BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3857
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens
pdb|1ELK|B Chain B, Vhs Domain Of Tom1 Protein From H. Sapiens
Length = 157
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 119/149 (79%), Gaps = 3/149 (2%)
Query: 10 NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
NPF+SPVG +IE ATD +L SE+WALNMEICDIINETE+GPKDA++A++KR+ K++
Sbjct: 11 NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRI--VGNKNF 68
Query: 70 TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSW 128
+M LTVLETCVKNC RFH+LV S+DF++ L + I PKN PP IV DKVL+LIQSW
Sbjct: 69 HEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128
Query: 129 ADAFKDIPNLEGVNQIYQELRSKGIEFPM 157
ADAF+ P+L GV IY++LR KG+EFPM
Sbjct: 129 ADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
pdb|3RRU|B Chain B, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
Length = 152
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 93/144 (64%), Gaps = 3/144 (2%)
Query: 10 NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
+P+A+ VG IE AT + +E+W ICDIIN T+DGPKDA+KA++KR+ + ++
Sbjct: 11 DPYATSVGHLIEKATFAGVQTEDWGQFXHICDIINTTQDGPKDAVKALKKRISK--NYNH 68
Query: 70 TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSW 128
I TL++++ CV+NC F L+ K+F++E L KL+ P+ P+ +Q+++L+ I++W
Sbjct: 69 KEIQLTLSLIDXCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTW 128
Query: 129 ADAFKDIPNLEGVNQIYQELRSKG 152
+ F ++ V ++Y +L KG
Sbjct: 129 SQGFPGGVDVSEVKEVYLDLVKKG 152
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|D Chain D, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|B Chain B, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|C Chain C, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 140
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 8 AFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGK 67
A NPF V E AT +E+W L ++ICD + ++ GPKD +++I +R+ K
Sbjct: 2 ATNPFDQDV----EKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNH---K 54
Query: 68 DYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQS 127
D V M LT+L CV NC + FH+ VCS+DF E+ ++ K P + +K+ +L+
Sbjct: 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN-KGHPKVC--EKLKALMVE 111
Query: 128 WADAFKDIPNLEGVNQIYQELRSKGIEFP 156
W D FK+ P L ++ + + L+ +G+ FP
Sbjct: 112 WTDEFKNDPQLSLISAMIKNLKEQGVTFP 140
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal
Transducing Adaptor Molecule 2
pdb|2L0T|B Chain B, Solution Structure Of The Complex Of Ubiquitin And The Vhs
Domain Of Stam2
Length = 163
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 13 ASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVI 72
A+P +E AT+ +E+W+L M+ICD + T +G KD +KAI KR+ K V
Sbjct: 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNH---KVPHVA 69
Query: 73 MYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132
+ LT+L CV NC + FH+ VCS+DF E+ +I K P + +K+ SL+ W++ F
Sbjct: 70 LQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVC--EKLKSLMVEWSEEF 127
Query: 133 KDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAP 165
+ P ++ + ++ +GI FP P
Sbjct: 128 QKDPQFSLISATIKSMKEEGITFPPAGSQTSGP 160
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
Length = 103
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%)
Query: 198 LTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQL 257
L EQ+ KL +LE+V N+ V +EML L+P Q +D+EL+ EL+ TC+AMQ+R+++L
Sbjct: 3 LGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLEL 62
Query: 258 ISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAIGK 297
I + + E ELL VND LNN+FLR R+E R K
Sbjct: 63 IPQIANEQLTEELLIVNDNLNNVFLRHERFERFRTGQTTK 102
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 20 IEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVL 79
++ AT L +W ++ICD+I + + K A+ +I+K++ K+ V +Y L V+
Sbjct: 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND---KNPHVALYALEVM 69
Query: 80 ETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLE 139
E+ VKNC + H V +K ++EL L+ K + + V++K+L LIQ+WA AF++ P +
Sbjct: 70 ESVVKNCGQTVHDEVANKQTMEELKDLL--KRQVEVNVRNKILYLIQAWAHAFRNEPKYK 127
Query: 140 GVNQIYQELRSKGIEFP-MTDLDAMAPIITPKKSKEVASSHPVQRSKVPMG 189
V YQ ++ +G FP + DAM +++ + + R +V G
Sbjct: 128 VVQDTYQIMKVEGHVFPEFKESDAM---FAAERAPDWVDAEECHRCRVQFG 175
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JUQ|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
Length = 171
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
S + AT+P+ E+W + CD IN+ +GP+ A++ + ++Q + +++ + LT
Sbjct: 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ--SPQEWEALQ-ALT 72
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPII---VQDKVLSLIQSWADAFKD 134
VLE C KNC RRFH V F+ EL K++ PK + V+ KV+ L+ SW A
Sbjct: 73 VLEACXKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTXA--- 129
Query: 135 IPNLEGVNQIYQELRSKGI 153
+P + Y L+ +GI
Sbjct: 130 LPEEAKIKDAYHXLKRQGI 148
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|B Chain B, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|C Chain C, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|D Chain D, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
Length = 171
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
S + AT+P+ E+W + CD IN+ +GP+ A++ + ++Q + +++ + LT
Sbjct: 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ--SPQEWEALQ-ALT 72
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPII---VQDKVLSLIQSWADAFKD 134
VLE C+KNC RRFH V F+ EL K++ PK + V+ KV+ L+ SW A
Sbjct: 73 VLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA--- 129
Query: 135 IPNLEGVNQIYQELRSKGI 153
+P + Y L+ +GI
Sbjct: 130 LPEEAKIKDAYHMLKRQGI 148
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2S|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2T|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2T|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2U|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2U|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2V|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2V|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2W|A Chain A, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
pdb|3G2W|B Chain B, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
Length = 149
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
++I AT+P +WA C+ +NE +GP A + + ++Q + +++ I LT
Sbjct: 14 ARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ--SPQEWEAIQ-ALT 70
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPK---NEPPIIVQDKVLSLIQSWADAFKD 134
VLETC+K+C +RFH V F+ EL K++ PK + V++K+L L+ SW
Sbjct: 71 VLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG--- 127
Query: 135 IPNLEGVNQIYQELRSKGI 153
+P + + YQ L+ +GI
Sbjct: 128 LPEEVKIAEAYQMLKKQGI 146
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|B Chain B, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|C Chain C, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|D Chain D, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
Length = 158
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
++I AT+P +WA C+ +NE +GP A + + ++Q + +++ I LT
Sbjct: 13 ARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ--SPQEWEAIQ-ALT 69
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPK---NEPPIIVQDKVLSLIQSWADAFKD 134
VLETC+K+C +RFH V F+ EL K++ PK + V++K+L L+ SW
Sbjct: 70 VLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG--- 126
Query: 135 IPNLEGVNQIYQELRSKGI 153
+P + + YQ L+ +GI
Sbjct: 127 LPEEVKIAEAYQMLKKQGI 145
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain.
pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1JWG|B Chain B, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1UJJ|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJJ|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJK|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
pdb|1UJK|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
Length = 147
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
++I AT+P +WA C+ +NE +GP A + + ++Q + +++ I LT
Sbjct: 12 ARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ--SPQEWEAIQ-ALT 68
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPK---NEPPIIVQDKVLSLIQSWADAFKD 134
VLETC+K+C +RFH V F+ EL K++ PK + V++K+L L+ SW
Sbjct: 69 VLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG--- 125
Query: 135 IPNLEGVNQIYQELRSKGI 153
+P + + YQ L+ +GI
Sbjct: 126 LPEEVKIAEAYQMLKKQGI 144
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain
pdb|1MHQ|B Chain B, Crystal Structure Of Human Gga2 Vhs Domain
Length = 148
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 23 ATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETC 82
ATDP+++ ++W+ C+ +N +GP A + ++Q K+ +Y LTVLE C
Sbjct: 9 ATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKE---ALYALTVLEMC 65
Query: 83 VKNCNRRFHILVCSKDFIQELYKLIGPK---NEPPIIVQDKVLSLIQSWADAFKDIPNLE 139
+ +C +FH V F+ EL K++ PK + V+ +V+ ++ SW F P
Sbjct: 66 MNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF---PEDI 122
Query: 140 GVNQIYQELRSKGI 153
+ YQ L+ +GI
Sbjct: 123 KIRDAYQMLKKQGI 136
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 12 FASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTV 71
F S +E AT +W + ICD IN+ + PK+A AI+K++ +
Sbjct: 2 FRSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMN---SPNPHS 58
Query: 72 IMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADA 131
Y+L VLE+ VKNC H V +K+ + + ++ P V+ K+L L+Q+WA A
Sbjct: 59 SCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL--ESTPHENVRQKMLELVQTWAYA 116
Query: 132 FKDIPNLEGVNQIYQELRSKGIEFP-MTDLDAM 163
F+ + + L++KG FP + + DAM
Sbjct: 117 FRSSDKYQAIKDTMTILKAKGHTFPELREADAM 149
>pdb|1YD8|G Chain G, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|H Chain H, Complex Of Human Gga3 Gat Domain And Ubiquitin
Length = 98
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 201 EQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSD--IELITELHATCKAMQERIVQLI 258
++VTK LE V N+ + +EML L QE SSD EL+ EL C+ + + +L
Sbjct: 6 QKVTKRLHTLEEVNNNVRLLSEML--LHYSQEDSSDGDRELMKELFDQCENKRRTLFKLA 63
Query: 259 SKYSQED-FITELLQVNDQL 277
S+ D + ++LQ +D L
Sbjct: 64 SETEDNDNSLGDILQASDNL 83
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 32 NWALN-MEICDIINETEDGPKDAIKAIRKRLQQYAGKD 68
N+ +N EICD +N+ D P +A A+ ++ QY +D
Sbjct: 216 NFMVNSQEICDFVNQCHD-PNEAAHAVTEQAIQYGTED 252
>pdb|4GOU|A Chain A, Crystal Structure Of An Rgs-rhogef From Entamoeba
Histolytica
Length = 518
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 208 KDLEVVQANMAVFNEMLNT 226
K+LEVV + +A+F E++NT
Sbjct: 354 KELEVVHSQLAIFQELINT 372
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 32 NWALN-MEICDIINETEDGPKDAIKAIRKRLQQYAGKD 68
N+ +N EICD +N+ D P +A A+ ++ QY +D
Sbjct: 330 NFMVNSQEICDFVNQCHD-PNEAAHAVTEQAIQYGTED 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,216,968
Number of Sequences: 62578
Number of extensions: 355904
Number of successful extensions: 1014
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 18
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)