RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3850
         (215 letters)



>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
           [TaxId: 9615]}
          Length = 377

 Score = 75.1 bits (183), Expect = 1e-16
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 3   SRYCGRFLSTSIDGRKFRQFDYG-KDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLT 61
           S       S ++   KF+ FD+G   +N+  Y+ + PP Y+L  +   +A +   NDLL 
Sbjct: 268 SVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLA 327

Query: 62  NEQDVKELYTLLPNPVGLFKVNFTYFNHLDFLWAKDVKALVYNDLLLVLKT 112
           +  DV  L + LPN +   K+    +NHLDF+WA D    VYN+++ ++ T
Sbjct: 328 DPHDVDLLLSKLPNLIYHRKIP--PYNHLDFIWAMDAPQAVYNEIVSMMGT 376


>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
           harveyi [TaxId: 669]}
          Length = 302

 Score = 29.1 bits (64), Expect = 0.37
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 14  IDGRKFRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLL 73
            +G K     + +D   H +++       +   S  +  F A+ND    +++V ++   +
Sbjct: 164 FEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHI 223

Query: 74  PNPVGLFKV 82
                    
Sbjct: 224 RTGHCKLYS 232


>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
           protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
          Length = 175

 Score = 26.2 bits (57), Expect = 2.3
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 10/109 (9%)

Query: 24  YGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPNPVGLFKVN 83
           Y K+ N+         +        + +       L     +  E +  L   V      
Sbjct: 24  YNKENNVSFAL----DRKAFDRAFRQQST----TGLFDITVEGGETFPALVKAV-QMDKR 74

Query: 84  FTYFNHLDFLW-AKDVKALVYNDLLLVLKTFSKTRARSEVLTVTNVIPQ 131
                H+DF          V   +    ++  + +     + V N+   
Sbjct: 75  KRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIV 123


>d2rhwa1 c.69.1.10 (A:4-286)
           2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
           (BPHD) {Burkholderia xenovorans [TaxId: 36873]}
          Length = 283

 Score = 25.9 bits (55), Expect = 3.9
 Identities = 8/59 (13%), Positives = 15/59 (25%)

Query: 17  RKFRQFDYGKDENLHIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPN 75
           R+                ST+     L  I  K    +  +D         +L   + +
Sbjct: 193 RQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD 251


>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
           different strains [TaxId: 11320]}
          Length = 314

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)

Query: 156 RSLYATE---KRLSTKRSDQTFMQKISAFPG--DFSRKMERKW 193
             LY +      + +    Q+F+    A P     S +++  W
Sbjct: 181 TKLYGSGNKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHW 223


>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
           BC3120 {Bacillus cereus [TaxId: 1396]}
          Length = 403

 Score = 24.9 bits (54), Expect = 8.6
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 182 PGDFSRKMERKWNNSTMREMLNHWIR 207
            G+ S+ +   +    M ++L  WIR
Sbjct: 91  KGNPSQHLTPVFKTKEMLDLL-DWIR 115


>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 166

 Score = 24.4 bits (53), Expect = 8.9
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 98  VKALVYNDLLLVLKTFSKTRARSEVLTVTNVIPQNPSLISDTDQGSPWERYLQMTMTERS 157
            +A+  +  +L+     K +    + T       N SL++     + W + +   +  RS
Sbjct: 94  ARAVQMSTKVLIQFLQKKAKNLDAITTPDPT--TNASLLTKLQAQNQWLQDMTTHLILRS 151

Query: 158 L 158
            
Sbjct: 152 F 152


>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 322

 Score = 24.8 bits (52), Expect = 9.5
 Identities = 7/45 (15%), Positives = 15/45 (33%)

Query: 31  HIYNSTFPPKYDLKFISTKVAFFYADNDLLTNEQDVKELYTLLPN 75
              N  +  K   + I        A+ D +   Q  + +   +P+
Sbjct: 243 MERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPH 287


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,226
Number of extensions: 33825
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 11
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)