Query psy3854
Match_columns 222
No_of_seqs 240 out of 1263
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:09:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3152|consensus 100.0 4.9E-49 1.1E-53 347.0 9.9 150 32-181 70-225 (278)
2 PF00076 RRM_1: RNA recognitio 99.7 4.2E-18 9E-23 118.3 7.0 69 39-114 1-69 (70)
3 PLN03134 glycine-rich RNA-bind 99.7 5E-17 1.1E-21 133.0 10.0 79 31-115 29-107 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.4E-21 143.7 9.8 75 35-115 2-76 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-16 2.5E-21 143.5 8.8 72 38-115 271-342 (352)
6 PF14259 RRM_6: RNA recognitio 99.6 6.5E-16 1.4E-20 108.9 7.6 69 39-114 1-69 (70)
7 TIGR01628 PABP-1234 polyadenyl 99.6 4.2E-15 9E-20 142.8 8.9 96 33-156 282-377 (562)
8 TIGR01628 PABP-1234 polyadenyl 99.6 2E-15 4.4E-20 144.9 6.3 120 32-179 174-304 (562)
9 TIGR01659 sex-lethal sex-letha 99.6 8E-15 1.7E-19 135.5 9.4 77 33-115 104-180 (346)
10 KOG0125|consensus 99.6 5.1E-15 1.1E-19 135.4 7.5 99 30-136 90-193 (376)
11 smart00362 RRM_2 RNA recogniti 99.6 1.9E-14 4E-19 97.6 8.3 69 38-114 1-69 (72)
12 TIGR01645 half-pint poly-U bin 99.5 1.9E-14 4.1E-19 141.5 8.9 76 34-115 105-180 (612)
13 TIGR01645 half-pint poly-U bin 99.5 3E-14 6.5E-19 140.1 8.9 75 35-115 203-277 (612)
14 COG0724 RNA-binding proteins ( 99.5 6.6E-14 1.4E-18 114.8 8.7 74 36-115 115-188 (306)
15 smart00360 RRM RNA recognition 99.5 8.9E-14 1.9E-18 93.7 7.7 68 41-114 1-68 (71)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.4E-14 1.4E-18 132.0 9.3 75 35-115 294-368 (509)
17 TIGR01659 sex-lethal sex-letha 99.5 8E-14 1.7E-18 128.8 9.3 74 34-113 191-264 (346)
18 TIGR01622 SF-CC1 splicing fact 99.5 1.2E-13 2.5E-18 128.9 8.9 74 36-115 186-259 (457)
19 PLN03120 nucleic acid binding 99.5 1.2E-13 2.7E-18 123.4 8.7 70 36-115 4-73 (260)
20 KOG4208|consensus 99.5 7.9E-14 1.7E-18 120.7 6.8 77 32-114 45-122 (214)
21 KOG0122|consensus 99.5 3E-13 6.5E-18 119.8 9.7 76 32-113 185-260 (270)
22 TIGR01648 hnRNP-R-Q heterogene 99.4 6.3E-13 1.4E-17 130.2 11.6 75 33-114 55-130 (578)
23 cd00590 RRM RRM (RNA recogniti 99.4 7.8E-13 1.7E-17 90.0 8.4 70 38-114 1-70 (74)
24 KOG0107|consensus 99.4 1.9E-13 4.1E-18 116.2 6.4 70 34-114 8-77 (195)
25 KOG0126|consensus 99.4 1.7E-14 3.7E-19 123.5 -1.1 75 35-115 34-108 (219)
26 TIGR01622 SF-CC1 splicing fact 99.4 5.7E-13 1.2E-17 124.2 8.8 73 35-114 88-160 (457)
27 PLN03121 nucleic acid binding 99.4 6.8E-13 1.5E-17 117.5 8.4 70 36-115 5-74 (243)
28 PLN03213 repressor of silencin 99.4 6.5E-13 1.4E-17 127.2 8.6 71 35-115 9-81 (759)
29 KOG0148|consensus 99.4 5.2E-13 1.1E-17 120.0 6.3 72 38-115 64-135 (321)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.1E-12 2.5E-17 124.9 9.0 71 35-116 274-345 (481)
31 KOG0123|consensus 99.4 4.5E-13 9.8E-18 125.0 6.0 111 35-178 75-185 (369)
32 KOG0113|consensus 99.4 1.5E-12 3.3E-17 118.1 8.5 82 28-115 93-174 (335)
33 KOG0105|consensus 99.4 1.1E-12 2.3E-17 113.0 6.9 99 35-142 5-139 (241)
34 KOG0108|consensus 99.3 1.6E-12 3.4E-17 123.7 7.4 73 37-115 19-91 (435)
35 KOG0148|consensus 99.3 2.4E-12 5.3E-17 115.7 7.8 72 31-114 159-230 (321)
36 KOG0149|consensus 99.3 1.6E-12 3.5E-17 114.6 6.5 72 35-113 11-82 (247)
37 KOG4207|consensus 99.3 2.1E-12 4.7E-17 112.6 6.4 76 34-115 11-86 (256)
38 smart00361 RRM_1 RNA recogniti 99.3 4.2E-12 9.1E-17 91.2 6.8 59 50-114 2-67 (70)
39 KOG0117|consensus 99.3 2E-11 4.3E-16 115.6 9.1 78 32-115 79-157 (506)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.9E-11 4.2E-16 116.5 8.7 67 36-112 96-162 (481)
41 KOG0147|consensus 99.2 5.9E-12 1.3E-16 121.2 5.0 71 39-115 281-351 (549)
42 KOG0121|consensus 99.2 2.1E-11 4.6E-16 99.7 6.7 78 31-114 31-108 (153)
43 KOG0123|consensus 99.2 1.1E-11 2.4E-16 115.7 5.3 122 32-181 163-291 (369)
44 TIGR01648 hnRNP-R-Q heterogene 99.2 3.3E-11 7.1E-16 118.2 8.8 67 35-115 232-300 (578)
45 KOG0124|consensus 99.2 1E-11 2.2E-16 115.7 5.0 74 36-115 113-186 (544)
46 KOG0114|consensus 99.2 4.3E-11 9.3E-16 94.8 7.8 73 34-115 16-88 (124)
47 KOG0145|consensus 99.2 2.4E-11 5.2E-16 109.3 6.5 77 33-115 38-114 (360)
48 PF13893 RRM_5: RNA recognitio 99.2 5.8E-11 1.3E-15 81.1 6.6 52 53-115 1-52 (56)
49 KOG0131|consensus 99.2 2.5E-11 5.4E-16 103.9 5.2 76 33-114 6-81 (203)
50 KOG0111|consensus 99.1 1.6E-11 3.4E-16 108.3 2.8 75 35-115 9-83 (298)
51 KOG0130|consensus 99.1 8E-11 1.7E-15 97.2 5.7 78 32-115 68-145 (170)
52 KOG0146|consensus 99.0 2.5E-10 5.5E-15 103.0 5.9 75 34-114 283-357 (371)
53 KOG0145|consensus 99.0 5.1E-10 1.1E-14 100.8 7.6 72 38-115 280-351 (360)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.0 8.1E-10 1.8E-14 104.3 7.2 68 35-115 174-253 (509)
55 KOG0144|consensus 98.9 5.2E-10 1.1E-14 105.9 4.1 72 35-113 123-195 (510)
56 KOG0144|consensus 98.9 1.7E-09 3.6E-14 102.4 6.9 71 37-113 35-106 (510)
57 KOG0131|consensus 98.9 1.2E-09 2.7E-14 93.6 5.3 79 33-117 93-172 (203)
58 KOG0127|consensus 98.9 3.8E-09 8.3E-14 102.4 8.2 72 36-114 117-188 (678)
59 KOG0127|consensus 98.9 2.6E-09 5.7E-14 103.5 6.7 73 37-115 6-78 (678)
60 KOG0124|consensus 98.9 2.7E-09 6E-14 99.7 6.3 76 34-115 208-283 (544)
61 KOG0117|consensus 98.9 2.7E-09 5.8E-14 101.3 6.3 67 34-114 257-323 (506)
62 KOG0106|consensus 98.8 2.2E-09 4.7E-14 94.0 3.3 62 38-113 3-64 (216)
63 KOG0415|consensus 98.8 5.1E-09 1.1E-13 97.5 5.6 77 33-115 236-312 (479)
64 KOG0109|consensus 98.8 4.8E-09 1E-13 95.5 4.2 64 37-114 3-66 (346)
65 KOG4661|consensus 98.8 2.4E-08 5.2E-13 97.6 8.3 86 24-115 393-478 (940)
66 KOG0151|consensus 98.7 2.9E-08 6.2E-13 98.7 7.6 79 34-115 172-250 (877)
67 KOG0110|consensus 98.7 4.9E-08 1.1E-12 96.7 8.1 80 32-114 511-590 (725)
68 KOG0533|consensus 98.7 5.4E-08 1.2E-12 86.7 7.5 73 35-114 82-154 (243)
69 KOG4206|consensus 98.7 5.7E-08 1.2E-12 85.3 7.4 72 36-116 9-84 (221)
70 KOG0110|consensus 98.6 3.3E-08 7.2E-13 97.9 4.8 74 36-115 613-686 (725)
71 KOG4205|consensus 98.6 4.8E-08 1E-12 89.7 4.4 63 35-103 5-67 (311)
72 KOG4660|consensus 98.6 6.4E-08 1.4E-12 93.8 4.8 77 28-115 67-143 (549)
73 KOG4209|consensus 98.5 1.4E-07 3E-12 83.3 5.4 78 31-115 96-173 (231)
74 KOG0116|consensus 98.5 2.2E-07 4.7E-12 88.5 5.8 72 36-114 288-359 (419)
75 KOG0226|consensus 98.5 4.3E-07 9.4E-12 81.5 7.3 105 4-114 148-262 (290)
76 KOG0109|consensus 98.4 2.1E-07 4.6E-12 84.9 4.5 68 33-114 75-142 (346)
77 KOG0132|consensus 98.4 3.4E-07 7.4E-12 91.8 6.4 92 32-138 417-522 (894)
78 KOG4212|consensus 98.4 4.6E-07 9.9E-12 86.6 6.9 70 39-115 47-117 (608)
79 KOG0153|consensus 98.4 4.3E-07 9.3E-12 84.3 5.6 69 35-115 227-296 (377)
80 PF04059 RRM_2: RNA recognitio 98.3 2.9E-06 6.2E-11 66.0 8.3 77 36-118 1-79 (97)
81 KOG0146|consensus 98.3 1.3E-06 2.8E-11 79.3 6.6 74 35-115 18-92 (371)
82 KOG4212|consensus 98.3 1E-06 2.2E-11 84.2 6.0 73 32-115 532-604 (608)
83 KOG1548|consensus 98.3 2.2E-06 4.8E-11 79.7 7.7 75 34-115 132-214 (382)
84 KOG4205|consensus 98.2 1.2E-06 2.6E-11 80.6 5.0 70 36-111 97-170 (311)
85 KOG0120|consensus 98.1 1.8E-06 3.8E-11 83.8 3.6 78 32-115 285-362 (500)
86 PF08777 RRM_3: RNA binding mo 97.9 3.4E-05 7.3E-10 60.4 6.1 59 37-107 2-60 (105)
87 KOG4210|consensus 97.9 1.5E-05 3.2E-10 72.5 4.6 89 20-115 168-257 (285)
88 KOG4454|consensus 97.6 3.2E-05 6.9E-10 68.6 2.7 72 36-115 9-80 (267)
89 KOG2314|consensus 97.6 0.00012 2.7E-09 71.9 6.3 73 32-112 54-133 (698)
90 COG5175 MOT2 Transcriptional r 97.5 0.00019 4.1E-09 67.2 6.0 80 32-115 110-196 (480)
91 KOG1457|consensus 97.5 0.00037 8.1E-09 62.2 7.3 71 35-110 33-103 (284)
92 PF11608 Limkain-b1: Limkain b 97.3 0.00085 1.8E-08 51.5 6.4 63 37-115 3-70 (90)
93 KOG1190|consensus 97.2 0.00084 1.8E-08 64.1 6.7 69 36-115 297-366 (492)
94 KOG0106|consensus 97.2 0.00021 4.5E-09 62.9 2.1 68 35-116 98-165 (216)
95 KOG0147|consensus 97.1 0.0002 4.3E-09 69.9 1.8 73 35-114 178-250 (549)
96 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0012 2.6E-08 45.7 4.9 52 37-101 2-53 (53)
97 KOG1457|consensus 97.0 0.00084 1.8E-08 60.0 4.6 69 36-114 210-278 (284)
98 KOG0115|consensus 97.0 0.00083 1.8E-08 60.6 4.1 63 37-106 32-94 (275)
99 PF08675 RNA_bind: RNA binding 96.9 0.0043 9.3E-08 47.5 7.3 58 34-106 7-64 (87)
100 KOG1995|consensus 96.9 0.0014 3.1E-08 61.2 5.1 77 32-114 62-146 (351)
101 KOG1548|consensus 96.8 0.0021 4.7E-08 60.1 5.8 76 30-115 259-345 (382)
102 KOG1456|consensus 96.6 0.0055 1.2E-07 58.2 7.0 71 35-116 286-357 (494)
103 KOG4211|consensus 96.6 0.0063 1.4E-07 59.1 7.3 58 36-102 10-67 (510)
104 KOG4307|consensus 96.5 0.0075 1.6E-07 61.0 7.0 76 32-114 863-939 (944)
105 KOG4206|consensus 96.3 0.021 4.5E-07 50.6 7.9 66 34-110 144-209 (221)
106 KOG4211|consensus 96.2 0.012 2.6E-07 57.2 6.7 71 34-112 101-172 (510)
107 KOG1996|consensus 96.1 0.01 2.2E-07 55.0 5.4 64 50-118 300-363 (378)
108 KOG1855|consensus 95.8 0.01 2.2E-07 57.0 4.0 73 35-107 230-309 (484)
109 KOG2193|consensus 95.8 0.015 3.2E-07 56.2 5.0 64 38-114 3-68 (584)
110 KOG0128|consensus 95.7 0.0028 6.1E-08 64.8 -0.0 63 38-106 669-731 (881)
111 KOG0120|consensus 95.7 0.025 5.4E-07 55.4 6.4 61 52-115 425-485 (500)
112 KOG1456|consensus 95.3 0.051 1.1E-06 51.9 6.8 79 29-115 399-478 (494)
113 KOG0105|consensus 95.1 0.063 1.4E-06 47.1 6.4 64 35-111 114-177 (241)
114 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.033 7.3E-07 47.3 4.4 78 33-114 4-85 (176)
115 KOG4676|consensus 94.8 0.032 7E-07 53.3 4.2 76 35-114 6-81 (479)
116 PF05172 Nup35_RRM: Nup53/35/4 94.8 0.086 1.9E-06 41.2 5.9 76 36-114 6-83 (100)
117 PF08952 DUF1866: Domain of un 94.8 0.075 1.6E-06 44.4 5.8 49 52-115 52-100 (146)
118 KOG0129|consensus 94.6 0.11 2.4E-06 50.9 7.1 62 35-99 258-321 (520)
119 KOG1190|consensus 94.2 0.17 3.6E-06 48.8 7.3 68 36-113 414-481 (492)
120 KOG0128|consensus 93.9 0.028 6.2E-07 57.7 1.8 71 36-113 736-806 (881)
121 KOG0112|consensus 93.8 0.14 3.1E-06 53.1 6.4 72 32-115 451-522 (975)
122 KOG2202|consensus 93.7 0.032 6.9E-07 50.4 1.5 57 52-115 84-141 (260)
123 KOG4849|consensus 93.2 0.2 4.3E-06 47.6 5.8 74 35-114 79-154 (498)
124 KOG0112|consensus 92.6 0.054 1.2E-06 56.1 1.4 74 32-112 368-441 (975)
125 KOG0129|consensus 92.4 0.45 9.7E-06 46.8 7.2 66 32-103 366-432 (520)
126 KOG4307|consensus 91.3 0.81 1.7E-05 46.9 7.8 75 33-114 431-506 (944)
127 KOG2891|consensus 91.2 0.29 6.3E-06 45.4 4.4 91 20-110 133-248 (445)
128 KOG1365|consensus 91.1 0.22 4.7E-06 47.8 3.5 71 36-113 280-353 (508)
129 KOG2068|consensus 90.9 0.16 3.6E-06 47.3 2.5 78 35-115 76-156 (327)
130 PF04847 Calcipressin: Calcipr 90.0 0.69 1.5E-05 39.8 5.4 77 50-138 9-109 (184)
131 PF10309 DUF2414: Protein of u 89.5 1.7 3.7E-05 31.3 6.3 55 35-104 4-62 (62)
132 KOG1365|consensus 89.3 1.3 2.9E-05 42.6 7.2 63 32-102 157-224 (508)
133 KOG2416|consensus 89.2 0.34 7.4E-06 48.6 3.2 66 32-109 440-506 (718)
134 KOG0804|consensus 87.8 2 4.3E-05 42.0 7.3 68 36-111 74-142 (493)
135 PF03880 DbpA: DbpA RNA bindin 86.2 3 6.5E-05 30.2 6.0 54 46-114 11-69 (74)
136 KOG2253|consensus 85.4 0.61 1.3E-05 47.1 2.6 68 32-114 36-103 (668)
137 PF07576 BRAP2: BRCA1-associat 83.3 11 0.00024 29.9 8.4 70 36-113 13-83 (110)
138 PF11767 SET_assoc: Histone ly 79.2 7.3 0.00016 28.3 5.6 51 47-113 11-62 (66)
139 KOG4210|consensus 79.1 2.3 4.9E-05 38.9 3.6 73 35-113 87-159 (285)
140 KOG2591|consensus 78.9 5.6 0.00012 40.0 6.5 73 29-114 168-244 (684)
141 KOG2318|consensus 78.3 6.1 0.00013 39.8 6.5 79 33-112 171-296 (650)
142 COG0724 RNA-binding proteins ( 76.8 4.2 9.2E-05 32.9 4.3 76 32-113 221-296 (306)
143 PF10567 Nab6_mRNP_bdg: RNA-re 76.1 2.1 4.5E-05 39.7 2.5 49 20-72 3-51 (309)
144 KOG4660|consensus 74.5 5.1 0.00011 39.9 4.9 43 60-108 413-455 (549)
145 TIGR03636 L23_arch archaeal ri 74.1 10 0.00022 28.3 5.3 59 37-104 14-74 (77)
146 PRK14548 50S ribosomal protein 73.3 7 0.00015 29.7 4.4 62 34-104 18-81 (84)
147 PF15023 DUF4523: Protein of u 72.5 10 0.00023 32.1 5.6 61 33-106 83-147 (166)
148 KOG4285|consensus 72.5 5.8 0.00013 37.2 4.5 65 36-114 197-261 (350)
149 KOG2295|consensus 69.3 0.85 1.8E-05 45.5 -1.7 75 34-114 229-303 (648)
150 KOG4574|consensus 62.9 4.3 9.3E-05 42.5 1.8 59 40-110 302-360 (1007)
151 PF15513 DUF4651: Domain of un 59.7 17 0.00037 26.3 3.9 22 51-72 9-30 (62)
152 COG5507 Uncharacterized conser 51.2 13 0.00028 29.6 2.3 20 85-104 67-86 (117)
153 COG2441 Predicted butyrate kin 49.3 10 0.00022 35.5 1.7 78 41-144 283-369 (374)
154 KOG4483|consensus 44.8 39 0.00085 33.0 4.9 58 33-103 388-446 (528)
155 KOG4676|consensus 43.6 6 0.00013 38.3 -0.7 63 37-110 152-214 (479)
156 KOG2135|consensus 38.7 17 0.00038 35.9 1.6 64 40-116 376-440 (526)
157 PF06881 Elongin_A: RNA polyme 38.5 21 0.00046 27.6 1.8 30 130-159 63-96 (109)
158 PF07026 DUF1317: Protein of u 36.8 51 0.0011 23.7 3.3 25 85-109 21-50 (60)
159 PRK05738 rplW 50S ribosomal pr 36.0 98 0.0021 23.6 5.0 36 36-71 19-56 (92)
160 KOG4410|consensus 34.7 1.2E+02 0.0026 28.6 6.2 49 36-95 330-378 (396)
161 KOG2193|consensus 33.9 2.7 5.9E-05 41.1 -4.7 72 32-112 76-147 (584)
162 PF02714 DUF221: Domain of unk 33.9 47 0.001 29.8 3.5 42 87-138 1-45 (325)
163 KOG1295|consensus 31.3 57 0.0012 31.3 3.6 73 35-111 6-79 (376)
164 TIGR03293 PhnG_redo phosphonat 31.1 1.3E+02 0.0028 24.9 5.3 70 63-156 63-132 (144)
165 PF06754 PhnG: Phosphonate met 30.9 1.1E+02 0.0024 25.3 4.9 70 63-156 64-133 (146)
166 COG0030 KsgA Dimethyladenosine 28.6 61 0.0013 29.4 3.3 34 37-70 96-129 (259)
167 PTZ00191 60S ribosomal protein 27.8 99 0.0021 25.9 4.1 64 32-104 77-142 (145)
168 COG0106 HisA Phosphoribosylfor 27.3 75 0.0016 28.7 3.6 62 36-107 98-159 (241)
169 PF07292 NID: Nmi/IFP 35 domai 25.9 34 0.00074 26.2 1.0 33 34-73 50-82 (88)
170 cd00187 TOP4c DNA Topoisomeras 25.4 5.6E+02 0.012 25.0 9.4 123 36-170 225-362 (445)
171 COG3624 PhnG Uncharacterized e 23.5 2.8E+02 0.006 23.5 5.9 73 62-158 66-140 (151)
172 PF00276 Ribosomal_L23: Riboso 22.2 63 0.0014 24.4 1.8 58 35-94 18-83 (91)
173 PF00398 RrnaAD: Ribosomal RNA 21.4 78 0.0017 27.9 2.5 24 35-58 96-119 (262)
174 cd00027 BRCT Breast Cancer Sup 21.1 1.2E+02 0.0026 19.3 2.9 26 38-63 3-28 (72)
175 PF07876 Dabb: Stress responsi 20.9 3.2E+02 0.007 19.5 5.9 55 40-97 5-67 (97)
176 TIGR00082 rbfA ribosome-bindin 20.0 1E+02 0.0022 24.3 2.7 65 61-138 33-100 (114)
No 1
>KOG3152|consensus
Probab=100.00 E-value=4.9e-49 Score=346.97 Aligned_cols=150 Identities=44% Similarity=0.840 Sum_probs=139.3
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCC------CCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKP------GEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tg------ksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
++.++|+||||||||+|++..||+||++||+|+||||+|++.+. +.++++..|.+|||||.++++|+++|+.||
T Consensus 70 kkrk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 70 KKRKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred hhccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 34499999999999999999999999999999999999998761 112245679999999999999999999999
Q ss_pred CCccCCcccccccccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHhHHHHHHhccc
Q psy3854 106 NTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREALYFSNNLDVADRIQKKNGKK 181 (222)
Q Consensus 106 g~~i~Grk~~~~~~~lWnikyL~~fkW~~L~e~~a~ek~~R~~rLr~e~~qakke~n~ylknld~~~~~~k~~~~~ 181 (222)
|++|||++.+.|++|||||||||+|+|.||+|++|||+++|++||..|++||++++.+|+.|||+++.+++++.+.
T Consensus 150 n~~Iggkk~S~~~~dlWNmKYLprFKW~hLTEqiayE~avrk~RL~~EvsQArk~~~ff~~~vE~~k~~~~i~~k~ 225 (278)
T KOG3152|consen 150 NTPIGGKKKSPFRDDLWNMKYLPRFKWVHLTEQIAYENAVRKQRLNVEVSQARKEAAFFLRNVEQGKMFEKIDKKM 225 (278)
T ss_pred CCccCCCCCCchHHhhhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887764
No 2
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=4.2e-18 Score=118.26 Aligned_cols=69 Identities=25% Similarity=0.523 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 39 VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
|||+|||+++++++|+++|++||.|..+.++++ .+++++ ++|||+|.++++|+.|++.|||..++|+++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~------~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSK------GYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEE------EEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-cccccc------ceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999999997 446666 999999999999999999999999999975
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=5e-17 Score=133.03 Aligned_cols=79 Identities=11% Similarity=0.254 Sum_probs=74.1
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.-....+.|||+|||+.+++++|+++|++||.|.+|.|+.|..+++++ |||||+|.+.++|+.|++.|||..|.
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k------GfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR------GFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcc------eEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345567789999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 103 Gr~l~ 107 (144)
T PLN03134 103 GRHIR 107 (144)
T ss_pred CEEEE
Confidence 99873
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.1e-16 Score=143.67 Aligned_cols=75 Identities=13% Similarity=0.297 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.+|||+|||+.+++++|+++|++||+|.+|+|++|..+|+++ |||||+|.+.++|..|++.|||..|.|+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~------g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSL------GYGFVNYVRPEDAEKAVNSLNGLRLQNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccc------eEEEEEECcHHHHHHHHhhcccEEECCeeE
Confidence 46799999999999999999999999999999999999999998 999999999999999999999999999988
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 76 ~ 76 (352)
T TIGR01661 76 K 76 (352)
T ss_pred E
Confidence 4
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=1.2e-16 Score=143.53 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+|||+|||+.+++++|+++|++||.|.+|.|+.|..+|++| |||||+|.+.++|..|+..|||..|+||.+.
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~sk------G~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCK------GYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCcc------ceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 69999999999999999999999999999999999899999 9999999999999999999999999999985
No 6
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=6.5e-16 Score=108.94 Aligned_cols=69 Identities=33% Similarity=0.559 Sum_probs=63.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 39 VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
|||+|||+.+++++|+++|+.||.|..|.+..+.. +.++ |+|||+|.+.++|+.|+..+||..|+|+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~------~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSR------GFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEE------EEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccC------CEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999876 7766 999999999999999999999999999975
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=4.2e-15 Score=142.79 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=84.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.++.+ .+|+++ |||||+|.+.++|.+|+..|||..|+|+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~------g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSR------GFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcC------CeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 445678999999999999999999999999999999998 568888 9999999999999999999999999999
Q ss_pred ccccccccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy3854 113 KRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAE 156 (222)
Q Consensus 113 k~~~~~~~lWnikyL~~fkW~~L~e~~a~ek~~R~~rLr~e~~q 156 (222)
++ ...+|..+..|.+.+...+.|
T Consensus 355 ~l---------------------~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 355 PL---------------------YVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred ee---------------------EEEeccCcHHHHHHHHHHHHH
Confidence 86 223567777888888877765
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=2e-15 Score=144.91 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=101.2
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID- 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~- 110 (222)
.....++|||+|||+.+++++|+++|++||+|.+|.++.+. +|+++ |||||+|.+.++|.+|++.|||..|.
T Consensus 174 ~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~------G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 174 PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSR------GFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcc------cEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 34456789999999999999999999999999999999885 47777 99999999999999999999999999
Q ss_pred ---CcccccccccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHchHHhHHHHHHhc
Q psy3854 111 ---CRKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKRE-------ALYFSNNLDVADRIQKKNG 179 (222)
Q Consensus 111 ---Grk~~~~~~~lWnikyL~~fkW~~L~e~~a~ek~~R~~rLr~e~~qakke-------~n~ylknld~~~~~~k~~~ 179 (222)
|+.+ ....++.+.+|.+.++..+.+.+.+ .++|+.||+.....+.+++
T Consensus 247 ~~~g~~l---------------------~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~ 304 (562)
T TIGR01628 247 AKEGKKL---------------------YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRE 304 (562)
T ss_pred cccceee---------------------EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHH
Confidence 6653 2235566777777787777777665 3799999999988888775
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=8e-15 Score=135.48 Aligned_cols=77 Identities=9% Similarity=0.180 Sum_probs=72.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....++|||++||+++++++|+++|+.||+|.+|.|+.|..+++++ |||||+|.+.++|+.|++.|||..|.++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~sr------GyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSF------GYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccC------cEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 3456789999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 178 ~i~ 180 (346)
T TIGR01659 178 RLK 180 (346)
T ss_pred eee
Confidence 874
No 10
>KOG0125|consensus
Probab=99.56 E-value=5.1e-15 Score=135.45 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=80.5
Q ss_pred ccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 30 NSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 30 ~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
...+..+..|||||||+.+++.||+.||.+||+|.+|.|+.+++. || |||||.|++..||++|-+.|||+.|
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SK------GFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SK------GFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CC------ccceEEecChhhHHHHHHHhhccee
Confidence 346668889999999999999999999999999999999998763 55 9999999999999999999999999
Q ss_pred CCccccc--ccccccc--cccCCC-cccchhh
Q psy3854 110 DCRKRSK--HYDFIWN--FKYLPR-FKWIHLN 136 (222)
Q Consensus 110 ~Grk~~~--~~~~lWn--ikyL~~-fkW~~L~ 136 (222)
.||++-. -..-+-| .+-||. -.|..+.
T Consensus 162 EGRkIEVn~ATarV~n~K~~v~p~~~g~~~~~ 193 (376)
T KOG0125|consen 162 EGRKIEVNNATARVHNKKKKVLPYPNGWKLLP 193 (376)
T ss_pred eceEEEEeccchhhccCCcccCCCcccccccc
Confidence 9999831 0011112 244555 5587764
No 11
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=1.9e-14 Score=97.59 Aligned_cols=69 Identities=22% Similarity=0.423 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.|||++||+.+++++|+++|++||.|..+.+..+. +.++ |+|||+|.+.++|..|+..|||..+.|+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~------~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSK------GFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCC------ceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 48999999999999999999999999999998876 4555 999999999999999999999999999875
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=1.9e-14 Score=141.50 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++|||||||+.+++++|+++|++||+|.+|+|+.|..+|++| |||||+|.+.++|..|+..|||..|+|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgksk------GfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK------GFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcC------CeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 456789999999999999999999999999999999999999998 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 179 Ik 180 (612)
T TIGR01645 179 IK 180 (612)
T ss_pred ee
Confidence 74
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=3e-14 Score=140.07 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+++++++|+++|+.||+|.+|+|+++..+|++| |||||+|.+.++|..|+..|||..|+|+.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksK------GfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK------GYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcC------CeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 35689999999999999999999999999999999999888888 999999999999999999999999999988
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 277 r 277 (612)
T TIGR01645 277 R 277 (612)
T ss_pred E
Confidence 5
No 14
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=6.6e-14 Score=114.79 Aligned_cols=74 Identities=19% Similarity=0.416 Sum_probs=71.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||||||+.+++++|+++|.+||.|.+|.+..+..+|+++ |+|||+|.+.++|..|+..|||..+.|+++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~------g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSR------GFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccC------ceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 5899999999999999999999999999999999998889988 9999999999999999999999999999973
No 15
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=8.9e-14 Score=93.70 Aligned_cols=68 Identities=25% Similarity=0.453 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 41 LSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 41 IsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
|++||+.+++++|+++|++||.|..|.+.++..+++++ |+|||+|.+.++|..|+..|||..++|+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~------~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSK------GFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCC------ceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 68999999999999999999999999999887767777 999999999999999999999999999875
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=6.4e-14 Score=132.01 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
....|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++ |||||+|.+.++|..|+..|||..|+|+++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~------g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSK------GYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcC------eEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45789999999999999999999999999999999998889888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 368 ~ 368 (509)
T TIGR01642 368 H 368 (509)
T ss_pred E
Confidence 4
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=8e-14 Score=128.84 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|++|..++++| |+|||+|.+.++|..|++.|||+.+.|..
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~k------G~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPR------GVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccc------eEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 356789999999999999999999999999999999999899988 99999999999999999999999987753
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=1.2e-13 Score=128.85 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|+++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~------g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSK------GFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccc------eEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 5789999999999999999999999999999999999888888 9999999999999999999999999999874
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=123.42 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=64.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
...|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ++ |||||+|.+.++|+.|+ .|||..|.|+.+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~------GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RS------QIAYVTFKDPQGAETAL-LLSGATIVDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CC------CEEEEEeCcHHHHHHHH-HhcCCeeCCceEE
Confidence 45799999999999999999999999999999988754 23 89999999999999999 5999999999974
No 20
>KOG4208|consensus
Probab=99.47 E-value=7.9e-14 Score=120.71 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=73.0
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcC-cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRF-GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~f-G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.....|++||.+||..+.+..+...|.+| |.|.+++|.++..||.|| |||||||+++++|+-|+++|||+.|+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSK------gYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSK------GYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcC------ceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 44578999999999999999999999999 899999999999999999 99999999999999999999999999
Q ss_pred Cccc
Q psy3854 111 CRKR 114 (222)
Q Consensus 111 Grk~ 114 (222)
|+-+
T Consensus 119 e~lL 122 (214)
T KOG4208|consen 119 EHLL 122 (214)
T ss_pred hhee
Confidence 9876
No 21
>KOG0122|consensus
Probab=99.46 E-value=3e-13 Score=119.83 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=69.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
-......|-|.|||.+|++++|++||-+||.|.||||.+|..||.+| |||||.|.+.++|.+|+..|||.-+..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~k------GFAFVtF~sRddA~rAI~~LnG~gyd~ 258 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSK------GFAFVTFESRDDAARAIADLNGYGYDN 258 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCccc------ceEEEEEecHHHHHHHHHHccCcccce
Confidence 34467789999999999999999999999999999999999999999 999999999999999999999986654
Q ss_pred cc
Q psy3854 112 RK 113 (222)
Q Consensus 112 rk 113 (222)
--
T Consensus 259 LI 260 (270)
T KOG0122|consen 259 LI 260 (270)
T ss_pred EE
Confidence 43
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.44 E-value=6.3e-13 Score=130.19 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=68.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-C
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID-C 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~-G 111 (222)
....++|||+|||+++++++|+++|++||.|..|.|++| .+|++| |||||+|.+.++|+.|++.|||..|. |
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sR------GfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNR------GYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCcc------ceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 345678999999999999999999999999999999999 779998 99999999999999999999999885 6
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
+.+
T Consensus 128 r~l 130 (578)
T TIGR01648 128 RLL 130 (578)
T ss_pred ccc
Confidence 654
No 23
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=7.8e-13 Score=89.97 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
+|||++||+.+++++|+++|+.||.|.++.+..+..+ ..+ |+|||+|.+.++|..|+..|+|..+.|+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~------~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSK------GFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-Ccc------eEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4899999999999999999999999999999987653 334 899999999999999999999999999875
No 24
>KOG0107|consensus
Probab=99.43 E-value=1.9e-13 Score=116.24 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+.||||||+..++..+|..+|+.||+|-+|.|...+. ||+||||+|+.+|..|+..|||+.|.|..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----------GfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----------GFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----------CceEEeccCcccHHHHHhhcCCccccCce
Confidence 3467899999999999999999999999999999998765 89999999999999999999999998866
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 77 ~ 77 (195)
T KOG0107|consen 77 I 77 (195)
T ss_pred E
Confidence 4
No 25
>KOG0126|consensus
Probab=99.41 E-value=1.7e-14 Score=123.51 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=72.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...-||||+||+.+|+.+|--.||+||+|..|.|++|..||+|| ||+|..|+|.+..-.|+..|||..|.||.+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSK------GFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSK------GFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCccc------ceEEEEecCccceEEEEeccCCceecceeE
Confidence 46779999999999999999999999999999999999999999 999999999999999999999999999998
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 108 r 108 (219)
T KOG0126|consen 108 R 108 (219)
T ss_pred E
Confidence 5
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=5.7e-13 Score=124.21 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++.+|+++|++||.|..|.|+.+..+|+++ |||||+|.+.++|.+|+. |||..+.|+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~sk------g~afVeF~~~e~A~~Al~-l~g~~~~g~~i 160 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSK------GVAYVEFYDVESVIKALA-LTGQMLLGRPI 160 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcc------eEEEEEECCHHHHHHHHH-hCCCEECCeee
Confidence 35679999999999999999999999999999999999889888 999999999999999995 99999999876
No 27
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=6.8e-13 Score=117.52 Aligned_cols=70 Identities=10% Similarity=0.190 Sum_probs=63.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||+||++.+++.+|+++|+.||+|.+|+|++|..+ + ++|||+|.+++.|+.|+ .|||..|.++.+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~------gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~ 74 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---A------CTAYVTFKDAYALETAV-LLSGATIVDQRVC 74 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---c------eEEEEEECCHHHHHHHH-hcCCCeeCCceEE
Confidence 357999999999999999999999999999999988433 3 89999999999998888 8999999999874
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=6.5e-13 Score=127.25 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecch--HHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKK--KVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk--~~Ak~A~~~LNg~~i~Gr 112 (222)
....||||||++.+++++|+.+|+.||.|.+|.|++ .+| | |||||+|... ..+.+|+..|||..+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--R------GFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--R------SFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--C------ceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 346799999999999999999999999999999984 456 4 9999999987 789999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 79 ~LK 81 (759)
T PLN03213 79 RLR 81 (759)
T ss_pred eeE
Confidence 974
No 29
>KOG0148|consensus
Probab=99.38 E-value=5.2e-13 Score=119.99 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=70.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
-||||-|.+.++-++||+.|.+||+|..++|++|..|++|| |||||.|.++.+|+.||..|||+-||+|.++
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsK------GYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSK------GYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCccc------ceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 48999999999999999999999999999999999999999 9999999999999999999999999999874
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.1e-12 Score=124.91 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=65.3
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+|||+|||+ .+++++|++||+.||.|.+|+|+++. + |+|||+|.+.++|..|+..|||..|.|++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~------g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----K------ETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----C------CEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 456899999998 69999999999999999999999863 3 89999999999999999999999999999
Q ss_pred ccc
Q psy3854 114 RSK 116 (222)
Q Consensus 114 ~~~ 116 (222)
+..
T Consensus 343 l~v 345 (481)
T TIGR01649 343 LRV 345 (481)
T ss_pred EEE
Confidence 853
No 31
>KOG0123|consensus
Probab=99.38 E-value=4.5e-13 Score=124.96 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=96.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+..|||.|||++++...|..+|+.||+|.+|+|+.+.. | +| || ||+|++.+.|+.|++.|||..+.|+++
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~k------g~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SK------GY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ce------ee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 444599999999999999999999999999999999987 4 66 89 999999999999999999999999996
Q ss_pred ccccccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHhHHHHHHh
Q psy3854 115 SKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREALYFSNNLDVADRIQKKN 178 (222)
Q Consensus 115 ~~~~~~lWnikyL~~fkW~~L~e~~a~ek~~R~~rLr~e~~qakke~n~ylknld~~~~~~k~~ 178 (222)
|++ ++..+.+|.+.+.. .+++..+.|++|.........+.
T Consensus 146 --~vg-------------------~~~~~~er~~~~~~---~~~~~t~v~vk~~~~~~~~~~l~ 185 (369)
T KOG0123|consen 146 --YVG-------------------LFERKEEREAPLGE---YKKRFTNVYVKNLEEDSTDEELK 185 (369)
T ss_pred --EEe-------------------eccchhhhcccccc---hhhhhhhhheeccccccchHHHH
Confidence 554 88888899888864 78899999999998554444443
No 32
>KOG0113|consensus
Probab=99.37 E-value=1.5e-12 Score=118.09 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=75.9
Q ss_pred CcccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 28 TENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 28 ~~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
++...-....+|||+.|++++++++|+..|+.||+|.+|.|+.|..||+|| |||||||++..+.+.|....+|.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgksk------GYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSK------GYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCcc------ceEEEEeccHHHHHHHHHhccCc
Confidence 344455677899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
.|.|+.+-
T Consensus 167 ~Idgrri~ 174 (335)
T KOG0113|consen 167 KIDGRRIL 174 (335)
T ss_pred eecCcEEE
Confidence 99999873
No 33
>KOG0105|consensus
Probab=99.37 E-value=1.1e-12 Score=113.02 Aligned_cols=99 Identities=13% Similarity=0.281 Sum_probs=79.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..+.|||||||+++.+.+|..||.+||.|..|.|..-.. .-.|+||||+|+++|+.||-.-||..++|-.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---------~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---------CCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 467899999999999999999999999999999954321 11799999999999999999999988876544
Q ss_pred c-----------------------------------cccccccccccCC-CcccchhhHHHHHH
Q psy3854 115 S-----------------------------------KHYDFIWNFKYLP-RFKWIHLNERLAYE 142 (222)
Q Consensus 115 ~-----------------------------------~~~~~lWnikyL~-~fkW~~L~e~~a~e 142 (222)
. +..++..-|..|| .-+|++|.+++-.-
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea 139 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA 139 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh
Confidence 2 2334445566776 78899999997543
No 34
>KOG0108|consensus
Probab=99.35 E-value=1.6e-12 Score=123.67 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..|||||||+.+++++|..+|+..|.|.+++++.|..+|+.| |||||+|.+.++|..|++.|||..++|+++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~------G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPK------GFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcC------ceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 789999999999999999999999999999999999999999 9999999999999999999999999999973
No 35
>KOG0148|consensus
Probab=99.34 E-value=2.4e-12 Score=115.70 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=66.8
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
......+.||+|+|+..++++.||+.|++||.|..|++-++. ||+||.|++|+.|.+||..|||+.|+
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------------GYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------------GYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------------ceEEEEecchhhHHHHHHHhcCceeC
Confidence 355677899999999999999999999999999999998874 89999999999999999999999999
Q ss_pred Cccc
Q psy3854 111 CRKR 114 (222)
Q Consensus 111 Grk~ 114 (222)
|...
T Consensus 227 G~~V 230 (321)
T KOG0148|consen 227 GQLV 230 (321)
T ss_pred ceEE
Confidence 9864
No 36
>KOG0149|consensus
Probab=99.34 E-value=1.6e-12 Score=114.56 Aligned_cols=72 Identities=21% Similarity=0.333 Sum_probs=65.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..+.||||+||+..+.+.||+.|++||+|....|+.|+.+|||| |||||.|.|.+.|.+|+...|= .|+||+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rsk------GyGfVTf~d~~aa~rAc~dp~p-iIdGR~ 82 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSK------GYGFVTFRDAEAATRACKDPNP-IIDGRK 82 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcccc------ceeeEEeecHHHHHHHhcCCCC-cccccc
Confidence 56789999999999999999999999999999999999999999 9999999999999999987663 234443
No 37
>KOG4207|consensus
Probab=99.33 E-value=2.1e-12 Score=112.57 Aligned_cols=76 Identities=14% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|-|-||-+.+++++|+.+|.+||.|+.|||..|..|+.++ |||||-|.++.+|+.|++.|+|..+.|+.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sR------gFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSR------GFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceeccccccccccc------ceeEEEeeecchHHHHHHhhcceeeccce
Confidence 356678999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 85 lr 86 (256)
T KOG4207|consen 85 LR 86 (256)
T ss_pred ee
Confidence 74
No 38
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=4.2e-12 Score=91.20 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=52.5
Q ss_pred HHHHHHHhh----cCcceeEEE-EecCCCC--CCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 50 VTQLTEFMS----RFGEVGRVY-LMPKKRK--PGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 50 e~~Lr~lFs----~fG~I~rv~-L~~d~~t--gksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
+++|+++|+ +||.|++|. +..+..+ ++++ |+|||+|.+.++|..|+..|||..+.|+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~r------G~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKR------GNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCc------EEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 578899999 999999996 6555555 7787 999999999999999999999999999986
No 39
>KOG0117|consensus
Probab=99.25 E-value=2e-11 Score=115.61 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=71.6
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID- 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~- 110 (222)
+....+-||||.||.++.+++|.-||++-|+|-.++||+|+.+|.+| ||+||.|.+|++|+.||..||+++|.
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nR------GYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNR------GYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCc------ceEEEEeecHHHHHHHHHHhhCccccC
Confidence 34556679999999999999999999999999999999999999999 99999999999999999999999996
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
||.+.
T Consensus 153 GK~ig 157 (506)
T KOG0117|consen 153 GKLLG 157 (506)
T ss_pred CCEeE
Confidence 66654
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=1.9e-11 Score=116.51 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=60.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
...|||+|||+.+++++|+++|++||+|.+|.|+++..+ ++|||+|.+.++|.+|++.|||+.|.|.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~----------~~afVef~~~~~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV----------FQALVEFESVNSAQHAKAALNGADIYNG 162 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc----------eEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 347999999999999999999999999999999875431 6899999999999999999999999654
No 41
>KOG0147|consensus
Probab=99.24 E-value=5.9e-12 Score=121.16 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=69.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 39 VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
||||||.+.|++++|+.+|.+||.|..|.|+.|..+|++| |||||+|.++++|+.|.+.|||-+|.|+.+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk------gfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK------GFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccccccccc------CcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 8999999999999999999999999999999999999999 9999999999999999999999999999874
No 42
>KOG0121|consensus
Probab=99.22 E-value=2.1e-11 Score=99.67 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=69.1
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.....+.+||||||.+.+++++|.+|||+.|+|.+|-+-.|..+. ..-||.||||.+.++|..|+..|||+.+.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk------tpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK------TPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc------CccceEEEEEecchhHHHHHHHhccCccc
Confidence 355578999999999999999999999999999999887765532 22399999999999999999999999999
Q ss_pred Cccc
Q psy3854 111 CRKR 114 (222)
Q Consensus 111 Grk~ 114 (222)
.+.+
T Consensus 105 dr~i 108 (153)
T KOG0121|consen 105 DRPI 108 (153)
T ss_pred ccce
Confidence 9987
No 43
>KOG0123|consensus
Probab=99.22 E-value=1.1e-11 Score=115.74 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=106.1
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.....++|||.+++.+.++..|..+|+.||.|.++.++++.. |+++ |||||+|.++++|+.|+..|||+.++|
T Consensus 163 ~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~------~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 163 YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSK------GFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCC------CccceeecChhHHHHHHHhccCCcCCc
Confidence 445788999999999999999999999999999999999876 5577 999999999999999999999999997
Q ss_pred cccccccccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHchHHhHHHHHHhccc
Q psy3854 112 RKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREA-------LYFSNNLDVADRIQKKNGKK 181 (222)
Q Consensus 112 rk~~~~~~~lWnikyL~~fkW~~L~e~~a~ek~~R~~rLr~e~~qakke~-------n~ylknld~~~~~~k~~~~~ 181 (222)
..+ | ...++.+.+|...|+..+.+..... ++|++|++.....+.+++.-
T Consensus 236 ~~~--~-------------------V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f 291 (369)
T KOG0123|consen 236 KEL--Y-------------------VGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIF 291 (369)
T ss_pred cce--e-------------------ecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHH
Confidence 763 3 3477888899999998776665444 99999999999999988743
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.21 E-value=3.3e-11 Score=118.24 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=62.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC--cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF--GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f--G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
...+|||+|||+.+++++|+++|++| |+|.+|.++. +||||+|.+.++|..|++.|||+.|+|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------------DYAFVHFEDREDAVKAMDELNGKELEGS 297 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------------CeEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 45689999999999999999999999 9999997752 7999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 298 ~I~ 300 (578)
T TIGR01648 298 EIE 300 (578)
T ss_pred EEE
Confidence 873
No 45
>KOG0124|consensus
Probab=99.21 E-value=1e-11 Score=115.75 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
-+.||||.|.+.+.++.||..|.+||+|.+|.+.-|..|++.| ||+||||+=++.|..|.+.|||..+|||.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHK------gFAFVEYEvPEaAqLAlEqMNg~mlGGRNiK 186 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK------GFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 186 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccccccc------ceEEEEEeCcHHHHHHHHHhccccccCcccc
Confidence 5789999999999999999999999999999999999999988 9999999999999999999999999999874
No 46
>KOG0114|consensus
Probab=99.21 E-value=4.3e-11 Score=94.82 Aligned_cols=73 Identities=12% Similarity=0.294 Sum_probs=66.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||.|||+.+|.+++.+||++||.|..|+|-.+..|. |-+||.|+|-.+|+.|++.|+|..+.++-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr---------GTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR---------GTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC---------ceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 356789999999999999999999999999999998776652 89999999999999999999999999997
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 87 l~ 88 (124)
T KOG0114|consen 87 LV 88 (124)
T ss_pred EE
Confidence 64
No 47
>KOG0145|consensus
Probab=99.20 E-value=2.4e-11 Score=109.27 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=71.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
-...++|.|..||-.||.++||.||+.-|+|.+|+|++|+.+|.|- |||||.|.+++||.+|+..|||-.+-.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSL------GYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSL------GYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccccc------ccceeeecChHHHHHHHhhhcceeeccc
Confidence 3456889999999999999999999999999999999999999887 9999999999999999999999999888
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 112 TIK 114 (360)
T KOG0145|consen 112 TIK 114 (360)
T ss_pred eEE
Confidence 773
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=5.8e-11 Score=81.15 Aligned_cols=52 Identities=29% Similarity=0.472 Sum_probs=46.9
Q ss_pred HHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 53 LTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 53 Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
|+++|++||+|.+|.+.++. + +++||+|.+.++|..|+..|||..++|+++.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~------~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----R------GFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----T------TEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----C------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 68999999999999998765 2 8999999999999999999999999999874
No 49
>KOG0131|consensus
Probab=99.18 E-value=2.5e-11 Score=103.92 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=71.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||||||+.++++-|.+||-+-|+|.+|++..|..+...+ |||||||.+.++|..|+..||+..+.||
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~q------GygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQ------GYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhccccc------ceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 4466789999999999999999999999999999999998877666 9999999999999999999999999999
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
++
T Consensus 80 pI 81 (203)
T KOG0131|consen 80 PI 81 (203)
T ss_pred ee
Confidence 97
No 50
>KOG0111|consensus
Probab=99.15 E-value=1.6e-11 Score=108.26 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+||||.|...+++.-|...|-+||.|..|.+..|-.+++.| |||||||.-.++|..|+..||+.++.||.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHR------gFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHR------GFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhccccc------ceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 45689999999999999999999999999999999998888777 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 83 r 83 (298)
T KOG0111|consen 83 R 83 (298)
T ss_pred E
Confidence 4
No 51
>KOG0130|consensus
Probab=99.12 E-value=8e-11 Score=97.18 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=72.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
+....=+|||.++.+..++++|...|+.||+|..|+|-.|..||-.| ||+.|||+..+.|..|+..|||..+-|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~K------GYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVK------GYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccccc------ceeeeehHhHHHHHHHHHhccchhhhC
Confidence 33445579999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
.+++
T Consensus 142 q~v~ 145 (170)
T KOG0130|consen 142 QNVS 145 (170)
T ss_pred Ccee
Confidence 9875
No 52
>KOG0146|consensus
Probab=99.05 E-value=2.5e-10 Score=103.05 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++|||=+||-.+.+.+|-++|-+||.|.+.++..|+.|..|| .||||.|.++..|..||..|||..||-++
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSK------CFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSK------CFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccc------ceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 356789999999999999999999999999999999999999999 99999999999999999999999999988
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 357 L 357 (371)
T KOG0146|consen 357 L 357 (371)
T ss_pred h
Confidence 6
No 53
>KOG0145|consensus
Probab=99.04 E-value=5.1e-10 Score=100.77 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.|||=||.|+.++.-|-+||++||.|+.|++++|..+.+=| |||||.+.+-++|..|+..|||+.+++|.+.
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCK------GfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCK------GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCccccc------ceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 58999999999999999999999999999999999888777 9999999999999999999999999999874
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.99 E-value=8.1e-10 Score=104.29 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=56.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC------------cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF------------GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAA 102 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f------------G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~ 102 (222)
....|||||||+.+++++|+++|++| +.|..|.+. +.+ |||||+|.+.++|..|+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~k------g~afVeF~~~e~A~~Al- 240 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEK------NFAFLEFRTVEEATFAM- 240 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCC------CEEEEEeCCHHHHhhhh-
Confidence 45679999999999999999999986 344444442 334 89999999999999999
Q ss_pred HhcCCccCCcccc
Q psy3854 103 QYNNTQIDCRKRS 115 (222)
Q Consensus 103 ~LNg~~i~Grk~~ 115 (222)
.|||..|.|+.+.
T Consensus 241 ~l~g~~~~g~~l~ 253 (509)
T TIGR01642 241 ALDSIIYSNVFLK 253 (509)
T ss_pred cCCCeEeeCceeE
Confidence 5999999998874
No 55
>KOG0144|consensus
Probab=98.95 E-value=5.2e-10 Score=105.86 Aligned_cols=72 Identities=15% Similarity=0.338 Sum_probs=65.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC-ccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT-QIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~-~i~Grk 113 (222)
..-.||||-|+...++.++++||++||.|..|+|++|.. +.|| |+|||.|..++.|-.|++.|||+ .|.|-.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sR------GcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSR------GCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-cccc------ceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 355689999999999999999999999999999999987 7788 99999999999999999999994 466644
No 56
>KOG0144|consensus
Probab=98.93 E-value=1.7e-09 Score=102.44 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC-CccCCcc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN-TQIDCRK 113 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg-~~i~Grk 113 (222)
-.+|||-||..|+|.+||++|++||.|..|.|.+|+.++.|+ |+.||.|.+.++|..|+..|++ ..+.|-.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~------gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSK------GCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCccc------ceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 348999999999999999999999999999999999999999 9999999999999999999988 4455543
No 57
>KOG0131|consensus
Probab=98.93 E-value=1.2e-09 Score=93.60 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeE-EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR-VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r-v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
-....++|||||.|.+++..|..+||.||.|.+ =.+++++.||.++ |||||.|.+-+.+.+|+..|||+.+..
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~------~~g~i~~~sfeasd~ai~s~ngq~l~n 166 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPK------GFGFINYASFEASDAAIGSMNGQYLCN 166 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCC------CCeEEechhHHHHHHHHHHhccchhcC
Confidence 334578999999999999999999999999876 3678999999988 999999999999999999999999999
Q ss_pred cccccc
Q psy3854 112 RKRSKH 117 (222)
Q Consensus 112 rk~~~~ 117 (222)
++++..
T Consensus 167 r~itv~ 172 (203)
T KOG0131|consen 167 RPITVS 172 (203)
T ss_pred CceEEE
Confidence 998643
No 58
>KOG0127|consensus
Probab=98.90 E-value=3.8e-09 Score=102.41 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=65.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.-.|.|.|||+.+.+.+|..+||+||.|..|.|.+... |+-. |||||.|.++.+|..|++.|||..|+||++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklc------GFaFV~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLC------GFAFVQFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCcc------ceEEEEEeeHHHHHHHHHhccCceecCcee
Confidence 56799999999999999999999999999999975444 4433 999999999999999999999999999997
No 59
>KOG0127|consensus
Probab=98.89 E-value=2.6e-09 Score=103.53 Aligned_cols=73 Identities=18% Similarity=0.351 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.+|||++||+..+.++|.++||.+|+|..++++.+..++.+| |||||.|.=-+++++|+..++++.++|+.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~R------GfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~ 78 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKR------GFGFVTFAMEEDVQRALAETEQSKFEGRILN 78 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccccc------CccceeeehHhHHHHHHHHhhcCcccceecc
Confidence 789999999999999999999999999999999998888887 9999999999999999999999999998873
No 60
>KOG0124|consensus
Probab=98.88 E-value=2.7e-09 Score=99.71 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=70.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+.+.|++.+++|+..|+.||+|..|.|.++..++..| ||||+||.+...-..|+..||-..+||.-
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk------GyGfiEy~n~qs~~eAiasMNlFDLGGQy 281 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK------GYGFIEYNNLQSQSEAIASMNLFDLGGQY 281 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc------ceeeEEeccccchHHHhhhcchhhcccce
Confidence 367889999999999999999999999999999999998766666 99999999999999999999999999976
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
++
T Consensus 282 LR 283 (544)
T KOG0124|consen 282 LR 283 (544)
T ss_pred Ee
Confidence 63
No 61
>KOG0117|consensus
Probab=98.88 E-value=2.7e-09 Score=101.34 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.+-.+|||.|||..+|++.|+.+|++||.|.||...+ -||||-|.+.++|-+|++.|||+.|.|..
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------------DYaFVHf~eR~davkAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------------DYAFVHFAEREDAVKAMKETNGKELDGSP 322 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------------ceeEEeecchHHHHHHHHHhcCceecCce
Confidence 3556899999999999999999999999999998764 59999999999999999999999999988
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 323 i 323 (506)
T KOG0117|consen 323 I 323 (506)
T ss_pred E
Confidence 6
No 62
>KOG0106|consensus
Probab=98.82 E-value=2.2e-09 Score=94.05 Aligned_cols=62 Identities=13% Similarity=0.358 Sum_probs=58.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.||||+||+...+.+|.++|..||.|..|-+.. |||||+|.|..+|..|+-.|||.+|+|-+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------------gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------------GFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------------ccceeccCchhhhhcccchhcCceeccee
Confidence 589999999999999999999999999998754 89999999999999999999999999876
No 63
>KOG0415|consensus
Probab=98.81 E-value=5.1e-09 Score=97.50 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=72.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
+....+|||..|.|-+++++|.-|||.||+|.+|.+++|..||-|= .|+||||+++++.+.|.-.|++..|..+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsL------qyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSL------QYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchh------heeeeeecchhhHHHHHhhhcceeeccc
Confidence 3456789999999999999999999999999999999999999776 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 310 RIH 312 (479)
T KOG0415|consen 310 RIH 312 (479)
T ss_pred eEE
Confidence 883
No 64
>KOG0109|consensus
Probab=98.78 E-value=4.8e-09 Score=95.46 Aligned_cols=64 Identities=11% Similarity=0.275 Sum_probs=60.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
-.+||||||...++.+||.||.+||+|..|.|+. .||||-.+++..|..|+.+|||..|.|..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------------NYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------------ccceEEeecccccHHHHhhcccceecceEE
Confidence 3589999999999999999999999999999986 599999999999999999999999999776
No 65
>KOG4661|consensus
Probab=98.75 E-value=2.4e-08 Score=97.60 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=71.7
Q ss_pred CCCCCcccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 24 PKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 24 ~k~~~~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
|..+....+.....++||+.|...+...+|+.|||+||+|+-..|+.+..+...+ +||||.+.+..+|-+||+.
T Consensus 393 ~~~k~ekgrs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaR------CYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 393 TGAKSEKGRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGAR------CYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred ccccccccccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcc------eeEEEEecchHHHHHHHHH
Confidence 3333334455566789999999999999999999999999999999887655445 9999999999999999999
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|+-+.+-|+-++
T Consensus 467 LHrTELHGrmIS 478 (940)
T KOG4661|consen 467 LHRTELHGRMIS 478 (940)
T ss_pred hhhhhhcceeee
Confidence 998888777664
No 66
>KOG0151|consensus
Probab=98.71 E-value=2.9e-08 Score=98.66 Aligned_cols=79 Identities=14% Similarity=0.293 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..++++|||||+|.|++..|-..|+.||+|-+|++|--...-.++ +-...|||-|.+..+|.+|...|||..|.+..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~---r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKR---RERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhc---cccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 468899999999999999999999999999999998543211121 11278999999999999999999999999888
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 249 ~K 250 (877)
T KOG0151|consen 249 MK 250 (877)
T ss_pred ee
Confidence 64
No 67
>KOG0110|consensus
Probab=98.68 E-value=4.9e-08 Score=96.75 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=66.5
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.....+.|||.||+++.+.++|..+|.++|.|.+|.|..-++ +.. +..+-|||||+|.++++|..|+..|||+.|.|
T Consensus 511 ~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd-~~~--k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 511 DEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD-PAN--KYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred ccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc-ccc--cccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 334555599999999999999999999999999998865332 111 23344999999999999999999999999999
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
..+
T Consensus 588 H~l 590 (725)
T KOG0110|consen 588 HKL 590 (725)
T ss_pred ceE
Confidence 886
No 68
>KOG0533|consensus
Probab=98.67 E-value=5.4e-08 Score=86.69 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=67.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.++.|||+|||+.+.+++|++||..||.+.++-|..+.. |+|. |.|=|.|....+|.+|+..+||..+.|+.+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~------Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSL------GTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCC------ccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 457799999999999999999999999999999998876 7766 999999999999999999999999999985
No 69
>KOG4206|consensus
Probab=98.67 E-value=5.7e-08 Score=85.26 Aligned_cols=72 Identities=13% Similarity=0.308 Sum_probs=64.2
Q ss_pred ccEEEEcCCCCCCCHHHHHH----HhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTE----FMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~----lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.++|||.||+..+.-++|+. |||+||+|..|.... +.+.| |-+||.|.+...|-.|...|||.++.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmR------GQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMR------GQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCcc------CceEEEecChhHHHHHHHHhcCCcccC
Confidence 34999999999999999999 999999999997643 34555 999999999999999999999999999
Q ss_pred ccccc
Q psy3854 112 RKRSK 116 (222)
Q Consensus 112 rk~~~ 116 (222)
+..+.
T Consensus 80 K~mri 84 (221)
T KOG4206|consen 80 KPMRI 84 (221)
T ss_pred chhhe
Confidence 99753
No 70
>KOG0110|consensus
Probab=98.62 E-value=3.3e-08 Score=97.95 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.+.|.|.|||+..+-.+++.||+.||.|.+|.|......+. ++|||||+|.++++|..|...|.++-+.||.+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a------~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGA------HRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchh------hccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 67899999999999999999999999999999966533333 349999999999999999999999999999974
No 71
>KOG4205|consensus
Probab=98.58 E-value=4.8e-08 Score=89.73 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=58.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
..+.||||.|++.++++.|++.|++||+|..|.+|+|..+++++ |||||+|.+......|+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsr------gFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSR------GFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcc------cccceecCCCcchheeecc
Confidence 67889999999999999999999999999999999999999988 9999999988877766654
No 72
>KOG4660|consensus
Probab=98.55 E-value=6.4e-08 Score=93.80 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=68.1
Q ss_pred CcccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 28 TENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 28 ~~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
.|..+-...|.|+|-|||+.++.++|+++|+.||+|..|...+..+ |.-||+|.|-++|++|+..||+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-----------~~~~v~FyDvR~A~~Alk~l~~~ 135 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-----------GIVFVEFYDVRDAERALKALNRR 135 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-----------ceEEEEEeehHhHHHHHHHHHHH
Confidence 3555677899999999999999999999999999999976655433 88999999999999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
.|.|+.+.
T Consensus 136 ~~~~~~~k 143 (549)
T KOG4660|consen 136 EIAGKRIK 143 (549)
T ss_pred Hhhhhhhc
Confidence 99998874
No 73
>KOG4209|consensus
Probab=98.51 E-value=1.4e-07 Score=83.34 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=73.2
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.+......|||||+.+..+.+++...|+-+|.|.+|.+.+|..+|.+| ||+||+|.+.+.+..++. |||..|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k------~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPK------GFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcc------eeEEEecccHhhhHHHhh-cCCcccc
Confidence 466678889999999999999999999999999999999999988888 999999999999999999 9999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 169 ~~~i~ 173 (231)
T KOG4209|consen 169 GPAIE 173 (231)
T ss_pred cccce
Confidence 98873
No 74
>KOG0116|consensus
Probab=98.47 E-value=2.2e-07 Score=88.50 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=59.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.|||.|||++.+++.|.+.|..||.|....|+.-...++.. .||||+|++...++.|+..= =..|+|+++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~------~fgFV~f~~~~~~~~~i~As-p~~ig~~kl 359 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNP------CFGFVEFENAAAVQNAIEAS-PLEIGGRKL 359 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcC------ceEEEEEeecchhhhhhhcC-ccccCCeeE
Confidence 3449999999999999999999999999999887654333333 89999999999999999764 556777776
No 75
>KOG0226|consensus
Probab=98.46 E-value=4.3e-07 Score=81.50 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCCCCCccccCCCC--------CCcc--cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCC
Q psy3854 4 DAGSSNESSPAEEPGKYVLKPKD--------NTEN--SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKR 73 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~k~--------~~~~--~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~ 73 (222)
++++.+.....+..++++-+|.- .+|. .=...--.||-|-|.-.++++.|-..|.+|=.-....+++|..
T Consensus 148 k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR 227 (290)
T KOG0226|consen 148 KASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR 227 (290)
T ss_pred chhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccc
Confidence 34555555666666666655521 1111 1223456789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 74 KPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 74 tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
||+|+ |||||.|.|..++.+|..+|||.-+|.+.+
T Consensus 228 TgKSk------gygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 228 TGKSK------GYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccccc------cceeeeecCHHHHHHHHHhhcccccccchh
Confidence 99999 999999999999999999999999999986
No 76
>KOG0109|consensus
Probab=98.43 E-value=2.1e-07 Score=84.87 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=63.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
..-++.|+||||.|..+..+||..|.+||+|..+.|+. +||||-|.-.++|-.|+..|||+.+.|+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------------dy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------------DYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------------ceeEEEEeeccchHHHHhcccccccccc
Confidence 33577899999999999999999999999999999976 6999999999999999999999999999
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
++
T Consensus 141 ~m 142 (346)
T KOG0109|consen 141 RM 142 (346)
T ss_pred ee
Confidence 86
No 77
>KOG0132|consensus
Probab=98.43 E-value=3.4e-07 Score=91.79 Aligned_cols=92 Identities=16% Similarity=0.478 Sum_probs=75.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
-+.-.++||||.||..|++.+|..+|+.||+|.+|.|.... |.|||.+....+|.+|+..|++..+.+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------------~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------------GCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------------ceeEEEEeehhHHHHHHHHHhcccccc
Confidence 34467889999999999999999999999999999997642 899999999999999999999999998
Q ss_pred ccccc----------cccccccc----ccCCCcccchhhHH
Q psy3854 112 RKRSK----------HYDFIWNF----KYLPRFKWIHLNER 138 (222)
Q Consensus 112 rk~~~----------~~~~lWni----kyL~~fkW~~L~e~ 138 (222)
+.+.. -+.|.|.+ .|+ -|+.|+..
T Consensus 485 k~Iki~Wa~g~G~kse~k~~wD~~lGVt~I---P~~kLt~d 522 (894)
T KOG0132|consen 485 KTIKIAWAVGKGPKSEYKDYWDVELGVTYI---PWEKLTDD 522 (894)
T ss_pred eeeEEeeeccCCcchhhhhhhhcccCeeEe---ehHhcCHH
Confidence 88731 22456665 444 47777655
No 78
>KOG4212|consensus
Probab=98.43 E-value=4.6e-07 Score=86.55 Aligned_cols=70 Identities=16% Similarity=0.310 Sum_probs=65.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 39 IYLSKVPPHMNVTQLTEFMSR-FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 39 VYIsnLP~~m~e~~Lr~lFs~-fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
|||.|||++..-.+|+.||-. -|+|+-|.|..|.. |++| |.|-|||.+++.+++|++.||-..+.||.+.
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~r------GcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKAR------GCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcC------CceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 999999999999999999965 89999999988765 8888 9999999999999999999999999999973
No 79
>KOG0153|consensus
Probab=98.39 E-value=4.3e-07 Score=84.29 Aligned_cols=69 Identities=14% Similarity=0.362 Sum_probs=61.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh-cCCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY-NNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L-Ng~~i~Grk 113 (222)
.-..||||+|-+.+++.+|+..|.+||+|.+|.+.+.. +.+||+|.++..|+.|++.+ |...|.|.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 45679999999999999999999999999999998743 68999999999999888766 668889988
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 295 l~ 296 (377)
T KOG0153|consen 295 LK 296 (377)
T ss_pred EE
Confidence 73
No 80
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=2.9e-06 Score=66.02 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=65.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhc--CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSR--FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~--fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
+++|-|.|||..++..+|.+++.. .|...-+||..|..++-+. |||||.|.++..|..-...+||+....-.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~------GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNL------GYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCce------EEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 478999999999999999999987 5788889999987766655 99999999999999999999999887554
Q ss_pred ccccc
Q psy3854 114 RSKHY 118 (222)
Q Consensus 114 ~~~~~ 118 (222)
..+..
T Consensus 75 s~Kvc 79 (97)
T PF04059_consen 75 SKKVC 79 (97)
T ss_pred CCcEE
Confidence 43333
No 81
>KOG0146|consensus
Probab=98.31 E-value=1.3e-06 Score=79.33 Aligned_cols=74 Identities=8% Similarity=0.201 Sum_probs=65.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC-CccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN-TQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg-~~i~Grk 113 (222)
....||||-|...-.++++|.+|+.||.|..|.+.+..+ |-|| |.+||.|.+.-+|..||..|+| ..|.|-.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sK------GCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSK------GCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCC------CceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 445699999999999999999999999999999988766 7788 9999999999999999999999 4566665
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
.|
T Consensus 91 SS 92 (371)
T KOG0146|consen 91 SS 92 (371)
T ss_pred cc
Confidence 44
No 82
>KOG4212|consensus
Probab=98.30 E-value=1e-06 Score=84.18 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=65.2
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...+.+.|+|.|||.++|-..||.-|-.||.|..+.||.. |+++ |-|.|.++++|++|+..|||..+.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---Gksk--------GVVrF~s~edAEra~a~Mngs~l~G 600 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSK--------GVVRFFSPEDAERACALMNGSRLDG 600 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCcc--------ceEEecCHHHHHHHHHHhccCcccC
Confidence 3446677999999999999999999999999999988543 6766 6999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
|.++
T Consensus 601 r~I~ 604 (608)
T KOG4212|consen 601 RNIK 604 (608)
T ss_pred ceee
Confidence 9875
No 83
>KOG1548|consensus
Probab=98.28 E-value=2.2e-06 Score=79.65 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCccee--------EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVG--------RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~--------rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
...+.|||++||.++|.+++.++|+++|-|- +|.|-++.. |+-| |.|-|.|...+....|+..||
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lK------GDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLK------GDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCcc------CceEEEeecccHHHHHHHHhC
Confidence 3456799999999999999999999999874 356666655 6666 999999999999999999999
Q ss_pred CCccCCcccc
Q psy3854 106 NTQIDCRKRS 115 (222)
Q Consensus 106 g~~i~Grk~~ 115 (222)
+.++.|++++
T Consensus 205 e~~~rg~~~r 214 (382)
T KOG1548|consen 205 EDELRGKKLR 214 (382)
T ss_pred cccccCcEEE
Confidence 9999999985
No 84
>KOG4205|consensus
Probab=98.24 E-value=1.2e-06 Score=80.58 Aligned_cols=70 Identities=19% Similarity=0.481 Sum_probs=61.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHH----HhcCCccCC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAA----QYNNTQIDC 111 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~----~LNg~~i~G 111 (222)
.-.||||.||+++++.++++.|.+||.|..+-++.|..+.+++ |||||.|.+.+..++++. .|||+.+.-
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r------gFgfv~~~~e~sVdkv~~~~f~~~~gk~vev 170 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPR------GFGFVTFDSEDSVDKVTLQKFHDFNGKKVEV 170 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccc------cceeeEeccccccceecccceeeecCceeeE
Confidence 3479999999999999999999999999999999999988888 999999999998888774 355555443
No 85
>KOG0120|consensus
Probab=98.12 E-value=1.8e-06 Score=83.78 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=72.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.-..+..+|||+||..+++..++++...||.+....|..+..+|-++ ||+|.||-|..++..|++.|||..+|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk------g~af~ey~dpsvtd~A~agLnGm~lgd 358 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK------GFAFCEYCDPSVTDQAIAGLNGMQLGD 358 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc------ceeeeeeeCCcchhhhhcccchhhhcC
Confidence 44556678999999999999999999999999999999999988888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 359 ~~lv 362 (500)
T KOG0120|consen 359 KKLV 362 (500)
T ss_pred ceeE
Confidence 9974
No 86
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.88 E-value=3.4e-05 Score=60.42 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
.+|+|.+++..++-++|+++|++||.|.-|.+.+.. ..|||-|.+.+.|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------------CEEEEEECCcchHHHHHHHHHhc
Confidence 478999999999999999999999999999887643 58999999999999999998766
No 87
>KOG4210|consensus
Probab=97.88 E-value=1.5e-05 Score=72.53 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=75.4
Q ss_pred cccCCCCCCcccccCCccEEE-EcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHH
Q psy3854 20 YVLKPKDNTENSKKYKKGIIY-LSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98 (222)
Q Consensus 20 ~~~k~k~~~~~~k~~~~g~VY-IsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak 98 (222)
..+.|+............++| ++++|..++.++|+..|..+|.|.+|++..+..+|..+ |+|||+|.+...+.
T Consensus 168 ~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~k------g~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 168 RGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSK------GFAYVDFSAGNSKK 241 (285)
T ss_pred ccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchh------hhhhhhhhhchhHH
Confidence 334455554444555667777 99999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHhcCCccCCcccc
Q psy3854 99 QVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 99 ~A~~~LNg~~i~Grk~~ 115 (222)
.++.. .+..++|+.+.
T Consensus 242 ~~~~~-~~~~~~~~~~~ 257 (285)
T KOG4210|consen 242 LALND-QTRSIGGRPLR 257 (285)
T ss_pred HHhhc-ccCcccCcccc
Confidence 99988 88888888653
No 88
>KOG4454|consensus
Probab=97.63 E-value=3.2e-05 Score=68.58 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=63.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.-+|||+|+-..++++-|-+||-+-|+|.+|.|..+.+ ++.| |+||+|.+.-....|++.|||..+.++.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-------Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-------FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-------eeeeecccccchhhhhhhcccchhccchhh
Confidence 45799999999999999999999999999999855544 4443 999999999999999999999999888763
No 89
>KOG2314|consensus
Probab=97.58 E-value=0.00012 Score=71.86 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=59.8
Q ss_pred ccCCccEEEEcCCCCCCCHH-------HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 32 KKYKKGIIYLSKVPPHMNVT-------QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~-------~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
+..--.+|.|-++|- +.++ -|..+||++|+|+.+++.++..+| .+ |+-|+||.+.++|+.|+..|
T Consensus 54 ~eg~D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tk------G~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TK------GYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred cCCcceEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCC-ee------eEEEEEecChhhHHHHHHhc
Confidence 344567899999984 3333 346789999999999998887754 66 99999999999999999999
Q ss_pred cCCccCCc
Q psy3854 105 NNTQIDCR 112 (222)
Q Consensus 105 Ng~~i~Gr 112 (222)
||..+.-.
T Consensus 126 ~G~~ldkn 133 (698)
T KOG2314|consen 126 NGKRLDKN 133 (698)
T ss_pred ccceeccc
Confidence 99988754
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.50 E-value=0.00019 Score=67.22 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=61.6
Q ss_pred ccCCccEEEEcCCCCCCCHHH------HHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEE-EEEecchHHHHHHHHHh
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQ------LTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEG-WIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~------Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~G-fVEF~dk~~Ak~A~~~L 104 (222)
+-.+..-|||-.|||.+-.+. =.+.|++||.|..|.+-+...+..+- .. .+| ||.|..+++|.+||...
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst--~~--h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNST--AS--HAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccc--cc--cceEEEEecchHHHHHHHHHh
Confidence 344566689999999988776 35799999999999885543222111 11 233 89999999999999999
Q ss_pred cCCccCCcccc
Q psy3854 105 NNTQIDCRKRS 115 (222)
Q Consensus 105 Ng~~i~Grk~~ 115 (222)
+|+.+.||-+.
T Consensus 186 Dgs~~DGr~lk 196 (480)
T COG5175 186 DGSLLDGRVLK 196 (480)
T ss_pred ccccccCceEe
Confidence 99999999885
No 91
>KOG1457|consensus
Probab=97.47 E-value=0.00037 Score=62.17 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=56.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.-.+|||+.||-++.+.+|..||-.|-=-....|......++ ..--+|||.|.+..+|..|...|||..++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~-----~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQ-----VCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCc-----cccceEEEEecchHHHHHHHHHhcCeeec
Confidence 356799999999999999999999986566666654332111 11168999999999999999999998875
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.29 E-value=0.00085 Score=51.54 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 37 GIIYLSKVPPHMNVTQ----LTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~----Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
+.|||+|||.+.++.. |++|+..+| +|.+|. | +-|.|-|.+.+.|.+|..-|+|-.+-|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---------~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---------GTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---------T-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---------CEEEEEeCCHHHHHHHHHhhccccccc
Confidence 5699999999999885 566676776 777762 2 679999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
.+++
T Consensus 67 ~kI~ 70 (90)
T PF11608_consen 67 NKIS 70 (90)
T ss_dssp S--E
T ss_pred ceEE
Confidence 9985
No 93
>KOG1190|consensus
Probab=97.20 E-value=0.00084 Score=64.06 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=61.6
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..+|.|+||.+ .+|++.|-.+|+-||.|.||.|..++. .-+-|-|.|.-.|..|.+.|+|..+.|+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~l 365 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----------DNALIQMSDGQQAQLAMEHLEGHKLYGKKL 365 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----------cceeeeecchhHHHHHHHHhhcceecCceE
Confidence 46788888865 679999999999999999999988653 469999999999999999999999999988
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
+
T Consensus 366 r 366 (492)
T KOG1190|consen 366 R 366 (492)
T ss_pred E
Confidence 4
No 94
>KOG0106|consensus
Probab=97.16 E-value=0.00021 Score=62.94 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=58.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...++.|-+++-.+...+|...|++||+++.+.++ . ++|||+|...++|+.|++.|+|..+.|+.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~------~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------R------NFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------c------cccceeehhhhhhhhcchhccchhhcCcee
Confidence 34568899999999999999999999999554441 1 799999999999999999999999999987
Q ss_pred cc
Q psy3854 115 SK 116 (222)
Q Consensus 115 ~~ 116 (222)
..
T Consensus 164 ~~ 165 (216)
T KOG0106|consen 164 SV 165 (216)
T ss_pred ee
Confidence 53
No 95
>KOG0147|consensus
Probab=97.13 E-value=0.0002 Score=69.94 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=66.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..-+||+--|+-..+|.+|.++|+.+|+|..|.++.|..++++| |-|||||.|...--.|| .|+|+.+.|-++
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rsk------gi~Yvef~D~~sVp~ai-aLsGqrllg~pv 250 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSK------GIAYVEFCDEQSVPLAI-ALSGQRLLGVPV 250 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhc------ceeEEEEecccchhhHh-hhcCCcccCcee
Confidence 44567888888999999999999999999999999999999998 99999999998888888 899999999986
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.09 E-value=0.0012 Score=45.69 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHH
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVA 101 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~ 101 (222)
.-|=|+..|+++.+.-| ..|+.||+|..+++.... ...||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~------------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPEST------------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCC------------cEEEEEECCHHHHHhhC
Confidence 45778889988875544 588889999999986221 57999999999999984
No 97
>KOG1457|consensus
Probab=97.02 E-value=0.00084 Score=59.96 Aligned_cols=69 Identities=12% Similarity=0.294 Sum_probs=57.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..++||.||.+.++++.|+.+|+.|--..+++|-. + |.+ .-+||+|++-+.|..|+..|.|..|....+
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~--~g~-------~vaf~~~~~~~~at~am~~lqg~~~s~~dr 278 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R--GGM-------PVAFADFEEIEQATDAMNHLQGNLLSSSDR 278 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C--CCc-------ceEeecHHHHHHHHHHHHHhhcceeccccC
Confidence 34689999999999999999999998777777732 2 212 589999999999999999999988865443
No 98
>KOG0115|consensus
Probab=96.96 E-value=0.00083 Score=60.63 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=56.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
..|||-||++.+.-+.|.+-|+.||+|.+..+..|+. ++.- +.|.|+|..+-.|..|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t------~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPT------REGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-cccc------ccchhhhhcchhHHHHHHHhcc
Confidence 7899999999999999999999999999988887765 4433 8999999999999999999964
No 99
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.95 E-value=0.0043 Score=47.52 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=43.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
....+.||+ .|..+.-.+|.+||++||.|. |--+.| +-+||...+++.|+.|...++-
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------------CcEEEEeecHHHHHHHHHHhcc
Confidence 355677777 999999999999999999874 333333 5799999999999999998863
No 100
>KOG1995|consensus
Probab=96.89 E-value=0.0014 Score=61.23 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=67.6
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeE--------EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR--------VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r--------v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
.......|||..||..++...|-..|.+.|.|.+ |.|-.|..|++.| +.|-|.|+|...|+.|+..
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~K------GeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPK------GEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcC------CceeeeecChhhhhhhhhh
Confidence 3566778999999999999999999999999853 5566677778777 9999999999999999999
Q ss_pred hcCCccCCccc
Q psy3854 104 YNNTQIDCRKR 114 (222)
Q Consensus 104 LNg~~i~Grk~ 114 (222)
+++..+.|..+
T Consensus 136 ~agkdf~gn~i 146 (351)
T KOG1995|consen 136 FAGKDFCGNTI 146 (351)
T ss_pred hccccccCCCc
Confidence 99999999664
No 101
>KOG1548|consensus
Probab=96.84 E-value=0.0021 Score=60.12 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=58.5
Q ss_pred ccccCCccEEEEcCCCC----CCCH-------HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHH
Q psy3854 30 NSKKYKKGIIYLSKVPP----HMNV-------TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98 (222)
Q Consensus 30 ~~k~~~~g~VYIsnLP~----~m~e-------~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak 98 (222)
+.+.....+|-|+|+-. .-++ ++|++-.++||.|.+|.|--..+. |..-|.|.+.++|.
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd----------GvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD----------GVVTVSFRNNEEAD 328 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC----------ceeEEEeCChHHHH
Confidence 34555677788888643 2232 355666999999999988533222 88999999999999
Q ss_pred HHHHHhcCCccCCcccc
Q psy3854 99 QVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 99 ~A~~~LNg~~i~Grk~~ 115 (222)
.||..|+|+-++||.+.
T Consensus 329 ~ciq~m~GR~fdgRql~ 345 (382)
T KOG1548|consen 329 QCIQTMDGRWFDGRQLT 345 (382)
T ss_pred HHHHHhcCeeecceEEE
Confidence 99999999999999974
No 102
>KOG1456|consensus
Probab=96.64 E-value=0.0055 Score=58.20 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=63.5
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++.|..|.. .|+-+.|-.||-.||.|.+|.+|+... |-|-||+.|....++|+..|||.++-|.+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----------gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----------GTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----------ceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 456778888876 688999999999999999999998765 78999999999999999999999999999
Q ss_pred ccc
Q psy3854 114 RSK 116 (222)
Q Consensus 114 ~~~ 116 (222)
+..
T Consensus 355 l~v 357 (494)
T KOG1456|consen 355 LNV 357 (494)
T ss_pred EEE
Confidence 854
No 103
>KOG4211|consensus
Probab=96.59 E-value=0.0063 Score=59.11 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=49.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHH
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAA 102 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~ 102 (222)
.-.|-+-.||+..|+.+|+++|+-.+ |.++.+.++ +|+.. |++||||.+.++++.|++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~s------GeA~Ve~~seedv~~Alk 67 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPS------GEAYVEFTSEEDVEKALK 67 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcC------cceEEEeechHHHHHHHH
Confidence 34577889999999999999999998 888776665 36665 999999999999999986
No 104
>KOG4307|consensus
Probab=96.46 E-value=0.0075 Score=61.02 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=66.5
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcce-eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEV-GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I-~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
++.-+.+|-+-|+|++++-++|-++|+-|-.+ .+|.+..+++ |..- |++-|-|++.++|.+|...||+++|+
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~-G~pT------Ge~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD-GVPT------GECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC-CCcc------cceeEeecCHHHHHhhhhccccCccc
Confidence 55566789999999999999999999999876 4777776655 5554 99999999999999999999999999
Q ss_pred Cccc
Q psy3854 111 CRKR 114 (222)
Q Consensus 111 Grk~ 114 (222)
.++.
T Consensus 936 nr~V 939 (944)
T KOG4307|consen 936 NRVV 939 (944)
T ss_pred ceeE
Confidence 9986
No 105
>KOG4206|consensus
Probab=96.26 E-value=0.021 Score=50.59 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=58.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
....++++-|||...+.+.|..+|.+|+--..|++++... +.+||+|.+...|..|...|.|-.|.
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~-----------~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS-----------GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC-----------ceeEEecchhhhhHHHhhhhccceec
Confidence 3455789999999999999999999999999999988543 89999999999999999999987766
No 106
>KOG4211|consensus
Probab=96.20 E-value=0.012 Score=57.19 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeE-EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR-VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r-v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
...++|-|-.||+.+++++|.++|+.-=-|.. |.|..+ ..+++- |++||.|++.+.|+.|+.- |...|+-|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~t------GEAfVqF~sqe~ae~Al~r-hre~iGhR 172 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPT------GEAFVQFESQESAEIALGR-HRENIGHR 172 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcc------cceEEEecCHHHHHHHHHH-HHHhhccc
Confidence 57789999999999999999999999876666 444444 446655 9999999999999999853 44445444
No 107
>KOG1996|consensus
Probab=96.12 E-value=0.01 Score=54.95 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccccccc
Q psy3854 50 VTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHY 118 (222)
Q Consensus 50 e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~ 118 (222)
++++.+-+++||+|++|-|.-....---. -.-=||+|...+.|-+|+-.|||.-||||..+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~de-----avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDE-----AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccch-----hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45788999999999999886443211000 03479999999999999999999999999976543
No 108
>KOG1855|consensus
Probab=95.76 E-value=0.01 Score=57.02 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=56.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEec-----CCCCCCCCCC--CCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMP-----KKRKPGEKKP--AKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~-----d~~tgksKkk--~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
..-+|.+-|||.+-.-+.|..||+.+|.|.+|+|.. ++..+.+++- -..--.++|||...+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 456788999999999999999999999999999953 2333333210 001256999999999999999999753
No 109
>KOG2193|consensus
Probab=95.76 E-value=0.015 Score=56.17 Aligned_cols=64 Identities=8% Similarity=0.272 Sum_probs=50.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcce-eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC-CccCCccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEV-GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN-TQIDCRKR 114 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I-~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg-~~i~Grk~ 114 (222)
.+|||||.|..++++|..+|...--- ..-+|+. + ||+||...|..-|-+|++.||| .++-|++.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~ 68 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------S-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQ 68 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee------c-------ceeeccCCchhhhhhhHHhhchhhhhcCcee
Confidence 58999999999999999999876211 1222221 1 8999999999999999999999 55777765
No 110
>KOG0128|consensus
Probab=95.70 E-value=0.0028 Score=64.80 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=52.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
.+||+|||+.|...+|...|+.||.|..|.+.--...++-| |.|||+|.++++|.+|+....+
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~r------G~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFR------GKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccc------cceeeEeecCCchhhhhhhhhh
Confidence 47999999999999999999999999888776333445555 9999999999999988875543
No 111
>KOG0120|consensus
Probab=95.68 E-value=0.025 Score=55.40 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=47.1
Q ss_pred HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 52 QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 52 ~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+|+.-+++||.|.+|.+.++...+... -.-|-=||||.+.+++++|.+.|+|..++||...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~---~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPV---PGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcC---CCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 456678899999999997762221111 0015579999999999999999999999999974
No 112
>KOG1456|consensus
Probab=95.28 E-value=0.051 Score=51.87 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=63.9
Q ss_pred cccccCCccEEEEcCCCCCCCHHHHHHHhhcCcce-eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 29 ENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEV-GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 29 ~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I-~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
.+.=+..+.+|..-|-|..||++.|-.||...+.- ++|.|.+-+ +-+| .-|-+||+++.+|-.|+..||.+
T Consensus 399 KNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serS-------ssGllEfe~~s~Aveal~~~NH~ 470 (494)
T KOG1456|consen 399 KNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERS-------SSGLLEFENKSDAVEALMKLNHY 470 (494)
T ss_pred cccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-cccc-------ccceeeeehHHHHHHHHHHhccc
Confidence 33344456789999999999999999999998843 677776654 2333 46999999999999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
+|.+...+
T Consensus 471 pi~~p~gs 478 (494)
T KOG1456|consen 471 PIEGPNGS 478 (494)
T ss_pred cccCCCCC
Confidence 99987654
No 113
>KOG0105|consensus
Probab=95.12 E-value=0.063 Score=47.09 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=57.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
..-.|.|+.||+.-.-.+|+..+-+-|.|.-..+.+| |.|-|+|..+++.+.|+..|..+.+..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------------cceeeeeeehhhHHHHHHhhccccccC
Confidence 3456889999999999999999999999998888776 789999999999999999999876644
No 114
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.02 E-value=0.033 Score=47.26 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=50.4
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhc-Ccce---eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSR-FGEV---GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~-fG~I---~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
.....-|-|.+|||.|+++++.+.++. +|.- ..+.-....... +...|.-+||.|.+.+++..-+..+||..
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~----~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSF----KPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSS----TTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccC----CCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 334557999999999999999999998 7766 222211221111 22346889999999999999999999988
Q ss_pred cCCccc
Q psy3854 109 IDCRKR 114 (222)
Q Consensus 109 i~Grk~ 114 (222)
+-..+.
T Consensus 80 F~D~kg 85 (176)
T PF03467_consen 80 FVDSKG 85 (176)
T ss_dssp EE-TTS
T ss_pred EECCCC
Confidence 766554
No 115
>KOG4676|consensus
Probab=94.85 E-value=0.032 Score=53.30 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=58.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..|+|-|.||.|..+-++|+.||+-.|+|-.+.|+|......- ...--.+||-|.|...+. |+..|-++.+-++-+
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~---pv~sRtcyVkf~d~~sv~-vaQhLtntvfvdral 81 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKI---PVISRTCYVKFLDSQSVT-VAQHLTNTVFVDRAL 81 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccC---cceeeeEEEeccCCccee-HHhhhccceeeeeeE
Confidence 5679999999999999999999999999999999985322110 001147999999988776 666777766655544
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.82 E-value=0.086 Score=41.22 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=45.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEE--EEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGW--IEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~Gf--VEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..-|.|=..|+. .-..|-+.|++||.|.+.+=......+-... ...-|-.| |.|.++.+|.+|+. -||+.|+|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~-~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPY-PIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccc-cCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 345777788888 5567788999999999886222111000000 00003345 89999999999994 7999998865
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 83 m 83 (100)
T PF05172_consen 83 M 83 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.82 E-value=0.075 Score=44.40 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=40.7
Q ss_pred HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 52 QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 52 ~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.|-+.|+.||+|.=|++.- +.=||.|.+-+.|-+|+ .|||..|+|+.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~--------------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~ 100 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--------------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLK 100 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--------------TCEEEEESSCHHHHHHH-HGCCSEETTEEEE
T ss_pred HHHHHHHhCCceEEEEEeC--------------CeEEEEECccHHHHHHH-ccCCcEECCEEEE
Confidence 6778889999999888865 34799999999998776 6999999999874
No 118
>KOG0129|consensus
Probab=94.56 E-value=0.11 Score=50.91 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCC--CCCCccEEEEEecchHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKK--PAKQFTEGWIEFLKKKVAKQ 99 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKk--k~~~~g~GfVEF~dk~~Ak~ 99 (222)
-..-||||.||++|+++.|-..|..||.|. |.=.. ..+...+ .+.++||.|.-|++.+....
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~--k~~~~~~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPG--KANSRGRAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCC--CccccccCCCCCcccEEEEEecchHHHHH
Confidence 344599999999999999999999999763 21111 1111111 34456799999999776653
No 119
>KOG1190|consensus
Probab=94.16 E-value=0.17 Score=48.80 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=57.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+.++|||+++++++|+++|...|-.++.+.-. ++.+ -.+.+-+++.++|-.|.-.|++..+|+..
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~------kmal~q~~sveeA~~ali~~hnh~lgen~ 481 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDR------KMALPQLESVEEAIQALIDLHNHYLGENH 481 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCc------ceeecccCChhHhhhhccccccccCCCCc
Confidence 44789999999999999999999999887766533 2222 58999999999999999999999998874
No 120
>KOG0128|consensus
Probab=93.92 E-value=0.028 Score=57.72 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=60.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...|+|++.|+.-|.+.|+.+++.+|.++++.++.... |+.+ |-+||.|.+..+|.+++..+.+..+.-+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpk------g~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPK------GKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccc------cceeccCCCcchhhhhcccchhhhhhhcC
Confidence 44689999999999999999999999999999876655 7777 99999999999999999888776554433
No 121
>KOG0112|consensus
Probab=93.78 E-value=0.14 Score=53.14 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=63.1
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
+-...+.+++|.|+++.....|...|+.||.|..|.+.. |. -|+||-|++...|..|+..|-|.+|||
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--------~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--------PYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--------cceeeecccCccchhhHHHHhcCcCCC
Confidence 555667799999999999999999999999999987743 32 599999999999999999999999998
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
-+..
T Consensus 519 P~~r 522 (975)
T KOG0112|consen 519 PPRR 522 (975)
T ss_pred CCcc
Confidence 6653
No 122
>KOG2202|consensus
Probab=93.73 E-value=0.032 Score=50.42 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHhh-cCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 52 QLTEFMS-RFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 52 ~Lr~lFs-~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+|-.-|+ +||+|..+.+-.+- .-.-+ |--||.|...++|.+|++.|||.-++|+++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~------GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLV------GNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhh------hhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 4444445 99999998664332 11222 7899999999999999999999999999973
No 123
>KOG4849|consensus
Probab=93.15 E-value=0.2 Score=47.62 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=62.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc--ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG--EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG--~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
+.-.+|||||-++.|+++|-+.+..-| .|..+++.-+..-|.|| ||+.|...+-...|..++.|--+.|.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSK------G~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSK------GYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCccc------ceEEEEecchHHHHHHHHhcccceecCC
Confidence 445689999999999999999988877 45566666666668898 9999999999999999999999999887
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
.-
T Consensus 153 ~P 154 (498)
T KOG4849|consen 153 SP 154 (498)
T ss_pred CC
Confidence 63
No 124
>KOG0112|consensus
Probab=92.60 E-value=0.054 Score=56.13 Aligned_cols=74 Identities=9% Similarity=0.173 Sum_probs=61.3
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...-+-+||+|||+..+++.+|+..|+.||.|.+|.|..-.....+ .||||-|.+-..|-.|...|-|..|+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-------a~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-------AYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-------chhhhhhhccccCcccchhhcCCcccc
Confidence 4455678999999999999999999999999999998654221112 589999999999999999999988764
Q ss_pred c
Q psy3854 112 R 112 (222)
Q Consensus 112 r 112 (222)
-
T Consensus 441 g 441 (975)
T KOG0112|consen 441 G 441 (975)
T ss_pred C
Confidence 3
No 125
>KOG0129|consensus
Probab=92.36 E-value=0.45 Score=46.82 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=55.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhh-cCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMS-RFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs-~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
....+-+||||.||.-++-.+|-.||+ -||-|.=|-|=.|.+-+-.| |-|=|.|.+...=-+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk------GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK------GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC------CcceeeecccHHHHHHHhh
Confidence 455677899999999999999999999 79999998887776656666 8899999998877777763
No 126
>KOG4307|consensus
Probab=91.29 E-value=0.81 Score=46.92 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=61.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeE-EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR-VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r-v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
..-.+.|||-.||...+..++-.+|..--.|.. |+|.+-.. ++.+ +.|||+|.....+..|+..-.-.-+|-
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~-~~~~------~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT-DLLR------PAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc-cccc------chhhheeccccccchhhhcccccccCc
Confidence 345788999999999999999999999887776 88877643 5555 899999999999998887766666666
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
+-+
T Consensus 504 r~i 506 (944)
T KOG4307|consen 504 RII 506 (944)
T ss_pred eEE
Confidence 555
No 127
>KOG2891|consensus
Probab=91.20 E-value=0.29 Score=45.43 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=56.4
Q ss_pred cccCCCCCCcccccCCccEEEEcCCCCC------------CCHHHHHHHhhcCcceeEEEEecCCC-----CCCCCC-CC
Q psy3854 20 YVLKPKDNTENSKKYKKGIIYLSKVPPH------------MNVTQLTEFMSRFGEVGRVYLMPKKR-----KPGEKK-PA 81 (222)
Q Consensus 20 ~~~k~k~~~~~~k~~~~g~VYIsnLP~~------------m~e~~Lr~lFs~fG~I~rv~L~~d~~-----tgksKk-k~ 81 (222)
+..++++-++.+.-..|.+||+.+||-. -+++.|+..|..||.|..|.|..-++ +|+--- ..
T Consensus 133 ~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 133 FFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQF 212 (445)
T ss_pred HHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcccccee
Confidence 4455555555556667899999999953 35678999999999999998853322 121100 11
Q ss_pred CCccEE-------EEEecchHHHHHHHHHhcCCccC
Q psy3854 82 KQFTEG-------WIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 82 ~~~g~G-------fVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
..|||| ||.|..-.---.|+..|-|..+.
T Consensus 213 ~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 213 HGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred eccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHH
Confidence 224443 44454444445677777775543
No 128
>KOG1365|consensus
Probab=91.11 E-value=0.22 Score=47.82 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=59.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeE---EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGR---VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r---v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.+.|-+..||+..+.++|-.+|..|-.-.+ |+++.+.. |+.- |++||+|.+.+.|..|+..-+.+.+.+|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPS------GeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPS------GEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcC------hhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 789999999999999999999999985443 67766654 6655 9999999999999999998888777444
Q ss_pred c
Q psy3854 113 K 113 (222)
Q Consensus 113 k 113 (222)
-
T Consensus 353 Y 353 (508)
T KOG1365|consen 353 Y 353 (508)
T ss_pred e
Confidence 3
No 129
>KOG2068|consensus
Probab=90.86 E-value=0.16 Score=47.32 Aligned_cols=78 Identities=13% Similarity=0.286 Sum_probs=59.6
Q ss_pred CccEEEEcCCCCCCCHHHH---HHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQL---TEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~L---r~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...-+||-.||+.+..+.+ .+.|++||.|.+|.+..+..+..+ ...+.-++|.|...++|..|+..-+|..+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~---~~~~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSS---SGGTCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccC---CCCCCcccccccchHhhhhHHHHhhhHHhhh
Confidence 4455799999988876655 357999999999988776521111 1223459999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 153 ~~lk 156 (327)
T KOG2068|consen 153 RALK 156 (327)
T ss_pred hhhH
Confidence 9853
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.02 E-value=0.69 Score=39.80 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc--CCccCCccccccccccccc---
Q psy3854 50 VTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN--NTQIDCRKRSKHYDFIWNF--- 124 (222)
Q Consensus 50 e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN--g~~i~Grk~~~~~~~lWni--- 124 (222)
...|+.+|+.|+.+..+...+ +|+---|.|.+.++|..|...|+ ++.+.|..+..|+.....+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~~~~ 76 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPIEDD 76 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS----
T ss_pred HHHHHHHHHhcCCceEEEEcC------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccccccc
Confidence 468999999999998877665 24568899999999999999999 9999999988777766554
Q ss_pred ---ccCC----------------CcccchhhHH
Q psy3854 125 ---KYLP----------------RFKWIHLNER 138 (222)
Q Consensus 125 ---kyL~----------------~fkW~~L~e~ 138 (222)
.||. ...|....|.
T Consensus 77 ~~~~~L~~P~~~K~FLISPP~SPP~gWe~~~E~ 109 (184)
T PF04847_consen 77 SEKQYLEPPKPEKQFLISPPPSPPVGWEPRCED 109 (184)
T ss_dssp --S--S---------------------------
T ss_pred ccccccCCCCccceeeecCCCCCCCCCcccccC
Confidence 5552 6789876654
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.49 E-value=1.7 Score=31.30 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=45.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC----cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF----GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f----G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
.+..|+|.++ ..|+.++|...|..| | ..+|.-+-|. -.=|.|.|...|.+|+..|
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------------cEEEEECCHHHHHHHHHcC
Confidence 5677999998 569999999999999 4 4577776653 3779999999999999765
No 132
>KOG1365|consensus
Probab=89.34 E-value=1.3 Score=42.61 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=47.9
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcC-----cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRF-----GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAA 102 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~f-----G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~ 102 (222)
.+...-+|-+..||++.++.++.++|.+. |..+=+++.+-+ |+.- |.+||-|...++|..|+.
T Consensus 157 sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd--grpT------GdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 157 SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD--GRPT------GDAFVLFACEEDAQFALR 224 (508)
T ss_pred CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC--CCcc------cceEEEecCHHHHHHHHH
Confidence 34456788999999999999999999843 444455554422 4444 999999999999997764
No 133
>KOG2416|consensus
Probab=89.16 E-value=0.34 Score=48.61 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=53.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhc-CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSR-FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~-fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
+.....+|||.||=.-+|..+|++|+++ -|.|... ..|. .+ ..+||.|.+-++|-.....|||...
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk--IK--------ShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK--IK--------SHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH--hh--------cceeEecccHHHHHHHHHHHhcccc
Confidence 4456788999999999999999999995 5566665 4443 23 4599999999999999999999654
No 134
>KOG0804|consensus
Probab=87.84 E-value=2 Score=42.01 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=56.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...|.|=-+|-.|+..+|-.+...|= .|..|.+++|....+ ----|.|.+..+|..-.+.+||.++..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr--------ymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR--------YMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce--------EEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999998865 678999999644211 235699999999999999999998753
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.22 E-value=3 Score=30.16 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhhcCc-----ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 46 PHMNVTQLTEFMSRFG-----EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 46 ~~m~e~~Lr~lFs~fG-----~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..+++.+|-.++..-+ .|++|.|.. .|.||+-.. +.|..++..||+..+.|+++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------------NFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------------S-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------------eEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 4678889988888864 567888854 589999766 69999999999999999986
No 136
>KOG2253|consensus
Probab=85.43 E-value=0.61 Score=47.10 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=60.2
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.....-+||||+|-..+..+-++.++...|-|-++... -|||++|.++..+-+|+..|+-..++|
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------------~fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------------KFGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------------hhcccchhhHHHHHHHHHHhcccCCCc
Confidence 44567789999999999999999999999998877432 389999999999999999999999988
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
.++
T Consensus 101 ~kl 103 (668)
T KOG2253|consen 101 QKL 103 (668)
T ss_pred chh
Confidence 886
No 137
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.29 E-value=11 Score=29.88 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=48.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+-+...|+.++.+.|..+.+.+- .|..++|.+|... .+ --.-+.|.+...|..-....||+++..-.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nr------ymVLikF~~~~~Ad~Fy~~fNGk~FnslE 83 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NR------YMVLIKFRDQESADEFYEEFNGKPFNSLE 83 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ce------EEEEEEECCHHHHHHHHHHhCCCccCCCC
Confidence 33444444444444556777777765 4567788776432 22 34668999999999999999999987543
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.18 E-value=7.3 Score=28.30 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEE-EEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 47 HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEG-WIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 47 ~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~G-fVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.++-.+|+..|-.|+- .+|. ++. .| ||.|.|.++|++|....||+.+.+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~---~d~------------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR---DDR------------TGFYIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE---ecC------------CEEEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 5677899999999994 3553 222 24 59999999999999999999987765
No 139
>KOG4210|consensus
Probab=79.10 E-value=2.3 Score=38.90 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=59.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
-....|+|++-..+.+.....++..+|.+..+.+........++ |+++|.|..++.+..|+...-.....+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk------~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSK------GGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccc------cceeeccccHHHHHHHHHhhhcccccccc
Confidence 46778999999999999999999999988887777766667777 99999999999999888644334555444
No 140
>KOG2591|consensus
Probab=78.88 E-value=5.6 Score=40.00 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=57.5
Q ss_pred cccccCCccEEEEcCCCCCCCHHHHHHHhhc--CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 29 ENSKKYKKGIIYLSKVPPHMNVTQLTEFMSR--FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 29 ~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~--fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
......+++||.|.-||.....+.++.||.- .=++++|.+..++. =||.|++-.||..|...|--
T Consensus 168 kVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 168 KVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred ccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------------eEEEeecchhHHHHHHHHHH
Confidence 3346678999999999999999999999986 66888888866532 35999999999999887753
Q ss_pred --CccCCccc
Q psy3854 107 --TQIDCRKR 114 (222)
Q Consensus 107 --~~i~Grk~ 114 (222)
..|-|+.+
T Consensus 235 evk~fqgKpI 244 (684)
T KOG2591|consen 235 EVKTFQGKPI 244 (684)
T ss_pred HHHhhcCcch
Confidence 34445443
No 141
>KOG2318|consensus
Probab=78.31 E-value=6.1 Score=39.82 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=61.3
Q ss_pred cCCccEEEEcCCCC-CCCHHHHHHHhhcC----cceeEEEEecCCCCCCCC-----------------------------
Q psy3854 33 KYKKGIIYLSKVPP-HMNVTQLTEFMSRF----GEVGRVYLMPKKRKPGEK----------------------------- 78 (222)
Q Consensus 33 ~~~~g~VYIsnLP~-~m~e~~Lr~lFs~f----G~I~rv~L~~d~~tgksK----------------------------- 78 (222)
...+.+|=|-|+.| .|.-.+|--+|+.| |.|.+|.|-|..- |+.|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-GkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 45677899999998 47778999998875 5999999987542 2211
Q ss_pred ---------C----CCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 79 ---------K----PAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 79 ---------k----k~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
| .+..|-|+-|+|.+...|+.+....+|..++..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 123578999999999999999999999998753
No 142
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=76.81 E-value=4.2 Score=32.95 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=54.6
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.......+|++++|..++...+..+|..+|.+..+.+.......... ..+++.+.....+..+...+++....+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPK------SRSFVGNEASKDALESNSRGNKKKILG 294 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccc------cccccchhHHHhhhhhhccccceeecc
Confidence 44567789999999999999999999999999777776554422222 455577777777766666655555544
Q ss_pred cc
Q psy3854 112 RK 113 (222)
Q Consensus 112 rk 113 (222)
..
T Consensus 295 ~~ 296 (306)
T COG0724 295 RG 296 (306)
T ss_pred cC
Confidence 43
No 143
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.13 E-value=2.1 Score=39.74 Aligned_cols=49 Identities=18% Similarity=0.521 Sum_probs=42.4
Q ss_pred cccCCCCCCcccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCC
Q psy3854 20 YVLKPKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKK 72 (222)
Q Consensus 20 ~~~k~k~~~~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~ 72 (222)
|++-|+.. ....+..|.+.|+...|+=..+-.-|.+||+|.+|||+.+.
T Consensus 3 YkiLPkGd----D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 3 YKILPKGD----DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred ceecCCCC----ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 66777765 45667789999999999999999999999999999999876
No 144
>KOG4660|consensus
Probab=74.52 E-value=5.1 Score=39.93 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 60 FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 60 fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
.|.=.-+||..|-..... -|||||.|.+++.+-.+.++.||+.
T Consensus 413 ~gtYDFlYLPiDF~nkcN------vGYAFINm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCN------VGYAFINMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cCccceEEeccccccccc------cceeEEeecCHHHHHHHHHHHcCCc
Confidence 455555666555432222 3999999999999999999999976
No 145
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.12 E-value=10 Score=28.33 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
.+-|+-.++++++-.++++.++. || +|.+|..+.-.. +.+ -+||.+..-..|..++..|
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--------KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--------KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--------EEEEEECCCCcHHHHHHhh
Confidence 36899999999999999999998 66 677777765432 333 4999999999999998765
No 146
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.30 E-value=7 Score=29.69 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
....+.|.-..+++++-.++++.++. || +|.+|..+.-.. +.+ -+||.+..-..|..++..|
T Consensus 18 ~e~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--------KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 18 IEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--------KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--------EEEEEeCCCCcHHHHHHhh
Confidence 33457899999999999999999999 67 677887765542 433 3999999999999998765
No 147
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=72.51 E-value=10 Score=32.12 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=46.6
Q ss_pred cCCccEEEEcCCCCCCCHH----HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 33 KYKKGIIYLSKVPPHMNVT----QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~----~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
...-++|-|.=|+..|.+. .+-.-++.||+|.+|.+. |+ .-+-|.|.|-..|=.|+.....
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--------qsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--------QSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--------ceEEEEehhhHHHHHHHHhhcC
Confidence 4455677777777777654 455668899999999874 44 4699999999999999988765
No 148
>KOG4285|consensus
Probab=72.46 E-value=5.8 Score=37.16 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=48.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..-|-|-.+||.-. .-|-.+|++||+|..+... ..| .+=+|.|.++-+|.+|+. -||+.|+|-..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ng---------NwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNG---------NWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCC---------ceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 34455667777643 5677899999999987543 222 467799999999999995 79999988664
No 149
>KOG2295|consensus
Probab=69.28 E-value=0.85 Score=45.51 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.+...+++.||+|.++-+.|..+++.+--+.++.|...-... +-|.+|||.|.---.-+-|+..|||..+..-.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek------~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEK------NFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHH------HHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 356678999999999999999999999888888885432211 22468999999999999999999997765444
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 303 ~ 303 (648)
T KOG2295|consen 303 L 303 (648)
T ss_pred c
Confidence 3
No 150
>KOG4574|consensus
Probab=62.93 E-value=4.3 Score=42.54 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=51.0
Q ss_pred EEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 40 YLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 40 YIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
|+.|.+-..+-.-|..+|++||.|.++...++.. -+-|+|..-+.|-.|.+.|.|.++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------------~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------------MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc------------chhhhhHHHHHHHHhhhhhcCCccc
Confidence 5666677888999999999999999999877653 5889999999999999999998753
No 151
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.68 E-value=17 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=19.0
Q ss_pred HHHHHHhhcCcceeEEEEecCC
Q psy3854 51 TQLTEFMSRFGEVGRVYLMPKK 72 (222)
Q Consensus 51 ~~Lr~lFs~fG~I~rv~L~~d~ 72 (222)
.+||+.||..|+|.=+|+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999999996543
No 152
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=51.17 E-value=13 Score=29.61 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.2
Q ss_pred cEEEEEecchHHHHHHHHHh
Q psy3854 85 TEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 85 g~GfVEF~dk~~Ak~A~~~L 104 (222)
.|.|++|.++.++..|...|
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 79999999999988877654
No 153
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=49.27 E-value=10 Score=35.50 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=50.6
Q ss_pred EcCCCCCCCH--HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccccccc
Q psy3854 41 LSKVPPHMNV--TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHY 118 (222)
Q Consensus 41 IsnLP~~m~e--~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~ 118 (222)
.++||....+ +.||+.||.||.-..|.+ ..++ +.-|+.|.-|+-.-|+. -||.=
T Consensus 283 f~~~~~~~~dv~~~l~d~~s~~g~~~evr~----------------le~~--~K~KeaA~GaAiiAnai-AGG~y----- 338 (374)
T COG2441 283 FSRIPRFFSDVKEKLRDAFSSYGFGIEVRK----------------LESR--AKAKEAAEGAAIIANAI-AGGLY----- 338 (374)
T ss_pred cccccchhhHHHHHHHHHHhhcCccceeeh----------------hhhh--hhhhhhccchhhhhhhh-cchhH-----
Confidence 3467776665 489999999998777765 2344 56677888777666653 24432
Q ss_pred ccccccccCC-------CcccchhhHHHHHHHH
Q psy3854 119 DFIWNFKYLP-------RFKWIHLNERLAYEKQ 144 (222)
Q Consensus 119 ~~lWnikyL~-------~fkW~~L~e~~a~ek~ 144 (222)
-|-+.||. -|.|-||.+.-...+.
T Consensus 339 --relvd~l~l~essGtifd~v~l~~~d~lr~~ 369 (374)
T COG2441 339 --RELVDVLKLRESSGTIFDWVHLSERDELRRF 369 (374)
T ss_pred --HHHHHHHHHHhccCCeeeeeeccHHHHHHHH
Confidence 23444553 5899999887444433
No 154
>KOG4483|consensus
Probab=44.84 E-value=39 Score=33.04 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=47.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCccee-EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVG-RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~-rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
..-+.+|-|.++|+.+..++|-..|+.||.=+ +|.-+-| ..+|-.|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------------ceeEEeecchHHHHHHhhc
Confidence 34688999999999999999999999999754 4444332 4689999999999988854
No 155
>KOG4676|consensus
Probab=43.62 E-value=6 Score=38.29 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=48.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
-+|||++|+..+...++-++|..||+|...+..--... .+.-|+|......+.|..+ +|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s----------~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS----------SSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC----------cchhhhHhhhhhHHHHHHh-cchhhh
Confidence 56999999999999999999999999988776543321 4566999887777777654 444443
No 156
>KOG2135|consensus
Probab=38.70 E-value=17 Score=35.87 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=47.2
Q ss_pred EEcCCCCCCCHH-HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccccc
Q psy3854 40 YLSKVPPHMNVT-QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSK 116 (222)
Q Consensus 40 YIsnLP~~m~e~-~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~ 116 (222)
-+--+|+.++.. +|-..|.+||+|..|.+-... --|-|.|..+.+|-.|. .-.|..|.+|-+..
T Consensus 376 ~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 376 ALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKL 440 (526)
T ss_pred hhhccCCCCchHhhhhhhhhhcCccccccccCch------------hhheeeeeccccccchh-ccccceecCceeEE
Confidence 344477777664 999999999999999874431 35899999999996655 34666777776643
No 157
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=38.53 E-value=21 Score=27.64 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=21.6
Q ss_pred cccchhhHHHHHHHHHHH----HHHHHHHHHHHH
Q psy3854 130 FKWIHLNERLAYEKQAHR----QKLRAEIAEAKR 159 (222)
Q Consensus 130 fkW~~L~e~~a~ek~~R~----~rLr~e~~qakk 159 (222)
-+|..++..+..++..+. ++|+..+..+.+
T Consensus 63 ~~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 63 ESWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999888888777 555555554443
No 158
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.79 E-value=51 Score=23.72 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=20.3
Q ss_pred cEEEE-----EecchHHHHHHHHHhcCCcc
Q psy3854 85 TEGWI-----EFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 85 g~GfV-----EF~dk~~Ak~A~~~LNg~~i 109 (222)
..||+ --.++-.|.++|+.||++..
T Consensus 21 ~~GWl~Pgg~vi~NPlkAqR~AE~~n~~~~ 50 (60)
T PF07026_consen 21 KNGWLMPGGKVITNPLKAQRLAEELNSKQV 50 (60)
T ss_pred cceeecCCCeeEcCHHHHHHHHHHHHhhHh
Confidence 45888 45789999999999998654
No 159
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=36.03 E-value=98 Score=23.58 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPK 71 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d 71 (222)
..+.|+-..++.++-.++++.++. || +|.+|..+.-
T Consensus 19 ~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 19 KQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 357899999999999999999998 77 6667776554
No 160
>KOG4410|consensus
Probab=34.72 E-value=1.2e+02 Score=28.63 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchH
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKK 95 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~ 95 (222)
.+-||++|||.+....+|+..+-+-|-+ -+.|.- +.+||-+|..|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee----------ecCCcceeEecCCcc
Confidence 3459999999999999999999888744 222221 134578999998754
No 161
>KOG2193|consensus
Probab=33.87 E-value=2.7 Score=41.06 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=55.4
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
++.....+-|.||||...-+-|..|+.+||.|..|..+..+... ---=|.|...+.++.|+..|||-.+..
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et---------avvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET---------AVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH---------HHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 34444558999999999999999999999999998775433210 112367889999999999999987754
Q ss_pred c
Q psy3854 112 R 112 (222)
Q Consensus 112 r 112 (222)
.
T Consensus 147 ~ 147 (584)
T KOG2193|consen 147 Q 147 (584)
T ss_pred h
Confidence 3
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.86 E-value=47 Score=29.75 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=28.6
Q ss_pred EEEEecchHHHHHHHHHhcCCccCCcccccccccccccccCC---CcccchhhHH
Q psy3854 87 GWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLP---RFKWIHLNER 138 (222)
Q Consensus 87 GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~~~lWnikyL~---~fkW~~L~e~ 138 (222)
|||.|.+..+|..|++.+....- .-|.+.--| ..-|++|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----------~~~~v~~APeP~DI~W~NL~~~ 45 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----------NSWRVSPAPEPDDIIWENLSIS 45 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----------CCceEeeCCCcccccccccCCC
Confidence 79999999999999996544332 223343344 5668888554
No 163
>KOG1295|consensus
Probab=31.27 E-value=57 Score=31.35 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=52.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...-|-|-+|||.++...|-+-..+|= .|.-.++.+... +. ....|+.+||.|..+.+-..-..-.+|..+-.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~-s~---~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADE-SL---RNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccc-cc---hhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 344578899999999999998888854 344555554222 11 12347999999999999888888888877643
No 164
>TIGR03293 PhnG_redo phosphonate C-P lyase system protein PhnG. PhnH is a component of the C-P lyase system (GenProp0232) for the catabolism of phosphonate compounds. The specific function of this component is unknown. This model is based on Pfam model pfam06754.2, and has been broadened to include sequences missed by that model which are clearly true positive hits based on genome context.
Probab=31.06 E-value=1.3e+02 Score=24.90 Aligned_cols=70 Identities=17% Similarity=0.016 Sum_probs=42.0
Q ss_pred eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccccccccccccccCCCcccchhhHHHHHH
Q psy3854 63 VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYE 142 (222)
Q Consensus 63 I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~~~lWnikyL~~fkW~~L~e~~a~e 142 (222)
|++|.|.-+..+ .|||||-=.|+.-|..++ .++.-.= ..- + +.-.|.+|..-++..
T Consensus 63 VTr~~V~L~~g~---------~G~g~v~Gr~~~~A~~~A-i~DAllq-~~~---~----------~~~~~~~li~pl~~~ 118 (144)
T TIGR03293 63 VTRAAVRLNDGT---------EGYAYVLGRDKRHAELLA-VLDALLQ-APL---L----------HDELIADLIAPLAQR 118 (144)
T ss_pred EEEEEEEeCCCC---------eEEEEEecCCHHHHHHHH-HHHHHhc-CCc---c----------hhHHHHHHHHHHHHH
Confidence 578887744321 299999888888888665 2332111 110 0 122366777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy3854 143 KQAHRQKLRAEIAE 156 (222)
Q Consensus 143 k~~R~~rLr~e~~q 156 (222)
.+.+.+.-.++.+.
T Consensus 119 ~~~~~~~r~~~~aa 132 (144)
T TIGR03293 119 LAERRARRQAEAAA 132 (144)
T ss_pred HHHHHHHHHHHHhc
Confidence 77776666655544
No 165
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=30.87 E-value=1.1e+02 Score=25.27 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=42.1
Q ss_pred eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccccccccccccccCCCcccchhhHHHHHH
Q psy3854 63 VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYE 142 (222)
Q Consensus 63 I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~~~lWnikyL~~fkW~~L~e~~a~e 142 (222)
|++|.|..++.+ .|+|||-=.|++.|..++ .++.---..- +++ --|..|.+.++..
T Consensus 64 VTr~~V~l~~g~---------~G~~~v~G~d~~~A~~~A-v~DAllq~~~----~~~----------~~~~~li~~l~~~ 119 (146)
T PF06754_consen 64 VTRCAVRLEDGT---------VGYGYVLGRDKRHAELAA-VIDALLQAPL----PHA----------ELWEALIAPLAAA 119 (146)
T ss_pred EEEEEEEeCCCC---------EEEEEEcCCCHHHHHHHH-HHHHHhCCCc----chh----------HHHHHHHHHHHHH
Confidence 678888665421 299999999999998766 2332111111 111 1245567777777
Q ss_pred HHHHHHHHHHHHHH
Q psy3854 143 KQAHRQKLRAEIAE 156 (222)
Q Consensus 143 k~~R~~rLr~e~~q 156 (222)
.+.+.+...++++.
T Consensus 120 ~~~~~~~~~~~~aa 133 (146)
T PF06754_consen 120 RAERRAERAAEAAA 133 (146)
T ss_pred HHHHHHHHHHHHhc
Confidence 77776666655543
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=61 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=27.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEec
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMP 70 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~ 70 (222)
....|||||+.++..-|..++...-.+.++.+|.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4678999999999999999998877765655553
No 167
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.80 E-value=99 Score=25.92 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=47.5
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
+.....+.|+--++...+-.+|+..++. || .|.+|..+.-.. |.+| +||.+..-.+|-.++..|
T Consensus 77 ~~~E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~KK--------A~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 77 KKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLKK--------AYIRLSPDVDALDVANKI 142 (145)
T ss_pred HHHhhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-CceE--------EEEEECCCCcHHHHHHhh
Confidence 3444557888899999999999999998 66 667777665433 4444 999998888877776543
No 168
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=27.29 E-value=75 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=45.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
-..|-||..+ --+|+-+++++..|| .+|.+--|...|+-. ..||-|-....- ...+..|...
T Consensus 98 ~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~va------v~GW~e~s~~~~-~~l~~~~~~~ 159 (241)
T COG0106 98 VARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVA------VSGWQEDSGVEL-EELAKRLEEV 159 (241)
T ss_pred CCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccc------cccccccccCCH-HHHHHHHHhc
Confidence 4467888888 789999999999999 899998887666554 789988776433 3344444443
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.86 E-value=34 Score=26.20 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=25.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKR 73 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~ 73 (222)
..+..|-|++||..++++.|++.+ .|++.+..+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L-------eIhFqK~sn 82 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL-------EIHFQKPSN 82 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE-------EEEEecCCC
Confidence 345668899999999999999865 466665544
No 170
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.40 E-value=5.6e+02 Score=25.03 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=67.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhc---CcceeEEEEecCCCCCCCCCCCCCccEEE-EEecchHHHHHHHHHhc-CCccC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSR---FGEVGRVYLMPKKRKPGEKKPAKQFTEGW-IEFLKKKVAKQVAAQYN-NTQID 110 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~---fG~I~rv~L~~d~~tgksKkk~~~~g~Gf-VEF~dk~~Ak~A~~~LN-g~~i~ 110 (222)
...|.|.-||+.++.+.+.+.... =|++.-|.=..|..+ +. |.-| |++.....++.....|= -+.+.
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~-~~-------~vrivI~lk~~~~~~~~~~~L~k~t~L~ 296 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESD-RE-------GIRFVIELKRGAMAEVVLNGLYKVTKLQ 296 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccC-CC-------ceEEEEEECCCccHHHHHHHHHHhcCCc
Confidence 467999999999999988876543 343333322344322 21 5667 56665555655444332 12221
Q ss_pred Cccccccccccccc---ccCCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHchHH
Q psy3854 111 CRKRSKHYDFIWNF---KYLPRFKWIH-LNERLAYEKQAHRQKLRAEIAEAKREA------LYFSNNLDV 170 (222)
Q Consensus 111 Grk~~~~~~~lWni---kyL~~fkW~~-L~e~~a~ek~~R~~rLr~e~~qakke~------n~ylknld~ 170 (222)
.. |...+..+ ..+..+...+ |.+.+......=..|.+.++.++..+. --|+.+++.
T Consensus 297 ~s----~~~Nm~~~~~~g~p~~~~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id~ 362 (445)
T cd00187 297 TT----FGINMVAFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDE 362 (445)
T ss_pred ee----eeeeEEEEecCCeeEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 00000000 0112334444 456677777777788887787777665 456667763
No 171
>COG3624 PhnG Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.49 E-value=2.8e+02 Score=23.45 Aligned_cols=73 Identities=25% Similarity=0.157 Sum_probs=44.9
Q ss_pred ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccccccccccccccCCCcccch--hhHHH
Q psy3854 62 EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIH--LNERL 139 (222)
Q Consensus 62 ~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~~~~~~lWnikyL~~fkW~~--L~e~~ 139 (222)
.|+|+.+...+.++ ..|+|||-=.||..|+.|+-. + .||--- -.+.|.. |.+-+
T Consensus 66 TvTRa~VrL~~~~~-------~vGh~yv~Grdk~~AelaAi~-D--------------ALlQ~~--~~~~~~~~~li~Pl 121 (151)
T COG3624 66 TVTRATVRLEDGTG-------TVGHGYVLGRDKRHAELAALI-D--------------ALLQQP--DHRAEIEAELIEPL 121 (151)
T ss_pred eEEEEEEEccCCCc-------ccceeeeecCChhHhHHHHHH-H--------------HHhcCh--hhhhhHHHHHHhHH
Confidence 46788776665332 239999999999999988731 1 111000 0112333 67778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3854 140 AYEKQAHRQKLRAEIAEAK 158 (222)
Q Consensus 140 a~ek~~R~~rLr~e~~qak 158 (222)
+...++|+++-.+|.+..|
T Consensus 122 ~a~~~~r~~~k~~e~AATk 140 (151)
T COG3624 122 AARLQARRAAKQAETAATK 140 (151)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 8877777777666665543
No 172
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.16 E-value=63 Score=24.43 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=40.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecCCCCCCCCCCC------CCccEEEEEecch
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPKKRKPGEKKPA------KQFTEGWIEFLKK 94 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d~~tgksKkk~------~~~g~GfVEF~dk 94 (222)
...+.|.-.+|++++-.+|++.+.. || +|.+|..+.-. |+.+|.+ ..|--++|.+...
T Consensus 18 ~~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~--gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 18 ENPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYP--GKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp HHSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEET--SEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred hcCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeC--CCceEeCCccccCCCcEEEEEEeCCC
Confidence 4457899999999999999999998 77 66677776543 3332211 1234577887765
No 173
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.41 E-value=78 Score=27.87 Aligned_cols=24 Identities=8% Similarity=0.366 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhh
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMS 58 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs 58 (222)
....+.|||||+..+..-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 466789999999999999999998
No 174
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.09 E-value=1.2e+02 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcce
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEV 63 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I 63 (222)
.+||.+.++..+...|.++...+|--
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 57888888899999999999999963
No 175
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.91 E-value=3.2e+02 Score=19.51 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=33.0
Q ss_pred EEcCCCCCCCHHHHHHHh-------hcCcceeEEEEecCCCCCCCCCCCCCccEEE-EEecchHHH
Q psy3854 40 YLSKVPPHMNVTQLTEFM-------SRFGEVGRVYLMPKKRKPGEKKPAKQFTEGW-IEFLKKKVA 97 (222)
Q Consensus 40 YIsnLP~~m~e~~Lr~lF-------s~fG~I~rv~L~~d~~tgksKkk~~~~g~Gf-VEF~dk~~A 97 (222)
-+-.+.+.++++++.+++ ...-.|.++.+-++..... ..+.|.+|| +.|.|.++-
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~---~~~~~~~~~~~~F~s~~~l 67 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPED---LAKGYDHALVSTFESEEDL 67 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSS---TSTT-SEEEEEEESSHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCccc---ccCCCcEEEEEEECCHHHH
Confidence 344678888888875544 3445567888766543222 124578999 566665543
No 176
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=20.05 E-value=1e+02 Score=24.26 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=38.3
Q ss_pred cceeEEEEecCCCCCCCCCCCCCccEEEEEec-chHHHHHHHHHhcCCccCCcccccccccccccccCC--CcccchhhH
Q psy3854 61 GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFL-KKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLP--RFKWIHLNE 137 (222)
Q Consensus 61 G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~-dk~~Ak~A~~~LNg~~i~Grk~~~~~~~lWnikyL~--~fkW~~L~e 137 (222)
=.|+.|.+.+|-. +..-||.+. +....+.++..||...=. ++..-..-++++|.| .|.+.+-.|
T Consensus 33 vtVt~V~lS~Dl~----------~AkVyvs~~~~~~~~~~~l~~L~~~~g~---iR~~l~k~l~lR~~P~L~F~~D~s~e 99 (114)
T TIGR00082 33 LTVTKVEVSKDLQ----------HAKVFVDCYGDEEAIDRVVKALNKAKGF---IRSLLGQAMRLRKTPELHFVKDNSLD 99 (114)
T ss_pred EEEeEEEECCCCC----------EEEEEEEECCChhhHHHHHHHHHHHHHH---HHHHHHhhCCceECCEEEEEecCcHH
Confidence 3678888887743 145677776 455557888888863211 111222334688999 566666544
Q ss_pred H
Q psy3854 138 R 138 (222)
Q Consensus 138 ~ 138 (222)
.
T Consensus 100 ~ 100 (114)
T TIGR00082 100 K 100 (114)
T ss_pred H
Confidence 3
Done!