RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3850
(215 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 99.3 bits (247), Expect = 7e-25
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 18 KFRQFDYG-KDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPNP 76
KF+ FD+G +N+ Y+ + PP Y+L + +A + NDLL + DV L + LPN
Sbjct: 283 KFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNL 342
Query: 77 VGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKT 112
+ K+ +NHLDF+WA D VYN+++ ++ T
Sbjct: 343 IYHRKIP--PYNHLDFIWAMDAPQAVYNEIVSMMGT 376
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-09
Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 71/248 (28%)
Query: 14 IDGRKFRQF--DYGKDE-NLHIYNSTFPPKYDLK--FISTKVA---FFYADNDLLTNEQD 65
+D R +G E L + ++F L+ F F AD++
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE----PTT 56
Query: 66 VKELYT---------LLPNPVGLF----KVNFTYFNHLDFLWAKDVKALVYNDLL----- 107
EL + P+ VG F + T F + +L D+ AL LL
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAK-LLQENDT 114
Query: 108 ------LVLKTFSKTRARSEVLTVTNVIPQNPSLISDTD------------QGSPWERYL 149
++K + AR + N +L QG+ + Y
Sbjct: 115 TLVKTKELIKNY--ITARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT-DDYF 170
Query: 150 QMTMTE-RSLYATEKRLST---KRSDQTFMQKISAFPGDFSRKMERKWNNSTMREMLNHW 205
+ E R LY T L K S +T ++ D + + N + W
Sbjct: 171 E----ELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLN-------ILEW 218
Query: 206 IR-PEPTP 212
+ P TP
Sbjct: 219 LENPSNTP 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.011
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 21 QFDYGKDENLHIYNSTFPPKYDLKFI--STKVAFFYADNDLLTNEQDVKE-----LYTLL 73
+ Y + L ++ F +D K + K + D + +D +TLL
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 74 PNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKTFSKTRAR----SEVLTVTNV 128
+ + +++ + ++ + + + R R ++V NV
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Score = 32.1 bits (72), Expect = 0.15
Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 44/172 (25%)
Query: 56 DNDLLTNEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKD-----VKALVYNDLLLVL 110
+L Q + LY + PN + + + +K+ Y + LLVL
Sbjct: 195 PETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVL 250
Query: 111 ---------KTFSKTRARSEVLTVTNVIPQNPSLISDTDQGSPWERYLQMTMTERSLYAT 161
F+ ++L T TD S T T SL
Sbjct: 251 LNVQNAKAWNAFN---LSCKILLTTRFK-------QVTDFLSA------ATTTHISLDHH 294
Query: 162 EKRLSTKRSDQTFMQKISAFPGDFSRKMERKWNN--------STMREMLNHW 205
L+ ++ + P D R++ N ++R+ L W
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATW 344
Score = 29.8 bits (66), Expect = 0.80
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 39/108 (36%)
Query: 1 MQSRYCGR-FLSTSIDGRKFRQFDYGKDENLHIYN-------STFPPKY-DLKFISTKVA 51
+ + + +D + + H+ N + F + D +F+ K+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 52 F-------------------FY----ADNDLLTNEQDVKELYTLLPNP 76
FY DND E+ V + LP
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVNAILDFLPKI 555
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 29.1 bits (64), Expect = 1.0
Identities = 16/77 (20%), Positives = 22/77 (28%)
Query: 13 SIDGRKFRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTL 72
I G F + D L I + TK+ F Y +D K LY +
Sbjct: 138 VISGYSFTEPDPEHPGELRITEKFRDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDI 197
Query: 73 LPNPVGLFKVNFTYFNH 89
K + H
Sbjct: 198 YLKAQNGNKEKVLAYEH 214
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 91 DFLWAKDVKALV--YNDLLLVLKTFSKTRA 118
+F + L+ Y L+V +T SK
Sbjct: 205 EFSPSPSATTLLEKYPTKLVVSRTMSKAFD 234
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 26.9 bits (59), Expect = 5.3
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 13 SIDGRKFRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTL 72
+G K + +D H +++ + S + F A+ND +++V ++
Sbjct: 166 DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAH 225
Query: 73 LPNP 76
+
Sbjct: 226 IRTG 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.407
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,186,163
Number of extensions: 169725
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 9
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)