 QGNT-DDYFE----ELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLN-- 214
Query: 534 TMREMLNHWIR-PEPTP 549
+ W+ P TP
Sbjct: 215 -----ILEWLENPSNTP 226
Score = 52.4 bits (125), Expect = 4e-07
Identities = 42/280 (15%), Positives = 77/280 (27%), Gaps = 129/280 (46%)
Query: 67 GKATYVTSD--KGIGSSADWVVAGPDTALAYLLADKGYD-------------VWLGNARG 111
G Y TS + + W + A + G+ + G +G
Sbjct: 1632 GMDLYKTSKAAQDV-----W-----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 112 NTYSRSHISYSPMDLA------------FWDFSFHEMGY-FDLPAEIDFILNKTDHTQ-- 156
R +YS M F + + H Y F + L+ T TQ
Sbjct: 1682 K---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---LSATQFTQPA 1735
Query: 157 ---------------------MIYIGHSMGTTMFYVLTSQRPEYNEKLL----GAISLAP 191
+ GHS+G EY L +S+
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLG------------EYAA--LASLADVMSIES 1781
Query: 192 VAYLSRTR-SPIRYLAP-----------FALN------------IEKIMDWIGN--GEFL 225
+ + R ++ P A+N ++ +++ +G G +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 226 --AHNTMLN-----YV---TKIACE-----LNHMEMKRCE 250
N N YV A + LN +++++ +
Sbjct: 1842 EIV-N--YNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 30.8 bits (69), Expect = 1.6
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 85 VVAGPDTALAYLLADKGYDVWL-GNARGNTYSRSHISYSPMDLAF-WDF---S--FHEMG 137
VV+GP +L G ++ L + +S I +S L F F + FH
Sbjct: 378 VVSGPPQSLY------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH- 430
Query: 138 YFDLPAEIDFILNKTDHTQMIYIGHSMGTTMF-----YVLTSQRPEYNEKLLGAISLAPV 192
PA D I + + + ++ L +E+++ I PV
Sbjct: 431 LLV-PAS-DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 29.2 bits (65), Expect = 4.1
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 31/123 (25%)
Query: 247 KRCEDFLFILCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHF----AQFI----DSGKFR 298
R ++ D Y F S+L +++ + P +HF + I + F
Sbjct: 1647 NRADNHFK-----DTYGF--SILDIVI-NNP----VNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 299 QFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQVT-IRLGLVD--LFRK 355
GK + I+ ++ ST F ++ LL+ Q T L L++ F
Sbjct: 1695 TIVDGKLKTEKIFK-------EINEHSTSYTF-RSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 356 FRQ 358
+
Sbjct: 1747 LKS 1749
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 81/490 (16%), Positives = 127/490 (25%), Gaps = 168/490 (34%)
Query: 23 LLEIHRIP----YGRKGRRSGK----KEVV-------FLQHGVFGSSADWVVAG----PD 63
LLE+ G G SGK +V + +F W+ P+
Sbjct: 144 LLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNSPE 196
Query: 64 TALGK--ATYVTSDKGIGSSADWVVAGP------DTALAYLLADKGY--------DVWLG 107
T L D S +D L LL K Y +V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-- 254
Query: 108 NARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEI----------DFILNKTDHTQM 157
+ W+ F+L +I DF+ T T
Sbjct: 255 -----------------NAKAWN-------AFNLSCKILLTTRFKQVTDFLSAAT--TTH 288
Query: 158 IYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFALNI--EKI 215
I + H T LT P+ + LL L R P L+I E I
Sbjct: 289 ISLDHHSMT-----LT---PDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESI 337
Query: 216 MDWIGNGEFLAHNTMLNYVTKIACELNHM---EMKRCEDFLFI----------------- 255
D + + H T I LN + E ++ D L +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 256 ------------------LCGHDPYQFKMSLLPVILGHTPAGGSTRTLVHFAQFIDS--- 294
L P + +S+ + L +H +D
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALH-RSIVDHYNI 455
Query: 295 -GKFRQFDYGKDEN---------LHIYN-------STFPPKY-DLKFISTKVAFFYADND 336
F D H+ N + F + D +F+ K+ +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH----DS 511
Query: 337 LLTNEQVTIRLGLVDLFRKFRQFDYGKDENLHIYNST---FPPKYDLKFISTK------V 387
N +I L L + ++ + D + F PK + I +K +
Sbjct: 512 TAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 388 AFFYADNDLL 397
A D +
Sbjct: 571 ALMAEDEAIF 580
Score = 50.2 bits (119), Expect = 2e-06
Identities = 69/466 (14%), Positives = 145/466 (31%), Gaps = 135/466 (28%)
Query: 130 DFSFHEMGYFDLP------AEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKL 183
+F ++ D+P EID I+ D +F+ L S++ E +K
Sbjct: 32 NFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLR-------LFWTLLSKQEEMVQKF 82
Query: 184 LGAISLAP------VAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKI 237
+ + L + R P + +++ + N F +N V+++
Sbjct: 83 VEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYN-----VSRL 134
Query: 238 ACELNHMEMKRCEDFLFILCGHDPYQFKMSLLPVILGHTPAG-GSTRTLVHFAQFIDSGK 296
++++++ L P + V++ G G T + S K
Sbjct: 135 QP---YLKLRQA------LLELRPAKN------VLI-DGVLGSGKT-WVA--LDVCLSYK 175
Query: 297 F-RQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQVTIRLGLVDLFRK 355
+ D+ I+ +++ + + +L Q L +
Sbjct: 176 VQCKMDFK------IF-----------WLN--LKNCNSPETVLEMLQ--------KLLYQ 208
Query: 356 FRQFDYGKDENLHIY-NSTFPPKYDLKFISTKVAFFYAD----NDLLTNEQDVKELYTLL 410
D N + + K + I ++ N LL +V+
Sbjct: 209 I-------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN----- 255
Query: 411 PNPVGLF----KVNFT--YFNHLDFLWAKDVKALVYNDLLLVLKTFSKTRARSEVLTVTN 464
F K+ T + DFL A + + T + +S +L +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH---SMTLTPDEVKSLLLKYLD 312
Query: 465 VIPQ---------NP---SLISDTDQGSP--WERYLQM------TMTERSLYATEKRLST 504
PQ NP S+I+++ + W+ + + T+ E SL L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEP 368
Query: 505 KRSDQTFMQKISAFPGDF---SRKMERKWNNST---MREMLNHWIR 544
+ F ++S FP + + W + + ++N +
Sbjct: 369 AEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 50.1 bits (119), Expect = 5e-07
Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 10/146 (6%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G+ S + + AL A++G+ + +A + S + +
Sbjct: 32 GLQGSKEHI-----LALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVAL 86
Query: 137 GYFDLPAEIDFILNKTDHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGA---ISLAP 191
G+ + + + + G S+G + RP +G+ + L
Sbjct: 87 GFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQ 146
Query: 192 VAYLSRTRSPIRYLAPFALNIEKIMD 217
+ Y AP A E
Sbjct: 147 GQVVEDPGVLALYQAPPATRGEAYGG 172
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 49.9 bits (118), Expect = 1e-06
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 27/161 (16%)
Query: 8 GYPAESYIVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALG 67
G+ + Q G+ + +G + K V+F+ HG ++ + + + +
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFI-HGNGDNAISFDMPPGNVS-- 64
Query: 68 KATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLA 127
G ++ L +GY + +++S S A
Sbjct: 65 -----------GYGTPA------RSVYAELKARGY------NDCEIFGVTYLSSSEQGSA 101
Query: 128 FWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTM 168
+++ + ID + T +Q+ + HSMG +M
Sbjct: 102 QYNYHSSTKYA-IIKTFIDKVKAYTGKSQVDIVAHSMGVSM 141
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 45.8 bits (109), Expect = 2e-05
Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 54/179 (30%)
Query: 27 HRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVV 86
+++ + + + VV + HG+ GS ADW
Sbjct: 5 NQLHFAKPT--ARTPLVVLV-HGLLGSGADW----------------------------- 32
Query: 87 AGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEID 146
+ LA + G+ + + + + +
Sbjct: 33 ----QPVLSHLARTQCAALTLDLPGHGTNPERHCDNFAEAVE-----------MIEQTVQ 77
Query: 147 FILNKTDHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIR 203
+ T +I +G+S+G M + Q L GAI + + +
Sbjct: 78 --AHVTSEVPVILVGYSLGGRLIMHGLA--QGAFSRLNLRGAI-IEGGHFGLQENEEKA 131
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 43.8 bits (103), Expect = 8e-05
Identities = 27/184 (14%), Positives = 49/184 (26%), Gaps = 50/184 (27%)
Query: 15 IVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTS 74
+++ +G L + P K K + + G F D
Sbjct: 11 VLRVNNGQELHVWETPP--KENVPFKNNTILIASG-FARRMDHFAG-------------- 53
Query: 75 DKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFH 134
LA L+ G+ V+ ++ H+ S +F+
Sbjct: 54 ------------------LAEYLSTNGFHVFRYDSLH------HVGLSSGS--IDEFTMT 87
Query: 135 EMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAY 194
L + L + I S+ + Y + S +L I+ V
Sbjct: 88 TG-KNSLCTVYHW-LQTKGTQNIGLIAASLSARVAYEVISDL-----ELSFLITAVGVVN 140
Query: 195 LSRT 198
L T
Sbjct: 141 LRDT 144
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/150 (14%), Positives = 38/150 (25%), Gaps = 20/150 (13%)
Query: 92 ALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFI--L 149
A G + RG+ + + D+ A D + L
Sbjct: 46 VRAREAVGLGCICMTFDLRGHEGY---------ASMRQSVTRAQN-LDDIKAAYDQLASL 95
Query: 150 NKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFA 209
D + +G S G + +LT +RP +P Y +
Sbjct: 96 PYVDAHSIAVVGLSYGGYLSALLTRERPVE-----WLALRSPALYKDAHWDQPKVSLNA- 149
Query: 210 LNIEKIMDWIGNGEFLAHNTMLNYVTKIAC 239
+MD+ N L +
Sbjct: 150 --DPDLMDYRRRALAPGDNLALAACAQYKG 177
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 39.2 bits (92), Expect = 0.002
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 28/125 (22%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G ++ A+ L + G + G+ S D F +
Sbjct: 35 GFTGHSEERHI---VAVQETLNEIGVATLRADMYGHGKS--------------DGKFEDH 77
Query: 137 GYF----DLPAEIDFILNKTDHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLA 190
F ++ A +D+ T + GHS G + M + + I L+
Sbjct: 78 TLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAA-----MERDIIKALIPLS 132
Query: 191 PVAYL 195
P A +
Sbjct: 133 PAAMI 137
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 132 SFH--EMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISL 189
S M Y + ++ L+ + +IGHSMG LT+ P+ +KL+ AI +
Sbjct: 56 SPREPVMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLV-AIDI 114
Query: 190 APVAYLSRTRSPIRYLAPFALNIEKIMDWIGNGEFLAH 227
APV Y R I + A A++ +
Sbjct: 115 APVDYHVRRHDEI-FAAINAVSESDAQTRQQAAAIMRQ 151
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 39.0 bits (91), Expect = 0.003
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 16/133 (12%)
Query: 92 ALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNK 151
LA A GY V L +G H D+ +FH+ + ++ K
Sbjct: 58 PLAEAYAKAGYTVCLPRLKG------H-GTHYEDME--RTTFHDW-VASVEEGYGWL--K 105
Query: 152 TDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFALN 211
+ G SMG T+ L P+ + G + + + + +
Sbjct: 106 QRCQTIFVTGLSMGGTLTLYLAEHHPD----ICGIVPINAAVDIPAIAAGMTGGGELPRY 161
Query: 212 IEKIMDWIGNGEF 224
++ I + N +
Sbjct: 162 LDSIGSDLKNPDV 174
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 38.2 bits (88), Expect = 0.005
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 20/133 (15%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G G++ L GY + + + + +
Sbjct: 39 GTGTTGPQSFDSN---WIPLSTQLGYTPCWISPPP--FMLNDTQVNTEYMVNA------- 86
Query: 137 GYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLS 196
I + + + ++ + S G + + P K+ ++ AP +
Sbjct: 87 --------ITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGT 138
Query: 197 RTRSPIRYLAPFA 209
P+ LA A
Sbjct: 139 VLAGPLDALAVSA 151
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 37.9 bits (88), Expect = 0.005
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 24/123 (19%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G ++ + + +A L D+ + G+ S D F M
Sbjct: 54 GFTANRNTSLL---REIANSLRDENIASVRFDFNGHGDS--------------DGKFENM 96
Query: 137 GYF----DLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPV 192
D A ++++ + +GH+ G + +L P + + + LAP
Sbjct: 97 TVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYP---DLIKKVVLLAPA 153
Query: 193 AYL 195
A L
Sbjct: 154 ATL 156
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 36.7 bits (84), Expect = 0.014
Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G G++ L A GY + + + + +
Sbjct: 73 GTGTTGPQSFDSN---WIPLSAQLGYTPCWISPPP--FMLNDTQVNTEYMVNA------- 120
Query: 137 GYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLS 196
I + + + ++ + S G + + P K+ ++ AP +
Sbjct: 121 --------ITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGT 172
Query: 197 RTRSPIRYLAPFA 209
P+ LA A
Sbjct: 173 VLAGPLDALAVSA 185
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 36.1 bits (83), Expect = 0.019
Identities = 24/220 (10%), Positives = 48/220 (21%), Gaps = 55/220 (25%)
Query: 37 RSGKKEVVFL-QHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAY 95
R G VFL G F ++ ++ + D
Sbjct: 38 REGNPCFVFLSGAGFFSTADNFANIIDKL----------------PDSIGILTIDAP--- 78
Query: 96 LLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHT 155
G + + + D I I
Sbjct: 79 -----NS--------GYSPVSNQANVGLRDWV---------------NAILMIFEHFKFQ 110
Query: 156 QMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFALNIE 213
+ HS+G + + ++ LG I L P + L P
Sbjct: 111 SYLLCVHSIGGFAALQIMNQ-----SSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRR 165
Query: 214 KIMDWIGNGEFLAHNTMLNYVTKIACELNHMEMKRCEDFL 253
+ + + + ++ + + C+ L
Sbjct: 166 QKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQL 205
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 35.2 bits (81), Expect = 0.035
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 21/137 (15%)
Query: 79 GSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGY 138
GS D +A L GY V++ G+ + + W +
Sbjct: 33 GSPNDM------NFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIW--------W 78
Query: 139 FDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRT 198
+ A + + + ++ G S+G P G + +P L
Sbjct: 79 AESSAAVAHM--TAKYAKVFVFGLSLGGIFAMKALETLP---GITAGGVFSSP--ILPGK 131
Query: 199 RSPIRYLAPFALNIEKI 215
+ +A + ++
Sbjct: 132 HHLVPGFLKYAEYMNRL 148
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 35.5 bits (82), Expect = 0.038
Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 59/172 (34%)
Query: 43 VVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGY 102
V+FL HG ++ W LG + +A D
Sbjct: 84 VIFL-HGGGQNAHTWDTVIV--GLG---------------EPALA-VD------------ 112
Query: 103 DVWLGNARGNTYS--RSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYI 160
G+ +S R +YSP + + +L + +
Sbjct: 113 ------LPGHGHSAWREDGNYSPQLNS---------------ETLAPVLRELAPGAEFVV 151
Query: 161 GHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFAL 210
G S+G T + L + P+ +L+ + + P A AL
Sbjct: 152 GMSLGGLTAI--RLAAMAPDLVGELV-LVDVTPSALQRHAELTAEQRGTVAL 200
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 35.1 bits (80), Expect = 0.054
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 129 WDFSFHEMGYFDLPAEIDFILNKTDH--TQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGA 186
+F++ + D+ L D + IGHSMG +P L
Sbjct: 110 TNFNWIDGAR-DVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLL--- 165
Query: 187 ISLAPVAYLSRTRSPIRYLAPFAL 210
I + PV + R P
Sbjct: 166 ILIEPVVITRKAIGAGRPGLPPDS 189
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 33.8 bits (77), Expect = 0.069
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 18/120 (15%)
Query: 91 TALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILN 150
TALA + G+ + R + L
Sbjct: 23 TALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGR----------LQRLLEIARAA-- 70
Query: 151 KTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFAL 210
T+ ++ G S+G+ + ++ Q P + P + + P ++
Sbjct: 71 -TEKGPVVLAGSSLGSYIAAQVSLQVPTR-----ALFLMVPPTKMGPLPALDAAAVPISI 124
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 33.3 bits (76), Expect = 0.12
Identities = 35/239 (14%), Positives = 60/239 (25%), Gaps = 60/239 (25%)
Query: 27 HRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVV 86
R+ + S ++ + HG +S DW
Sbjct: 14 TRVFQRKMVTDSNRRSIALF-HGYSFTSMDWD---------------------------- 44
Query: 87 AGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEID 146
L + GY+V+ + G + RS S F I
Sbjct: 45 ---KADLFNNYSKIGYNVYAPDYPG--FGRS---ASSEKYGIDRGDLKHAAEF-----IR 91
Query: 147 FILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLA 206
L + + +G SMG M + T Q P+ I
Sbjct: 92 DYLKANGVARSVIMGASMGGGMVIMTTLQYPD------------------IVDGIIAVAP 133
Query: 207 PFALNIEKIMDWIGNGEFLAHNTMLNYVTKIACELNHMEMKRCEDFLFILCGHDPYQFK 265
+ +++ M I L + + V + + + GH Y K
Sbjct: 134 AWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEK 192
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 33.6 bits (77), Expect = 0.12
Identities = 42/222 (18%), Positives = 59/222 (26%), Gaps = 65/222 (29%)
Query: 9 YPAE-SYIVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALG 67
Y Y+ T G L + Y + + L HG + W
Sbjct: 16 YAYPVHYLDFTSQGQPLSMA---YLDVAPKKANGRTILLMHGKNFCAGTW---------- 62
Query: 68 KATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRS----HISYSP 123
+ LAD GY V + G + +S H YS
Sbjct: 63 --------------ERTIDV---------LADAGYRVIAVDQVG--FCKSSKPAHYQYSF 97
Query: 124 MDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKL 183
LA A +L + + IGHSMG + P E+L
Sbjct: 98 QQLA---------------ANTHALLERLGVARASVIGHSMGGMLATRYALLYPRQVERL 142
Query: 184 --LGAISLAP-----VAYLSRTRSPIRYLAPFALNIEKIMDW 218
+ I L V + S R L A I +
Sbjct: 143 VLVNPIGLEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQA 184
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 33.5 bits (77), Expect = 0.14
Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 62/201 (30%)
Query: 10 PAESYIVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKA 69
+ Y + DG L +H Y G S V G+ ++ D+ L
Sbjct: 5 YEDRY-WTSSDG--LRLHFRAYE--GDISR--PPVLCLPGLTRNARDFEDLAT--RL--- 52
Query: 70 TYVTSDKGIGSSADW-VVAGPDTALAYLLADKGYDVWLGNARGNT-YSRSHISYSPMDLA 127
+ DW V+ P+ G RG++ Y++ ++Y PM
Sbjct: 53 -----------AGDWRVLC-PE--------------MRG--RGDSDYAKDPMTYQPMQYL 84
Query: 128 FWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLG 185
+++ +L + + + IG S+G TM +L + P +
Sbjct: 85 ---------------QDLEALLAQEGIERFVAIGTSLGGLLTM--LLAAANPARIAAAV- 126
Query: 186 AISLAPVAYLSRTRSPIRYLA 206
+ P Y+
Sbjct: 127 LNDVGPEVSPEGLERIRGYVG 147
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 33.5 bits (76), Expect = 0.16
Identities = 12/94 (12%), Positives = 22/94 (23%), Gaps = 6/94 (6%)
Query: 102 YDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQMIYIG 161
Y L ++ + + H D+ I +L ++
Sbjct: 56 YFTNLAEELQGDWAFVQVEVPSGKIG-SGPQDHAHDAEDVDDLIGILLRDHCMNEVALFA 114
Query: 162 HSMGT--TMFYVLTSQRPEYNEKLLGAISLAPVA 193
S GT + S + I V
Sbjct: 115 TSTGTQLVFELLENSAHK---SSITRVILHGVVC 145
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 33.3 bits (75), Expect = 0.17
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 9/126 (7%)
Query: 92 ALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYF---------DLP 142
+A LL +G + G+ S + +F M + D
Sbjct: 76 QVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWA 135
Query: 143 AEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPI 202
A +DFI + + G SMGT M +T+ LLG + + V R
Sbjct: 136 AALDFIEAEEGPRPTGWWGLSMGTMMGLPVTASDKRIKVALLGLMGVEGVNGEDLVRLAP 195
Query: 203 RYLAPF 208
+ P
Sbjct: 196 QVTCPV 201
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 32.4 bits (74), Expect = 0.28
Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 25/155 (16%)
Query: 79 GSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGY 138
G+SAD L L KGY +G H P +L + +
Sbjct: 27 GNSADV------RMLGRFLESKGYTCHAPIYKG------H-GVPPEELVHTGP---DDWW 70
Query: 139 FDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRT 198
D+ +F+ NK + ++ G S+G L P + G +++ Y+
Sbjct: 71 QDVMNGYEFLKNK-GYEKIAVAGLSLGGVFSLKLGYTVP-----IEGIVTMCAPMYIKSE 124
Query: 199 RSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNY 233
+ + G E M +
Sbjct: 125 ETM---YEGVLEYAREYKKREGKSEEQIEQEMEKF 156
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 31.8 bits (72), Expect = 0.38
Identities = 34/228 (14%), Positives = 60/228 (26%), Gaps = 63/228 (27%)
Query: 35 GRRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALA 94
G + V+ L HG+ SS W G L +A Y VA D
Sbjct: 27 GSGQARFSVLLL-HGIRFSSETWQNLGTLHRLAQAGY------------RAVA-ID---- 68
Query: 95 YLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDH 154
L G+ + +LA F + +++ +
Sbjct: 69 --LPGLGHS-----------KEAAAPAPIGELAPGSF-------------LAAVVDALEL 102
Query: 155 TQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEK 214
+ I S+ + +L G + +AP+ + + AL +
Sbjct: 103 GPPVVISPSLSGMYSLPFLTAPG---SQLPGFVPVAPICTDKINAANYASVKTPALIVYG 159
Query: 215 IMDWIGNGEFLAHNTMLNYVTKIACELNHMEMKRCEDFLFILCGHDPY 262
D +G F ++ + GH Y
Sbjct: 160 DQDPMGQTSFEH----------------LKQLPNHRVLIMKGAGHPCY 191
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 32.1 bits (73), Expect = 0.38
Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 51/190 (26%)
Query: 36 RRSGKKEVVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGIGSSADWVVAGPDTALAY 95
+ + V+ L HG S+ W A
Sbjct: 33 KSGSEGPVLLLLHGGGHSALSW--------------------------------AVFTAA 60
Query: 96 LLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHT 155
+++ + + R + + + +P DL+ + D+ ++ +
Sbjct: 61 IISRVQCRIVALDLRS--HGETKVK-NPEDLSAETMAK------DVGNVVEA-MYGDLPP 110
Query: 156 QMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLA----PFA 209
++ IGHSMG + S + L I + + S +L F
Sbjct: 111 PIMLIGHSMGGAIAV--HTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFK 168
Query: 210 LNIEKIMDWI 219
++E ++W
Sbjct: 169 -SLENAIEWS 177
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 32.1 bits (74), Expect = 0.46
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 91 TALAYLLADKGYDVWL 106
+AL+ L D G +V +
Sbjct: 13 SALSVPLVDNGNEVRI 28
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 31.7 bits (73), Expect = 0.52
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 91 TALAYLLADKGYDVWL 106
T A +L + G +V L
Sbjct: 27 TVFAQMLHENGEEVIL 42
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 31.8 bits (73), Expect = 0.58
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 91 TALAYLLADKGYDVWL 106
TALA +L+ K +V +
Sbjct: 28 TALAMVLSKKCREVCV 43
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 31.7 bits (73), Expect = 0.58
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 91 TALAYLLADKGYDVWL 106
TALA +LA KG V L
Sbjct: 42 TALALVLARKGQKVRL 57
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 31.5 bits (71), Expect = 0.64
Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 24/166 (14%)
Query: 77 GIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEM 136
G+ S+ + + L+ D+G + G F
Sbjct: 160 GLESTKEESFQ-----MENLVLDRGMATATFDGPGQGEM------------FEYKRIAGD 202
Query: 137 GYFDLPAEIDFILNKT--DHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAY 194
A +D + + + +G S+G + P L IS +
Sbjct: 203 YEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR----LAACISWGGFSD 258
Query: 195 L-SRTRSPIRYLAPFALNIEKIMDWIGNGEFLAHNTMLNYVTKIAC 239
L + + A + +++IAC
Sbjct: 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIAC 304
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 31.5 bits (72), Expect = 0.68
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 17/134 (12%)
Query: 93 LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKT 152
LA +L V+ + G H S + FH D+ +D +
Sbjct: 61 LARMLMGLDLLVFAHDHVG------H-GQSEGERMVVS-DFHVF-VRDVLQHVDSMQKDY 111
Query: 153 DHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFAL 210
+ +GHSMG + E G + ++P L+ S + A
Sbjct: 112 PGLPVFLLGHSMGGAIAILTAA-----ERPGHFAGMVLISP-LVLANPESATTFKVLAAK 165
Query: 211 NIEKIMDWIGNGEF 224
+ ++ + +G
Sbjct: 166 VLNSVLPNLSSGPI 179
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 31.4 bits (70), Expect = 0.69
Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 32/189 (16%)
Query: 2 KIIRRHGYPAESYIVQTEDGYLLEIH-RIPYGRKGRRSGKKEVVFLQHGVFGSSADWVVA 60
K ++ GY E + + P KG V G G + + +V
Sbjct: 78 KTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLKGAVP----GVLCIPG-SGRTKEGLVG 132
Query: 61 GPDTALGKATYVTSDKGIGSSADWVVAGPDTALAYLLADKGYDVWLGNARGNTYSRSHIS 120
P GI P ++A + +GY + +
Sbjct: 133 EP--------------GICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLEC 178
Query: 121 Y---SPMDLAFWDFSFHEMG-------YFDLPAEIDFILNK--TDHTQMIYIGHSMGTTM 168
Y D E+G + ++++ + +++ G S+GT
Sbjct: 179 YDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEP 238
Query: 169 FYVLTSQRP 177
VL
Sbjct: 239 MMVLGVLDK 247
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 30.9 bits (70), Expect = 0.69
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 140 DLPAEIDFILNKTDHTQMIYIGHSMGTTM-FYVLTSQRPEYNEKLLGAISLAP------V 192
L + +L++T ++ + HSMG Y + + + K+ ++L
Sbjct: 54 VLSRFVQKVLDETGAKKVDIVAHSMGGANTLYYI--KNLDGGNKVANVVTLGGANRLTTG 111
Query: 193 AYL--SRTRSPIRYLA 206
L + I Y +
Sbjct: 112 KALPGTDPNQKILYTS 127
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 31.2 bits (70), Expect = 0.96
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 91 TALAYLLADKGYDVWL 106
A A LA KG V
Sbjct: 17 HAFAAYLALKGQSVLA 32
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 30.8 bits (70), Expect = 1.1
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 28/129 (21%)
Query: 88 GPDTA-----LAYLLADKGYDVWLGNARGNTYSRS-----HISYSPMDLAFWDFSFHEMG 137
+ +A LA +GY V + G + RS SYS +
Sbjct: 35 ILEQGLAWQEVALPLAAQGYRVVAPDLFG--HGRSSHLEMVTSYSSLTFL---------- 82
Query: 138 YFDLPAEIDFILNKTDHTQMIYIGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSR 197
A+ID ++ + ++ +GHSMG + + S RP+ ++L+ + L A S+
Sbjct: 83 -----AQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELI-LVELPLPAEESK 136
Query: 198 TRSPIRYLA 206
S + L
Sbjct: 137 KESAVNQLT 145
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.4 bits (68), Expect = 1.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 91 TALAYLLADKGYDVWLGN 108
+A LAD G++V +G
Sbjct: 32 RTMAGALADLGHEVTIGT 49
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 30.2 bits (69), Expect = 1.6
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 86 VAGPDTA-LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDL 126
VAG LA L ++ +V+ G +R N ++ +D+
Sbjct: 20 VAGFVGKYLANHLTEQNVEVF-GTSRNNEAKLPNVEMISLDI 60
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 29.9 bits (67), Expect = 1.8
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 13/79 (16%)
Query: 123 PMDLAFWDFSFHEMGYFD----------LPAEIDFILNKTDHTQMIYIGHSMGTTMFYVL 172
A F G +D + I +I +G S G + +
Sbjct: 99 SEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANV 158
Query: 173 TSQRPEYNEKLLGAISLAP 191
++P E A+ + P
Sbjct: 159 LIEQP---ELFDAAVLMHP 174
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 29.4 bits (66), Expect = 3.0
Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 45/189 (23%)
Query: 43 VVFLQHGVFGSSADWVVAGPDTALGKATYVTSDKGI--GSSADWVVAGPDTALAYLLADK 100
V++L HG+ GS DW G + +D I G ++ P+
Sbjct: 64 VLYLLHGIGGSENDWFEGGGRANV------IADNLIAEGKIKPLIIVTPN---------- 107
Query: 101 GYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILN-KTDHTQMIY 159
NA G + + F + L I+ + TD
Sbjct: 108 ------TNAAGPGIADGY-------ENFTKDLLNS-----LIPYIESNYSVYTDREHRAI 149
Query: 160 IGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFAL-NIEKIM 216
G SMG + LT +K ++ A ++ +
Sbjct: 150 AGLSMGGGQSFNIGLT-----NLDKFAYIGPISAAPNTYPNERLFPDGGKAAREKLKLLF 204
Query: 217 DWIGNGEFL 225
G + L
Sbjct: 205 IACGTNDSL 213
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 29.3 bits (66), Expect = 3.5
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 93 LAYLLADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKT 152
LA +L V+ + G H S + FH D+ +D +
Sbjct: 79 LARMLMGLDLLVFAHDHVG------H-GQSEGERMVVS-DFHVF-VRDVLQHVDSMQKDY 129
Query: 153 DHTQMIYIGHSMG--TTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFAL 210
+ +GHSMG + E G + ++P L+ S + A
Sbjct: 130 PGLPVFLLGHSMGGAIAILTAA-----ERPGHFAGMVLISP-LVLANPESATTFKVLAAK 183
Query: 211 NIEKIMDWIG----NGEFLAHN 228
+ ++ + + L+ N
Sbjct: 184 VLNLVLPNLSLGPIDSSVLSRN 205
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 28.9 bits (65), Expect = 4.4
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 9 YPAESYIVQTEDGYLLEIHRIPYGRKGRRSGKKEVVFLQHGVFGSSADW 57
+S+ + T G + H G + L HG SS W
Sbjct: 43 VRCKSFYISTRFG---QTH---VIASGPEDA--PPLVLLHGALFSSTMW 83
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol
metabolism; 1.90A {Burkholderia xenovorans}
Length = 266
Score = 28.4 bits (64), Expect = 5.3
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 28 RIPYGRKGRRSGKKEVVFLQHGVFGSSADW 57
+ Y G R G + L + + + W
Sbjct: 13 ELHYRIDGERHGNAPWIVLSNSLGTDLSMW 42
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 88
Score = 26.8 bits (60), Expect = 5.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 207 PFALNIEKIMDWIGNG 222
LN+ I+D++ G
Sbjct: 45 QTYLNVPAILDFLEKG 60
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 28.5 bits (64), Expect = 5.8
Identities = 6/69 (8%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 160 IGHSMGTTMFYVLTSQRPEYNEKLLGAISLAPVAYLSRTRSPIRYLAPFALNIEKIMDWI 219
+G++ G + + E +++ + + + + + +IE + + +
Sbjct: 100 VGNAFGGGLAIATALRYSERVDRM---VLMGAAGTRFDVTEGLNAVWGYTPSIENMRNLL 156
Query: 220 GNGEFLAHN 228
+ A++
Sbjct: 157 ---DIFAYD 162
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 28.4 bits (63), Expect = 5.8
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 1/137 (0%)
Query: 330 FFYADNDLLTNEQVTIRLGLVDLFRKFRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAF 389
N NE +L + +F FD ++ + + +A
Sbjct: 63 NRAGMNTKSVNETGKEKLLISKIFTNPDLFDKNFQRIEPKRLTS-LQYFSIYLGYISIAH 121
Query: 390 FYADNDLLTNEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKT 449
Y N+ +L L F ++ ++L + + + + + ++ +
Sbjct: 122 HYNIEVPTFNKTITSDLKHLYDKRTTFFGIDCEIVSNLLNVLPYEEVSSIIKPMYPIVDS 181
Query: 450 FSKTRARSEVLTVTNVI 466
F K + + N +
Sbjct: 182 FGKDYDLTIQTVLKNAL 198
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 28.3 bits (64), Expect = 6.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 428 DFLWAKDVKALV--YNDLLLVLKTFSKTRA 455
+F + L+ Y L+V +T SK
Sbjct: 205 EFSPSPSATTLLEKYPTKLVVSRTMSKAFD 234
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 28.1 bits (62), Expect = 8.4
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 127 AFWDFSFHEMGYFDLPAEIDFI-----LNKTDHTQMIYIGHSMGTTMFYVLTSQRPEY 179
F D L A I I D ++ G SMG + + PE
Sbjct: 230 LFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPEL 287
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 27.9 bits (62), Expect = 9.8
Identities = 25/152 (16%), Positives = 38/152 (25%), Gaps = 24/152 (15%)
Query: 96 LLADKGYDVWLGNARGNT-YSRSHISYSPMDLAFWDFSFHEMG---YFDLPAEIDFILNK 151
+G V N G+T Y R A+ + G D A + +
Sbjct: 448 YFTSRGIGVADVNYGGSTGYGR----------AYRERLRGRWGVVDVEDCAAVATALAEE 497
Query: 152 --TDHTQMIYIGHSMG-TTMFYVLTSQRPEYNEKLLGAISLAPVA-YLSRTRSPIRYLAP 207
D ++ G S G T L + L PV L
Sbjct: 498 GTADRARLAVRGGSAGGWTAASSLV-----STDVYACGTVLYPVLDLLGWADGGTHDFES 552
Query: 208 FALNIEKIMDWIGNGEFLAHNTMLNYVTKIAC 239
L+ I + E L ++
Sbjct: 553 RYLDFL-IGSFEEFPERYRDRAPLTRADRVRV 583
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 27.7 bits (61), Expect = 9.9
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 16/83 (19%)
Query: 97 LADKGYDVWLGNARGNTYSRSHISYSPMDLAFWDFSFHEMGYFDLPAEIDFILNKTDHTQ 156
L +G V++ N G S + L A + +L T T+
Sbjct: 37 LQQRGATVYVANLSG-FQSDDGPNGRGEQLL---------------AYVKTVLAATGATK 80
Query: 157 MIYIGHSMGTTMFYVLTSQRPEY 179
+ +GHS G + + P+
Sbjct: 81 VNLVGHSQGGLTSRYVAAVAPDL 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,615,246
Number of extensions: 521362
Number of successful extensions: 1246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 72
Length of query: 552
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 454
Effective length of database: 3,965,535
Effective search space: 1800352890
Effective search space used: 1800352890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)