Diaphorina citri psyllid: psy3854


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MTEDAGSSNESSPAEEPGKYVLKPKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREALYFSNNLDVADRIQKKNGKKKTNVPEQSSNKKNDGKGKQIVKKSNTKPVEDRKQFLTSLFS
cccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccEEEECcccccccccccccccccEEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccHHHHHHHccc
**********************************KKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLM**************FTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLAYEKQAHRQKLRAEIAEAKREALYFSNNLD***********************************************LTSLFS
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MTEDAGSSNESSPAEEPGKYVLKPKDNTENSKKYKKGIIYLSKVPPHMNVTQLTEFMSRFGEVGRVYLMPKKRKPGEKKPAKQFTEGWIEFLKKKVAKQVAAQYNNTQIDCRKRSKHYDFIWNFKYLPRFKWIHLNERLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDVADRIQKKNGKKKTNVPEQSSNKKNDGKGKQIVKKSNTKPVEDRKQFLTSLFS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-rRNA-processing protein ESF2 Involved in the small subunit (SSU) processome assembly and function, and in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2.confidentP0CL96

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0006366 [BP]transcription from RNA polymerase II promoterprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0006351, GO:0019438
GO:0005667 [CC]transcription factor complexprobableGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0048731 [BP]system developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0008150, GO:0007275, GO:0044699
GO:0006357 [BP]regulation of transcription from RNA polymerase II promoterprobableGO:0009889, GO:0019219, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0051252, GO:2000112, GO:0050794, GO:0050789, GO:0006355, GO:0010556, GO:0065007, GO:0051171, GO:2001141, GO:0008150, GO:0010468

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3S8S, chain A
Confidence level:confident
Coverage over the Query: 35-115
View the alignment between query and template
View the model in PyMOL
Template: 2J8A, chain A
Confidence level:confident
Coverage over the Query: 36-144
View the alignment between query and template
View the model in PyMOL