BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3850
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 11 STSIDGRKFRQFDYGKD-ENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKEL 69
S ++ KF+ FD+G +N+ Y+ + PP Y+L + +A + NDLL + DV L
Sbjct: 276 SQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLL 335
Query: 70 YTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKT 112
+ LPN + + +NHLDF+WA D VYN+++ ++ T
Sbjct: 336 LSKLPNLI--YHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 11 STSIDGRKFRQFDYGKD-ENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKEL 69
+ ++ KF+ +D+G +N Y+ + PP Y++ ++ +A + DLL + QDV L
Sbjct: 268 TQAVKSGKFQAYDWGSPVQNRMHYDQSQPPYYNVTAMNVPIAVWNGGKDLLADPQDVGLL 327
Query: 70 YTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVL 110
LPN + + ++NHLDF+WA D VYND++ ++
Sbjct: 328 LPKLPNLI--YHKEIPFYNHLDFIWAMDAPQEVYNDIVSMI 366
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 6 CGRFLSTSIDGRKFRQFDYGKDENLHIYNSTFP--PKYDLK 44
CG F +TS+ R D+G NLHI+N P P Y +K
Sbjct: 70 CGTFGATSLQQRYLATGDFGG--NLHIWNLEAPEMPVYSVK 108
>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
pdb|2A9D|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
Length = 372
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 143 SPWERYLQMTMTE-------RSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNN 195
P R L +++ E + AT + +RS+ + ++ + P D +W
Sbjct: 63 GPGGRTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGG 122
Query: 196 STMREMLNHWIRPE 209
+ +R++L H PE
Sbjct: 123 ARLRDVLLHAGFPE 136
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQSAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQAAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite
Oxidase At Resting State
pdb|2A9C|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
pdb|2A9C|B Chain B, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
Length = 372
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 76 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 135
Query: 209 E 209
E
Sbjct: 136 E 136
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
At Resting State
pdb|2A9A|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
pdb|2A9A|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
Length = 372
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 76 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 135
Query: 209 E 209
E
Sbjct: 136 E 136
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 149 LQMTMTERSLYATEKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHWIRP 208
L+ + + AT + +RS+ + ++ + P D +W + +R++L H P
Sbjct: 170 LRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFP 229
Query: 209 E 209
E
Sbjct: 230 E 230
>pdb|3PPU|A Chain A, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
pdb|3PPU|B Chain B, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
Length = 352
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 52 FFYADNDLLTNEQDVKELY-TLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVL 110
F AD+D L N Q VK+LY + P+ G F V LW K +V N+ ++
Sbjct: 127 FPAADSDPLNNAQHVKDLYLKVKPDYDGRFTV--------PVLWDKHTGTIVNNESSEII 178
Query: 111 KTFS 114
+ F+
Sbjct: 179 RXFN 182
>pdb|1IJG|A Chain A, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|B Chain B, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|C Chain C, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|D Chain D, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|E Chain E, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|F Chain F, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|G Chain G, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|H Chain H, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|I Chain I, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|J Chain J, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|K Chain K, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|L Chain L, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1JNB|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1JNB|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1JNB|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1JNB|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1JNB|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1JNB|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1JNB|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1JNB|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1JNB|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1JNB|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1JNB|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1JNB|L Chain L, Connector Protein From Bacteriophage Phi29
pdb|1H5W|A Chain A, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|B Chain B, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|C Chain C, 2.1a Bacteriophage Phi-29 Connector
Length = 309
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 43 LKFISTKVAFFYADNDLLTNEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALV 102
+ F V + A N L+ ++DV T+ +++ F +N+ D + +D+ ++
Sbjct: 63 VGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRD-MKEEDMGVVI 121
Query: 103 YNDLLL-----VLKTFSKTRAR-SEVLTVTNVIPQNPSLI--SDTDQGSPWERYLQMTMT 154
YN+ + L+ F+ A E+++V + P LI +D +Q S + Y Q
Sbjct: 122 YNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGN 181
Query: 155 ERSLYATE 162
++A E
Sbjct: 182 APVIFAHE 189
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 43 LKFISTKVAFFYADNDLLTNEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALV 102
+ F V + A N L+ ++DV T+ +++ F +N+ D + +D+ ++
Sbjct: 63 VGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRD-MKEEDMGVVI 121
Query: 103 YNDLLL-----VLKTFSKTRAR-SEVLTVTNVIPQNPSLI--SDTDQGSPWERYLQMTMT 154
YN+ + L+ F+ A E+++V + P LI +D +Q S + Y Q
Sbjct: 122 YNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGN 181
Query: 155 ERSLYATE 162
++A E
Sbjct: 182 APVIFAHE 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,556,040
Number of Sequences: 62578
Number of extensions: 259179
Number of successful extensions: 618
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 21
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)