RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3854
(222 letters)
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 36.5 bits (84), Expect = 3e-04
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+++ + L S+ G + + KK K G G++E+ K + A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVL---LSMGFGFVEYKKPEQAQ 57
Query: 99 QVAAQYNNTQIDCRK 113
+ Q +D K
Sbjct: 58 KALKQLQGHTVDGHK 72
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 36.1 bits (83), Expect = 3e-04
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+Y+ + P + L E S G + + + + ++ F + A+
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR------RSLGYAYVNFQQPADAE 56
Query: 99 QVAAQYNNTQIDCRK 113
+ N I +
Sbjct: 57 RALDTMNFDVIKGKP 71
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 36.1 bits (83), Expect = 4e-04
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 37 GIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKV 96
G + +S + ++ + E + FG + + + + + F +K
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-------SLGTADVHFERKAD 53
Query: 97 AKQVAAQYNNTQIDCRK 113
A + QYN +D R
Sbjct: 54 ALKAMKQYNGVPLDGRP 70
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 35.9 bits (82), Expect = 5e-04
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 24 PKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKK--RKPGEKKPA 81
P ++++NS IY+ + + + L +F + G V + +K+
Sbjct: 2 PDEDSDNSA------IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG 55
Query: 82 KQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113
K + + + AK ++ K
Sbjct: 56 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 87
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 35.3 bits (81), Expect = 6e-04
Identities = 10/76 (13%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+Y++ +P + QL ++G + + ++ K + ++ + K++ A+
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG------RPRGVAFVRYNKREEAQ 62
Query: 99 QVAAQYNNTQIDCRKR 114
+ + NN + +
Sbjct: 63 EAISALNNVIPEGGSQ 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 30.1 bits (67), Expect = 0.048
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 24 PKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQ 83
+ N + + + + + + L E S++G + V ++ ++ +
Sbjct: 2 NRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR------RS 50
Query: 84 FTEGWIEFLKKKVAKQVAAQYNNTQIDCRK 113
++ F AK+ + N ++D R+
Sbjct: 51 RGFAFVYFENVDDAKEAKERANGMELDGRR 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 30.3 bits (68), Expect = 0.055
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+Y+ + + Q+ E S+ G++ ++ + K K ++E+ + A+
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK------TACGFCFVEYYSRADAE 63
Query: 99 QVAAQYNNTQIDCRK 113
N T++D R
Sbjct: 64 NAMRYINGTRLDDRI 78
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 29.2 bits (65), Expect = 0.11
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 36 KGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKK 95
K ++Y+ + ++ L FG++ + + K ++EF +
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE------KHRGFAFVEFELAE 58
Query: 96 VAKQVAAQYNNTQIDCRK 113
A N +++ R
Sbjct: 59 DAAAAIDNMNESELFGRT 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.4 bits (63), Expect = 0.31
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 38 IIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVA 97
I+Y+ +P + ++ + ++G + ++ + G ++ + A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRG---------TAYVVYEDIFDA 59
Query: 98 KQVAAQYNNTQIDCRK 113
K + + R
Sbjct: 60 KNACDHLSGFNVCNRY 75
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase,
RPTC, insert domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 27.5 bits (61), Expect = 0.50
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 35 KKGIIYLSKVPPHMNVTQLTEFMSRFGEVG-RVYLMPKKRKPG 76
+G + L+ VP H+ ++ F ++ +P+ + PG
Sbjct: 8 MRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRDQGPG 50
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.9 bits (56), Expect = 1.3
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+Y+ + P L + +G++ + K K G+++F A+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN------KCKGYGFVDFDSPSAAQ 54
Query: 99 QVAAQYNNTQIDCRK 113
+ + + +
Sbjct: 55 KAVTALKASGVQAQM 69
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 27.1 bits (60), Expect = 2.0
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 3 EDAGSSNESSPAEEPGKYVLKPKDNTENSKKYKKGI-IYLSKVPP 46
G + EP KYVLKP+ + YK+ I +L +
Sbjct: 244 TKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEE 288
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second
dsRBD {Xenopus laevis [TaxId: 8355]}
Length = 69
Score = 25.1 bits (54), Expect = 2.4
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 48 MNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQ-----FTEGWIEFLKKKVAKQVAA 102
M V L E + G Y + ++ P K+ K+VAK+VAA
Sbjct: 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAA 60
Query: 103 Q 103
+
Sbjct: 61 E 61
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.6 bits (53), Expect = 6.3
Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 39 IYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAK 98
+ + + TE ++GEV + + + +++F +++ A+
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-------DNLGDHLVGNVYVKFRREEDAE 82
Query: 99 QVAAQYNNTQIDCRK 113
+ NN + +
Sbjct: 83 KAVIDLNNRWFNGQP 97
>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
(ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 100
Score = 24.0 bits (52), Expect = 7.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 8 SNESSPAEEPGKYVLKPKDNTENSKKYKKGII 39
S +S + LKP N + + G+
Sbjct: 4 SRGASAPDPDDVRPLKPCLLRRNHSRDQHGVA 35
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 25.1 bits (53), Expect = 8.1
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 103 QYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREAL 162
+ + D + Y LP+F + + K+ ++ + +
Sbjct: 180 EKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDV 239
Query: 163 YFSNNLDVADRIQKKNGKKKTNVPEQSSNKKNDGKGKQIVKKSNTKPVEDRKQFLTSL 220
+ A K + + V ++ + K+ + K ++ S+ + R+Q+ T +
Sbjct: 240 ADMLTPEYAAEKVKVRDELRK-VEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQV 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.370
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,814
Number of extensions: 37089
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 23
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)