Query psy3854
Match_columns 222
No_of_seqs 240 out of 1263
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:09:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 8.5E-21 2.9E-25 143.1 9.1 76 34-115 17-92 (99)
2 4f25_A Polyadenylate-binding p 99.8 1.6E-21 5.6E-26 149.7 2.5 73 35-115 4-76 (115)
3 3s8s_A Histone-lysine N-methyl 99.8 9E-20 3.1E-24 140.2 9.4 75 35-115 5-79 (110)
4 3md1_A Nuclear and cytoplasmic 99.8 3.1E-19 1.1E-23 127.5 9.0 73 37-115 2-74 (83)
5 3p5t_L Cleavage and polyadenyl 99.8 1.5E-19 5E-24 132.6 6.4 73 37-115 2-76 (90)
6 2lxi_A RNA-binding protein 10; 99.8 8.6E-20 2.9E-24 135.2 5.0 74 36-115 1-76 (91)
7 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.6E-19 1.6E-23 127.2 8.4 76 34-115 5-80 (85)
8 1x4e_A RNA binding motif, sing 99.8 3E-19 1E-23 128.7 7.4 75 35-115 4-78 (85)
9 2la6_A RNA-binding protein FUS 99.8 1E-18 3.4E-23 129.7 10.2 78 32-115 9-94 (99)
10 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.7E-19 2.3E-23 126.8 8.8 75 35-115 5-79 (87)
11 3ns6_A Eukaryotic translation 99.8 2E-19 7E-24 134.9 6.2 74 35-114 5-85 (100)
12 2lkz_A RNA-binding protein 5; 99.8 3.1E-19 1.1E-23 134.6 6.8 75 35-115 8-88 (95)
13 2dnz_A Probable RNA-binding pr 99.8 1.5E-18 5.2E-23 127.1 10.3 75 35-115 4-78 (95)
14 1x5u_A Splicing factor 3B subu 99.8 1.7E-18 5.7E-23 129.3 10.6 78 32-115 11-88 (105)
15 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4E-23 127.5 9.2 77 33-115 13-89 (94)
16 2khc_A Testis-specific RNP-typ 99.8 4.2E-18 1.4E-22 129.8 12.6 77 33-115 37-113 (118)
17 2x1f_A MRNA 3'-END-processing 99.8 1.2E-18 4.3E-23 128.5 9.3 74 36-115 2-75 (96)
18 1p27_B RNA-binding protein 8A; 99.8 1.5E-18 5.1E-23 129.7 9.8 78 32-115 19-96 (106)
19 1whw_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 128.6 9.3 76 34-115 6-81 (99)
20 2dnm_A SRP46 splicing factor; 99.8 1.2E-18 4.1E-23 129.9 9.1 77 33-115 10-86 (103)
21 4a8x_A RNA-binding protein wit 99.8 6E-19 2E-23 127.1 7.2 75 35-115 3-78 (88)
22 2krb_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 126.3 7.5 70 37-114 2-78 (81)
23 1s79_A Lupus LA protein; RRM, 99.8 1.3E-18 4.3E-23 132.5 9.2 74 34-115 9-82 (103)
24 2mss_A Protein (musashi1); RNA 99.8 6.4E-19 2.2E-23 124.2 6.9 70 38-114 1-70 (75)
25 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 130.1 8.5 78 32-115 11-88 (103)
26 2cqc_A Arginine/serine-rich sp 99.8 1.9E-18 6.6E-23 126.3 9.2 77 33-115 12-88 (95)
27 2cph_A RNA binding motif prote 99.8 3.6E-18 1.2E-22 127.6 10.6 78 32-115 11-90 (107)
28 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-18 6.2E-23 128.5 8.9 77 33-115 9-85 (102)
29 2dgs_A DAZ-associated protein 99.8 4.2E-18 1.4E-22 126.1 10.5 75 34-115 8-82 (99)
30 1x5t_A Splicing factor 3B subu 99.8 1.6E-18 5.5E-23 127.2 8.1 75 35-115 4-79 (96)
31 2div_A TRNA selenocysteine ass 99.8 2E-18 6.7E-23 127.6 8.6 74 34-113 7-81 (99)
32 2dgp_A Bruno-like 4, RNA bindi 99.8 2.3E-18 7.8E-23 128.7 8.8 78 32-115 9-89 (106)
33 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-18 1.1E-22 128.9 9.6 77 33-115 23-99 (110)
34 3s7r_A Heterogeneous nuclear r 99.8 2.8E-18 9.7E-23 124.0 8.8 76 32-114 7-82 (87)
35 3ucg_A Polyadenylate-binding p 99.8 2.9E-18 1E-22 123.9 8.9 74 35-115 5-78 (89)
36 2jrs_A RNA-binding protein 39; 99.8 3.6E-18 1.2E-22 130.1 9.7 77 33-115 23-99 (108)
37 2do4_A Squamous cell carcinoma 99.8 3E-18 1E-22 127.1 9.0 75 34-115 15-89 (100)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-18 5.3E-23 128.8 7.2 76 34-115 10-85 (102)
39 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-18 1.5E-22 129.2 9.6 77 33-115 12-88 (115)
40 2dnh_A Bruno-like 5, RNA bindi 99.7 6.6E-18 2.3E-22 126.0 10.4 74 34-114 13-89 (105)
41 2ywk_A Putative RNA-binding pr 99.7 3.8E-18 1.3E-22 125.0 8.9 75 34-115 14-88 (95)
42 3n9u_C Cleavage and polyadenyl 99.7 5.1E-18 1.7E-22 138.1 10.5 75 35-115 54-130 (156)
43 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-18 5.9E-23 122.0 6.8 72 37-115 1-72 (77)
44 1x5o_A RNA binding motif, sing 99.7 1.3E-17 4.5E-22 126.3 11.9 75 33-114 22-96 (114)
45 2d9p_A Polyadenylate-binding p 99.7 5.7E-18 1.9E-22 126.2 9.7 75 33-115 12-86 (103)
46 1x4h_A RNA-binding protein 28; 99.7 6.8E-18 2.3E-22 126.9 10.1 77 33-115 12-94 (111)
47 2ki2_A SS-DNA binding protein 99.7 1.1E-18 3.7E-23 127.0 5.5 72 37-115 2-73 (90)
48 2m2b_A RNA-binding protein 10; 99.7 3.8E-18 1.3E-22 133.4 9.0 75 34-115 21-101 (131)
49 2cpi_A CCR4-NOT transcription 99.7 2.8E-18 9.4E-23 130.7 7.9 82 31-115 10-94 (111)
50 2cpz_A CUG triplet repeat RNA- 99.7 5E-18 1.7E-22 129.1 9.3 76 34-115 23-98 (115)
51 2fy1_A RNA-binding motif prote 99.7 5.6E-18 1.9E-22 130.5 9.7 75 34-115 5-79 (116)
52 2ek1_A RNA-binding protein 12; 99.7 1.5E-18 5.3E-23 127.1 6.1 75 35-115 14-88 (95)
53 3ulh_A THO complex subunit 4; 99.7 5.1E-18 1.7E-22 127.0 9.0 75 34-115 27-101 (107)
54 2cpf_A RNA binding motif prote 99.7 2.4E-18 8.2E-23 127.0 7.0 75 35-115 4-81 (98)
55 2dhg_A TRNA selenocysteine ass 99.7 5.9E-18 2E-22 126.1 9.1 74 35-115 8-83 (104)
56 2kn4_A Immunoglobulin G-bindin 99.7 6.6E-18 2.2E-22 134.5 9.6 77 33-115 67-143 (158)
57 1p1t_A Cleavage stimulation fa 99.7 3E-18 1E-22 127.4 7.1 75 35-115 7-81 (104)
58 3ex7_B RNA-binding protein 8A; 99.7 8.1E-18 2.8E-22 129.6 9.7 76 34-115 20-95 (126)
59 2nlw_A Eukaryotic translation 99.7 4.5E-18 1.5E-22 128.3 7.9 74 34-115 13-93 (105)
60 2cqp_A RNA-binding protein 12; 99.7 2.2E-18 7.5E-23 127.2 5.9 76 34-115 13-88 (98)
61 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-17 4.3E-22 121.5 9.5 74 34-115 6-79 (92)
62 1wi8_A EIF-4B, eukaryotic tran 99.7 1E-17 3.5E-22 125.2 9.2 74 34-115 13-87 (104)
63 2cpe_A RNA-binding protein EWS 99.7 8.7E-18 3E-22 127.1 8.9 77 33-115 12-96 (113)
64 2cq4_A RNA binding motif prote 99.7 5.8E-18 2E-22 128.5 7.9 75 34-115 23-97 (114)
65 2dng_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 124.7 9.4 74 34-115 13-86 (103)
66 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.9E-22 129.8 9.6 78 32-115 59-136 (140)
67 2cq3_A RNA-binding protein 9; 99.7 2.2E-17 7.6E-22 123.0 10.6 76 32-115 11-86 (103)
68 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-17 4.9E-22 130.2 10.0 78 32-115 38-115 (139)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.4E-18 2.5E-22 125.9 7.7 76 32-115 15-91 (100)
70 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.8E-17 6E-22 123.5 9.7 75 33-115 12-86 (103)
71 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4.2E-22 131.4 9.2 76 34-115 44-119 (129)
72 2jwn_A Embryonic polyadenylate 99.7 7.6E-18 2.6E-22 129.4 7.7 77 32-115 32-108 (124)
73 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-18 1.6E-22 119.5 5.9 71 38-115 1-71 (75)
74 2dgx_A KIAA0430 protein; RRM d 99.7 9.7E-18 3.3E-22 124.4 7.9 72 35-115 8-83 (96)
75 2err_A Ataxin-2-binding protei 99.7 1.2E-17 4.2E-22 126.9 8.6 85 23-115 16-100 (109)
76 2kt5_A RNA and export factor-b 99.7 6.4E-17 2.2E-21 124.7 12.6 77 32-115 31-107 (124)
77 2j8a_A Histone-lysine N-methyl 99.7 7.4E-18 2.5E-22 136.5 7.6 107 36-157 2-123 (136)
78 2cqd_A RNA-binding region cont 99.7 1.8E-17 6.2E-22 126.1 9.2 76 33-115 14-89 (116)
79 2wbr_A GW182, gawky, LD47780P; 99.7 9.6E-18 3.3E-22 127.1 7.4 69 35-115 6-74 (89)
80 1sjq_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 128.5 8.7 71 33-115 13-85 (105)
81 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-17 7.8E-22 131.8 9.5 78 32-115 35-112 (156)
82 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.6E-22 124.6 7.6 75 34-115 14-88 (105)
83 1x4b_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 126.2 8.4 76 33-115 24-99 (116)
84 2rs2_A Musashi-1, RNA-binding 99.7 1.7E-17 5.8E-22 126.3 8.1 78 31-115 20-97 (109)
85 2do0_A HnRNP M, heterogeneous 99.7 2.6E-17 8.8E-22 124.5 8.9 74 35-115 14-87 (114)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.6E-17 9E-22 133.3 9.1 78 32-115 68-145 (165)
87 2dis_A Unnamed protein product 99.7 2.8E-17 9.7E-22 123.3 8.5 75 35-115 7-85 (109)
88 1x4d_A Matrin 3; structural ge 99.7 1.3E-17 4.3E-22 128.0 6.4 69 35-115 14-85 (102)
89 1wg5_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 122.7 8.8 75 34-116 13-88 (104)
90 1wel_A RNA-binding protein 12; 99.7 1.4E-17 4.8E-22 128.8 6.0 75 34-115 23-97 (124)
91 2a3j_A U1 small nuclear ribonu 99.7 4.3E-17 1.5E-21 129.1 9.0 72 35-115 28-103 (127)
92 4f02_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 136.3 9.0 74 36-115 15-88 (213)
93 3lqv_A PRE-mRNA branch site pr 99.7 8.1E-17 2.8E-21 122.1 9.9 72 35-115 7-78 (115)
94 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6.1E-22 131.2 6.4 80 30-115 41-120 (135)
95 1x4a_A Splicing factor, argini 99.7 1.1E-16 3.9E-21 120.5 10.4 74 33-115 19-92 (109)
96 2cpy_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 125.2 7.5 75 33-115 12-87 (114)
97 1fxl_A Paraneoplastic encephal 99.7 5.9E-17 2E-21 126.7 9.1 74 36-115 2-75 (167)
98 2dgw_A Probable RNA-binding pr 99.7 5.7E-17 2E-21 118.2 8.0 73 34-115 8-80 (91)
99 3q2s_C Cleavage and polyadenyl 99.7 3.9E-17 1.3E-21 140.2 8.1 75 35-115 67-143 (229)
100 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-17 4.4E-22 123.9 4.4 73 35-115 16-88 (101)
101 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-17 1.6E-21 123.2 7.4 75 33-116 12-86 (102)
102 2cqg_A TDP-43, TAR DNA-binding 99.7 8.7E-17 3E-21 119.8 8.9 75 33-115 12-86 (103)
103 2lmi_A GRSF-1, G-rich sequence 99.7 3.7E-17 1.3E-21 123.7 6.9 74 34-115 9-85 (107)
104 3r27_A HnRNP L, heterogeneous 99.7 6.9E-17 2.4E-21 124.2 8.5 68 35-114 20-89 (100)
105 3md3_A Nuclear and cytoplasmic 99.7 9.9E-17 3.4E-21 125.3 9.5 78 32-115 83-160 (166)
106 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-17 2.2E-21 127.2 8.2 75 35-115 2-76 (168)
107 1whx_A Hypothetical protein ri 99.7 7.3E-17 2.5E-21 123.4 8.0 69 35-115 9-77 (111)
108 2xs2_A Deleted in azoospermia- 99.7 2.9E-17 9.8E-22 122.2 5.4 73 34-115 7-79 (102)
109 2hvz_A Splicing factor, argini 99.7 5.5E-17 1.9E-21 120.5 6.9 68 37-115 1-68 (101)
110 2cpx_A Hypothetical protein FL 99.7 4.2E-17 1.4E-21 123.5 6.3 75 35-115 24-98 (115)
111 2ytc_A PRE-mRNA-splicing facto 99.7 1.8E-16 6.1E-21 113.8 9.1 70 34-115 10-80 (85)
112 2la4_A Nuclear and cytoplasmic 99.7 1.6E-16 5.4E-21 117.9 9.0 70 34-115 25-94 (101)
113 2g4b_A Splicing factor U2AF 65 99.7 1E-16 3.4E-21 126.8 8.3 76 34-115 92-167 (172)
114 1why_A Hypothetical protein ri 99.7 1.9E-16 6.4E-21 117.0 9.2 70 34-115 15-86 (97)
115 2cpj_A Non-POU domain-containi 99.7 1.9E-16 6.5E-21 117.3 9.3 71 33-115 12-82 (99)
116 1wex_A Hypothetical protein (r 99.7 2.1E-16 7.2E-21 120.9 9.6 69 35-115 14-84 (104)
117 2dnq_A RNA-binding protein 4B; 99.7 2.4E-16 8.2E-21 114.9 9.3 68 34-115 6-73 (90)
118 2jvr_A Nucleolar protein 3; RN 99.7 7.5E-17 2.6E-21 125.1 7.0 73 33-115 25-98 (111)
119 2i2y_A Fusion protein consists 99.7 1.9E-16 6.6E-21 125.7 9.4 73 32-115 69-141 (150)
120 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-16 6.3E-21 119.5 8.7 72 32-115 21-92 (109)
121 2cq1_A PTB-like protein L; RRM 99.7 3.2E-16 1.1E-20 119.4 10.0 69 35-115 14-84 (101)
122 1nu4_A U1A RNA binding domain; 99.7 5.4E-17 1.9E-21 119.2 5.4 72 35-115 7-82 (97)
123 2db1_A Heterogeneous nuclear r 99.7 8E-17 2.8E-21 124.4 6.6 73 35-115 16-91 (118)
124 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.4E-21 124.9 8.6 69 35-115 30-100 (119)
125 2dgt_A RNA-binding protein 30; 99.7 2.4E-16 8.4E-21 115.3 8.6 70 32-115 6-75 (92)
126 2cpd_A Apobec-1 stimulating pr 99.7 3.8E-16 1.3E-20 115.7 9.7 70 32-115 11-82 (99)
127 2e5j_A Methenyltetrahydrofolat 99.7 3.9E-16 1.3E-20 115.5 9.7 72 33-115 16-87 (97)
128 2fc9_A NCL protein; structure 99.7 2.2E-16 7.6E-21 117.1 8.3 72 34-115 13-84 (101)
129 1x4f_A Matrin 3; structural ge 99.7 2.1E-16 7.3E-21 123.4 8.6 69 35-115 24-95 (112)
130 2hgl_A HNRPF protein, heteroge 99.7 7.5E-17 2.6E-21 129.2 6.2 74 34-115 42-118 (136)
131 2xnq_A Nuclear polyadenylated 99.7 3.2E-16 1.1E-20 116.9 9.2 70 32-115 18-88 (97)
132 2e44_A Insulin-like growth fac 99.7 2E-16 6.9E-21 116.1 7.8 72 34-115 13-85 (96)
133 2dnp_A RNA-binding protein 14; 99.7 2E-16 6.7E-21 115.4 7.7 69 33-115 6-74 (90)
134 2dnn_A RNA-binding protein 12; 99.7 2.1E-16 7E-21 122.0 8.2 72 35-115 15-86 (109)
135 1fxl_A Paraneoplastic encephal 99.7 3.7E-16 1.3E-20 122.2 9.5 75 34-114 86-160 (167)
136 2qfj_A FBP-interacting repress 99.7 3.3E-16 1.1E-20 128.1 9.6 75 35-115 27-101 (216)
137 2qfj_A FBP-interacting repress 99.7 3.7E-16 1.3E-20 127.8 9.8 76 34-115 123-198 (216)
138 2lcw_A RNA-binding protein FUS 99.5 8.6E-18 2.9E-22 128.2 0.0 76 34-115 5-88 (116)
139 2kvi_A Nuclear polyadenylated 99.6 4E-16 1.4E-20 115.4 8.7 68 34-115 8-76 (96)
140 1x4c_A Splicing factor, argini 99.6 3.3E-16 1.1E-20 118.4 8.4 65 34-111 13-77 (108)
141 2dnl_A Cytoplasmic polyadenyla 99.6 3E-16 1E-20 119.8 8.3 66 35-107 7-78 (114)
142 2jvo_A Nucleolar protein 3; nu 99.6 4E-16 1.4E-20 118.9 8.7 70 32-115 27-96 (108)
143 1l3k_A Heterogeneous nuclear r 99.6 3.2E-16 1.1E-20 126.4 8.6 76 33-115 10-85 (196)
144 2f3j_A RNA and export factor b 99.6 4.3E-16 1.5E-20 128.9 9.5 75 34-115 86-160 (177)
145 1b7f_A Protein (SXL-lethal pro 99.6 6.8E-16 2.3E-20 121.3 10.2 76 33-114 86-163 (168)
146 2fc8_A NCL protein; structure 99.6 4.3E-16 1.5E-20 115.5 8.4 76 31-115 10-85 (102)
147 2cjk_A Nuclear polyadenylated 99.6 2E-16 7E-21 124.5 6.8 75 34-115 85-159 (167)
148 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-16 4.4E-21 117.2 5.1 72 33-115 13-84 (96)
149 1wf1_A RNA-binding protein RAL 99.6 1.2E-15 4.2E-20 115.1 10.5 67 35-115 26-93 (110)
150 3beg_B Splicing factor, argini 99.6 3.9E-16 1.3E-20 119.8 7.6 67 35-114 15-81 (115)
151 3nmr_A Cugbp ELAV-like family 99.6 5.6E-16 1.9E-20 122.2 8.7 71 35-111 2-74 (175)
152 2dha_A FLJ20171 protein; RRM d 99.6 2.5E-16 8.7E-21 124.1 6.6 76 33-116 20-99 (123)
153 2dgu_A Heterogeneous nuclear r 99.6 3.9E-16 1.3E-20 116.6 7.2 67 35-115 10-76 (103)
154 2e5g_A U6 snRNA-specific termi 99.6 8.4E-16 2.9E-20 113.1 8.8 70 34-115 6-75 (94)
155 3md3_A Nuclear and cytoplasmic 99.6 4.1E-16 1.4E-20 121.7 7.5 71 38-115 2-72 (166)
156 2yh0_A Splicing factor U2AF 65 99.6 6.1E-16 2.1E-20 124.9 8.7 76 34-115 112-187 (198)
157 2hgn_A Heterogeneous nuclear r 99.6 2.4E-16 8.4E-21 126.7 5.8 75 33-116 43-117 (139)
158 3egn_A RNA-binding protein 40; 99.6 7.4E-17 2.5E-21 127.1 2.5 76 34-115 43-123 (143)
159 3tyt_A Heterogeneous nuclear r 99.6 8.5E-16 2.9E-20 129.3 9.1 70 35-115 3-73 (205)
160 2cjk_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 120.2 8.8 72 35-114 2-73 (167)
161 2cq2_A Hypothetical protein LO 99.6 5.4E-16 1.8E-20 121.7 6.9 63 35-109 24-88 (114)
162 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.8E-20 121.2 8.7 74 34-116 40-115 (126)
163 3pgw_S U1-70K; protein-RNA com 99.6 1E-15 3.5E-20 143.0 9.6 76 34-115 100-175 (437)
164 3nmr_A Cugbp ELAV-like family 99.6 1.7E-15 6E-20 119.4 9.1 74 34-114 93-169 (175)
165 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 109.5 7.5 68 35-115 5-83 (87)
166 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 122.2 8.8 75 34-115 102-176 (196)
167 4f02_A Polyadenylate-binding p 99.6 9.8E-16 3.4E-20 127.8 7.7 74 34-115 101-174 (213)
168 2cqh_A IGF-II mRNA-binding pro 99.6 5.6E-16 1.9E-20 113.4 5.5 68 35-115 7-76 (93)
169 1wg1_A KIAA1579 protein, homol 99.6 8.6E-16 2.9E-20 112.0 6.1 68 35-115 4-71 (88)
170 3d2w_A TAR DNA-binding protein 99.6 1.7E-15 5.7E-20 111.7 7.4 68 32-114 7-76 (89)
171 2pe8_A Splicing factor 45; RRM 99.6 5.7E-15 2E-19 113.0 9.5 76 34-115 6-87 (105)
172 3sde_A Paraspeckle component 1 99.6 7.6E-15 2.6E-19 126.1 11.1 73 35-114 95-171 (261)
173 3zzy_A Polypyrimidine tract-bi 99.6 2.8E-15 9.5E-20 120.2 7.7 69 35-114 27-98 (130)
174 2e5i_A Heterogeneous nuclear r 99.6 8E-15 2.7E-19 116.2 10.1 66 35-112 24-90 (124)
175 3smz_A Protein raver-1, ribonu 99.6 1.4E-15 4.7E-20 130.6 5.4 75 34-115 182-257 (284)
176 1sjr_A Polypyrimidine tract-bi 99.6 5.4E-15 1.8E-19 122.9 8.4 72 34-115 44-117 (164)
177 2voo_A Lupus LA protein; RNA-b 99.6 3.2E-15 1.1E-19 125.0 6.6 75 33-115 106-180 (193)
178 1x5p_A Negative elongation fac 99.6 1E-14 3.5E-19 107.8 8.7 68 34-115 13-80 (97)
179 3tyt_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 124.6 7.2 71 36-114 123-195 (205)
180 3smz_A Protein raver-1, ribonu 99.5 1.3E-14 4.6E-19 124.4 9.4 75 35-115 94-168 (284)
181 1fje_B Nucleolin RBD12, protei 99.5 1E-14 3.5E-19 116.0 8.0 73 32-115 95-167 (175)
182 3sde_A Paraspeckle component 1 99.5 1.7E-14 5.9E-19 123.9 9.8 72 32-115 18-89 (261)
183 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 121.3 9.0 74 31-115 29-103 (229)
184 2diu_A KIAA0430 protein; struc 99.5 1.7E-14 5.9E-19 110.7 8.0 65 35-115 8-77 (96)
185 1qm9_A Polypyrimidine tract-bi 99.5 1.1E-14 3.9E-19 118.4 7.2 69 36-115 3-72 (198)
186 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-14 4.2E-19 125.1 7.4 76 33-115 207-284 (292)
187 3pgw_A U1-A; protein-RNA compl 99.5 2.5E-14 8.6E-19 122.6 9.1 72 35-115 8-83 (282)
188 2ghp_A U4/U6 snRNA-associated 99.5 3.5E-14 1.2E-18 122.3 9.2 78 29-115 34-111 (292)
189 1fje_B Nucleolin RBD12, protei 99.5 5.2E-15 1.8E-19 117.8 3.2 76 32-115 9-84 (175)
190 1qm9_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 113.9 9.7 70 35-115 119-190 (198)
191 3v4m_A Splicing factor U2AF 65 99.5 3.9E-14 1.3E-18 108.2 7.7 74 36-115 5-90 (105)
192 2bz2_A Negative elongation fac 99.5 6E-14 2E-18 109.3 8.5 68 34-115 37-104 (121)
193 1wf0_A TDP-43, TAR DNA-binding 99.5 3.6E-14 1.2E-18 102.9 6.3 65 35-114 4-70 (88)
194 3pgw_A U1-A; protein-RNA compl 99.5 6.4E-14 2.2E-18 120.1 8.8 70 35-115 206-276 (282)
195 2adc_A Polypyrimidine tract-bi 99.5 1.8E-13 6.2E-18 115.2 9.5 70 35-115 150-221 (229)
196 1jmt_A Splicing factor U2AF 35 99.4 2.5E-14 8.7E-19 109.0 3.0 68 41-115 20-99 (104)
197 3ue2_A Poly(U)-binding-splicin 99.4 1E-13 3.4E-18 108.6 6.2 75 35-115 19-102 (118)
198 2g4b_A Splicing factor U2AF 65 99.4 1.7E-13 5.8E-18 108.2 7.3 68 35-115 3-81 (172)
199 2dit_A HIV TAT specific factor 99.4 3.7E-13 1.3E-17 102.5 8.8 74 32-115 11-95 (112)
200 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-13 5.2E-18 120.1 7.2 64 34-109 132-204 (240)
201 2yh0_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 108.7 6.8 68 35-115 3-81 (198)
202 3tht_A Alkylated DNA repair pr 99.4 5.2E-13 1.8E-17 122.2 7.8 64 34-109 16-81 (345)
203 3s6e_A RNA-binding protein 39; 99.2 2.1E-11 7.2E-16 94.9 8.5 71 35-115 6-86 (114)
204 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.1E-11 7E-16 92.9 7.6 57 45-114 26-82 (100)
205 1owx_A Lupus LA protein, SS-B, 99.2 6E-11 2E-15 94.1 8.4 67 35-113 17-87 (121)
206 3dxb_A Thioredoxin N-terminall 99.0 4.8E-10 1.7E-14 93.7 7.3 62 48-115 141-206 (222)
207 2dnr_A Synaptojanin-1; RRM dom 99.0 3.5E-10 1.2E-14 85.9 5.2 66 35-115 6-79 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 2.5E-09 8.6E-14 81.8 5.4 66 35-115 14-88 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 2E-07 6.7E-12 73.5 7.2 69 35-115 20-93 (117)
210 1uw4_A UPF3X; nonsense mediate 97.6 0.00033 1.1E-08 52.8 8.3 74 37-114 2-75 (91)
211 3ctr_A Poly(A)-specific ribonu 97.5 0.00012 4E-09 56.4 5.5 64 35-113 5-69 (101)
212 1whv_A Poly(A)-specific ribonu 97.4 0.00052 1.8E-08 52.7 7.9 59 32-105 12-70 (100)
213 1wey_A Calcipressin 1; structu 97.1 0.00068 2.3E-08 52.4 5.4 74 35-120 4-82 (104)
214 2dhx_A Poly (ADP-ribose) polym 97.0 0.0028 9.5E-08 49.0 7.6 64 36-113 8-80 (104)
215 2l08_A Regulator of nonsense t 96.6 0.0026 9E-08 48.5 4.8 74 38-115 11-84 (97)
216 3pq1_A Poly(A) RNA polymerase; 95.6 0.0059 2E-07 57.8 3.3 58 32-101 49-106 (464)
217 2kn4_A Immunoglobulin G-bindin 95.3 0.011 3.7E-07 46.0 3.1 35 65-107 2-36 (158)
218 1wwh_A Nucleoporin 35, nucleop 94.8 0.072 2.5E-06 41.9 6.7 67 33-113 21-87 (119)
219 3d45_A Poly(A)-specific ribonu 94.1 0.15 5.3E-06 48.3 8.6 59 34-107 438-496 (507)
220 2i2y_A Fusion protein consists 91.8 0.049 1.7E-06 42.1 1.2 29 85-114 14-43 (150)
221 3p3d_A Nucleoporin 53; structu 87.5 0.43 1.5E-05 38.1 3.5 74 37-112 8-89 (132)
222 3pgw_S U1-70K; protein-RNA com 82.2 0.049 1.7E-06 50.5 -5.0 54 52-106 8-63 (437)
223 4f25_A Polyadenylate-binding p 79.0 0.43 1.5E-05 35.3 0.2 21 32-52 93-113 (115)
224 2g0c_A ATP-dependent RNA helic 63.9 11 0.00039 25.7 4.8 56 45-115 10-70 (76)
225 3fut_A Dimethyladenosine trans 30.5 34 0.0012 29.3 3.2 33 37-70 111-143 (271)
226 3tqs_A Ribosomal RNA small sub 28.2 16 0.00055 31.0 0.7 33 38-70 98-130 (255)
227 3j21_T 50S ribosomal protein L 28.0 50 0.0017 24.1 3.3 62 34-104 20-83 (86)
228 3uzu_A Ribosomal RNA small sub 28.0 24 0.00081 30.3 1.8 34 37-70 115-148 (279)
229 3tbg_A Cytochrome P450 2D6; mo 26.9 1.7E+02 0.0059 25.1 7.2 58 40-113 20-80 (479)
230 3swz_A Steroid 17-alpha-hydrox 26.4 68 0.0023 28.1 4.6 61 37-113 15-79 (494)
231 3ts2_A Protein LIN-28 homolog 25.4 16 0.00053 29.0 0.1 28 51-92 2-29 (148)
232 3ftd_A Dimethyladenosine trans 23.0 51 0.0017 27.5 2.9 33 37-69 96-128 (249)
233 1igq_A Transcriptional repress 21.5 50 0.0017 22.9 2.1 11 83-93 32-42 (62)
234 1qyr_A KSGA, high level kasuga 21.4 72 0.0024 26.7 3.5 33 37-69 91-123 (252)
235 2lea_A Serine/arginine-rich sp 20.3 22 0.00074 26.8 0.0 30 85-114 5-34 (135)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=143.10 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++|||+|||+++++++|+++|++||+|.+|.|++|..+|+++ |||||+|.+.++|.+|+..|||..|+|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k------G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL------GYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccc------ccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999999999999999999999999988 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 91 l~ 92 (99)
T 4fxv_A 91 IK 92 (99)
T ss_dssp CE
T ss_pred EE
Confidence 73
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=1.6e-21 Score=149.74 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=67.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..++|||||||+.+++++|+++|++||.|.+|.|+.+.. .+| |||||+|.+.++|..|+..|||..|.|+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~k------g~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSK------GYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEE------EEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCC------ceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 357899999999999999999999999999999998853 356 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 76 ~ 76 (115)
T 4f25_A 76 F 76 (115)
T ss_dssp E
T ss_pred E
Confidence 3
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=140.25 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.+|||+|||+.+++++|+++|++||+|.+|.|+.|..+|++| |||||+|.+.++|+.|+..|||+.|.|+.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~r------G~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHL------GLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCcee------eEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 35689999999999999999999999999999999999999998 999999999999999999999999999997
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 79 ~ 79 (110)
T 3s8s_A 79 H 79 (110)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=3.1e-19 Score=127.53 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~------g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR------GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE------EEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcc------ceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 579999999999999999999999999999999998888888 9999999999999999999999999999874
No 5
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.5e-19 Score=132.60 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCc--ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFG--EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG--~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+|||||||+++++++|+++|++|| .|.+|.|+.+..+|+++ |||||+|.+.++|..|++.|||..|.|+.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~k------G~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK------GFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEE------EEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccC------cEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4699999999999999999999999 99999999999899998 999999999999999999999999999997
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 76 ~ 76 (90)
T 3p5t_L 76 V 76 (90)
T ss_dssp E
T ss_pred E
Confidence 4
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-20 Score=135.21 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=68.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh-cCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY-NNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L-Ng~~i~Grk 113 (222)
+.+|||+|||+.+++++|+++|++|| +|.+|+|++|..+|++| |||||+|.+.++|.+|++.| |+..|+|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~r------g~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSR------GFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCS------SEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcC------ceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 36899999999999999999999999 89999999999999998 99999999999999999988 457899998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 75 i~ 76 (91)
T 2lxi_A 75 VS 76 (91)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 7
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=4.6e-19 Score=127.17 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |+|||+|.+.++|..|+..|||..|+|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR------GFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEEC------SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccc------cEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456889999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 79 l~ 80 (85)
T 3mdf_A 79 IR 80 (85)
T ss_dssp CE
T ss_pred EE
Confidence 73
No 8
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-19 Score=128.68 Aligned_cols=75 Identities=12% Similarity=0.248 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK------GYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCC------SEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC------cEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 46789999999999999999999999999999999998888888 999999999999999999999999999986
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 78 ~ 78 (85)
T 1x4e_A 78 K 78 (85)
T ss_dssp C
T ss_pred e
Confidence 3
No 9
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=129.73 Aligned_cols=78 Identities=10% Similarity=0.239 Sum_probs=73.1
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeE--------EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR--------VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r--------v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
......+|||+|||+++++++|+++|++||.|.+ |.|+.+..+|+++ |||||+|.+.++|..|+..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~------G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK------GEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEE------EEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCee------eEEEEEECCHHHHHHHHHH
Confidence 4456789999999999999999999999999999 9999998889888 9999999999999999999
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|||..++|+.+.
T Consensus 83 l~g~~~~g~~l~ 94 (99)
T 2la6_A 83 FDGKEFSGNPIK 94 (99)
T ss_dssp HTTCBSSSSBCE
T ss_pred hCCCEeCCcEEE
Confidence 999999999873
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=6.7e-19 Score=126.83 Aligned_cols=75 Identities=13% Similarity=0.282 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.++.+..+|+++ |||||+|.+.++|..|+..|||..++|+.+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSK------GYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45689999999999999999999999999999999998888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 79 ~ 79 (87)
T 3bs9_A 79 R 79 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=2e-19 Score=134.86 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=70.7
Q ss_pred CccEEEEcCCCC------CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 35 KKGIIYLSKVPP------HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 35 ~~g~VYIsnLP~------~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
...+|||+|||+ .+++++|+++|++||+|.+|.|+.+..||++| |||||+|.+.++|..|+..|||+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~k------G~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTK------GFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEEC------SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccc------eEEEEEECCHHHHHHHHHHhCCcc
Confidence 356899999999 99999999999999999999999999999998 999999999999999999999999
Q ss_pred cCC-ccc
Q psy3854 109 IDC-RKR 114 (222)
Q Consensus 109 i~G-rk~ 114 (222)
|.| +.+
T Consensus 79 ~~g~r~l 85 (100)
T 3ns6_A 79 LDLKHRL 85 (100)
T ss_dssp SSSSCBC
T ss_pred cCCCeEE
Confidence 999 876
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=134.61 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcc--eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc----
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGE--VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ---- 108 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~--I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~---- 108 (222)
.-.+|||+|||+.+|+++|+++|++||. |.+|+|++|..+|++| |||||+|.+.++|..|++.|||++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~sr------G~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNR------GFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCS------SEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCc------eEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 4567999999999999999999999995 6799999999999998 999999999999999999999985
Q ss_pred cCCcccc
Q psy3854 109 IDCRKRS 115 (222)
Q Consensus 109 i~Grk~~ 115 (222)
|+||++.
T Consensus 82 i~Gr~i~ 88 (95)
T 2lkz_A 82 IDGKTIG 88 (95)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 8899863
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=127.09 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK------GYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCC------SEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCcee------eEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 46789999999999999999999999999999999998888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 78 ~ 78 (95)
T 2dnz_A 78 R 78 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.28 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=73.2
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.......|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ------GYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBC------SCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCC------cEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 44567899999999999999999999999999999999998888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 85 ~~l~ 88 (105)
T 1x5u_A 85 KPIR 88 (105)
T ss_dssp CBCE
T ss_pred eEEE
Confidence 9874
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=127.47 Aligned_cols=77 Identities=27% Similarity=0.388 Sum_probs=72.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSK------GVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCT------TCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc------cEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3456789999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 87 ~l~ 89 (94)
T 2e5h_A 87 VIK 89 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 16
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=4.2e-18 Score=129.79 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=72.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+++++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|++.|||..|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSK------CFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCC------CEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcC------cEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456789999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 111 ~l~ 113 (118)
T 2khc_A 111 RLK 113 (118)
T ss_dssp ECC
T ss_pred EEE
Confidence 874
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.2e-18 Score=128.53 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSK------GYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBC------SEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccc------eEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4689999999999999999999999999999999998888888 9999999999999999999999999999874
No 18
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=129.74 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=72.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK------GYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEE------EEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCcee------eEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 33456789999999999999999999999999999999999889888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 93 ~~l~ 96 (106)
T 1p27_B 93 QPIS 96 (106)
T ss_dssp SBCE
T ss_pred cEEE
Confidence 9874
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=128.57 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPK------GFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCC------SEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcC------eEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356789999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 80 l~ 81 (99)
T 1whw_A 80 LH 81 (99)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=129.91 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=72.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPR------GFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBC------SCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCC------eEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3456889999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 84 ~l~ 86 (103)
T 2dnm_A 84 ELR 86 (103)
T ss_dssp CCE
T ss_pred EEE
Confidence 874
No 21
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=127.08 Aligned_cols=75 Identities=16% Similarity=0.325 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCC-CCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPG-EKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgk-sKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.+.+|||+|||+.+++++|+++|++||.|.+|.|+.+..++. ++ |+|||+|.+.++|..|+..|||..|+|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK------GYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEEC------SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCC------cEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 567899999999999999999999999999999999877654 66 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 77 l~ 78 (88)
T 4a8x_A 77 IT 78 (88)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 22
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=7.4e-19 Score=126.27 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 37 GIIYLSKVPPHM------NVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 37 g~VYIsnLP~~m------~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.+|||+|||+.+ ++++|+++|++||+|.+|.|. ..+|+++ |||||+|.+.++|..|+..|||..|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~------g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTK------GYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCC------CEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEe------EEEEEEECCHHHHHHHHHHhcCcccC
Confidence 579999999999 679999999999999999987 3567888 99999999999999999999999999
Q ss_pred Cc-cc
Q psy3854 111 CR-KR 114 (222)
Q Consensus 111 Gr-k~ 114 (222)
|+ ++
T Consensus 74 g~~~l 78 (81)
T 2krb_A 74 KQHTF 78 (81)
T ss_dssp SSSCC
T ss_pred CceeE
Confidence 99 75
No 23
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=132.54 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||||||+++++++|+++|++||+|.+|.|+.+.. |++| |||||+|.+.++|..|+. |||..|+|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~r------G~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFK------GSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCC------CEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCc------cEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 3567899999999999999999999999999999999877 8888 999999999999999999 9999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 81 l~ 82 (103)
T 1s79_A 81 LL 82 (103)
T ss_dssp CE
T ss_pred EE
Confidence 73
No 24
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=6.4e-19 Score=124.16 Aligned_cols=70 Identities=17% Similarity=0.374 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.|||+|||+.+++++|+++|++||+|.+|.++.+..+|+++ |||||+|.+.++|+.|++ |||..|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHR------GFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSC------BEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcC------cEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 48999999999999999999999999999999998888888 999999999999999997 99999999986
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=130.11 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=73.0
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK------GFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEE------EEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCcee------eEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 44567889999999999999999999999999999999998888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 85 ~~l~ 88 (103)
T 2cq0_A 85 LILN 88 (103)
T ss_dssp EECE
T ss_pred cEEE
Confidence 9874
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=126.29 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=72.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR------GFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEE------EEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcc------cEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 86 ~l~ 88 (95)
T 2cqc_A 86 RIR 88 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=127.60 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=72.1
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecC-CCCCCCCCCCCCccEEEEEecchHHHHHHHHHh-cCCcc
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPK-KRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY-NNTQI 109 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d-~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L-Ng~~i 109 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+ ..+++++ |||||+|.+.++|..|+..| ||..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR------GFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSC------SEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcC------ceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3446688999999999999999999999999999999998 6778888 99999999999999999999 99999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.|+.+.
T Consensus 85 ~g~~l~ 90 (107)
T 2cph_A 85 YGRRLV 90 (107)
T ss_dssp SSCBCE
T ss_pred CCCEEE
Confidence 999874
No 28
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=128.45 Aligned_cols=77 Identities=17% Similarity=0.350 Sum_probs=72.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSR------GFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCC------SEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc------cEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456899999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 83 ~l~ 85 (102)
T 1x5s_A 83 QIR 85 (102)
T ss_dssp CCE
T ss_pred EEE
Confidence 874
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=126.09 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|++ |||..|.|+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR------GFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCC------SEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCC------ceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 456789999999999999999999999999999999998888888 999999999999999998 9999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 81 l~ 82 (99)
T 2dgs_A 81 VE 82 (99)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=127.20 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEE-EEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRV-YLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv-~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+|||+|||+.+++++|+++|++||.|.+| .|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK------GYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCC------SEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcC------eEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46789999999999999999999999999999 999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 78 l~ 79 (96)
T 1x5t_A 78 IT 79 (96)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=127.65 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCccee-EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVG-RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~-rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....+|||+|||+.+++++|+++|++||+|. +|.|+++..+|+++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPA------GYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEE------EEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcC------CEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 4568899999999999999999999999999 99999998889888 9999999999999999999999999999
Q ss_pred c
Q psy3854 113 K 113 (222)
Q Consensus 113 k 113 (222)
.
T Consensus 81 ~ 81 (99)
T 2div_A 81 T 81 (99)
T ss_dssp S
T ss_pred C
Confidence 8
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=2.3e-18 Score=128.73 Aligned_cols=78 Identities=10% Similarity=0.260 Sum_probs=71.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc--
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI-- 109 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i-- 109 (222)
......+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK------GCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCC------SEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcc------eEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 34456789999999999999999999999999999999998889888 9999999999999999999999987
Q ss_pred -CCcccc
Q psy3854 110 -DCRKRS 115 (222)
Q Consensus 110 -~Grk~~ 115 (222)
.|+++.
T Consensus 83 ~~g~~l~ 89 (106)
T 2dgp_A 83 GMNRPIQ 89 (106)
T ss_dssp TCSSCCE
T ss_pred CCCceEE
Confidence 788763
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=3.2e-18 Score=128.95 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=72.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK------GYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBC------SEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc------eEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3456789999999999999999999999999999999998889888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 97 ~l~ 99 (110)
T 1oo0_B 97 TIQ 99 (110)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=2.8e-18 Score=124.01 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=69.9
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+. +||..|.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR------GFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE------EEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccc------cEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 34467899999999999999999999999999999999998889888 999999999999999995 58888999
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
+.+
T Consensus 80 ~~i 82 (87)
T 3s7r_A 80 RVI 82 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 35
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=2.9e-18 Score=123.93 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+ .|||..|.|+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPK------GFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCC------EEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcc------eEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 35689999999999999999999999999999999998888888 99999999999999999 999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 78 ~ 78 (89)
T 3ucg_A 78 K 78 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=130.09 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=72.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
...+.+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK------GYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEE------EEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccc------eEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456789999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 97 ~l~ 99 (108)
T 2jrs_A 97 PMK 99 (108)
T ss_dssp CCE
T ss_pred EEE
Confidence 874
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=127.10 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPK------GLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEE------EEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEE------eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 456789999999999999999999999999999999988 78888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 88 l~ 89 (100)
T 2do4_A 88 IK 89 (100)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=128.84 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR------GFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCS------SEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcc------eEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356789999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 84 l~ 85 (102)
T 2cqb_A 84 IR 85 (102)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=4.3e-18 Score=129.22 Aligned_cols=77 Identities=13% Similarity=0.270 Sum_probs=72.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK------GYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcc------eEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999999999999999999998888888 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 86 ~l~ 88 (115)
T 2dgo_A 86 QIR 88 (115)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=6.6e-18 Score=126.02 Aligned_cols=74 Identities=8% Similarity=0.155 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC--
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC-- 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G-- 111 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSK------GCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEE------EEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcC------cEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 357889999999999999999999999999999999987 68887 999999999999999999999999988
Q ss_pred -ccc
Q psy3854 112 -RKR 114 (222)
Q Consensus 112 -rk~ 114 (222)
+.+
T Consensus 86 ~~~l 89 (105)
T 2dnh_A 86 SSSL 89 (105)
T ss_dssp SSCC
T ss_pred CccE
Confidence 776
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=124.97 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+|||+.+++++|+++|++||+|.+|.|+.+.. |+++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPK------SFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEE------EEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCc------eEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3567899999999999999999999999999999999876 7777 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 87 l~ 88 (95)
T 2ywk_A 87 IN 88 (95)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 42
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=138.08 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc--ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG--EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG--~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....|||||||+++++++|+++|++|| .|.+|.|+.|..+|++| |||||+|.+.++|..|+..|||..|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~sk------GfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSK------GYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEE------EEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457899999999999999999999999 99999999999999998 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 128 ~l~ 130 (156)
T 3n9u_C 128 KVD 130 (156)
T ss_dssp ECE
T ss_pred EeE
Confidence 973
No 43
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=122.01 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+.|||+|||+.+++++|+++|++||+|.+|.++++..+|+++ |+|||+|.+.++|..|+..|| ..++|+++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR------GFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCS------SEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcC------ceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 469999999999999999999999999999999998888888 999999999999999999999 999999863
No 44
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=126.34 Aligned_cols=75 Identities=16% Similarity=0.316 Sum_probs=69.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSR------GVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEE------EEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcc------eEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 3456889999999999999999999999999999999988 78888 9999999999999999999999999877
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
++
T Consensus 95 ~~ 96 (114)
T 1x5o_A 95 PG 96 (114)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=126.21 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=70.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+ +|+++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSK------GFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEE------EEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcC------EEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 346778999999999999999999999999999999988 67777 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 84 ~l~ 86 (103)
T 2d9p_A 84 PLY 86 (103)
T ss_dssp BCE
T ss_pred EEE
Confidence 874
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=126.87 Aligned_cols=77 Identities=14% Similarity=0.269 Sum_probs=72.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc------C
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN------N 106 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN------g 106 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|| |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSK------GCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBC------SEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc------cEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3456789999999999999999999999999999999998888888 999999999999999999999 9
Q ss_pred CccCCcccc
Q psy3854 107 TQIDCRKRS 115 (222)
Q Consensus 107 ~~i~Grk~~ 115 (222)
..|.|+.+.
T Consensus 86 ~~~~g~~l~ 94 (111)
T 1x4h_A 86 LKLDGRQLK 94 (111)
T ss_dssp EESSSCEEE
T ss_pred cEEcCEEEE
Confidence 999999874
No 47
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.1e-18 Score=126.98 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=69.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.+ |..|+..|||..++|+++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPK------GFGFVEMQEES-VSEAIAKLDNTDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCC------EEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcc------eEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence 479999999999999999999999999999999998888888 99999999999 9999999999999999974
No 48
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=133.40 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeE--EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC----
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR--VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT---- 107 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r--v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~---- 107 (222)
....+|||+|||+.+++++|+++|++||.|.. |+|+.|..+|++| |||||+|.+. +|..|+..|||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~r------G~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNR------GFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBC------SCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcc------eEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34568999999999999999999999999977 9999999899998 9999999999 999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
.|.|+.+.
T Consensus 94 ~~~gr~l~ 101 (131)
T 2m2b_A 94 TIDGKTIN 101 (131)
T ss_dssp CGGGCCCC
T ss_pred cCCCEEEE
Confidence 99999874
No 49
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=130.69 Aligned_cols=82 Identities=13% Similarity=0.349 Sum_probs=72.3
Q ss_pred cccCCccEEEEcCCCCCCCHHHHH---HHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLT---EFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr---~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
.+.....+|||+|||+.+++++|+ ++|++||+|.+|.|+++..+++++ +..|||||+|.+.++|..|+..|||.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ---GPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSS---CCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccC---CCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 355567889999999999999999 999999999999999987765443 22399999999999999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
.|.|+++.
T Consensus 87 ~~~gr~l~ 94 (111)
T 2cpi_A 87 VVDGRTLK 94 (111)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 99999874
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=5e-18 Score=129.07 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK------CFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEE------EEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcC------ccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 355789999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 97 l~ 98 (115)
T 2cpz_A 97 LK 98 (115)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=130.53 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..+.+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~------g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSR------GFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCC------CEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcc------cEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999999999999999999988 78888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 78 l~ 79 (116)
T 2fy1_A 78 IK 79 (116)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 52
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.5e-18 Score=127.07 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.+|||+|||+.+++++|+++|++||.|.++.++.+..+|+++ |||||+|.+.++|..|+..|||..|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT------GEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEe------eEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999999999999999988888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 88 ~ 88 (95)
T 2ek1_A 88 K 88 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=5.1e-18 Score=127.04 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSL------GTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcc------eEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999999999999988 78888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 100 l~ 101 (107)
T 3ulh_A 100 MN 101 (107)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=126.96 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCC---CCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKR---KPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~---tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...+|||+|||+.+++++|+++|++||+|.+|.|+.+.. +++++ |||||+|.+.++|..|+..|||..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM------GFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEE------EEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcc------cEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 457899999999999999999999999999999998865 55777 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 78 ~~l~ 81 (98)
T 2cpf_A 78 HKLE 81 (98)
T ss_dssp EECE
T ss_pred eEEE
Confidence 9874
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=126.10 Aligned_cols=74 Identities=11% Similarity=0.229 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhc-CcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc-cCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSR-FGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ-IDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~-fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~-i~Gr 112 (222)
...+|||+|||+.+++++|+++|++ ||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||.. |+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSK------GYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEE------EEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCcc------ceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 4578999999999999999999999 9999999999998 88888 999999999999999999999999 9999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 81 ~l~ 83 (104)
T 2dhg_A 81 PVR 83 (104)
T ss_dssp CCC
T ss_pred eEE
Confidence 874
No 56
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=6.6e-18 Score=134.49 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=72.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR------GFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSC------CEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccc------eEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3457899999999999999999999999999999999998889988 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 141 ~l~ 143 (158)
T 2kn4_A 141 ELR 143 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=127.43 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=70.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|+|+.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK------GYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEE------EEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccc------eEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 35689999999999999999999999999999999998888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 81 ~ 81 (104)
T 1p1t_A 81 R 81 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=8.1e-18 Score=129.56 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK------GYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBC------SCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 346789999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 94 l~ 95 (126)
T 3ex7_B 94 IS 95 (126)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 59
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=128.32 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCC------CHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 34 YKKGIIYLSKVPPHM------NVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m------~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
....+|||+|||+.+ ++++|+++|++||.|.+|.|+ ..+|+++ |||||+|.+.++|..|+..|||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~------G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTK------GYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSC------CEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCee------eEEEEEECCHHHHHHHHHHhCCc
Confidence 346789999999999 779999999999999999997 3568888 99999999999999999999999
Q ss_pred ccCCc-ccc
Q psy3854 108 QIDCR-KRS 115 (222)
Q Consensus 108 ~i~Gr-k~~ 115 (222)
.|+|+ ++.
T Consensus 85 ~~~g~~~l~ 93 (105)
T 2nlw_A 85 KLDKQHTFR 93 (105)
T ss_dssp ECSTTCEEE
T ss_pred ccCCCceEE
Confidence 99998 763
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-18 Score=127.16 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..+.+|||+|||+.+++++|+++|++||.|..+.++.+..+|+++ |||||+|.+.++|..|+..|||..|+|+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT------GEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEE------EEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCee------eEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 356789999999999999999999999999999999988888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 87 l~ 88 (98)
T 2cqp_A 87 VK 88 (98)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.2e-17 Score=121.52 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+ +|+++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~------g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSK------GCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEE------EEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcc------eEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35678999999999999999999999999999999984 57777 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 78 l~ 79 (92)
T 2dgv_A 78 ID 79 (92)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=125.24 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCC-CCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRK-PGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~t-gksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
..+.+|||+|||+.+++++|+++|++|| |.+|.|+.+..+ |+++ |||||+|.+.++|..|+ .|||..|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~------g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLK------GFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBC------SCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcC------eEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3567999999999999999999999999 999999999887 8888 99999999999999999 9999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 85 ~l~ 87 (104)
T 1wi8_A 85 RIR 87 (104)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=127.14 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=72.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCccee--------EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVG--------RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~--------rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
.....+|||+|||+.+++++|+++|++||.|. .|.|+.+..+|+++ |||||+|.+.++|..|+..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPK------GDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBC------SEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCee------eEEEEEECCHHHHHHHHHHc
Confidence 34678999999999999999999999999999 69999998889888 99999999999999999999
Q ss_pred cCCccCCcccc
Q psy3854 105 NNTQIDCRKRS 115 (222)
Q Consensus 105 Ng~~i~Grk~~ 115 (222)
||..|.|+.+.
T Consensus 86 ~g~~~~g~~l~ 96 (113)
T 2cpe_A 86 DGKDFQGSKLK 96 (113)
T ss_dssp TTCEETTEECE
T ss_pred CCCccCCCEEE
Confidence 99999999874
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-18 Score=128.54 Aligned_cols=75 Identities=12% Similarity=0.218 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+ .|||..|+|+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK------GIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCC------CCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccC------cEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 356789999999999999999999999999999999999888888 99999999999999999 99999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 96 l~ 97 (114)
T 2cq4_A 96 II 97 (114)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 65
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=124.68 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++|| |.+|.|+.+..+|+++ |||||+|.+.++|..|+ .|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFK------GFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEE------EEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccc------eEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3467899999999999999999999998 9999999999888888 99999999999999999 99999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 85 l~ 86 (103)
T 2dng_A 85 LR 86 (103)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 66
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.84 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=72.9
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|.+|+..|||..|+|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR------GFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCC------SEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcC------cEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44467889999999999999999999999999999999998888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 133 ~~l~ 136 (140)
T 2ku7_A 133 RTIR 136 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 67
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=122.99 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=69.3
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+... ++ |||||+|.+.++|..|+..|||..|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SK------GFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TC------CEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--Cc------EEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999999999999999999988642 55 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 83 ~~l~ 86 (103)
T 2cq3_A 83 RKIE 86 (103)
T ss_dssp EECE
T ss_pred EEEE
Confidence 9874
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=130.16 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=72.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|+.||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSR------GYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEE------EEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcc------eEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34456789999999999999999999999999999999998888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 112 ~~l~ 115 (139)
T 1u6f_A 112 KRLK 115 (139)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 9874
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=125.89 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=67.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCC-CCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKK-RKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~-~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
......+|||+|||+.+++++|+++|++|| |.+|.|+.+. .+|+++ |||||+|.+.++|..|+ .|||..|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~------g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLK------GFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCC------SCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccC------eEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 445678899999999999999999999999 9999999987 578888 99999999999999999 99999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 87 g~~l~ 91 (100)
T 2j76_E 87 NRRIR 91 (100)
T ss_dssp TBCCC
T ss_pred CeEEE
Confidence 99874
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=123.53 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=68.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+ ++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--ND------PYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SC------CEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CC------CEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 345688999999999999999999999999999999998543 45 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 84 ~l~ 86 (103)
T 2cqi_A 84 EVK 86 (103)
T ss_dssp EEE
T ss_pred eEE
Confidence 874
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.2e-17 Score=131.38 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~------G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR------GFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCC------CEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 118 l~ 119 (129)
T 2kxn_B 118 IR 119 (129)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 72
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=7.6e-18 Score=129.39 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=71.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+ .|||..|+|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPK------GYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCE------EEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc------cEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 34457899999999999999999999999999999999998888888 99999999999999999 899999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 105 ~~l~ 108 (124)
T 2jwn_A 105 RTIK 108 (124)
T ss_dssp EECE
T ss_pred eEEE
Confidence 9874
No 73
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=4.6e-18 Score=119.49 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+|||+|||+.+++++|+++|++||+|.+|.++.+..+|+++ |||||+|.+.++|..|+.. ||..|+|+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRR------GFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSC------CCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC------CEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 48999999999999999999999999999999998888888 9999999999999999985 99999999863
No 74
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-18 Score=124.39 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLT----EFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr----~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
....|||+|||+.+++++|+ ++|++||+|.+|.|+.+..+ + |||||+|.+.++|..|+..|||..|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---r------g~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---Q------LKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---T------CCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---C------eEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999999999999999 99999999999999988765 4 89999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 79 gr~l~ 83 (96)
T 2dgx_A 79 SKKIL 83 (96)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99874
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=126.93 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=72.0
Q ss_pred CCCCCCcccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHH
Q psy3854 23 KPKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAA 102 (222)
Q Consensus 23 k~k~~~~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~ 102 (222)
.|..+.+........+|||+|||+.+++++|+++|++||+|.+|.|+.+.. +++ |||||+|.+.++|..|+.
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~k------g~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSK------GFGFVTFENSADADRARE 87 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCT------TEEEEECCCSHHHHHHHH
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCc------eEEEEEECCHHHHHHHHH
Confidence 334455555667788999999999999999999999999999999998853 356 999999999999999999
Q ss_pred HhcCCccCCcccc
Q psy3854 103 QYNNTQIDCRKRS 115 (222)
Q Consensus 103 ~LNg~~i~Grk~~ 115 (222)
.|||..|+|+.+.
T Consensus 88 ~l~g~~~~g~~l~ 100 (109)
T 2err_A 88 KLHGTVVEGRKIE 100 (109)
T ss_dssp HHTTCEETTEECE
T ss_pred HcCCCEECCEEEE
Confidence 9999999999874
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=6.4e-17 Score=124.68 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=71.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+..|||..|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSL------GTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCC------SEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEe------eEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34566789999999999999999999999999999999988 78888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 104 ~~l~ 107 (124)
T 2kt5_A 104 RPMD 107 (124)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 9874
No 77
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.4e-18 Score=136.48 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=82.9
Q ss_pred ccEEEEcCC----CCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecc----hHH----HHHHHH-
Q psy3854 36 KGIIYLSKV----PPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLK----KKV----AKQVAA- 102 (222)
Q Consensus 36 ~g~VYIsnL----P~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~d----k~~----Ak~A~~- 102 (222)
++.|||+|| |+.+++..|+++|+.||+|.+|.++.|+.||+|+ |||||+|.| +.+ |..|+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~sl------GfgfVef~d~~g~~d~a~kAA~kAi~~ 75 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPL------HVYLIKYASSDGKINDAAKAAFSAVRK 75 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEE------EEEEEECC------CCHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcee------eEEEEEECCCCCCcchHHHHHHHHHHH
Confidence 478999999 9999999999999999999999999999999999 999999996 333 899999
Q ss_pred -HhcCCccCCcccccccccccccccCC-CcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3854 103 -QYNNTQIDCRKRSKHYDFIWNFKYLP-RFKWIHLNERLAYEKQAHRQKLRAEIAEA 157 (222)
Q Consensus 103 -~LNg~~i~Grk~~~~~~~lWnikyL~-~fkW~~L~e~~a~ek~~R~~rLr~e~~qa 157 (222)
.|||..|+|+++..-. -+ +.. ..|.+..-.....+.|+|+..+..|
T Consensus 76 ~~lng~~I~Gr~irV~l--------n~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (136)
T 2j8a_A 76 HESSGCFIMGFKFEVIL--------NKHSIL-NNIISKFVEINVKKLQKLQENLKKA 123 (136)
T ss_dssp TTTTCEEETTEEEEEEE--------CCTTHH-HHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcCCeecCcEEEEEE--------CcccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999985322 22 333 5555555555555556665444333
No 78
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=126.14 Aligned_cols=76 Identities=17% Similarity=0.363 Sum_probs=71.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..||+ .|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSR------GYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCC------SEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccc------eEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 3456889999999999999999999999999999999998888888 9999999999999999999999 89999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 87 ~l~ 89 (116)
T 2cqd_A 87 KAN 89 (116)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=9.6e-18 Score=127.14 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=64.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..+-|||+||++.+|+++|+++|++||+|.+++|+. +| |||||||.+.++|..|+..|||..++|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~k------GfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQ------GIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TT------TEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CC------cEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 467899999999999999999999999999999976 45 999999999999999999999999999998
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 74 ~ 74 (89)
T 2wbr_A 74 F 74 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=128.48 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=64.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC--CccC
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN--TQID 110 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg--~~i~ 110 (222)
.....+|||+|||+++++++|+++|++||+|.+|.|+++ | |||||+|.+.++|..|++.||+ ..|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------k------GfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------K------NQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------T------TEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------C------CEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 345788999999999999999999999999999999875 3 9999999999999999999874 7899
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 81 Gr~l~ 85 (105)
T 1sjq_A 81 GQPIY 85 (105)
T ss_dssp TEECC
T ss_pred CEEEE
Confidence 99874
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=2.3e-17 Score=131.82 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=73.1
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|.|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTAC------GFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999999999999999999999888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 109 ~~l~ 112 (156)
T 1h2v_Z 109 RIIR 112 (156)
T ss_dssp EECE
T ss_pred eEEE
Confidence 9874
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=124.59 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.++|..|+.. ||..|.|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSR------GFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEE------EEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcc------eEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 456789999999999999999999999999999999998888888 9999999999999999999 999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 87 l~ 88 (105)
T 2dh8_A 87 ID 88 (105)
T ss_dssp EB
T ss_pred EE
Confidence 74
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=126.16 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=71.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+.. ||..|+|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSR------GFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCC------SEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcC------ceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 3456889999999999999999999999999999999998888888 9999999999999999998 99999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 97 ~l~ 99 (116)
T 1x4b_A 97 VVE 99 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 84
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=1.7e-17 Score=126.32 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=68.1
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.......+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+..|| ..|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~k------g~afV~f~~~~~A~~Ai~~~~-~~l~ 92 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR------GFGFVTFMDQAGVDKVLAQSR-HELD 92 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCT------TCEEEEESSHHHHHHHHHSSC-EEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcC------cEEEEEECCHHHHHHHHHHCC-CcCC
Confidence 344567889999999999999999999999999999999998889888 999999999999999999875 9999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 93 g~~l~ 97 (109)
T 2rs2_A 93 SKTID 97 (109)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 99873
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=124.46 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+.. |+++ |||||+|.+.++|..|+..|||..|.|+.+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSR------GIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEE------EEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCee------eEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 457899999999999999999999999999999998874 7777 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 87 ~ 87 (114)
T 2do0_A 87 H 87 (114)
T ss_dssp E
T ss_pred E
Confidence 4
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=2.6e-17 Score=133.26 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=72.0
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
+.....+|||+|||+.+++++|+.+|++||+|..|.|+.+..+|+++ |||||+|.+.++|..|+..|||..|.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK------GYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEE------EEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEe------eEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33455679999999999999999999999999999999998889888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 142 ~~l~ 145 (165)
T 1rk8_A 142 QTIQ 145 (165)
T ss_dssp EECE
T ss_pred EEEE
Confidence 9874
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=123.32 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=69.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcc-eeEEEEe-cCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc--CCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGE-VGRVYLM-PKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN--NTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~-I~rv~L~-~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN--g~~i~ 110 (222)
...+|||+|||+.+++++|+++|++||. |.+|.|+ .+..+|+++ |||||+|.+.++|..|+..|| +..+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNR------GFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTC------CEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcC------cEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 4578999999999999999999999999 9999998 777788888 999999999999999999996 59999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 81 g~~l~ 85 (109)
T 2dis_A 81 GHQIA 85 (109)
T ss_dssp TBCCE
T ss_pred CCeEE
Confidence 99874
No 88
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=127.98 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=63.0
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc--cCC
Q psy3854 35 KKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ--IDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~--i~G 111 (222)
...+|||+|||+ .+++++|+++|++||+|.+|.|+++ | |||||+|.+.++|..|++.|||.+ |.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------I------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------S------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------C------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 456899999999 9999999999999999999999864 2 899999999999999999999765 999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 82 r~l~ 85 (102)
T 1x4d_A 82 KPVR 85 (102)
T ss_dssp EECE
T ss_pred cEEE
Confidence 9974
No 89
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=122.74 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeE-EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR-VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r-v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....+|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|+++ |||||+|.+.++|..|+.. ||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~------G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRST------GEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBC------SEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcc------eEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 35678999999999999999999999999997 888887 778888 9999999999999999998 99999999
Q ss_pred cccc
Q psy3854 113 KRSK 116 (222)
Q Consensus 113 k~~~ 116 (222)
.+..
T Consensus 85 ~i~v 88 (104)
T 1wg5_A 85 YIEI 88 (104)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 8753
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=128.84 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|..+.++.+..+|+++ |||||+|.+.++|..|+. |||..|+|+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~------G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT------GEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEE------EEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCC------eEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 456789999999999999999999999999997777777789888 999999999999999999 9999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 96 i~ 97 (124)
T 1wel_A 96 IQ 97 (124)
T ss_dssp BE
T ss_pred EE
Confidence 74
No 91
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=129.06 Aligned_cols=72 Identities=10% Similarity=0.235 Sum_probs=64.9
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLT----EFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr----~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
...+|||+|||+.+++++|+ ++|++||+|.+|.+.. ++++| |||||+|.+.++|..|+..|||..|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~r------G~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNS------GKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSC------CCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcC------CEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 35679999999999999876 7999999999998854 46777 99999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 99 gr~l~ 103 (127)
T 2a3j_A 99 GNPLV 103 (127)
T ss_dssp TSCCE
T ss_pred CCEEE
Confidence 99874
No 92
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=4e-17 Score=136.29 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||||||+++++++|+++|++||+|.+|.|++|..+|+++ |||||+|.+.++|..|+..|||..+.|+.+.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~------G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL------GYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcc------ccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 4689999999999999999999999999999999999999888 9999999999999999999999999999874
No 93
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.1e-17 Score=122.13 Aligned_cols=72 Identities=11% Similarity=0.314 Sum_probs=66.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+ +.++ |||||+|.+.++|..|+..|||..|+|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETR------GTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTT------TCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCC------cEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4568999999999999999999999999999999876 3345 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 78 ~ 78 (115)
T 3lqv_A 78 V 78 (115)
T ss_dssp E
T ss_pred E
Confidence 4
No 94
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.8e-17 Score=131.20 Aligned_cols=80 Identities=14% Similarity=0.257 Sum_probs=73.6
Q ss_pred ccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 30 NSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 30 ~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
........+|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++ |||||+|.+.++|..|+..|||..|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~------G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR------GFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCC------SCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3344567789999999999999999999999999999999998888888 9999999999999999999999999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.|+++.
T Consensus 115 ~g~~l~ 120 (135)
T 2lea_A 115 DGRELR 120 (135)
T ss_dssp SSSCCE
T ss_pred CCEEEE
Confidence 999874
No 95
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=120.48 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=66.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|..+ ++++ |||||+|.+.++|..|+..|||..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGP------PFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSS------CCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCC------cEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 345679999999999999999999999999999999664 3455 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 90 ~l~ 92 (109)
T 1x4a_A 90 RLR 92 (109)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 96
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=125.21 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=69.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcce-eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEV-GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I-~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.....+|||+|||+.+++++|+++|++||.| .+|.|+.+. +|+++ |||||+|.+.++|..|+.. ||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~------G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGL------GQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCS------SCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcc------eEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 3456789999999999999999999999999 999999988 78888 9999999999999999987 9999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 84 r~i~ 87 (114)
T 2cpy_A 84 REAF 87 (114)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 97
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=5.9e-17 Score=126.70 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
..+|||+|||+.+++++|+++|++||+|.+|.++++..+|+++ |+|||+|.+.++|..|+..|||..++|+++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~------g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSL------GYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcce------eEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 4689999999999999999999999999999999998889888 9999999999999999999999999999874
No 98
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=118.25 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++| .|.+|.|+.+ .+|+++ |||||+|.+.++|..|+. |||..|+|+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~------g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKT------GYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEE------EEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCc------eEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 356789999999999999999999999 9999999998 678888 999999999999999999 9999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 79 i~ 80 (91)
T 2dgw_A 79 IE 80 (91)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=3.9e-17 Score=140.21 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc--ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG--EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG--~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
...+|||+|||+.+++++|+++|++|| .|.+|.|+.|..+|++| |||||+|.+.++|.+|+..|||+.|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~sk------GfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK------GFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEE------EEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccc------eEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 566899999999999999999999999 99999999999899998 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 141 ~l~ 143 (229)
T 3q2s_C 141 NPV 143 (229)
T ss_dssp CCE
T ss_pred EeE
Confidence 873
No 100
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-17 Score=123.89 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=67.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
....|||+|||+.+++++|+++|++||.|.. .++.+..+|+++ |||||+|.+.++|..|++ |||..|.|+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~------g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNR------KFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTT------TEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcC------cEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 4678999999999999999999999999999 677777778888 999999999999999999 99999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 88 ~ 88 (101)
T 1fj7_A 88 K 88 (101)
T ss_dssp E
T ss_pred E
Confidence 4
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=123.18 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=67.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++|| |.+|.|+.+. +|+++ |||||+|.+.++|++|+ .||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~------G~afV~F~~~~~a~~Al-~~~~~~~~gr 82 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVT------GEADVEFATHEDAVAAM-AKDKANMQHR 82 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEE------EEEEEECSSSHHHHHHH-TTSSCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEe------eEEEEEECCHHHHHHHH-HhCCCeECCc
Confidence 34567899999999999999999999999 4599999987 78888 99999999999999999 5899999999
Q ss_pred cccc
Q psy3854 113 KRSK 116 (222)
Q Consensus 113 k~~~ 116 (222)
.+..
T Consensus 83 ~i~V 86 (102)
T 1wez_A 83 YVEL 86 (102)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 8743
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=119.76 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=68.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|..|+. ++..|.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSK------GFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEE------EEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCcc------ceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 3456789999999999999999999999999999999998889888 999999999999999998 57788998
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 84 ~l~ 86 (103)
T 2cqg_A 84 WCD 86 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 103
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=123.66 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcc---eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGE---VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~---I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
....+|||+|||+.+++++|+++|+.||. |.+|.|+.+.. |+++ |||||+|.+.++|..|+. |||..|+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~------G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRR------GDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTC------SEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEe------eEEEEEECCHHHHHHHHH-hCcceeC
Confidence 45778999999999999999999999998 89999999877 8888 999999999999999999 9999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 81 gr~i~ 85 (107)
T 2lmi_A 81 QRYVE 85 (107)
T ss_dssp SSCCC
T ss_pred CeEEE
Confidence 99874
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=124.17 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=62.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc--cCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ--IDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~--i~Gr 112 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|++ +| |+|||+|.+.++|..|+..|||.+ |+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~k------g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KK------RQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TT------TEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CC------CEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 456899999999999999999999999999999975 24 899999999999999999999987 7899
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
++
T Consensus 88 ~i 89 (100)
T 3r27_A 88 PA 89 (100)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.9e-17 Score=125.28 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=72.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.++++..+|+++ |+|||+|.+.++|..|+..|||..|+|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR------GYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE------EEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc------eEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 34456789999999999999999999999999999999998888888 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 157 ~~i~ 160 (166)
T 3md3_A 157 RPLR 160 (166)
T ss_dssp EECE
T ss_pred cEEE
Confidence 9874
No 106
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=6.4e-17 Score=127.20 Aligned_cols=75 Identities=9% Similarity=0.199 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+++++++|+++|++||+|.+|.|+++..+|+++ |||||+|.+.++|..|+..|||..++|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~------g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSY------GYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEEC------SEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccc------eEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 35789999999999999999999999999999999998888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 76 ~ 76 (168)
T 1b7f_A 76 K 76 (168)
T ss_dssp E
T ss_pred E
Confidence 4
No 107
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=123.39 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|++ ++ |||||+|.+.++|..|+..|||..|.|+.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GG------ITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SS------SCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CC------CEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 456899999999999999999999999999999864 34 899999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 77 ~ 77 (111)
T 1whx_A 77 Y 77 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 108
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.9e-17 Score=122.18 Aligned_cols=73 Identities=15% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+|||+.+++++|+++|++||.|.+|.|+.+. +|+++ |||||+|.+.++|..|+. ||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~------g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSK------GYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEE------EEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCcc------ceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 356789999999999999999999999999999999998 78888 999999999999999999 888888887
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 78 l~ 79 (102)
T 2xs2_A 78 LK 79 (102)
T ss_dssp CE
T ss_pred EE
Confidence 63
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=120.46 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=64.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+.|||+|||+.+++++|+++|++||+|.+|.|+.+ ++ |||||+|.+.++|..|+..|||..|.|+.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PP------GFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SS------SEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CC------CEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 47999999999999999999999999999999887 44 9999999999999999999999999999874
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=123.46 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=64.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.+..+..+|+++ |||||+|.+.++|..|+..|||..|.|+.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR------GQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSC------SEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccc------eEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45789999999999999999999999999544333332367777 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 98 ~ 98 (115)
T 2cpx_A 98 V 98 (115)
T ss_dssp E
T ss_pred E
Confidence 4
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=113.79 Aligned_cols=70 Identities=17% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh-cCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY-NNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L-Ng~~i~Gr 112 (222)
....+|||+|||+.+++++|+++|++||.|.+|.++++ + |||||+|.+.++|..|+..| ||..+.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------k------g~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------Q------QCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------G------TEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------C------CEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 35678999999999999999999999999999999863 3 89999999999999999999 99999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 78 ~l~ 80 (85)
T 2ytc_A 78 RLN 80 (85)
T ss_dssp ECC
T ss_pred EEE
Confidence 863
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.6e-16 Score=117.93 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.+. +++ |||||+|.+.++|..|+..|||..|+|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEK------GCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTT------TEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCC------CEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345789999999999999999999999999999997 234 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 93 l~ 94 (101)
T 2la4_A 93 LR 94 (101)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 113
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1e-16 Score=126.83 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.++++..+|+++ |+|||+|.+.++|.+|+..|||..|+|++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK------GYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEE------EEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcc------eEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 346889999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 166 l~ 167 (172)
T 2g4b_A 166 LL 167 (172)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 114
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=116.99 Aligned_cols=70 Identities=13% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC--C
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID--C 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~--G 111 (222)
....+|||+|||+.+++++|+++|++||.|.+|.+..+ + |||||+|.+.++|..|+..|||..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~------g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------D------SFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------S------CCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------C------CEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 34578999999999999999999999999999999764 3 89999999999999999999999999 8
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 83 ~~l~ 86 (97)
T 1why_A 83 RRLR 86 (97)
T ss_dssp CBCE
T ss_pred cEEE
Confidence 8763
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=117.33 Aligned_cols=71 Identities=14% Similarity=0.450 Sum_probs=65.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|.++ + |||||+|.+.++|..|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------k------g~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------K------GFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------T------TEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------C------CEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999999999754 3 8999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 80 ~l~ 82 (99)
T 2cpj_A 80 QLR 82 (99)
T ss_dssp CCE
T ss_pred eEE
Confidence 874
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=120.86 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=62.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc--cCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ--IDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~--i~Gr 112 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+++ | |||||+|.+.++|..|+..|||.. |.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------k------g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------K------RQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------T------TEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------C------CEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3468999999999999999999999999999999863 3 899999999999999999998765 8999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 82 ~l~ 84 (104)
T 1wex_A 82 QAF 84 (104)
T ss_dssp BCE
T ss_pred EEE
Confidence 874
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=114.92 Aligned_cols=68 Identities=10% Similarity=0.270 Sum_probs=63.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||+|.+|.|+ + |||||+|.+.++|..|+..|||..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------K------NYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------T------TEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------C------CEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 356789999999999999999999999999999997 3 89999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 72 l~ 73 (90)
T 2dnq_A 72 IN 73 (90)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 118
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=7.5e-17 Score=125.11 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=65.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......|||+|||+++++++|+++|++|| +|..|.|... +++ |||||+|.+.++|+.|++.|||..|.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~r------GfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFD------GTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSS------CCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCC------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999999999999999999999 9999998642 355 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 95 r~i~ 98 (111)
T 2jvr_A 95 SVIT 98 (111)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 119
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.9e-16 Score=125.65 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=67.3
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+.+ ++ |||||+|.+.++|..|+..|||..|+|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PP------GFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SC------SEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CC------cEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456789999999999999999999999999999999886 34 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 138 ~~l~ 141 (150)
T 2i2y_A 138 CRVR 141 (150)
T ss_dssp SCCE
T ss_pred eEEE
Confidence 9874
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=119.53 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=66.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+++ + |||||+|.+.++|..|+..|||..|+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~------g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------K------GYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------T------TEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------C------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456778999999999999999999999999999999876 3 899999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 89 ~~l~ 92 (109)
T 1x4g_A 89 HVVK 92 (109)
T ss_dssp EECE
T ss_pred cEEE
Confidence 9874
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=119.39 Aligned_cols=69 Identities=14% Similarity=0.334 Sum_probs=62.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc--CCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN--NTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN--g~~i~Gr 112 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+++ | |||||+|.+.++|..|+..|| +..|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------K------NQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------T------TEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------C------CEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 3468999999999999999999999999999999864 3 899999999999999999875 6779999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 82 ~l~ 84 (101)
T 2cq1_A 82 PIY 84 (101)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=5.4e-17 Score=119.18 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=66.0
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLT----EFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr----~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
...+|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++ |||||+|.+.++|..|+..|||..|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMR------GQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHT------TCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcC------cEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 45789999999999999999 9999999999999874 36666 99999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 78 g~~l~ 82 (97)
T 1nu4_A 78 DKPMR 82 (97)
T ss_dssp TEECE
T ss_pred CcEEE
Confidence 99874
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=8e-17 Score=124.37 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcc---eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGE---VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~---I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...+|||+|||+.+++++|+++|++||. |.+|.|+.+.. |+++ |||||+|.+.++|+.|+. |||..|+|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~------G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQS------GEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEE------EEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCC------eEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 5678999999999999999999999999 89999999877 8888 999999999999999999 99999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 88 r~i~ 91 (118)
T 2db1_A 88 RYIE 91 (118)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=124.94 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=63.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC--CccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN--TQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg--~~i~Gr 112 (222)
...+|||+|||+++++++|+++|++||.|.+|.|+++ | |||||+|.+.++|..|+..||+ ..|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------k------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------K------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------G------TEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------C------CEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 4568999999999999999999999999999999875 3 8999999999999999999985 689999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 98 ~l~ 100 (119)
T 2ad9_A 98 PIY 100 (119)
T ss_dssp CCE
T ss_pred EEE
Confidence 874
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=115.30 Aligned_cols=70 Identities=10% Similarity=0.188 Sum_probs=64.5
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.+++ +||||+|.+.++|..|+..|||..|.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------------~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------------DYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------------SEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------------CEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 344678899999999999999999999999999999962 699999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 72 ~~l~ 75 (92)
T 2dgt_A 72 KRMH 75 (92)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9874
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=115.74 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=63.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcC--cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRF--GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~f--G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
......+|||+|||+.+++++|+++|++| |.|.+|.+. + |||||+|.+.++|..|+..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~------g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------R------DYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------S------SEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------C------CeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34456789999999999999999999999 999999874 2 8999999999999999999999999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.|+++.
T Consensus 77 ~g~~l~ 82 (99)
T 2cpd_A 77 DGSPIE 82 (99)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 999874
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=115.46 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=63.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|. +.++. ++++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPR------RRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTT------TEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCC------cEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34567999999999999999999999999997 66664 3455 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 85 ~l~ 87 (97)
T 2e5j_A 85 TLR 87 (97)
T ss_dssp CCE
T ss_pred EEE
Confidence 874
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=117.14 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=64.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.| .++.+ .+++++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSK------GYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBC------SEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEe------eEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 356889999999999999999999999987 55555 567777 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 83 l~ 84 (101)
T 2fc9_A 83 IR 84 (101)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=123.43 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=62.1
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC--CccCC
Q psy3854 35 KKGIIYLSKVPPH-MNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN--TQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~-m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg--~~i~G 111 (222)
...+|||+|||++ +++++|+++|++||+|.+|.|++ +| |||||+|.+.++|..|+..||+ ..|.|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~k------g~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MK------SQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TT------TEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CC------CEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4668999999998 99999999999999999999974 34 9999999999999999999975 45999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 92 r~l~ 95 (112)
T 1x4f_A 92 RCVK 95 (112)
T ss_dssp SCCE
T ss_pred EEEE
Confidence 9874
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=7.5e-17 Score=129.20 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcc---eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGE---VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~---I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
....+|||+|||+.+++++|+++|++||. |.+|.|+.+.. |+++ |||||+|.+.++|++|+. |||..|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~sr------G~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQS------GEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEE------EEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCC------eEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 35678999999999999999999999999 89999999887 8888 999999999999999999 9999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 114 gr~i~ 118 (136)
T 2hgl_A 114 HRYIE 118 (136)
T ss_dssp SSEEE
T ss_pred CEEEE
Confidence 99874
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.2e-16 Score=116.92 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=64.0
Q ss_pred ccCCccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 32 KKYKKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
......+|||+|||+ .+++++|+++|++||.|.+|.|. + |||||+|.+.++|..|+..|||..++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~------g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------N------AFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------S------SEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------C------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 444678899999998 99999999999999999999993 3 89999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+++.
T Consensus 84 g~~l~ 88 (97)
T 2xnq_A 84 GKKLI 88 (97)
T ss_dssp TEECE
T ss_pred CEEEE
Confidence 99874
No 132
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=116.13 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=65.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEE-EEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRV-YLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv-~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....+|||+|||+.+++++|+++|++||.|.+| .|+.+..+ |.|||+|.+.++|..|+..|||..|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----------~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----------AVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----------EEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356789999999999999999999999999999 58777553 4599999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 83 ~l~ 85 (96)
T 2e44_A 83 TLK 85 (96)
T ss_dssp BCE
T ss_pred EEE
Confidence 874
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=115.38 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=64.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.|++ +||||+|.+.++|..|+..|||..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------------DYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------------SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34567899999999999999999999999999999973 6999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 72 ~l~ 74 (90)
T 2dnp_A 72 RIN 74 (90)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 134
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=122.01 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=67.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++| .|.+|.|+.+.. |+++ |||||+|.+.++|.+|+ .|||..|+||.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~------G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNN------GNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCC------SEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCC------eEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 35689999999999999999999999 899999999876 8888 99999999999999999 799999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 86 ~ 86 (109)
T 2dnn_A 86 E 86 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=3.7e-16 Score=122.16 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+|||+.+++++|+++|++||.|.+|.++++..+|+++ |+|||+|.+.++|..|+..|||..++|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR------GVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCcc------ceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 356789999999999999999999999999999999998888888 99999999999999999999999999987
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
+
T Consensus 160 ~ 160 (167)
T 1fxl_A 160 E 160 (167)
T ss_dssp S
T ss_pred c
Confidence 4
No 136
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.3e-16 Score=128.11 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+++++++|+++|++||+|.+|.|+++..+|+++ |||||+|.+.++|..|++.|||..|+|+.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHK------GFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCC------SEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccC------ceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 45789999999999999999999999999999999998888888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 101 ~ 101 (216)
T 2qfj_A 101 K 101 (216)
T ss_dssp E
T ss_pred E
Confidence 4
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.7e-16 Score=127.80 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|..+..+|+++ |||||+|.+.++|.+|+..|||..|+|+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~------g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHK------GYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcC------ceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 455799999999999999999999999999999999998888888 99999999999999999999999999999
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 197 i~ 198 (216)
T 2qfj_A 197 LR 198 (216)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 138
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.6e-18 Score=128.19 Aligned_cols=76 Identities=11% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeE--------EEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGR--------VYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~r--------v~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
....+|||+|||+.+++++|+++|++||.|.+ |.|+.+..+|+++ |||||+|.+.++|..|+..||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK------GEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 34678999999999999999999999999999 9999998888888 999999999999999999999
Q ss_pred CCccCCcccc
Q psy3854 106 NTQIDCRKRS 115 (222)
Q Consensus 106 g~~i~Grk~~ 115 (222)
|..|.|+++.
T Consensus 79 g~~~~g~~l~ 88 (116)
T 2lcw_A 79 GKEFSGNPIK 88 (116)
Confidence 9999999863
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=4e-16 Score=115.41 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=63.0
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....+|||+|||+ .+++++|+++|++||.|.+|.|. + |||||+|.+.++|..|+..|||..+.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------N------AFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------T------TEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------C------CEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 4567899999999 99999999999999999999994 3 8999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 74 ~l~ 76 (96)
T 2kvi_A 74 KLI 76 (96)
T ss_dssp TBC
T ss_pred EEE
Confidence 874
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=118.40 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=61.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
.....|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|..|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 35678999999999999999999999999999999875 699999999999999999999999999
No 141
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=119.84 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=60.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCC---CCCCCCCCCccEEEEEecchHHHHHHHHHh---cCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRK---PGEKKPAKQFTEGWIEFLKKKVAKQVAAQY---NNT 107 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~t---gksKkk~~~~g~GfVEF~dk~~Ak~A~~~L---Ng~ 107 (222)
...+|||+|||+.+++++|+++|++||+|. +.++.+..+ |+++ |||||+|.+.++|..|+..| ||.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~------G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPK------GYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTT------SEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcc------cEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 457899999999999999999999999999 888888776 6777 99999999999999999999 666
No 142
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=4e-16 Score=118.90 Aligned_cols=70 Identities=13% Similarity=0.296 Sum_probs=64.8
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.+|.|+ + |||||+|.+.++|..|+..|||..|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------k------g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------N------GFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------T------TEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------C------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999999999999999999999999999997 3 899999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 93 ~~l~ 96 (108)
T 2jvo_A 93 QPLE 96 (108)
T ss_dssp EECE
T ss_pred eEEE
Confidence 9874
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=3.2e-16 Score=126.36 Aligned_cols=76 Identities=8% Similarity=0.173 Sum_probs=70.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|+.+..+|+++ |||||+|.+.++|..|+.. ||..|.|+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR------GFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCcc------ceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 3456789999999999999999999999999999999998889888 9999999999999999976 99999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 83 ~l~ 85 (196)
T 1l3k_A 83 VVE 85 (196)
T ss_dssp ECE
T ss_pred Eee
Confidence 874
No 144
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=4.3e-16 Score=128.87 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|..+. +|+++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~k------G~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSL------GTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCS------CCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEe------eEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999999999999999999988 78888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 159 l~ 160 (177)
T 2f3j_A 159 MD 160 (177)
T ss_dssp CE
T ss_pred EE
Confidence 75
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=6.8e-16 Score=121.32 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=70.4
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC-
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC- 111 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G- 111 (222)
.....+|||+|||+.+++++|+++|++||.|.+|.++++..+|+++ |+|||+|.+.++|.+|+..|||..+.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR------GVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcc------eEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 3456789999999999999999999999999999999998888888 999999999999999999999999988
Q ss_pred -ccc
Q psy3854 112 -RKR 114 (222)
Q Consensus 112 -rk~ 114 (222)
+++
T Consensus 160 ~~~l 163 (168)
T 1b7f_A 160 SQPL 163 (168)
T ss_dssp SSCC
T ss_pred CeEE
Confidence 554
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=115.53 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=68.0
Q ss_pred cccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 31 SKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.......+|||+|||+.+++++|+++|+.|+ .|.++.+..+++++ |||||+|.+.++|..|+..|||..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSK------GFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEE------EEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcC------cEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3445678899999999999999999999884 67788887788888 99999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 81 g~~l~ 85 (102)
T 2fc8_A 81 GNKVT 85 (102)
T ss_dssp TEECE
T ss_pred CeEEE
Confidence 99874
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2e-16 Score=124.50 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++|||+|||+.+++++|+++|++||.|.+|.++.+..+|+++ |||||+|.+.++|.+|++ |||..|+|++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSR------GFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTS------EEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccc------eEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 356789999999999999999999999999999999998889888 999999999999999998 8999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 158 i~ 159 (167)
T 2cjk_A 158 IE 159 (167)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=117.20 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=64.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||.|..| ..+++++ |||||+|.+.++|..|+..|||..|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSK------GIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEE------EEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcc------eEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456889999999999999999999999999877 3346677 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 82 ~l~ 84 (96)
T 1fjc_A 82 SVS 84 (96)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1.2e-15 Score=115.14 Aligned_cols=67 Identities=9% Similarity=0.269 Sum_probs=62.7
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVPPH-MNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~-m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....|||+|||+. +++++|+++|++||.|.+|.| ++ |||||+|.+.++|..|+..|||..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HK------GYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ET------TEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eC------CEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4578999999999 999999999999999999999 23 89999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 92 l~ 93 (110)
T 1wf1_A 92 LD 93 (110)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 150
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.9e-16 Score=119.83 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=62.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
....|||+|||+.+++++|+++|++||+|..|.|+.+ |||||+|.+.++|..|+..|||+.|.|+++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 4578999999999999999999999999999999765 699999999999999999999999999985
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=5.6e-16 Score=122.25 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=65.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCC--CCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKP--GEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tg--ksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
...+|||+|||+.+++++|+++|++||+|.+|.|+.+..+| +++ |||||+|.+.++|..|+..|||..+.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~~~~~~~ 74 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSK------GCCFVTFYTRKAALEAQNALHNMKVLP 74 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEE------EEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcc------eEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence 35689999999999999999999999999999999998876 677 999999999999999999999988763
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=124.15 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=68.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcce----eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEV----GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I----~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
.....+|||+|||+.+++++|+++|++||.| .+|.|+.+ .+|+++ |||||+|.+.++|..|+.. ||..
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~------G~aFV~F~~~~~A~~Al~~-~~~~ 91 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPT------GDAFVLFACEEYAQNALRK-HKDL 91 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEE------EEEEECCSSHHHHHHHHTT-TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEe------eEEEEEECCHHHHHHHHHh-CCCe
Confidence 3457899999999999999999999999986 69999988 478888 9999999999999999986 9999
Q ss_pred cCCccccc
Q psy3854 109 IDCRKRSK 116 (222)
Q Consensus 109 i~Grk~~~ 116 (222)
|+||.+..
T Consensus 92 l~gR~i~V 99 (123)
T 2dha_A 92 LGKRYIEL 99 (123)
T ss_dssp SSSCEECC
T ss_pred eCCeEEEE
Confidence 99998643
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=3.9e-16 Score=116.63 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=62.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|++ +||||+|.+.++|..|+..|||..|.|+.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 457899999999999999999999999999999862 799999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 76 ~ 76 (103)
T 2dgu_A 76 E 76 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-16 Score=113.07 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
.....|||+|||+.+++++|+++|++||.|.+| +.+..+| .||||+|.+.++|..|+. |||..|+|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g---------~~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG---------VFAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC---------CEEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC---------cEEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 355689999999999999999999999999998 4444433 299999999999999999 9999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 74 l~ 75 (94)
T 2e5g_A 74 LR 75 (94)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.1e-16 Score=121.74 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
+|||+|||+.+++++|+++|++||+|.+|.|+++.. ++++ |+|||+|.+.++|..|+..|||..+.|+.+.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~------g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNV------NYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCE------EEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCC------CEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 699999999999999999999999999999998865 6677 9999999999999999999999999999874
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=6.1e-16 Score=124.89 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.+..+..+|+++ |||||+|.+.++|..|+..|||..|+|+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK------GYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE------EEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc------eEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 567899999999999999999999999999999999998888888 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 186 l~ 187 (198)
T 2yh0_A 186 LL 187 (198)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2.4e-16 Score=126.75 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=67.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+++++++|+++|++|| |.+|.|+.+.. |+++ |||||+|.+.++|+.|+ .||+..|+|+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~sr------GfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVT------GEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSS------CCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCc------eEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 34567899999999999999999999999 77999999876 8888 99999999999999999 8999999999
Q ss_pred cccc
Q psy3854 113 KRSK 116 (222)
Q Consensus 113 k~~~ 116 (222)
.+..
T Consensus 114 ~i~V 117 (139)
T 2hgn_A 114 YIEL 117 (139)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 8754
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=7.4e-17 Score=127.14 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEE--EecC---CCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVY--LMPK---KRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~--L~~d---~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
....+|||+|||+.+++++|+++|++||.|.+|. ++.+ ..+|+++ |||||+|.+.++|..|+..|||..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~------g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMK------GQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTE------EEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcc------cEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3457899999999999999999999999998751 1111 2357777 999999999999999999999999
Q ss_pred cCCcccc
Q psy3854 109 IDCRKRS 115 (222)
Q Consensus 109 i~Grk~~ 115 (222)
|.|+.+.
T Consensus 117 ~~g~~l~ 123 (143)
T 3egn_A 117 LFGKPMV 123 (143)
T ss_dssp ETTEECE
T ss_pred eCCcEEE
Confidence 9999874
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=8.5e-16 Score=129.32 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=64.8
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 35 KKGIIYLSKVP-PHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP-~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...+|||+||| +.+++++|+++|++||.|.+|.|+++. + |||||+|.+.++|..|+..|||+.+.|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~------g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----P------GAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----T------TCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----C------CEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 35689999999 799999999999999999999998752 3 99999999999999999999999999999
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 72 l~ 73 (205)
T 3tyt_A 72 MN 73 (205)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=1.1e-15 Score=120.24 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+++++++|+++|++||+|.+|.|+++..+|+++ |||||+|.+.++|..|+.. +..+.|+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~--~~~~~g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR------GFGFLSFEKPSSVDEVVKT--QHILDGKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCC------SCEEEEESSTHHHHHHHHS--CCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCcc------ceEEEEEccHHHHHHHHhc--ccccCCeEc
Confidence 45789999999999999999999999999999999998889888 9999999999999999995 566777765
No 161
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=121.75 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=57.5
Q ss_pred CccEEEE--cCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 35 KKGIIYL--SKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 35 ~~g~VYI--snLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
...+||| ||||+.+++++|+++|++||+|.+|.|.++ | |||||+|.+.++|..|++.|||+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------r------gfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------K------PYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------C------SCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------C------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567999 779999999999999999999999988642 3 8999999999999999999999987
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=1.1e-15 Score=121.25 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCccee--EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVG--RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~--rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
....+|||+|||+.+++++|+++|++| .|. +|.|+.|.. |+++ |||||+|.+.++|++|+. +||..|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Grsr------GfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKIT------GEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSC------SEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCc------eEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 356789999999999999999999999 576 999999877 8888 999999999999999998 47899999
Q ss_pred ccccc
Q psy3854 112 RKRSK 116 (222)
Q Consensus 112 rk~~~ 116 (222)
|.+..
T Consensus 111 R~I~V 115 (126)
T 2hgm_A 111 RYIEV 115 (126)
T ss_dssp BCCCC
T ss_pred EEEEE
Confidence 98743
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=1e-15 Score=143.02 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|..|.|+.+..+|+++ |||||+|.+.++|..|+..|||+.|+|+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k------G~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR------GYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCcc------ceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 345789999999999999999999999999999999998889888 99999999999999999999999999999
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 174 i~ 175 (437)
T 3pgw_S 174 VL 175 (437)
T ss_pred EE
Confidence 84
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.7e-15 Score=119.42 Aligned_cols=74 Identities=8% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC--
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC-- 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G-- 111 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+++.. |+++ |||||+|.+.++|.+|+..|||..+.+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 165 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSR------GCAFVTFTTRAMAQTAIKAMHQAQTMEGC 165 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEE------EEEEEEESSHHHHHHHHHHHTTSCCCTTC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEE------EEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3567899999999999999999999999999999998864 7777 999999999999999999999987764
Q ss_pred -ccc
Q psy3854 112 -RKR 114 (222)
Q Consensus 112 -rk~ 114 (222)
+++
T Consensus 166 ~~~l 169 (175)
T 3nmr_A 166 SSPM 169 (175)
T ss_dssp SSCC
T ss_pred CCCe
Confidence 665
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.3e-15 Score=109.46 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=62.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC----c-------ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF----G-------EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f----G-------~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
...+|||+|||+.+++++|+++|++| | .|.+|.+..+ + |||||+|.+.++|..|+ .
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------k------g~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------K------NFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------S------SEEEEEESSHHHHHHHG-G
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------C------cEEEEEcCCHHHHHHHH-h
Confidence 46789999999999999999999999 8 9999999754 3 89999999999999999 9
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|||..+.|+.+.
T Consensus 72 l~g~~~~g~~l~ 83 (87)
T 2hzc_A 72 FDGIIFQGQSLK 83 (87)
T ss_dssp GTTCEETTEECE
T ss_pred cCCCEECCeEEE
Confidence 999999999863
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.6e-15 Score=122.20 Aligned_cols=75 Identities=8% Similarity=0.273 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|||+.+++++|+++|++||.|.+|.|+.+..+|+++ |||||+|.+.++|.+|+.. ||..|+|+.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~------g~afV~F~~~~~A~~A~~~-~~~~~~G~~ 174 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR------GFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 174 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHC-SCCEETTEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcc------ceEEEEECCHHHHHHHHHh-CCcEECCEE
Confidence 345789999999999999999999999999999999998888888 9999999999999999986 899999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 175 i~ 176 (196)
T 1l3k_A 175 CE 176 (196)
T ss_dssp CE
T ss_pred EE
Confidence 73
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=9.8e-16 Score=127.81 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
...++|||+|||+.+++++|+++|++||.|.+|.|+.+.. .++ |||||+|.+.++|.+|+..|||..|+|++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~------g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSK------GYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEE------EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCc------eEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3567899999999999999999999999999999998853 355 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 173 i~ 174 (213)
T 4f02_A 173 VF 174 (213)
T ss_dssp CE
T ss_pred EE
Confidence 73
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.6e-16 Score=113.37 Aligned_cols=68 Identities=7% Similarity=0.222 Sum_probs=61.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcc-eeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC-CccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGE-VGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN-TQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~-I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg-~~i~Gr 112 (222)
....|||+|||+.+++++|+++|++||. |..+.+. ++ |||||+|.+.++|..|+..||| ..|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~------g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KS------GYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ET------TEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CC------CEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 4578999999999999999999999999 7777663 23 8999999999999999999999 999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 74 ~l~ 76 (93)
T 2cqh_A 74 IME 76 (93)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 169
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=8.6e-16 Score=111.95 Aligned_cols=68 Identities=10% Similarity=0.289 Sum_probs=62.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
....|||+|||+.+++++|+++|++| .|.+|.|. +++ |||||+|.+.++|..|+..|||..++|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNK------RTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGG------TEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCC------cEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999999 99999984 455 999999999999999999999999999997
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 71 ~ 71 (88)
T 1wg1_A 71 I 71 (88)
T ss_dssp E
T ss_pred E
Confidence 4
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=111.74 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=56.7
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID- 110 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~- 110 (222)
....+.+|||||||+++++++|+++|++||+|.+|.|+.+ +| |||||+|.+.++|. .|||..+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----sr------GfaFV~F~~~~~A~----~~~~~~~~~ 71 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FR------AFAFVTFADDKVAQ----SLCGEDLII 71 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CC------SEEEEEESCHHHHH----HHTTCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CC------CEEEEEECCHHHHH----HHcCCCccc
Confidence 3456789999999999999999999999999999999874 45 99999999999998 47887665
Q ss_pred -Cccc
Q psy3854 111 -CRKR 114 (222)
Q Consensus 111 -Grk~ 114 (222)
|+++
T Consensus 72 ~g~~v 76 (89)
T 3d2w_A 72 KGISV 76 (89)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 5554
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=5.7e-15 Score=113.03 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHHhhcCcceeEEEEecCCCC-CCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 34 YKKGIIYLSKVPP-----HMNVTQLTEFMSRFGEVGRVYLMPKKRK-PGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 34 ~~~g~VYIsnLP~-----~m~e~~Lr~lFs~fG~I~rv~L~~d~~t-gksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
..+.+|+|.|+.. +-++++|+++|++||+|.+|.|+.+..+ ++++ |+|||+|.+.++|.+|+..|||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~------G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEA------VRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTS------EEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCc------EEEEEEECCHHHHHHHHHHHCCC
Confidence 3467899999973 2368999999999999999999988654 5777 99999999999999999999999
Q ss_pred ccCCcccc
Q psy3854 108 QIDCRKRS 115 (222)
Q Consensus 108 ~i~Grk~~ 115 (222)
.++||.+.
T Consensus 80 ~~~Gr~i~ 87 (105)
T 2pe8_A 80 YFGGRVVK 87 (105)
T ss_dssp EETTEECE
T ss_pred EECCcEEE
Confidence 99999974
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=7.6e-15 Score=126.12 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC-CccC---
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN-TQID--- 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg-~~i~--- 110 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+.+ .+|+++ |||||+|.+.++|..|+..||| ..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~------g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRAT------GKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEE------EEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcC------cEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 3568999999999999999999999999999999998 578888 9999999999999999999954 4443
Q ss_pred Cccc
Q psy3854 111 CRKR 114 (222)
Q Consensus 111 Grk~ 114 (222)
|+++
T Consensus 168 ~r~i 171 (261)
T 3sde_A 168 PRPV 171 (261)
T ss_dssp CCBC
T ss_pred CceE
Confidence 6655
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=2.8e-15 Score=120.22 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=61.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccE-EEEEecchHHHHHHHHHhcCCccCC--
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTE-GWIEFLKKKVAKQVAAQYNNTQIDC-- 111 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~-GfVEF~dk~~Ak~A~~~LNg~~i~G-- 111 (222)
+--.|||+|||+.+++++|+++|++||+|.+|.+.... + || |||+|.+.++|..|+..|||..|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~------gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----N------QFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----T------EEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----C------CcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 34558999999999999999999999999999987532 3 77 9999999999999999999999987
Q ss_pred ccc
Q psy3854 112 RKR 114 (222)
Q Consensus 112 rk~ 114 (222)
+.+
T Consensus 96 ~~L 98 (130)
T 3zzy_A 96 CTL 98 (130)
T ss_dssp EEE
T ss_pred cEE
Confidence 544
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8e-15 Score=116.25 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=59.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccE-EEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTE-GWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~-GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
..-.|||+|||+.+++++|+++|++||.|.+|.|... . || |||+|.+.++|..|+..|||..|.|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~------Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------N------GIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------S------SEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------C------CCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 3345799999999999999999999999999999641 1 76 99999999999999999999999874
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.4e-15 Score=130.61 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCC-CHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 34 YKKGIIYLSKVPPHM-NVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m-~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
....+|||+|||+.+ ++++|+++|++||.|.+|.|+++. +|+++ |+|||+|.+.++|..|+..|||..|+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 254 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLK------GFAVLEYETAEMAEEAQQQADGLSLGGS 254 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEE------EEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcc------cEEEEEeCCHHHHHHHHHHhCCCccCCe
Confidence 456789999999996 999999999999999999999886 58777 9999999999999999999999999999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 255 ~l~ 257 (284)
T 3smz_A 255 HLR 257 (284)
T ss_dssp ECE
T ss_pred EEE
Confidence 873
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=5.4e-15 Score=122.91 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC--
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC-- 111 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G-- 111 (222)
.....|||+|||+.+++++|+++|++||+|.+|.|.... ++ |||||+|.+.++|..|+..|||..|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~r------gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g 113 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQ------FQALLQYADPVSAQHAKLSLDGQNIYNAC 113 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SC------EEEEEEESCHHHHHHHHHHSTTBCSSSSC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CC------CEEEEEECCHHHHHHHHHHhCCCEecCCC
Confidence 345569999999999999999999999999999996432 33 899999999999999999999999965
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 114 ~~L~ 117 (164)
T 1sjr_A 114 CTLR 117 (164)
T ss_dssp SCEE
T ss_pred cEEE
Confidence 7663
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=3.2e-15 Score=125.04 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=67.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....+|||+|||+.+++++|+++|++||+|.+|.|..+.. |+++ |||||+|.+.++|..|+..+|. .++|+
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~k------G~aFVeF~~~e~A~~A~~~~~~-~~~Gr 177 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFK------GSIFVVFDSIESAKKFVETPGQ-KYKET 177 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEE------EEEEEEESSHHHHHHHHHCTTC-EETTE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcc------cEEEEEECCHHHHHHHHHhCCC-eECCE
Confidence 33567899999999999999999999999999999988764 7777 9999999999999999987765 89999
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
.+.
T Consensus 178 ~l~ 180 (193)
T 2voo_A 178 DLL 180 (193)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=107.76 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|+ .+++++|+++|++||+|.+|.|. +++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPR------NCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTT------TEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCC------CEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 35678999996 99999999999999999999994 344 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 79 l~ 80 (97)
T 1x5p_A 79 LK 80 (97)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=5e-15 Score=124.61 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCcce--eEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEV--GRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~fG~I--~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
..+|||+|||+.+++++|+++|++||.| .+|.++++. ++++ |+|||+|.+.++|..|+..|||+.|.|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~------g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERS------SSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSS------EEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCc------eEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 4579999999999999999999999999 899998875 4455 99999999999999999999999999986
Q ss_pred c
Q psy3854 114 R 114 (222)
Q Consensus 114 ~ 114 (222)
.
T Consensus 195 ~ 195 (205)
T 3tyt_A 195 G 195 (205)
T ss_dssp S
T ss_pred C
Confidence 4
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.3e-14 Score=124.41 Aligned_cols=75 Identities=21% Similarity=0.442 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
...+|||+|||+.+++++|+++|++||.|.+|.++.+..+|+++ |||||+|.+.++|..|+..|||..|+|+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~------g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSK------GYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE------EEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccc------eEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45789999999999999999999999999999999998889888 999999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 168 ~ 168 (284)
T 3smz_A 168 Y 168 (284)
T ss_dssp E
T ss_pred E
Confidence 4
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1e-14 Score=116.05 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|..+ ..+|+++ |||||+|.+.++|..|+..|||..|+|
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSK------GIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCC------SEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCc------eEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33456789999999999999999999999998776 4457777 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 164 ~~i~ 167 (175)
T 1fje_B 164 RSVS 167 (175)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=1.7e-14 Score=123.89 Aligned_cols=72 Identities=15% Similarity=0.394 Sum_probs=66.0
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+++++++|+++|++||.|.+|.|.+ ++ |||||+|.+.++|..|+..|||..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~k------g~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DR------GFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TT------TEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CC------cEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 445678899999999999999999999999999999954 34 999999999999999999999999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+.+.
T Consensus 86 ~~l~ 89 (261)
T 3sde_A 86 RPLR 89 (261)
T ss_dssp EECE
T ss_pred ceeE
Confidence 9874
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.8e-14 Score=121.34 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=67.8
Q ss_pred cccCCccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 31 SKKYKKGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 31 ~k~~~~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
.......+|||+|||+ .+++++|+++|++||.|.+|.|+++. + |||||+|.+.++|..|++.|||..|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~------g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----K------ENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----S------CCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----C------CEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3445677899999999 99999999999999999999999875 3 8999999999999999999999999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.|+.+.
T Consensus 98 ~g~~l~ 103 (229)
T 2adc_A 98 HGKPIR 103 (229)
T ss_dssp SSSBCE
T ss_pred CCeEEE
Confidence 999874
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=110.67 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=58.4
Q ss_pred CccEEEEcCCCCCCCHHH----HHHHhhcC-cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQ----LTEFMSRF-GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~----Lr~lFs~f-G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
..+.|||+|||+.+++++ |+++|++| |+|.+| +| |+|||.|.+.++|.+|+..|||.+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---------G~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---------CSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---------TCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---------CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 344599999999999998 55899999 599999 33 8999999999999999999999999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.||++.
T Consensus 72 ~gr~i~ 77 (96)
T 2diu_A 72 FGNRII 77 (96)
T ss_dssp SSSCCE
T ss_pred CCceEE
Confidence 999974
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=118.44 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=64.8
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 36 KGIIYLSKVPP-HMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 36 ~g~VYIsnLP~-~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..+|||+|||+ .+++++|+++|++||.|.+|.|+.+. + |||||+|.+.++|..|+..|||..+.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~------g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----K------ENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----S------SCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----C------CEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 46899999999 99999999999999999999998875 3 899999999999999999999999999987
Q ss_pred c
Q psy3854 115 S 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 72 ~ 72 (198)
T 1qm9_A 72 R 72 (198)
T ss_dssp E
T ss_pred E
Confidence 4
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=1.2e-14 Score=125.15 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=68.8
Q ss_pred cCCccEEEEcCCCCC-CCHHHHHHHhhcCcceeEEEEecCCC-CCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 33 KYKKGIIYLSKVPPH-MNVTQLTEFMSRFGEVGRVYLMPKKR-KPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~-m~e~~Lr~lFs~fG~I~rv~L~~d~~-tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
.....+|||+|||+. +++++|+++|++||.|.+|.|+++.. +|+++ |||||+|.+.++|..|+ .|||..|+
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~------g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNN------CCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCC------EEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCc------eEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 345688999999999 99999999999999999999998876 58888 99999999999999999 99999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 280 g~~i~ 284 (292)
T 2ghp_A 280 NREIS 284 (292)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 99874
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=2.5e-14 Score=122.59 Aligned_cols=72 Identities=11% Similarity=0.219 Sum_probs=66.4
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC
Q psy3854 35 KKGIIYLSKVPPHMNVTQLT----EFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr----~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~ 110 (222)
...+|||+|||+.+++++|+ ++|++||.|.+|.|+. +|++| |||||+|.+.++|..|+..|||..|.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMR------GQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcc------eEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 46789999999999999977 9999999999999986 47777 99999999999999999999999999
Q ss_pred Ccccc
Q psy3854 111 CRKRS 115 (222)
Q Consensus 111 Grk~~ 115 (222)
|+.+.
T Consensus 79 g~~l~ 83 (282)
T 3pgw_A 79 DKPMR 83 (282)
T ss_pred CcEEE
Confidence 99874
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=3.5e-14 Score=122.28 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred cccccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 29 ENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 29 ~~~k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
..+......+|||+|||+.+++++|+++|++||+|.+|.|+++..+ ++ |||||+|.+.++|..|+ .|||..
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~------g~afV~f~~~~~A~~A~-~~~~~~ 104 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NF------RFARIEFARYDGALAAI-TKTHKV 104 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SS------EEEEEEESSHHHHHHHH-TTTTCE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--Cc------EEEEEEECCHHHHHHHH-HhCCcE
Confidence 3345667889999999999999999999999999999999998653 34 99999999999999999 599999
Q ss_pred cCCcccc
Q psy3854 109 IDCRKRS 115 (222)
Q Consensus 109 i~Grk~~ 115 (222)
|+|+.+.
T Consensus 105 ~~g~~i~ 111 (292)
T 2ghp_A 105 VGQNEII 111 (292)
T ss_dssp ETTEECE
T ss_pred eCCcEEE
Confidence 9999875
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=5.2e-15 Score=117.76 Aligned_cols=76 Identities=9% Similarity=0.155 Sum_probs=66.9
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCC
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDC 111 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~G 111 (222)
......+|||+|||+.+++++|+++|++||.|.. .++.+..+|+++ |||||+|.+.++|..|+ .|||..|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~------g~afV~f~~~~~a~~A~-~l~g~~~~g 80 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNR------KFGYVDFESAEDLEKAL-ELTGLKVFG 80 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTT------TEEEEEESSHHHHHHHH-HGGGEEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccc------cEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 4456789999999999999999999999999987 344555667777 99999999999999999 599999999
Q ss_pred cccc
Q psy3854 112 RKRS 115 (222)
Q Consensus 112 rk~~ 115 (222)
+++.
T Consensus 81 ~~l~ 84 (175)
T 1fje_B 81 NEIK 84 (175)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=6.7e-14 Score=113.86 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-Cc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID-CR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~-Gr 112 (222)
...+|||+|||+.+++++|+++|++|| .|.+|.|+++. + |+|||+|.+.++|..|+..|||..|+ |+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~------g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----R------KMALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----S------SCEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----C------cEEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 367899999999999999999999999 99999998753 3 89999999999999999999999999 88
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 188 ~l~ 190 (198)
T 1qm9_A 188 HLR 190 (198)
T ss_dssp SCC
T ss_pred eEE
Confidence 874
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=3.9e-14 Score=108.24 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=63.9
Q ss_pred ccEEEEcCC--CCCCCH--------HHHHHHhhcCcceeEEEEecCCCC--CCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 36 KGIIYLSKV--PPHMNV--------TQLTEFMSRFGEVGRVYLMPKKRK--PGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 36 ~g~VYIsnL--P~~m~e--------~~Lr~lFs~fG~I~rv~L~~d~~t--gksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
+.+|.|.|+ |..+.+ ++|+++|++||+|.+|+|+.+..+ ++++ |+|||+|.+.++|.+|+..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~------G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGC------GKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTT------TEEEEEESSHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCc------EEEEEEECCHHHHHHHHHH
Confidence 567899998 555543 699999999999999999887654 3455 9999999999999999999
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|||+.++||.+.
T Consensus 79 lnG~~f~GR~i~ 90 (105)
T 3v4m_A 79 LTGRKFANRVVV 90 (105)
T ss_dssp HTTCEETTEECE
T ss_pred hCCCEeCCCEEE
Confidence 999999999984
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=6e-14 Score=109.27 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=61.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
....+|||+|+ .+++++|+++|++||+|.+|.|. +++ |||||+|.+.++|..|+..|||..|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~k------g~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPR------NCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTT------TEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCC------CEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45678999995 69999999999999999999995 345 99999999999999999999999999998
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 103 l~ 104 (121)
T 2bz2_A 103 LK 104 (121)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 193
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=102.90 Aligned_cols=65 Identities=15% Similarity=0.347 Sum_probs=55.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc--CCc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI--DCR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i--~Gr 112 (222)
...+|||+|||+.+++++|+++|++||+|.+|.|+.+ ++ |||||+|.+.++|+. ||+..+ .|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~------g~afV~f~~~~~a~~----~~~~~~~~~g~ 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FR------AFAFVTFADDQIAQS----LCGEDLIIKGI 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CC------SCCEEECSCHHHHHH----TTTCEEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CC------CEEEEEECCHHHHHH----HhcCCceeCCE
Confidence 4678999999999999999999999999999999865 44 999999999999974 566655 666
Q ss_pred cc
Q psy3854 113 KR 114 (222)
Q Consensus 113 k~ 114 (222)
++
T Consensus 69 ~l 70 (88)
T 1wf0_A 69 SV 70 (88)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=6.4e-14 Score=120.07 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=64.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-Ccc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID-CRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~-Grk 113 (222)
...+|||+|||+.+++++|+++|++||.|.+|.|+++. + |||||+|.+.++|..|+..|||..|+ |+.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~------g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----H------DIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----C------cEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 45679999999999999999999999999999998654 2 89999999999999999999999999 887
Q ss_pred cc
Q psy3854 114 RS 115 (222)
Q Consensus 114 ~~ 115 (222)
+.
T Consensus 275 l~ 276 (282)
T 3pgw_A 275 MK 276 (282)
T ss_pred EE
Confidence 63
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=1.8e-13 Score=115.22 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=64.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccC-Cc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQID-CR 112 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~-Gr 112 (222)
...+|||+|||+.+++++|+++|++|| .|.+|.|+++. + |+|||+|.+.++|..|+..|||..|+ |+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~------g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 218 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----R------KMALIQMGSVEEAVQALIDLHNHDLGENH 218 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----T------TCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----C------cEEEEEECCHHHHHHHHHHHCCCccCCCC
Confidence 357899999999999999999999999 99999998742 3 89999999999999999999999999 88
Q ss_pred ccc
Q psy3854 113 KRS 115 (222)
Q Consensus 113 k~~ 115 (222)
++.
T Consensus 219 ~l~ 221 (229)
T 2adc_A 219 HLR 221 (229)
T ss_dssp BCE
T ss_pred eEE
Confidence 874
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=2.5e-14 Score=108.96 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCc
Q psy3854 41 LSKVPPHMNVTQLTEFM------------SRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 41 IsnLP~~m~e~~Lr~lF------------s~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~ 108 (222)
+.+||+.+++++|+++| ++||+|.+|.|+++.. ++++ |||||+|.+.++|.+|+..|||+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~------G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLV------GNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSE------EEEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCcc------EEEEEEECCHHHHHHHHHHHCCCE
Confidence 56788888888888777 9999999999988754 6777 999999999999999999999999
Q ss_pred cCCcccc
Q psy3854 109 IDCRKRS 115 (222)
Q Consensus 109 i~Grk~~ 115 (222)
++||.+.
T Consensus 93 ~~Gr~i~ 99 (104)
T 1jmt_A 93 FNGQPIH 99 (104)
T ss_dssp ETTEECC
T ss_pred ECCEEEE
Confidence 9999874
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=1e-13 Score=108.61 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=64.6
Q ss_pred CccEEEEcCCCC--CC---CHHHHHHHhhcCcceeEEEEecCCC----CCCCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 35 KKGIIYLSKVPP--HM---NVTQLTEFMSRFGEVGRVYLMPKKR----KPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 35 ~~g~VYIsnLP~--~m---~e~~Lr~lFs~fG~I~rv~L~~d~~----tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
.+.+|+|.|+-. .+ -+++|++.|++||+|.+|+|..+.. +++++ |+|||+|.+.++|.+|+..||
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~------G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEII------VKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEE------EEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcce------EEEEEEECCHHHHHHHHHHHC
Confidence 567899999842 22 2579999999999999999998754 35666 999999999999999999999
Q ss_pred CCccCCcccc
Q psy3854 106 NTQIDCRKRS 115 (222)
Q Consensus 106 g~~i~Grk~~ 115 (222)
|+.++||.+.
T Consensus 93 Gr~f~GR~i~ 102 (118)
T 3ue2_A 93 GRWFAGRKVV 102 (118)
T ss_dssp TCEETTEECE
T ss_pred CCEECCcEEE
Confidence 9999999974
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=1.7e-13 Score=108.17 Aligned_cols=68 Identities=15% Similarity=0.276 Sum_probs=60.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC----c-------ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF----G-------EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f----G-------~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
...+|||+|||+.+++++|+++|++| | .|.++.+.+ ++ |||||+|.+.++|..|+ .
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~------g~afV~f~~~~~A~~A~-~ 69 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DK------NFAFLEFRSVDETTQAM-A 69 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TT------TEEEEEESSHHHHHHHG-G
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CC------CEEEEEeCCHHHHHHHH-H
Confidence 45789999999999999999999999 5 677777643 34 99999999999999999 9
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|||..|.|+++.
T Consensus 70 ~~~~~~~g~~i~ 81 (172)
T 2g4b_A 70 FDGIIFQGQSLK 81 (172)
T ss_dssp GTTCEETTEECE
T ss_pred hCCcEecCceee
Confidence 999999999874
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.7e-13 Score=102.49 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccCCccEEEEcCCCCCCC-----------HHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMN-----------VTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQV 100 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~-----------e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A 100 (222)
+.....+|+|.||....+ +++|+++|++||+|.+|.| ++.. ++ |||||+|.+.++|..|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~------G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PD------GVASVSFRDPEEADYC 80 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TT------CEEEEECSCHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CC------EEEEEEECCHHHHHHH
Confidence 444677899999944432 5799999999999999966 5532 45 9999999999999999
Q ss_pred HHHhcCCccCCcccc
Q psy3854 101 AAQYNNTQIDCRKRS 115 (222)
Q Consensus 101 ~~~LNg~~i~Grk~~ 115 (222)
+..|||..|+|+++.
T Consensus 81 i~~lng~~~~gr~l~ 95 (112)
T 2dit_A 81 IQTLDGRWFGGRQIT 95 (112)
T ss_dssp HHHSTTCEETTEECE
T ss_pred HHHcCCCEECCcEEE
Confidence 999999999999974
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=1.5e-13 Score=120.13 Aligned_cols=64 Identities=17% Similarity=0.349 Sum_probs=59.4
Q ss_pred CCccEEEEcCCCCCC---------CHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 34 YKKGIIYLSKVPPHM---------NVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m---------~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
....+|||||||+.+ ++++|+++|++||+|.+|.|++. | |||||+|.+.++|+.|++.|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------k------G~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------K------NCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------G------TEEEEEESSHHHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------C------CEEEEEeCCHHHHHHHHHHh
Confidence 356789999999999 79999999999999999999863 4 99999999999999999999
Q ss_pred cCCcc
Q psy3854 105 NNTQI 109 (222)
Q Consensus 105 Ng~~i 109 (222)
||+.|
T Consensus 200 ~g~~l 204 (240)
T 3u1l_A 200 SNQTL 204 (240)
T ss_dssp TTCCC
T ss_pred CCCEE
Confidence 99999
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=3.4e-13 Score=108.72 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=58.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCc-----------ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFG-----------EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ 103 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG-----------~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~ 103 (222)
...+|||+|||+++++++|+++|++|| .|.++.+ ++++ |||||+|.+.++|..|+ .
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~------g~afV~F~~~~~A~~Al-~ 69 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDK------NFAFLEFRSVDETTQAM-A 69 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTT------TEEEEEESCSHHHHHHG-G
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCC------CEEEEEeCCHHHHHHHH-H
Confidence 357899999999999999999999996 4555544 4455 99999999999999999 8
Q ss_pred hcCCccCCcccc
Q psy3854 104 YNNTQIDCRKRS 115 (222)
Q Consensus 104 LNg~~i~Grk~~ 115 (222)
|||..|.|+.+.
T Consensus 70 l~g~~~~g~~i~ 81 (198)
T 2yh0_A 70 FDGIIFQGQSLK 81 (198)
T ss_dssp GTTEEETTEEEE
T ss_pred hcCCEEcCceEE
Confidence 999999999874
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=5.2e-13 Score=122.17 Aligned_cols=64 Identities=14% Similarity=0.292 Sum_probs=57.6
Q ss_pred CCccEEEEcC--CCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 34 YKKGIIYLSK--VPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 34 ~~~g~VYIsn--LP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
..+.+||||| |++.+++++|+++|++||+|.+|.+.+ +| |||||+|.+.++|+.|++.|||+.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~k------gfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NK------PYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TC------SEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CC------CEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3456899999 589999999999999999999998754 34 9999999999999999999999988
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.1e-11 Score=94.92 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=59.4
Q ss_pred CccEEEEcCCCCCCC----------HHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 35 KKGIIYLSKVPPHMN----------VTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~----------e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
.+.+|.|.|+=.... .++|++.|++||.|.+|.|.++. ++ |+|||+|.+.++|.+|+..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~------G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQ------GNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TT------CCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----Cc------EEEEEEECCHHHHHHHHHHh
Confidence 355788888644332 34889999999999999996653 24 99999999999999999999
Q ss_pred cCCccCCcccc
Q psy3854 105 NNTQIDCRKRS 115 (222)
Q Consensus 105 Ng~~i~Grk~~ 115 (222)
||+.++||.+.
T Consensus 76 nG~~f~GR~i~ 86 (114)
T 3s6e_A 76 HGRWFAGKMIT 86 (114)
T ss_dssp TTCEETTEECE
T ss_pred CCCEECCEEEE
Confidence 99999999984
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=92.94 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 45 PPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 45 P~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
++.+++++|+++|++||+|.+|.|+ +++| |||||+|.+.++|..|+..++| +.|+++
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~r------GfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKP------GTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSS------SEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCC------CEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4789999999999999999999997 3555 9999999999999999999776 467765
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6e-11 Score=94.11 Aligned_cols=67 Identities=22% Similarity=0.201 Sum_probs=60.2
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecc-hHHHHHHHHHhc--CCccC
Q psy3854 35 KKGIIYLSKVPPH-MNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLK-KKVAKQVAAQYN--NTQID 110 (222)
Q Consensus 35 ~~g~VYIsnLP~~-m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~d-k~~Ak~A~~~LN--g~~i~ 110 (222)
...+|||+|||+. ++.++|+++|++||+|..|.+++++ .+|||+|.+ ..+|..|+..|| |..|.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4578999999999 9999999999999999999998875 469999999 799999999996 67788
Q ss_pred Ccc
Q psy3854 111 CRK 113 (222)
Q Consensus 111 Grk 113 (222)
|..
T Consensus 85 g~~ 87 (121)
T 1owx_A 85 NKE 87 (121)
T ss_dssp SSS
T ss_pred CcE
Confidence 854
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=4.8e-10 Score=93.75 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=54.8
Q ss_pred CCHHHHHHHhhcCcceeEEEEecCC----CCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 48 MNVTQLTEFMSRFGEVGRVYLMPKK----RKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 48 m~e~~Lr~lFs~fG~I~rv~L~~d~----~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
-.+++|++.|++||+|.+|.|..+. .+++++ |+|||+|.+.++|.+|+..|||+.++||.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~------G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEII------VKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEE------EEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCce------eEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 3467999999999999999998443 345777 9999999999999999999999999999984
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=3.5e-10 Score=85.88 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=56.4
Q ss_pred CccEEEEcCCC----CCCCH----HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcC
Q psy3854 35 KKGIIYLSKVP----PHMNV----TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 35 ~~g~VYIsnLP----~~m~e----~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg 106 (222)
.-++|.|+..| ..+-+ .+|.+.|++||+|..|+++.| .|||+|.+.++|.+|+. |||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------------~~fVtF~d~~sAlaAi~-mnG 70 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------------KMWVTFLEGSSALNVLS-LNG 70 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------------SEEEEESSHHHHHHGGG-GTT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------------CEEEEECChHHHHHHHh-cCC
Confidence 35788888877 24444 689999999999999999874 39999999999999998 999
Q ss_pred CccCCcccc
Q psy3854 107 TQIDCRKRS 115 (222)
Q Consensus 107 ~~i~Grk~~ 115 (222)
..++||.+.
T Consensus 71 ~~v~Gr~Lk 79 (91)
T 2dnr_A 71 KELLNRTIT 79 (91)
T ss_dssp CEETTEEEE
T ss_pred eEeCCeEEE
Confidence 999999974
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.5e-09 Score=81.78 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred CccEEEEcCCCCC-----CCH----HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 35 KKGIIYLSKVPPH-----MNV----TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 35 ~~g~VYIsnLP~~-----m~e----~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
.-++|.|+.+|+. +-+ .+|.+.|++||+|..|+++.| -|||+|.+.++|.+|+. ||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------------~~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------------QMLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------------EEEEECSCSHHHHHHHH-GG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------------cEEEEEcChHHHHHHHh-cC
Confidence 4578999998853 333 579999999999999999875 39999999999999998 99
Q ss_pred CCccCCcccc
Q psy3854 106 NTQIDCRKRS 115 (222)
Q Consensus 106 g~~i~Grk~~ 115 (222)
|+.|+||.+.
T Consensus 79 G~~v~Gr~L~ 88 (95)
T 1ufw_A 79 GMKVKGRAVK 88 (95)
T ss_dssp GSEETTEEEE
T ss_pred CeeeCCeEEE
Confidence 9999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=2e-07 Score=73.46 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=64.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcC-----cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRF-----GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~f-----G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
...+|=|=+||..+++..||.+..+| |.|..|.|.||. +-+.|||.|...|-+|.-.|||..|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------------~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------------NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------------TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------------CceEEEEccchhhHHHHhhcCCeee
Confidence 36788889999999999999999999 999999999985 4599999999999999999999999
Q ss_pred CCcccc
Q psy3854 110 DCRKRS 115 (222)
Q Consensus 110 ~Grk~~ 115 (222)
.||++.
T Consensus 88 ~gr~Lr 93 (117)
T 2l9w_A 88 QGKVIR 93 (117)
T ss_dssp TTEEEE
T ss_pred cCeEEE
Confidence 999984
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.57 E-value=0.00033 Score=52.76 Aligned_cols=74 Identities=12% Similarity=0.231 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
..|-|.+|||.||++++.+.++.++++...+.++-+.+. +...++-+||.|.+.+++..-.+.+||..+-+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~----~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL----YPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS----TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC----CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 357899999999999999999999999988887755432 23557889999999999999999999998876654
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.53 E-value=0.00012 Score=56.44 Aligned_cols=64 Identities=11% Similarity=0.228 Sum_probs=50.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc-CCccCCcc
Q psy3854 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN-NTQIDCRK 113 (222)
Q Consensus 35 ~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN-g~~i~Grk 113 (222)
...++|| ++|+.+.-.+|.++|++|| -|.|.--++ +-+||.|.+++.|..|+.+|+ +..+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidD-----------TsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDD-----------TSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEET-----------TEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcC-----------CeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 3567888 9999999999999999999 444443233 579999999999999999887 44455554
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.43 E-value=0.00052 Score=52.74 Aligned_cols=59 Identities=10% Similarity=0.317 Sum_probs=48.9
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhc
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYN 105 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LN 105 (222)
+.....++|| .+|+.+.-.+|.++|++||-| .|.-+-| +-+||.|.+++.|..|+.+|+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------------CeEEEEecCHHHHHHHHHhcc
Confidence 4457788999 999999999999999999933 3333333 579999999999999999886
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.00068 Score=52.40 Aligned_cols=74 Identities=7% Similarity=0.076 Sum_probs=61.9
Q ss_pred CccEEEEcCCCCCC-CH----HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCcc
Q psy3854 35 KKGIIYLSKVPPHM-NV----TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQI 109 (222)
Q Consensus 35 ~~g~VYIsnLP~~m-~e----~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i 109 (222)
-+++|+|.|||+.+ .+ ..++.+|..|+++.+....+. |.---|.|.+.++|-+|-..|+|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------------FRRirv~F~~~~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------------FKRVRINFSNPLSAADARLRLHKTEF 71 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------------TTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------------ceEEEEEeCChHHHHHHHHHhcccee
Confidence 57889999999866 43 467999999999998766553 23468999999999999999999999
Q ss_pred CCccccccccc
Q psy3854 110 DCRKRSKHYDF 120 (222)
Q Consensus 110 ~Grk~~~~~~~ 120 (222)
.|+++..|.+.
T Consensus 72 ~g~~~r~YFgq 82 (104)
T 1wey_A 72 LGKEMKLYFAQ 82 (104)
T ss_dssp TTEECEEECCC
T ss_pred cCceeEEEecC
Confidence 99998877754
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.0028 Score=49.01 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcC-----cceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHH----hcC
Q psy3854 36 KGIIYLSKVPPHMNVTQLTEFMSRF-----GEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQ----YNN 106 (222)
Q Consensus 36 ~g~VYIsnLP~~m~e~~Lr~lFs~f-----G~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~----LNg 106 (222)
...|.|.|||+.++++.|.-.|+.- |+|.+|...+ +-|.|+|.+..+|++++.. |||
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------------~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------------CGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------------TEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------------CcEEEEEcChHHHHHHhcCCcceecC
Confidence 4579999999999999999999982 7999998865 2489999999999999987 777
Q ss_pred CccCCcc
Q psy3854 107 TQIDCRK 113 (222)
Q Consensus 107 ~~i~Grk 113 (222)
+++.=.+
T Consensus 74 ~~LsV~P 80 (104)
T 2dhx_A 74 AQLSLRP 80 (104)
T ss_dssp SBCEEEE
T ss_pred eEEEEEc
Confidence 6665433
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.57 E-value=0.0026 Score=48.49 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=59.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
.|-|.+|||.||++++.+.++..=++...+..+-+.+ .+...|.-+||.|.+.++...-.+..||..+-+.+..
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s----~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS----LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS----SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 4889999999999999999998777665555543322 2345578899999999999999999999988776654
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.63 E-value=0.0059 Score=57.84 Aligned_cols=58 Identities=12% Similarity=0.343 Sum_probs=43.0
Q ss_pred ccCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVA 101 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~ 101 (222)
+..-...|||+ .|+..++.+|.+.|++||+|.++++-.+. | .|+-|||.+++.|..+.
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---------~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---------LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---------EEEEEECC---CCHHHH
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---------eEEEEEeCCHHHHHHHH
Confidence 44556789998 89999999999999999999999986432 2 79999999998888554
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.26 E-value=0.011 Score=46.05 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=28.0
Q ss_pred EEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 65 RVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 65 rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
++.|+.+.. +++ |||||+|.+.++|++|+..+|+.
T Consensus 2 ~~kl~ln~~--~~~------G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLK------GETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCE------EEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--ccc------chhHHHHHHHHhHHHHHHhhccc
Confidence 456666643 355 99999999999999999999863
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.83 E-value=0.072 Score=41.88 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=52.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 33 KYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 33 ~~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
.....-|-|-..|+.. -..|-..|++||+|.+..... +. ..=.|.|.++.+|++|+. .||+.|+|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~~--------NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----TG--------NWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----SS--------SEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----CC--------CeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 3356778899999995 667888899999999988721 11 355699999999999996 599999865
Q ss_pred c
Q psy3854 113 K 113 (222)
Q Consensus 113 k 113 (222)
-
T Consensus 87 ~ 87 (119)
T 1wwh_A 87 I 87 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.14 E-value=0.15 Score=48.27 Aligned_cols=59 Identities=10% Similarity=0.311 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCC
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNT 107 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~ 107 (222)
..+.++||+ +|+.+...+|.++|+.||.| +|+-+- + +-+||.|.+++.|..|+..++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--d-----------t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--D-----------TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--S-----------SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--C-----------CeEEEEECCHHHHHHHHHHHHhC
Confidence 456788887 99999999999999999943 554333 2 56999999999999999999643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=91.82 E-value=0.049 Score=42.13 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=27.3
Q ss_pred cEEEEEecchHHHHHHHHHh-cCCccCCccc
Q psy3854 85 TEGWIEFLKKKVAKQVAAQY-NNTQIDCRKR 114 (222)
Q Consensus 85 g~GfVEF~dk~~Ak~A~~~L-Ng~~i~Grk~ 114 (222)
|+++|+|.+.++|++|+..| ||..+.| .+
T Consensus 14 G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~ 43 (150)
T 2i2y_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG-EW 43 (150)
T ss_dssp EEEEEECSSHHHHTTTHHHHHHHHTCCC-EE
T ss_pred ccceeeecCHHHHHHHHHHHhcCCCCCC-ce
Confidence 99999999999999999999 9999999 54
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.48 E-value=0.43 Score=38.12 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=46.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEecCCCC-----CCCCCCCCCc-cEEE--EEecchHHHHHHHHHhcCCc
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRK-----PGEKKPAKQF-TEGW--IEFLKKKVAKQVAAQYNNTQ 108 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~d~~t-----gksKkk~~~~-g~Gf--VEF~dk~~Ak~A~~~LNg~~ 108 (222)
.-|-|=..|+.+. ..+-..|++||.|..-+-..+... ++..++--.| |..| |.|.++.+|.+|+. -||+.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 3445555677665 466678999999987543332111 0000011111 4566 89999999999994 79999
Q ss_pred cCCc
Q psy3854 109 IDCR 112 (222)
Q Consensus 109 i~Gr 112 (222)
|+|-
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9996
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=82.24 E-value=0.049 Score=50.51 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=28.5
Q ss_pred HHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEE--EEEecchHHHHHHHHHhcC
Q psy3854 52 QLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEG--WIEFLKKKVAKQVAAQYNN 106 (222)
Q Consensus 52 ~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~G--fVEF~dk~~Ak~A~~~LNg 106 (222)
.|..||.++|+|..|-.+......+.+ .....|++ |++|.+..+|..++..+|.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~-~~~~~gia~~~~~f~~~~~~~~~~~~e~~ 63 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHH-NQPYCGIAPYIREFEDPRDAPPPTRAETR 63 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccC-CCCcccHHHHHHhhcCcccccccccccCH
Confidence 378999999999887332211100000 00111233 7788777666555544443
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.00 E-value=0.43 Score=35.29 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=0.0
Q ss_pred ccCCccEEEEcCCCCCCCHHH
Q psy3854 32 KKYKKGIIYLSKVPPHMNVTQ 52 (222)
Q Consensus 32 k~~~~g~VYIsnLP~~m~e~~ 52 (222)
+....++|||+|||+.+|++-
T Consensus 93 ~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 93 RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred ccCCCCceEeCCCCCCccccc
Confidence 445667899999999999863
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.89 E-value=11 Score=25.66 Aligned_cols=56 Identities=13% Similarity=0.322 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHhhcCc-----ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcccc
Q psy3854 45 PPHMNVTQLTEFMSRFG-----EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRS 115 (222)
Q Consensus 45 P~~m~e~~Lr~lFs~fG-----~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~~ 115 (222)
-..++|.+|-.++..-| .|++|.+.. .|-||+-.. ..|..++..|++..+.|+++.
T Consensus 10 k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~ 70 (76)
T 2g0c_A 10 KKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------------NASYVEILN-GKGPHVLKVMKNTTVKGKQLK 70 (76)
T ss_dssp C----CHHHHHHHHTSTTCCGGGEEEEEECS--------------SCEEEEECT-TCHHHHHHHHTTCCC---CCC
T ss_pred ccCCCHHHHHHHHHHccCCChhhccEEEEeC--------------CcEEEEECH-HHHHHHHHHhccccCcCceEE
Confidence 34678888888888654 578888854 578999776 678899999999999999864
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.46 E-value=34 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.503 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEec
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMP 70 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~ 70 (222)
..+.|||||+.++..-|..++.. +.+.++.+|.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999988 7676666653
No 226
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.23 E-value=16 Score=30.95 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCcceeEEEEec
Q psy3854 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMP 70 (222)
Q Consensus 38 ~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~ 70 (222)
...|+|||+.++..-|..++...+.+.++.||.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 448999999999999999999877777766654
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.99 E-value=50 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhc-Cc-ceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHh
Q psy3854 34 YKKGIIYLSKVPPHMNVTQLTEFMSR-FG-EVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQY 104 (222)
Q Consensus 34 ~~~g~VYIsnLP~~m~e~~Lr~lFs~-fG-~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~L 104 (222)
....+.|+-..++..+-.++++.+.+ || .|.+|..+.-+. |.+ -++|.+..-.+|-.++..|
T Consensus 20 ~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~K--------KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 20 IEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEK--------KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp HHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCE--------EEEEEECTTSCHHHHHHHS
T ss_pred HHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cce--------EEEEEcCCCCcHHHHHHhh
Confidence 33456788889999999999999988 67 677777765432 443 3999999888888877654
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.98 E-value=24 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEec
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMP 70 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~~ 70 (222)
..+.|+|||+.++..-|..++...+.+.++.||.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4678999999999999999998766676666654
No 229
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.87 E-value=1.7e+02 Score=25.10 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=38.8
Q ss_pred EEcCCCCCC---CHHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCcc
Q psy3854 40 YLSKVPPHM---NVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113 (222)
Q Consensus 40 YIsnLP~~m---~e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk 113 (222)
+|||++.-. ....+.++..+||.|.++.+ | +.=+|...|++.++.+... ++..+.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~------g---------~~~~vvv~~p~~i~~vl~~-~~~~f~~r~ 80 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQL------A---------WTPVVVLNGLAAVREALVT-HGEDTADRP 80 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEE------T---------TEEEEEEEHHHHHHHHHTT-TGGGSCBCC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEE------C---------CeeEEEECCHHHHHHHHHh-CChhhcCCC
Confidence 678865432 23468889999999999887 2 3346777888888876532 444455544
No 230
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=26.44 E-value=68 Score=28.12 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCC----HHHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEecchHHHHHHHHHhcCCccCCc
Q psy3854 37 GIIYLSKVPPHMN----VTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCR 112 (222)
Q Consensus 37 g~VYIsnLP~~m~----e~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~dk~~Ak~A~~~LNg~~i~Gr 112 (222)
+.-+||||+.-.. ...+.++..+||.|.++++ | +.-+|...|++.|+.+... ++..+.++
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~------g---------~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM------G---------TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE------T---------TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe------C---------CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 4567888875332 2568888899999999987 2 3467888899999988743 44444444
Q ss_pred c
Q psy3854 113 K 113 (222)
Q Consensus 113 k 113 (222)
.
T Consensus 79 p 79 (494)
T 3swz_A 79 P 79 (494)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.37 E-value=16 Score=28.99 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=18.0
Q ss_pred HHHHHHhhcCcceeEEEEecCCCCCCCCCCCCCccEEEEEec
Q psy3854 51 TQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFL 92 (222)
Q Consensus 51 ~~Lr~lFs~fG~I~rv~L~~d~~tgksKkk~~~~g~GfVEF~ 92 (222)
+++.+||...|.|..... .| |||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~k------GfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RM------GFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TT------TEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CC------CeeEEeeC
Confidence 456678888888877632 12 89999976
No 232
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.98 E-value=51 Score=27.52 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=25.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEe
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLM 69 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~ 69 (222)
..+.|+|+|+..+..-|..++.....+.++.+|
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 358899999999999999999875555555444
No 233
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=21.50 E-value=50 Score=22.93 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=9.6
Q ss_pred CccEEEEEecc
Q psy3854 83 QFTEGWIEFLK 93 (222)
Q Consensus 83 ~~g~GfVEF~d 93 (222)
..|++||.|+|
T Consensus 32 ~~G~~wiKyED 42 (62)
T 1igq_A 32 AEGYAWLKYED 42 (62)
T ss_dssp STTEEEEEETT
T ss_pred cCceEEEEEec
Confidence 34999999998
No 234
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.45 E-value=72 Score=26.73 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=24.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCcceeEEEEe
Q psy3854 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLM 69 (222)
Q Consensus 37 g~VYIsnLP~~m~e~~Lr~lFs~fG~I~rv~L~ 69 (222)
..+.|||+|+.++..-|..++.....+.++.+|
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 368899999999999998888764444444443
No 235
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=20.30 E-value=22 Score=26.81 Aligned_cols=30 Identities=10% Similarity=-0.200 Sum_probs=0.0
Q ss_pred cEEEEEecchHHHHHHHHHhcCCccCCccc
Q psy3854 85 TEGWIEFLKKKVAKQVAAQYNNTQIDCRKR 114 (222)
Q Consensus 85 g~GfVEF~dk~~Ak~A~~~LNg~~i~Grk~ 114 (222)
.+.|++|.|...|..|+..|+|...+|+..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~ 34 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS 34 (135)
T ss_dssp ------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC
Confidence 468999999999999999999988777654
Done!