Query psy3857
Match_columns 349
No_of_seqs 224 out of 738
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 19:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1elk_A Target of MYB1; superhe 100.0 1.5E-49 5.1E-54 345.8 18.4 152 2-157 5-157 (157)
2 1x5b_A Signal transducing adap 100.0 4.6E-47 1.6E-51 331.9 18.6 150 2-162 8-157 (163)
3 1juq_A ADP-ribosylation factor 100.0 2.5E-45 8.6E-50 323.2 19.0 150 2-160 3-157 (171)
4 3ldz_A STAM-1, signal transduc 100.0 1.7E-45 5.7E-50 314.5 16.1 137 14-156 4-140 (140)
5 3rru_A TOM1L1 protein; structu 100.0 6.6E-46 2.2E-50 320.4 12.7 141 10-152 11-152 (152)
6 3g2s_A C-terminal fragment of 100.0 1.8E-44 6E-49 310.7 17.5 140 9-154 5-147 (149)
7 1mhq_A ADP-ribosylation factor 100.0 1E-44 3.6E-49 312.1 15.9 138 16-159 2-142 (148)
8 3zyq_A Hepatocyte growth facto 100.0 1.2E-42 4E-47 319.4 18.7 157 13-174 6-163 (226)
9 1dvp_A HRS, hepatocyte growth 100.0 4.3E-40 1.5E-44 301.2 19.0 143 12-159 2-144 (220)
10 1oxz_A ADP-ribosylation factor 99.9 8E-27 2.7E-31 206.2 3.7 166 150-326 1-185 (186)
11 1wrd_A TOM1, target of MYB pro 99.9 2.1E-24 7.1E-29 174.2 11.3 95 198-292 3-97 (103)
12 1o3x_A ADP-ribosylation factor 99.9 4.9E-23 1.7E-27 174.6 11.5 117 175-291 6-136 (140)
13 1wr6_A ADP-ribosylation factor 99.9 1.3E-23 4.5E-28 171.2 4.3 92 201-292 1-93 (111)
14 1naf_A ADP-ribosylation factor 99.9 1.6E-21 5.5E-26 167.9 10.9 93 200-292 52-146 (158)
15 1vdy_A Hypothetical protein (R 97.9 0.00011 3.9E-09 61.7 11.7 106 17-128 13-128 (140)
16 1sz9_A PCF11 protein; RNA poly 97.8 0.00024 8.2E-09 60.0 12.3 93 35-134 26-118 (144)
17 1inz_A EPS15-interacting porte 97.7 0.0004 1.4E-08 58.9 11.6 115 11-128 20-138 (148)
18 1xgw_A Epsin 4; ENTH, enthopro 97.6 0.0013 4.5E-08 57.3 13.6 114 11-129 31-151 (176)
19 1eyh_A Epsin; superhelix of he 97.5 0.00042 1.5E-08 58.5 9.4 116 12-130 3-122 (144)
20 2pjw_H Uncharacterized protein 97.4 0.00019 6.4E-09 55.5 5.7 74 214-289 9-84 (88)
21 2pjw_V Vacuolar protein sortin 97.3 0.00098 3.3E-08 51.8 8.6 77 215-293 9-86 (91)
22 3onk_A Epsin-3, ENT3; helix, p 97.2 0.0011 3.9E-08 56.2 8.5 116 11-130 8-129 (150)
23 3d9j_A RNA-binding protein 16; 96.1 0.012 4E-07 49.5 7.0 96 28-130 21-119 (145)
24 4flb_A Regulation of nuclear P 95.5 0.044 1.5E-06 44.9 8.0 105 15-131 9-113 (132)
25 1hx8_A Synapse-enriched clathr 94.6 0.19 6.5E-06 47.1 10.4 80 13-95 21-100 (299)
26 3zyl_A Phosphatidylinositol-bi 94.5 0.2 6.7E-06 46.4 9.9 78 14-94 27-104 (271)
27 3zym_A Phosphatidylinositol-bi 94.1 0.24 8.3E-06 46.7 9.9 77 14-93 27-103 (310)
28 2qk2_A LP04448P; mini spindles 92.1 1.5 5.2E-05 38.4 11.7 95 31-132 27-129 (242)
29 4fu3_A Regulation of nuclear P 91.5 0.12 4.3E-06 42.2 3.4 102 16-131 9-114 (135)
30 3f1i_S STAM-1, signal transduc 90.4 2.7 9.2E-05 31.2 9.3 71 216-289 6-76 (77)
31 3f1i_H Hepatocyte growth facto 89.8 0.78 2.7E-05 35.4 6.2 56 209-264 5-60 (98)
32 3dad_A FH1/FH2 domain-containi 86.4 6.3 0.00022 37.4 11.5 97 52-154 202-307 (339)
33 2km4_A Regulator of TY1 transp 84.7 2.2 7.4E-05 35.3 6.7 95 35-131 21-116 (142)
34 2qk1_A Protein STU2; STU2P, XM 83.2 11 0.00037 33.6 11.3 78 50-134 144-224 (249)
35 3clj_A Protein NRD1; CTD-inter 83.0 6.3 0.00021 33.3 8.8 95 34-131 23-130 (157)
36 2qk1_A Protein STU2; STU2P, XM 81.4 11 0.00037 33.6 10.5 96 30-132 27-135 (249)
37 3b2a_A TON_1937, putative unch 80.8 8.4 0.00029 35.0 9.3 95 51-152 32-127 (265)
38 2qk2_A LP04448P; mini spindles 76.9 22 0.00077 30.7 11.0 77 49-133 130-208 (242)
39 2of3_A ZYG-9; multifunctional 68.5 21 0.00072 32.6 8.9 96 30-132 57-163 (266)
40 4db6_A Armadillo repeat protei 68.3 24 0.00084 29.2 8.9 69 53-128 139-207 (210)
41 4ffb_C Protein STU2; tubulin f 66.4 10 0.00036 33.9 6.4 97 29-131 19-133 (278)
42 4ffb_C Protein STU2; tubulin f 66.0 15 0.00051 32.8 7.4 78 49-132 136-214 (278)
43 1xqr_A HSPBP1 protein; armadil 62.3 29 0.00098 31.8 8.6 71 53-130 168-238 (296)
44 4hxt_A De novo protein OR329; 61.4 36 0.0012 28.6 8.8 70 53-129 3-72 (252)
45 4db6_A Armadillo repeat protei 60.4 43 0.0015 27.6 8.9 71 52-129 54-124 (210)
46 3ltj_A Alpharep-4; protein eng 54.5 65 0.0022 26.4 9.0 88 16-128 16-103 (201)
47 4hxt_A De novo protein OR329; 53.6 97 0.0033 25.8 12.5 74 53-133 171-244 (252)
48 1ibr_B P95, importin beta-1 su 49.1 90 0.0031 28.8 10.0 90 51-148 365-456 (462)
49 1xqr_A HSPBP1 protein; armadil 47.0 39 0.0013 30.9 6.8 72 53-130 82-154 (296)
50 4db8_A Armadillo-repeat protei 45.3 74 0.0025 26.9 8.1 108 14-129 12-124 (252)
51 2jdq_A Importin alpha-1 subuni 39.4 1.1E+02 0.0036 28.4 8.7 73 52-130 318-390 (450)
52 4db8_A Armadillo-repeat protei 39.2 52 0.0018 27.9 6.1 69 54-129 14-82 (252)
53 1hu3_A EIF4GII; heat repeat, t 39.1 1.3E+02 0.0043 26.8 8.8 91 34-132 148-241 (260)
54 1qgr_A Protein (importin beta 35.9 2.2E+02 0.0076 28.8 11.2 77 50-134 364-441 (876)
55 4fdd_A Transportin-1; heat rep 35.0 2.5E+02 0.0085 28.9 11.5 76 50-133 357-432 (852)
56 2hy6_A General control protein 34.3 58 0.002 20.0 3.8 26 264-289 7-32 (34)
57 3ul1_B Importin subunit alpha- 33.2 2.3E+02 0.0077 27.4 10.3 70 53-128 359-428 (510)
58 2jdq_A Importin alpha-1 subuni 33.1 2E+02 0.0069 26.4 9.6 72 52-129 107-178 (450)
59 1jdh_A Beta-catenin; beta-cate 32.7 1.7E+02 0.0057 27.7 9.1 71 53-130 102-172 (529)
60 3grl_A General vesicular trans 32.5 59 0.002 33.5 5.9 96 52-153 122-222 (651)
61 4b8j_A Importin subunit alpha- 32.5 1.1E+02 0.0036 29.5 7.7 71 54-130 373-443 (528)
62 3nmw_A APC variant protein; AR 32.4 1.3E+02 0.0044 28.1 8.0 72 53-129 128-199 (354)
63 1wa5_B Importin alpha subunit; 31.9 1.2E+02 0.0042 29.2 8.1 73 53-131 384-458 (530)
64 1xou_B Z5138 gene product; coi 30.5 50 0.0017 24.2 3.6 26 201-226 22-47 (95)
65 1wa5_B Importin alpha subunit; 30.4 87 0.003 30.2 6.7 70 53-128 429-508 (530)
66 4e18_B Catenin alpha-1; four h 30.1 61 0.0021 22.6 3.8 20 241-260 34-53 (59)
67 3f4m_A Tumor necrosis factor, 29.7 1.9E+02 0.0066 24.2 7.6 77 203-285 33-112 (161)
68 2vgl_A Adaptor protein complex 28.3 1.9E+02 0.0066 29.0 9.0 70 50-128 327-396 (621)
69 4b8j_A Importin subunit alpha- 28.2 1.4E+02 0.0048 28.6 7.8 75 51-130 73-147 (528)
70 3tpo_A Importin subunit alpha- 27.8 3.2E+02 0.011 26.3 10.3 70 53-128 378-447 (529)
71 1w63_A Adapter-related protein 27.7 1.9E+02 0.0064 28.9 8.8 65 52-128 313-377 (618)
72 2z6h_A Catenin beta-1, beta-ca 27.5 1.9E+02 0.0065 28.7 8.8 71 53-130 99-169 (644)
73 1b3u_A Protein (protein phosph 26.8 2.3E+02 0.008 26.9 9.1 66 52-127 519-584 (588)
74 3tt9_A Plakophilin-2; cell adh 26.5 2.1E+02 0.0073 25.0 7.9 71 53-129 53-123 (233)
75 3l6x_A Catenin delta-1; cateni 26.2 1.2E+02 0.0041 30.7 6.9 69 53-126 91-159 (584)
76 2z6g_A B-catenin; FULL-length, 26.0 2E+02 0.0069 29.7 8.9 71 53-130 235-305 (780)
77 3nmz_A APC variant protein; pr 25.9 2.4E+02 0.0082 27.3 8.9 73 53-130 244-316 (458)
78 1ibr_B P95, importin beta-1 su 25.5 2.5E+02 0.0084 25.7 8.7 74 51-130 127-203 (462)
79 1b3u_A Protein (protein phosph 25.2 3.5E+02 0.012 25.6 10.1 72 51-132 440-511 (588)
80 1w63_A Adapter-related protein 24.8 1.5E+02 0.0052 29.6 7.5 80 36-129 91-170 (618)
81 3ayh_A DNA-directed RNA polyme 23.8 1.8E+02 0.0061 23.4 6.3 61 31-92 50-121 (136)
82 2z6g_A B-catenin; FULL-length, 23.3 1.5E+02 0.0053 30.5 7.3 72 53-132 594-665 (780)
83 2p6v_A Transcription initiatio 22.8 1.1E+02 0.0037 24.1 4.5 33 97-130 23-55 (114)
84 1jdh_A Beta-catenin; beta-cate 22.7 3.1E+02 0.011 25.7 9.0 73 52-131 59-131 (529)
85 1xm9_A Plakophilin 1; armadill 22.5 2.3E+02 0.0077 27.0 8.0 70 54-130 4-73 (457)
86 1wjt_A Transcription elongatio 21.8 2.3E+02 0.0077 21.7 6.3 31 98-133 57-87 (103)
87 3ltj_A Alpharep-4; protein eng 21.4 3.2E+02 0.011 21.9 9.4 89 16-129 47-135 (201)
88 3bu8_A Telomeric repeat-bindin 21.2 4E+02 0.014 23.6 8.3 41 77-126 119-159 (235)
89 4e17_B Catenin alpha-1; four h 20.8 1E+02 0.0034 19.8 3.2 20 241-260 15-34 (40)
90 3ltm_A Alpha-REP4; protein eng 20.6 3.4E+02 0.012 22.0 9.3 89 15-128 20-108 (211)
91 2bpt_A Importin beta-1 subunit 20.5 3.7E+02 0.013 27.1 9.5 77 51-133 638-714 (861)
92 3twe_A Alpha4H; unknown functi 20.5 1.2E+02 0.0041 17.1 3.1 17 241-257 4-20 (27)
93 3tpo_A Importin subunit alpha- 20.3 3.1E+02 0.011 26.4 8.5 72 51-129 250-321 (529)
94 2z6h_A Catenin beta-1, beta-ca 20.3 3.5E+02 0.012 26.8 9.1 73 52-131 56-128 (644)
No 1
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1.5e-49 Score=345.84 Aligned_cols=152 Identities=63% Similarity=1.098 Sum_probs=146.0
Q ss_pred CcCCCCCCCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy3857 2 ASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLET 81 (349)
Q Consensus 2 ~~~~~~~~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~ 81 (349)
|+||+. +||+++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+++ +|+++|++||+|||+
T Consensus 5 m~f~~~--~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~--~n~~v~l~AL~LLd~ 80 (157)
T 1elk_A 5 SDFLLG--NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN--KNFHEVMLALTVLET 80 (157)
T ss_dssp CCCCCS--CGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred CCCcCC--CCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC--CCHHHHHHHHHHHHH
Confidence 788884 9999999999999999999999999999999999999999999999999999844 899999999999999
Q ss_pred HHhcCchhHHHHhhcHHHHHH-HHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCC
Q psy3857 82 CVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPM 157 (349)
Q Consensus 82 ~vkNcG~~Fh~~i~~k~Fl~e-L~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~ 157 (349)
||||||++||.+|++++|+++ |++++.+++.++..||+||+++|+.|+.+|+++|++.+|.++|+.||++||.||.
T Consensus 81 ~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 81 CVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999 8999988877778999999999999999999999999999999999999999994
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=4.6e-47 Score=331.88 Aligned_cols=150 Identities=35% Similarity=0.639 Sum_probs=141.3
Q ss_pred CcCCCCCCCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy3857 2 ASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLET 81 (349)
Q Consensus 2 ~~~~~~~~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~ 81 (349)
||||+. +| ++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+ + +||++|++||+|||+
T Consensus 8 M~~~~~--~p----~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~-~--~n~~vql~AL~LLd~ 78 (163)
T 1x5b_A 8 MPLFTA--NP----FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVN-H--KVPHVALQALTLLGA 78 (163)
T ss_dssp CCCCCC--CT----THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHH
T ss_pred CCCcCC--Ch----HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHH
Confidence 899984 55 56899999999999999999999999999999999999999999999 6 999999999999999
Q ss_pred HHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCCCccc
Q psy3857 82 CVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLD 161 (349)
Q Consensus 82 ~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~~~~~ 161 (349)
||||||++||.+|++++|+++|+++++++ ++..||+||+++|+.|+.+|+++++|..|.++|+.||++||.||..+.+
T Consensus 79 ~vkNcG~~Fh~evas~~Fl~el~~l~~~~--~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~ 156 (163)
T 1x5b_A 79 CVANCGKIFHLEVCSRDFATEVRAVIKNK--AHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQ 156 (163)
T ss_dssp HHHHTCHHHHHHHTSHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCCSSC
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCCCCC
Confidence 99999999999999999999999999754 4679999999999999999999999999999999999999999998754
Q ss_pred c
Q psy3857 162 A 162 (349)
Q Consensus 162 ~ 162 (349)
+
T Consensus 157 ~ 157 (163)
T 1x5b_A 157 T 157 (163)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=2.5e-45 Score=323.15 Aligned_cols=150 Identities=31% Similarity=0.527 Sum_probs=132.6
Q ss_pred CcCCCCCCCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy3857 2 ASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLET 81 (349)
Q Consensus 2 ~~~~~~~~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~ 81 (349)
||+|+. ++.++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+ | +||++|++||+|||+
T Consensus 3 mg~~~~---~~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~-~--~n~~vql~AL~LLd~ 76 (171)
T 1juq_A 3 MGSMAE---AEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ-S--PQEWEALQALTVLEA 76 (171)
T ss_dssp ------------CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHH
T ss_pred cccCCC---CCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHH
Confidence 788874 5667999999999999999999999999999999999999999999999999 6 999999999999999
Q ss_pred HHhcCchhHHHHhhcHHHHHHHHHHhCCCC---CCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCC--C
Q psy3857 82 CVKNCNRRFHILVCSKDFIQELYKLIGPKN---EPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEF--P 156 (349)
Q Consensus 82 ~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~---~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~f--P 156 (349)
||||||++||.+|++++|+++|++++++++ .++..||+||+++|+.|+.+|+++ +.|+++|+.||++||.| |
T Consensus 77 ~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~---~~i~~~y~~Lk~~G~~f~~P 153 (171)
T 1juq_A 77 CMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE---AKIKDAYHMLKRQGIVQSDP 153 (171)
T ss_dssp HHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999999998764 357899999999999999999764 46999999999999988 7
Q ss_pred CCcc
Q psy3857 157 MTDL 160 (349)
Q Consensus 157 ~~~~ 160 (349)
..+.
T Consensus 154 ~~~~ 157 (171)
T 1juq_A 154 PIPV 157 (171)
T ss_dssp CBCC
T ss_pred CCCc
Confidence 7653
No 4
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=1.7e-45 Score=314.54 Aligned_cols=137 Identities=36% Similarity=0.733 Sum_probs=131.7
Q ss_pred CcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy3857 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHIL 93 (349)
Q Consensus 14 t~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~ 93 (349)
+|++.+|++||++.+.++||++|++|||+||+++.+|++|+|+|+|||+ + +||++|++||+|||+||||||++||.+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~-~--~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVN-H--KDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHc-C--CChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4577899999999999999999999999999999999999999999999 6 999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCC
Q psy3857 94 VCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFP 156 (349)
Q Consensus 94 i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP 156 (349)
|++++|+++|+++++ + ++..||+||+++|+.|+.+|+++|+|..|.++|++||++||.||
T Consensus 81 vas~~Fl~el~~l~~-~--~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN-K--GHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HSSHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred HhhHHHHHHHHHHhc-c--CCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccCcCc
Confidence 999999999999994 3 46799999999999999999999999999999999999999998
No 5
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-46 Score=320.40 Aligned_cols=141 Identities=39% Similarity=0.788 Sum_probs=134.7
Q ss_pred CCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchh
Q psy3857 10 NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRR 89 (349)
Q Consensus 10 ~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~ 89 (349)
+||+|+++.+|++||++++.+|||++|++|||+||+++++|++|+|+|+|||++ ++|+++|++||+|||+||||||++
T Consensus 11 ~~~~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~--~~n~~~~l~AL~LLe~cvkNCG~~ 88 (152)
T 3rru_A 11 DPYATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISK--NYNHKEIQLTLSLIDMCVQNCGPS 88 (152)
T ss_dssp CGGGSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTT--CCBHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHhcCHH
Confidence 799999999999999999999999999999999999999999999999999983 279999999999999999999999
Q ss_pred HHHHhhcHHHHHH-HHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q psy3857 90 FHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKG 152 (349)
Q Consensus 90 Fh~~i~~k~Fl~e-L~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G 152 (349)
||.+|++++|+++ |++++++++.++..||+||+++|+.|+.+|+++|++++|.++|++|+++|
T Consensus 89 fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 89 FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 9999999999998 99999877666789999999999999999999999999999999999998
No 6
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=1.8e-44 Score=310.66 Aligned_cols=140 Identities=31% Similarity=0.503 Sum_probs=132.8
Q ss_pred CCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCch
Q psy3857 9 FNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNR 88 (349)
Q Consensus 9 ~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~ 88 (349)
.+|++++++.+|++||++++.+|||++|++|||+||+++++|++|+|+|+|||+ + +||++|++||+|||+||||||+
T Consensus 5 ~~~~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~-~--~n~~v~l~AL~LLe~cvkNCG~ 81 (149)
T 3g2s_A 5 PAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ-S--PQEWEAIQALTVLETCMKSCGK 81 (149)
T ss_dssp CCCSCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHCCH
T ss_pred cCCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHHHHHhcCH
Confidence 478999999999999999999999999999999999999999999999999999 6 9999999999999999999999
Q ss_pred hHHHHhhcHHHHHHHHHHhCCCC---CCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCC
Q psy3857 89 RFHILVCSKDFIQELYKLIGPKN---EPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIE 154 (349)
Q Consensus 89 ~Fh~~i~~k~Fl~eL~kl~~~k~---~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~ 154 (349)
+||.+|++++|+++|++++++++ .++..||+||+++|+.|+.+|+++| .|.++|++||++||.
T Consensus 82 ~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p---~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 82 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV---KIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTCC
T ss_pred HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHCcCc
Confidence 99999999999999999998875 3678999999999999999997654 599999999999985
No 7
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1e-44 Score=312.10 Aligned_cols=138 Identities=28% Similarity=0.518 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy3857 16 VGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVC 95 (349)
Q Consensus 16 ~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~ 95 (349)
++.+|++||++.+.+|||++|++|||+||+++.+|++|+|+|+|||+ | +||++|++||+|||+||||||++||.+|+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~-~--~n~~vql~AL~LLe~~vkNCG~~fh~eva 78 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQ-S--PQEKEALYALTVLEMCMNHCGEKFHSEVA 78 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999 6 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCC---CCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCCCc
Q psy3857 96 SKDFIQELYKLIGPKN---EPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTD 159 (349)
Q Consensus 96 ~k~Fl~eL~kl~~~k~---~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~~~ 159 (349)
+++|+++|++++++++ .++..||+||+++|+.|+.+|+++| .|.++|++|+++||.||..+
T Consensus 79 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p---~i~~~y~~Lk~~G~~Fp~~~ 142 (148)
T 1mhq_A 79 KFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDI---KIRDAYQMLKKQGIIKQDPK 142 (148)
T ss_dssp SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTSSCSCCC
T ss_pred hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHcCCCCCCCC
Confidence 9999999999998764 2578999999999999999997665 49999999999999999765
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=1.2e-42 Score=319.37 Aligned_cols=157 Identities=31% Similarity=0.523 Sum_probs=142.9
Q ss_pred CCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHH
Q psy3857 13 ASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHI 92 (349)
Q Consensus 13 st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~ 92 (349)
+++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+ + +||++|++||+|||+||||||++||.
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~-~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVN-D--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45899999999999999999999999999999999999999999999999 6 99999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCCCc-cccCCCCCCCCC
Q psy3857 93 LVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTD-LDAMAPIITPKK 171 (349)
Q Consensus 93 ~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~~~-~~~~~p~~tp~~ 171 (349)
+|++++|+++|++++++ .++..||+||+++|+.|+.+|+++++|..|.++|++||++||.||..+ .+++.....++.
T Consensus 83 eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~ 160 (226)
T 3zyq_A 83 EVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPD 160 (226)
T ss_dssp HHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCC
T ss_pred hhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCcccchhHHHhhhcccccc
Confidence 99999999999999964 367899999999999999999999999999999999999999999864 444544444555
Q ss_pred Ccc
Q psy3857 172 SKE 174 (349)
Q Consensus 172 s~~ 174 (349)
+++
T Consensus 161 W~~ 163 (226)
T 3zyq_A 161 WVD 163 (226)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=4.3e-40 Score=301.24 Aligned_cols=143 Identities=31% Similarity=0.496 Sum_probs=136.5
Q ss_pred CCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHH
Q psy3857 12 FASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFH 91 (349)
Q Consensus 12 ~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh 91 (349)
|+|+++.+|++||++.+.+|||++|++|||+||+++++|++|+++|+|||+ + +||++|++||+|||+||+|||++||
T Consensus 2 f~~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~-~--~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 2 FRSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMN-S--PNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp CCSHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CcchHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHHHHhccCHHHH
Confidence 556799999999999999999999999999999999999999999999999 6 9999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCCCc
Q psy3857 92 ILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTD 159 (349)
Q Consensus 92 ~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~~~ 159 (349)
.+|++++|+++|+++++. .++..||+||+++|+.|+.+|++++++..|.++|+.|+.+|+.||...
T Consensus 79 ~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~~~ 144 (220)
T 1dvp_A 79 EEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELR 144 (220)
T ss_dssp HHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCccccccc
Confidence 999999999999999964 356899999999999999999999999999999999999999999864
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.92 E-value=8e-27 Score=206.19 Aligned_cols=166 Identities=23% Similarity=0.337 Sum_probs=100.2
Q ss_pred hcCCC--CCCCccccCCCCCC--CCCCc-cccCCCCCc----CCCCCC-CCCCCCCC--CC-----ChHHHHhHHHHHHH
Q psy3857 150 SKGIE--FPMTDLDAMAPIIT--PKKSK-EVASSHPVQ----RSKVPM-GAAGDHDE--RL-----TPEQVTKLHKDLEV 212 (349)
Q Consensus 150 ~~G~~--fP~~~~~~~~p~~t--p~~s~-~~~~~~~~~----~s~~p~-~~~~~~~~--~~-----~~e~~~kl~~el~~ 212 (349)
++||+ .|..+.+...|+++ |.+++ +++++++.+ .+++|+ .+.+|..+ ++ +.++++|+.++|++
T Consensus 1 kqgii~~dp~~~~~~~~~~p~~~~~~~if~deekSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~ 80 (186)
T 1oxz_A 1 KQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEE 80 (186)
T ss_dssp ------------------------------CTTHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCCCCCCCCCcccccCCcHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 46775 36555444333332 34455 556665533 466665 55566554 22 24678999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy3857 213 VQANMAVFNEMLNTLIPGQEHSS-DIELITELHATCKAMQERIVQLISKY-SQEDFITELLQVNDQLNNLFLRFNRYESN 290 (349)
Q Consensus 213 v~~n~~lL~emL~~~~p~~~~~~-d~e~i~eL~~~ck~~q~~i~~li~~~-~dee~l~~LL~~ND~L~~al~~Y~~~~~~ 290 (349)
|++|++||+|||++++|++.... +.|+++|||++|++|||+|++||+++ +||++|+++|++||+|+++|.+|+++++|
T Consensus 81 V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g 160 (186)
T 1oxz_A 81 VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRG 160 (186)
T ss_dssp HHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999998877 89999999999999999999999885 67899999999999999999999999887
Q ss_pred hhhhhcCCCCCccccCCCCCCCCCCCCCCcCCCCCC
Q psy3857 291 REAAIGKQNPDAASKLSKKPDVAADSGPSLIDLDDD 326 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiD~~~~ 326 (349)
+.. .+....+..| .+++.||||.+.
T Consensus 161 ~~~-------~~~~~~~~~~----~~~~~l~dl~~~ 185 (186)
T 1oxz_A 161 EEV-------NGDATAGSIP----GSTSALLDLSGL 185 (186)
T ss_dssp CC----------------------------------
T ss_pred CCC-------CccccCCCCC----CCcccccCCcCC
Confidence 642 1111111112 446789998764
No 11
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.91 E-value=2.1e-24 Score=174.18 Aligned_cols=95 Identities=47% Similarity=0.791 Sum_probs=90.4
Q ss_pred CChHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHhhhHHH
Q psy3857 198 LTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQL 277 (349)
Q Consensus 198 ~~~e~~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~~~dee~l~~LL~~ND~L 277 (349)
+.+|+++|+.++|++|++|++||+|||++++|++....++|+++|||.+|++|||+|++||+.++||++|+++|++||+|
T Consensus 3 ~~~eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L 82 (103)
T 1wrd_A 3 LGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNL 82 (103)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHH
Confidence 45789999999999999999999999999999988878899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy3857 278 NNLFLRFNRYESNRE 292 (349)
Q Consensus 278 ~~al~~Y~~~~~~~~ 292 (349)
+++|.+|+++++++.
T Consensus 83 ~~vl~ry~~~~~~~~ 97 (103)
T 1wrd_A 83 NNVFLRHERFERFRT 97 (103)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998774
No 12
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.89 E-value=4.9e-23 Score=174.56 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=91.4
Q ss_pred ccCCCCCc----CCCCCC-CCCCCCCC--CCC-----hHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-cHHHHH
Q psy3857 175 VASSHPVQ----RSKVPM-GAAGDHDE--RLT-----PEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSS-DIELIT 241 (349)
Q Consensus 175 ~~~~~~~~----~s~~p~-~~~~~~~~--~~~-----~e~~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~-d~e~i~ 241 (349)
++++++.+ .|++|. .+.+|..+ ++. .++++|+.++|++|++|++||+|||++++||+.... +.|+++
T Consensus 6 ~e~ks~~L~~Lirs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~ 85 (140)
T 1o3x_A 6 DEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK 85 (140)
T ss_dssp ---------------------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 44555433 366676 67788876 332 357899999999999999999999999999998877 889999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy3857 242 ELHATCKAMQERIVQLISKY-SQEDFITELLQVNDQLNNLFLRFNRYESNR 291 (349)
Q Consensus 242 eL~~~ck~~q~~i~~li~~~-~dee~l~~LL~~ND~L~~al~~Y~~~~~~~ 291 (349)
|||++|++|||+|++||+++ +||++|+++|++||+|+++|.+|+++++|+
T Consensus 86 eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~ 136 (140)
T 1o3x_A 86 ELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGE 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999885 678899999999999999999999998765
No 13
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.88 E-value=1.3e-23 Score=171.22 Aligned_cols=92 Identities=24% Similarity=0.392 Sum_probs=84.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHhhhHHHHH
Q psy3857 201 EQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKY-SQEDFITELLQVNDQLNN 279 (349)
Q Consensus 201 e~~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~~-~dee~l~~LL~~ND~L~~ 279 (349)
|+++|+.++|++|++|++||+|||++++||+.+..|.|+++|||.+|++|||+|++||+++ +||++|++||++||+|++
T Consensus 1 e~~~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~ 80 (111)
T 1wr6_A 1 QKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSR 80 (111)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHH
Confidence 3567889999999999999999999999999888889999999999999999999999986 578899999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy3857 280 LFLRFNRYESNRE 292 (349)
Q Consensus 280 al~~Y~~~~~~~~ 292 (349)
+|.+|+++++|+.
T Consensus 81 vi~rY~~~~~g~~ 93 (111)
T 1wr6_A 81 VINSYKTIIEGQV 93 (111)
T ss_dssp HHTHHHHTTTCC-
T ss_pred HHHHHHHHhcCCC
Confidence 9999999988663
No 14
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=1.6e-21 Score=167.92 Aligned_cols=93 Identities=24% Similarity=0.417 Sum_probs=81.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHhhhHHH
Q psy3857 200 PEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSS-DIELITELHATCKAMQERIVQLISKY-SQEDFITELLQVNDQL 277 (349)
Q Consensus 200 ~e~~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~-d~e~i~eL~~~ck~~q~~i~~li~~~-~dee~l~~LL~~ND~L 277 (349)
.++++|+.++|++|++|++||+|||++++|++.... +.|+++|||++|+++||+|++||+++ +||++|+++|++||+|
T Consensus 52 ~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~L 131 (158)
T 1naf_A 52 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNL 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHH
Confidence 467899999999999999999999999999988776 88999999999999999999999885 6789999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy3857 278 NNLFLRFNRYESNRE 292 (349)
Q Consensus 278 ~~al~~Y~~~~~~~~ 292 (349)
+++|.+|+++++|+.
T Consensus 132 n~vl~kY~~~~~g~~ 146 (158)
T 1naf_A 132 TQVINLYKQLVRGEE 146 (158)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999988663
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.91 E-value=0.00011 Score=61.69 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy3857 17 GSKIEMATDPTLASENWALNMEICDIINETE-DGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVC 95 (349)
Q Consensus 17 ~~~I~~AT~~~~~~~dw~~~l~icD~In~~~-~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~ 95 (349)
..+|.+||+..-..+--.+.-+|+++..... +...+.+..|-|||+ . +++++.+-||.||+.|++|++..|..++-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~-~--k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD-N--KSPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-S--SSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc-C--CCcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 3579999998654444456779999988765 346899999999999 5 89999999999999999999999998875
Q ss_pred cHHHHHHHHHHhCC-CCCC--------ChhHHHHHHHHHHHH
Q psy3857 96 SKDFIQELYKLIGP-KNEP--------PIIVQDKVLSLIQSW 128 (349)
Q Consensus 96 ~k~Fl~eL~kl~~~-k~~~--------~~~Vk~kil~li~~W 128 (349)
+.-. +++.+.. ++.+ ...||.+.-+++..-
T Consensus 90 ~~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 90 RNSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HTTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HhHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 5433 2343321 1111 146777777766543
No 16
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=97.82 E-value=0.00024 Score=60.04 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCC
Q psy3857 35 LNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPP 114 (349)
Q Consensus 35 ~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~ 114 (349)
.|-.+....-.....++..+.+|.++|+ . ..|..-+.+|-|+|..|||||..|+..++. .+.+.+...+. ..+
T Consensus 26 ~I~~LT~~a~~~~~~a~~Iv~~i~~~i~-k--~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~---~~d 98 (144)
T 1sz9_A 26 IITTLTKLAEENISCAQYFVDAIESRIE-K--CMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL---LVD 98 (144)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH---TSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--CCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH---hCC
Confidence 3333333333344589999999999999 5 899999999999999999999999876664 23333333332 135
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q psy3857 115 IIVQDKVLSLIQSWADAFKD 134 (349)
Q Consensus 115 ~~Vk~kil~li~~W~~~f~~ 134 (349)
..+|.|+..++..|...|.+
T Consensus 99 ~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 99 NTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp HHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHHHhCcccC
Confidence 78999999999999988653
No 17
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.69 E-value=0.0004 Score=58.93 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=85.3
Q ss_pred CCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhH
Q psy3857 11 PFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRF 90 (349)
Q Consensus 11 p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~F 90 (349)
.|| +++.+|..||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. .+++.+.++-||.|||.|++|+..+|
T Consensus 20 ~~s-~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d-~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYS-EAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLND-HGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCC-CHHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGC-CSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCC-HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHcc-CCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 355 8999999999988777777788899988765 35678899999999994 45789999999999999999999988
Q ss_pred HHHhhcHHH-HHHHHHH--hCCCC-CCChhHHHHHHHHHHHH
Q psy3857 91 HILVCSKDF-IQELYKL--IGPKN-EPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 91 h~~i~~k~F-l~eL~kl--~~~k~-~~~~~Vk~kil~li~~W 128 (349)
-.++...-+ +..|... +.+.. +-...|++|.-+++..-
T Consensus 97 v~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL 138 (148)
T 1inz_A 97 SQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALL 138 (148)
T ss_dssp HHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHh
Confidence 876644333 2333331 22111 11357898888777654
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.59 E-value=0.0013 Score=57.27 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-hhcCCCCHHHHHHHHHHHHHHHhcCchh
Q psy3857 11 PFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRL-QQYAGKDYTVIMYTLTVLETCVKNCNRR 89 (349)
Q Consensus 11 p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl-~~~~~~n~~~~l~AL~LLd~~vkNcG~~ 89 (349)
.|| +++.+|..||+...-.|.-..+-+||+.--.. ..-.+.+..|.||| + ..+++.+.++-||+|||.|++|+..+
T Consensus 31 ~ys-~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~-~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYS-EIESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLK-DNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCC-HHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHS-SCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCC-HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 455 89999999999877777777888898876653 57789999999996 5 23589999999999999999999988
Q ss_pred HHHHhhcHHHHHHHHHHhCCCC----CCC--hhHHHHHHHHHHHHH
Q psy3857 90 FHILVCSKDFIQELYKLIGPKN----EPP--IIVQDKVLSLIQSWA 129 (349)
Q Consensus 90 Fh~~i~~k~Fl~eL~kl~~~k~----~~~--~~Vk~kil~li~~W~ 129 (349)
|-..+ ++.+..|..|-.=.+ ..+ ..||+|+-+++..-.
T Consensus 108 vv~~~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 108 VVTSA--REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHH--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 87766 344444433321111 112 469999888887664
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.52 E-value=0.00042 Score=58.51 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=82.9
Q ss_pred CCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHH
Q psy3857 12 FASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFH 91 (349)
Q Consensus 12 ~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh 91 (349)
|| +++.+|..||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. .+++.+.++-||.|||.|++|+...|-
T Consensus 3 ys-~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d-~~k~Wr~vyKaL~lleyLl~nGse~vv 79 (144)
T 1eyh_A 3 YS-EAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLND-HGKNWRHVYKAMTLMEYLIKTGSERVS 79 (144)
T ss_dssp CC-HHHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSC-CGGGHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CC-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHcc-CCcchHHHhHHHHHHHHHHHhCCHHHH
Confidence 55 7999999999998777887888888887654 34667899999999994 356899999999999999999998887
Q ss_pred HHhhcHHH-HHHHHHH--hCCCCC-CChhHHHHHHHHHHHHHH
Q psy3857 92 ILVCSKDF-IQELYKL--IGPKNE-PPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 92 ~~i~~k~F-l~eL~kl--~~~k~~-~~~~Vk~kil~li~~W~~ 130 (349)
..+...-+ +..|... +.+... -...|++|.-+++..-.+
T Consensus 80 ~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 80 QQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 65533222 1112111 111111 124789988888876654
No 20
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00019 Score=55.45 Aligned_cols=74 Identities=14% Similarity=0.286 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCC-C-CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy3857 214 QANMAVFNEMLNTLIPGQ-E-HSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYES 289 (349)
Q Consensus 214 ~~n~~lL~emL~~~~p~~-~-~~~d~e~i~eL~~~ck~~q~~i~~li~~~~dee~l~~LL~~ND~L~~al~~Y~~~~~ 289 (349)
..+|..|-++|.+..|.. . ...+++.|++||.++-.+||+|.++|.....-. ++|+.+|+.|.++..-|+.+..
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle 84 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMD 84 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999887622 1 335668899999999999999999999865442 2789999999999999999875
No 21
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00098 Score=51.77 Aligned_cols=77 Identities=10% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcC-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy3857 215 ANMAVFNEMLNTLI-PGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREA 293 (349)
Q Consensus 215 ~n~~lL~emL~~~~-p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~~~dee~l~~LL~~ND~L~~al~~Y~~~~~~~~~ 293 (349)
.++.+|...+...+ .+..+..+++-+++||.++-.+|||+.+.+.+...- -.+|+.+|+.|..+..-|+++...+-.
T Consensus 9 d~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~lLE~~l~ 86 (91)
T 2pjw_V 9 DSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDRLLEQQLQ 86 (91)
T ss_dssp HHHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655432 122234566889999999999999999999874432 348899999999999999999886654
No 22
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.21 E-value=0.0011 Score=56.22 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=82.1
Q ss_pred CCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhH
Q psy3857 11 PFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRF 90 (349)
Q Consensus 11 p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~F 90 (349)
-|| +++.+|..||+...-.|.-..+-+|++.--. ...-.+.+..|.|||..+.+.+.+.++-||+|||.|++|+...|
T Consensus 8 ~ys-~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~v 85 (150)
T 3onk_A 8 NYT-EMEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERF 85 (150)
T ss_dssp CCC-HHHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCC-HHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 366 8999999999977666776777778776442 24566889999999984323489999999999999999999988
Q ss_pred HHHhhcHHHHHHHHHHhCCCC----CC--ChhHHHHHHHHHHHHHH
Q psy3857 91 HILVCSKDFIQELYKLIGPKN----EP--PIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 91 h~~i~~k~Fl~eL~kl~~~k~----~~--~~~Vk~kil~li~~W~~ 130 (349)
-.++...-++ |..+-.=.+ .. -..||+|.-+++....+
T Consensus 86 v~~~r~~~~~--i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 86 IDDTRNSINL--IRILETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp HHHHHTTHHH--HHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HHhhhcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 8776443332 222211011 11 14789998888877643
No 23
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.13 E-value=0.012 Score=49.54 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=68.3
Q ss_pred CCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHH---HhhcHHHHHHHH
Q psy3857 28 LASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHI---LVCSKDFIQELY 104 (349)
Q Consensus 28 ~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~---~i~~k~Fl~eL~ 104 (349)
+..+-+..+-.+|. .....++..|..+.++|+ . ..|..-+-+|-|+|..++|+|..+.. .++ ..|...|.
T Consensus 21 ~S~~~I~~LT~~a~---~~~~~~~~IV~~~~~~i~-k--~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~ 93 (145)
T 3d9j_A 21 ISKAKMTQITKAAI---KAIKFYKHVVQSVEKFIQ-K--CKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNII 93 (145)
T ss_dssp CCHHHHHHHHHHHH---HTGGGHHHHHHHHHHHHH-H--SCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-h--CCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHH
Confidence 33344444444444 333478899999999999 4 78888899999999999999985431 111 35777777
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 105 KLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 105 kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
+++..-+..+..+|.++..++..|..
T Consensus 94 ~~f~~~~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 94 STFQNLYRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp HHHHHHTSSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence 76632222357899999999999985
No 24
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=95.54 E-value=0.044 Score=44.89 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=73.4
Q ss_pred cHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHh
Q psy3857 15 PVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILV 94 (349)
Q Consensus 15 ~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i 94 (349)
.+++.+...|. --..|-.+...+-.....+.+.+..|.++|+ . ..+..-+..|-|++..++||+.+.+..+
T Consensus 9 ~l~~~L~~L~~------s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~-~--~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 9 SLDRKFQSVTN------TMESIQGLSSWCIENKKHHSTIVYHWMKWLR-R--SAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHCCS------SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHCcc------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-c--CChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 45566665543 2234555555544445678999999999999 4 7888889999999999999987655443
Q ss_pred hcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy3857 95 CSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 95 ~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~ 131 (349)
. +.|-.-|..++..- .++.+++++..++..|.+.
T Consensus 80 ~-~~f~~~l~~~~~~~--~~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 80 R-ESFADVLPEAAALV--KDPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp H-HHHHTTHHHHHHTT--CSTTTHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccC
Confidence 3 24555555555322 2457899999999999985
No 25
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=94.62 E-value=0.19 Score=47.09 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHH
Q psy3857 13 ASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHI 92 (349)
Q Consensus 13 st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~ 92 (349)
++.++..|-|||+.....|+-..+-.|....+.......+.+++|.+|.+ . +|..+++-||.++.-++.-+.+.|-.
T Consensus 21 ~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~-~--~~w~va~K~LivlH~llreG~~~~~~ 97 (299)
T 1hx8_A 21 GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ-N--ANWVVVYKSLITTHHLMAYGNERFMQ 97 (299)
T ss_dssp -CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhcc-C--CcHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45799999999999888899888888888888777778899999999987 5 89999999999999999998766655
Q ss_pred Hhh
Q psy3857 93 LVC 95 (349)
Q Consensus 93 ~i~ 95 (349)
+++
T Consensus 98 ~l~ 100 (299)
T 1hx8_A 98 YLA 100 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 26
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=94.46 E-value=0.2 Score=46.41 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=66.5
Q ss_pred CcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy3857 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHIL 93 (349)
Q Consensus 14 t~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~ 93 (349)
+.++..|-+||+.....|+-..+-+|.-.......+..+.+++|.+|++ . +|..+++-||.++.-|+..+.+.|-.+
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~--~~w~v~~KaLivlH~llreG~~~~l~~ 103 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-N--SSWVVVFKSLITTHHLMVYGNERFIQY 103 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-C--CchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4688899999999888888888888887777767788999999999999 5 899999999999999999976655443
Q ss_pred h
Q psy3857 94 V 94 (349)
Q Consensus 94 i 94 (349)
+
T Consensus 104 ~ 104 (271)
T 3zyl_A 104 L 104 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=94.11 E-value=0.24 Score=46.68 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=66.2
Q ss_pred CcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHH
Q psy3857 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHIL 93 (349)
Q Consensus 14 t~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~ 93 (349)
+.++..|-+||+.....|.-..+-.|.........+..+.+++|.+|++ . +|..+++-||.++..|+..+.+.|-.+
T Consensus 27 s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~-~--~~w~vv~KaLivlH~llreG~~~~l~~ 103 (310)
T 3zym_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-N--SSWVVVFKSLITTHHLMVYGNERFIQY 103 (310)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-C--CchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4688999999999888888888888887777666778899999999999 5 899999999999999999876555433
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.14 E-value=1.5 Score=38.44 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=75.1
Q ss_pred cCHH----HHHHHHHHHhcC----CCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHH
Q psy3857 31 ENWA----LNMEICDIINET----EDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE 102 (349)
Q Consensus 31 ~dw~----~~l~icD~In~~----~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~e 102 (349)
.||. .+..|+.+++.. ...-.+.+.+|+++|.+. .|+++...|+..+..+++..|..|+..+ ..|+..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ 102 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS 102 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence 5885 677788888762 223467899999999414 8999999999999999999999998765 468888
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy3857 103 LYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 103 L~kl~~~k~~~~~~Vk~kil~li~~W~~~f 132 (349)
|.+.+.. +...||+.+...+..+....
T Consensus 103 ll~~l~d---~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 103 LLEKFKE---KKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HHHGGGC---CCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcC---CCHHHHHHHHHHHHHHHHcC
Confidence 8888853 34689999999999987643
No 29
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=91.50 E-value=0.12 Score=42.21 Aligned_cols=102 Identities=9% Similarity=0.109 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcC---chhHHH
Q psy3857 16 VGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNC---NRRFHI 92 (349)
Q Consensus 16 ~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNc---G~~Fh~ 92 (349)
+.+.+...|. ..+ .|-.+...+-.....+.+.+.+|.++|+. ..+..-+..|-|++..++|| |..|..
T Consensus 9 l~~~L~~L~~---s~~---sI~~~s~w~l~~~~~a~~iv~~i~~~l~~---~~~~~KL~~LYLindIl~ns~~~~~~y~~ 79 (135)
T 4fu3_A 9 LEKKLSELSN---SQQ---SVQTLSLWLIHHRKHAGPIVSVWHRELRK---AKSNRKLTFLYLANDVIQNSKRKGPEFTR 79 (135)
T ss_dssp HHHHHHHCCS---STT---HHHHHHHHHHHTGGGHHHHHHHHHHHHHH---SCTTTHHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HHHHHHHccc---cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5566666653 222 34444444444456789999999999994 56667788899999999999 445554
Q ss_pred HhhcHHHHHHHHHHhCCCC-CCChhHHHHHHHHHHHHHHH
Q psy3857 93 LVCSKDFIQELYKLIGPKN-EPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 93 ~i~~k~Fl~eL~kl~~~k~-~~~~~Vk~kil~li~~W~~~ 131 (349)
.+. ..|..++..-+ ..+..+++++..++..|.+.
T Consensus 80 ~f~-----~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 80 EFE-----SVLVDAFSHVAREADEGCKKPLERLLNIWQER 114 (135)
T ss_dssp HHH-----TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHT
T ss_pred HHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 443 22333321000 11345789999999999874
No 30
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=90.38 E-value=2.7 Score=31.21 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy3857 216 NMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYES 289 (349)
Q Consensus 216 n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~~~dee~l~~LL~~ND~L~~al~~Y~~~~~ 289 (349)
++..+-.+|...+|....++. .-+-+|-..|-+|-|.|-.=++.++-. -.+|=++|..+..+|.-|..+++
T Consensus 6 kmd~~L~~l~~aDP~~~~~D~-~el~~LE~~c~~MgplId~kLE~iDrk--h~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQPDL-PELLHLEAMCHQMGPLIDEKLEDIDRK--HSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566888999998876544 456789999999999886666666533 34677899999999999998764
No 31
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=89.84 E-value=0.78 Score=35.43 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCcH
Q psy3857 209 DLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQE 264 (349)
Q Consensus 209 el~~v~~n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~~~de 264 (349)
-++.++..+.+|-+-+.....-..+...+..++.||.++-.|+|+++++++..++.
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~ 60 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDER 60 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778887777666543223344566789999999999999999999986543
No 32
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.43 E-value=6.3 Score=37.39 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHH---------HHHHHHHHhCCCCCCChhHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKD---------FIQELYKLIGPKNEPPIIVQDKVL 122 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~---------Fl~eL~kl~~~k~~~~~~Vk~kil 122 (349)
+.++-|..-+. + ..+.++..||.||..+|.++...|..-+..-. .+..|++++..+...+.+++-..+
T Consensus 202 ~fI~~lyslv~-s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 202 DTIQWLYTLCA-S--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HHHHHHHHGGG-C--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHc-C--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 45556666666 4 88999999999999999998555543222111 356788888655556788999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCC
Q psy3857 123 SLIQSWADAFKDIPNLEGVNQIYQELRSKGIE 154 (349)
Q Consensus 123 ~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~ 154 (349)
.||..-=... ++-..+.++-..|..+|+.
T Consensus 279 tLIN~lL~~a---pd~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 279 TLINKTLAAL---PDQDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHHHHHC---SSHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhcC---CChhHHHHHHHHHHHccHH
Confidence 9988654433 5444477888888888873
No 33
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=84.73 E-value=2.2 Score=35.27 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCC-CC
Q psy3857 35 LNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKN-EP 113 (349)
Q Consensus 35 ~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~-~~ 113 (349)
.|-.+..-+-.....+.+.+..+.++|... +.++...+.-|=|++-++.||-.+...++. ..|-.-|..++..-+ ..
T Consensus 21 sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~-~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~-~~F~~~L~~~~~~~~~~~ 98 (142)
T 2km4_A 21 SISSASKWLLLQYRDAPKVAEMWKEYMLRP-SVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ-DSFGKVAAEVLGRINQEF 98 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHTSS-SSCHHHHHHHHHHHHHHHHHHGGGTCCHHH-HHHHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-CCCccceehhhhhHHHHHHHHhhcCchHHH-HHHHHHHHHHHHHHHHcC
Confidence 344444444444568899999999999931 127778888888999999999654322221 133333333331100 13
Q ss_pred ChhHHHHHHHHHHHHHHH
Q psy3857 114 PIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 114 ~~~Vk~kil~li~~W~~~ 131 (349)
++.+++++..++..|.+.
T Consensus 99 ~~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 99 PRDLKKKLSRVVNILKER 116 (142)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcc
Confidence 678999999999999885
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=83.16 E-value=11 Score=33.57 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCc---hhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q psy3857 50 PKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCN---RRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQ 126 (349)
Q Consensus 50 ~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG---~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~ 126 (349)
....+..|..-|+ + +||.+...||..|..|+.+++ ..|...+ .+.++..|.+++. ++...||....+.+.
T Consensus 144 l~~ll~~l~~~l~-~--k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~---D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 144 NEDMLKDILEHMK-H--KTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVN---DTQPAIRTIGFESFA 216 (249)
T ss_dssp THHHHHHHHHHTT-C--SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C--CChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 5577778888888 5 899999999999999999998 4565544 2378888888884 356789999999999
Q ss_pred HHHHHhcC
Q psy3857 127 SWADAFKD 134 (349)
Q Consensus 127 ~W~~~f~~ 134 (349)
.-...+..
T Consensus 217 ~i~~~vG~ 224 (249)
T 2qk1_A 217 ILIKIFGM 224 (249)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCH
Confidence 99888854
No 35
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=82.98 E-value=6.3 Score=33.29 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHH----------hhc-HHHHHH
Q psy3857 34 ALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHIL----------VCS-KDFIQE 102 (349)
Q Consensus 34 ~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~----------i~~-k~Fl~e 102 (349)
+.|-.|..+.-..-...+-.+..|.+.|+ . ..|.-=+=+|-|+|+.|+||-..|... ++. -.++.+
T Consensus 23 skI~~LT~~A~~nv~~~~~iv~~l~~~ik-k--~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e 99 (157)
T 3clj_A 23 SRIKKLTTYALDHIDIESKIISLIIDYSR-L--CPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGE 99 (157)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHH-H--SCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-h--CCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHH
Confidence 34444444444433456668888999999 4 677788899999999999976544220 100 011222
Q ss_pred HHH-HhCCC-CCCChhHHHHHHHHHHHHHHH
Q psy3857 103 LYK-LIGPK-NEPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 103 L~k-l~~~k-~~~~~~Vk~kil~li~~W~~~ 131 (349)
++. ++..- ...+...|+||..+|..|...
T Consensus 100 ~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~ 130 (157)
T 3clj_A 100 VIQELLSDAIAKSNQDHKEKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Confidence 222 11100 013578999999999999854
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=81.37 E-value=11 Score=33.64 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=71.6
Q ss_pred CcCHH----HHHHHHH-HHhcCC-----CCH-HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCc-hhHH-HHhhc
Q psy3857 30 SENWA----LNMEICD-IINETE-----DGP-KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCN-RRFH-ILVCS 96 (349)
Q Consensus 30 ~~dw~----~~l~icD-~In~~~-----~~~-~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG-~~Fh-~~i~~ 96 (349)
+.+|. ....+.. .++..+ .+. .+.+++|++.|.+. .|+.++..|+..|..+.+..+ ..|. ...
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D--~n~~v~~~A~~al~~la~~l~~~~f~~~y~-- 102 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD--ANIQAVALAAQSVELICDKLKTPGFSKDYV-- 102 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHhcccccccHHHH--
Confidence 45886 4556777 665421 222 57899999999324 899999999999999999888 7776 433
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy3857 97 KDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 97 k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f 132 (349)
..++..|...++.+ ...|++.+...+..|....
T Consensus 103 ~~llp~ll~~l~dk---k~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 103 SLVFTPLLDRTKEK---KPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHc
Confidence 25777777777543 3679999999999999876
No 37
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=80.83 E-value=8.4 Score=35.01 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
.+++..|.+-+. . .|+.++++||.+|+-+.|--.......+- +++++.++++++.+ +.+|.-+.+..+...-.
T Consensus 32 e~~l~~L~~LL~-d--kD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~---dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 32 KRALFLILELAG-E--DDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQE---NEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCST---THHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHh-c--cchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhcc---chhHHHHHHHHHHHHHc
Confidence 457788888887 4 99999999999999999987656665544 69999999999643 57887777777777665
Q ss_pred Hhc-CCCCchhHHHHHHHHHhcC
Q psy3857 131 AFK-DIPNLEGVNQIYQELRSKG 152 (349)
Q Consensus 131 ~f~-~~~~l~~i~~~y~~Lk~~G 152 (349)
..+ +..+|..+.++...+-+.|
T Consensus 105 ~vpL~~~~y~Kl~~aL~dlik~~ 127 (265)
T 3b2a_A 105 DVPMGSKTFLKAAKTLVSLLESP 127 (265)
T ss_dssp TCCBCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Confidence 554 3335666666666655544
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=76.95 E-value=22 Score=30.68 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchh--HHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q psy3857 49 GPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRR--FHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQ 126 (349)
Q Consensus 49 ~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~--Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~ 126 (349)
+....+..|...|+ + +|+.+...++..|..|+.++|.. |+..+ ..++..|.+++. ++...||....+.+.
T Consensus 130 ~~~~ll~~l~~~l~-~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~---D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 130 SLEAQQESIVESLS-N--KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLN---EPDPTVRDSSAEALG 201 (242)
T ss_dssp CHHHHHHHHHHHTT-C--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHT---SSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-C--CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 45667777888888 5 89999999999999999988743 44444 378888888885 345689999988888
Q ss_pred HHHHHhc
Q psy3857 127 SWADAFK 133 (349)
Q Consensus 127 ~W~~~f~ 133 (349)
.-+..++
T Consensus 202 ~l~~~vg 208 (242)
T 2qk2_A 202 TLIKLMG 208 (242)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 8776664
No 39
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=68.48 E-value=21 Score=32.56 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=67.9
Q ss_pred CcCHHHHHHHHHHHhcCC-CCHHHHHHH-------HHHHhhhcCCCCHHHHHHHHHHHHHHHhcC---chhHHHHhhcHH
Q psy3857 30 SENWALNMEICDIINETE-DGPKDAIKA-------IRKRLQQYAGKDYTVIMYTLTVLETCVKNC---NRRFHILVCSKD 98 (349)
Q Consensus 30 ~~dw~~~l~icD~In~~~-~~~~eA~ra-------l~krl~~~~~~n~~~~l~AL~LLd~~vkNc---G~~Fh~~i~~k~ 98 (349)
..||...+.-+|.+...- ..+++++.. +.-|+. . .|+++...+|.+|..++.-. |++|+..-+. -
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d--~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~-~ 132 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-E--TNPAALIKVLELCKVIVELIRDTETPMSQEEVS-A 132 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-S--CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-C--CCHHHHHHHHHHHHHHHHHHHhccccchHHHHH-H
Confidence 358888887777777642 366665444 244777 4 89999999999999887544 5667765432 6
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy3857 99 FIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 99 Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f 132 (349)
|+-.|+..+. ++...||+.+.+++..-..-+
T Consensus 133 ~lP~LveKlG---d~k~~vR~~~r~il~~l~~v~ 163 (266)
T 2of3_A 133 FVPYLLLKTG---EAKDNMRTSVRDIVNVLSDVV 163 (266)
T ss_dssp HHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CChHHHHHHHHHHHHHHHHHC
Confidence 8888877763 244689999998887776544
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=68.32 E-value=24 Score=29.21 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
++..|.+.+. + .++.++..|+..|-.+..+. ......+....++..|++++.. ....|++.++..|...
T Consensus 139 ~i~~L~~ll~-~--~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 139 ALPALVQLLS-S--PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHTT-C--SCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc-C--CCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 5778888888 5 89999999999999998864 4556667777899999999963 3578999998888764
No 41
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=66.41 E-value=10 Score=33.86 Aligned_cols=97 Identities=7% Similarity=0.054 Sum_probs=59.5
Q ss_pred CCcCHHH----HHHHHHHHhcCCC-CHH--------HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHH--
Q psy3857 29 ASENWAL----NMEICDIINETED-GPK--------DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHIL-- 93 (349)
Q Consensus 29 ~~~dw~~----~l~icD~In~~~~-~~~--------eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~-- 93 (349)
..-+|.. +-++...++.... .+. .....++|.++ - .|..++..||.+|..+++.+|..+...
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-D--sN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-D--SNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-C--SSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-c--chHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3447853 4455566655321 122 23567899998 4 899999999999999999987643211
Q ss_pred --hhcHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHHH
Q psy3857 94 --VCSKDFIQELYKL-IGPKNEPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 94 --i~~k~Fl~eL~kl-~~~k~~~~~~Vk~kil~li~~W~~~ 131 (349)
..-..++..|+.- +. .+...++...++.+..|...
T Consensus 96 ~~~~~~~~l~~lveK~l~---~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLT---SSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp HHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHHHHh
Confidence 1112456665533 42 23457888999988888653
No 42
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=65.95 E-value=15 Score=32.79 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHH-HHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHH
Q psy3857 49 GPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFH-ILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQS 127 (349)
Q Consensus 49 ~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh-~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~ 127 (349)
.....+..|..-++ + +||++..-++..|..|+.+.|...- ..-.-+.++..+.+++. +++..||.-.+.++.+
T Consensus 136 ~~~~~~e~l~~~l~-~--Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 SITQSVELVIPFFE-K--KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVE 209 (278)
T ss_dssp SSHHHHHHHGGGGG-C--SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh-c--cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHH
Confidence 34455677777777 5 9999999999999999999775421 11111235556777775 3467899988888776
Q ss_pred HHHHh
Q psy3857 128 WADAF 132 (349)
Q Consensus 128 W~~~f 132 (349)
-+..+
T Consensus 210 ly~~~ 214 (278)
T 4ffb_C 210 IYKVT 214 (278)
T ss_dssp HHTC-
T ss_pred HHHHh
Confidence 66544
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=62.30 E-value=29 Score=31.83 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+-|+ + +++.++..|..+|-.+..+ +......+....++..|+.++..+ +..|++.++..|..-..
T Consensus 168 gi~~L~~lL~-~--~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 168 GFSVLMRAMQ-Q--QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHH-S--SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHc-C--CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHh
Confidence 5667888887 5 8999999999999988877 455666677788999999999643 45799998888876653
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=61.36 E-value=36 Score=28.64 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
++..|.+.|+ + .++.++..|+..|..+..+.. .....+.....+..|++++.. ....|+..++..+....
T Consensus 3 ~i~~L~~~L~-~--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~ 72 (252)
T 4hxt_A 3 DVEKLVKLLT-S--TDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIA 72 (252)
T ss_dssp HHHHHHHHTT-C--SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 4677888888 5 789999999999999988865 455556667899999999964 34788888888877664
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=60.35 E-value=43 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
.++..|.+.|+ + .++.++..|+..|-.+..+. ......+.....+..|++++.. +...|+..+...|..-.
T Consensus 54 g~i~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 54 GALPALVQLLS-S--PNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA 124 (210)
T ss_dssp THHHHHHHHTT-C--SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHcC---CcHHHHHHHHHHHHHHH
Confidence 36778888998 5 89999999999999888654 3444556666788999999963 35688888887776654
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.49 E-value=65 Score=26.42 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy3857 16 VGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVC 95 (349)
Q Consensus 16 ~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~ 95 (349)
...+|....+ +|+..-...+..+-.- +...++..|.+.+. + +++.+...|+..|..+ +
T Consensus 16 ~~~~i~~L~~-----~~~~vr~~A~~~L~~~--~~~~~~~~L~~~l~-~--~~~~vr~~a~~~L~~~------------~ 73 (201)
T 3ltj_A 16 VEMYIKNLQD-----DSYYVRRAAAYALGKI--GDERAVEPLIKALK-D--EDAWVRRAAADALGQI------------G 73 (201)
T ss_dssp HHHHHHHTTC-----SCHHHHHHHHHHHHHH--CCGGGHHHHHHHTT-C--SSHHHHHHHHHHHHHH------------C
T ss_pred hHHHHHHhcC-----CCHHHHHHHHHHHHhc--CChhHHHHHHHHHc-C--CCHHHHHHHHHHHHhh------------C
Confidence 4445554444 3565444444443321 22467888899998 5 8999999988877543 2
Q ss_pred cHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 96 SKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 96 ~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
..+.+..|++.+.. ++..|+..++..+...
T Consensus 74 ~~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 74 DERAVEPLIKALKD---EDGWVRQSAAVALGQI 103 (201)
T ss_dssp CGGGHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHh
Confidence 34677788888852 4568988888887664
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=53.61 E-value=97 Score=25.83 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f 132 (349)
++..|.+.+. + .++.++..|+..|-.+... .......+....++..|++++.. .+..|++.++..|..-....
T Consensus 171 ~i~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 171 GVEVLVKLLT-S--TDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHTT-C--SCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHC-C--CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCC
Confidence 6788888888 5 8999999999999998874 34555566677899999999963 35689999998888877654
Q ss_pred c
Q psy3857 133 K 133 (349)
Q Consensus 133 ~ 133 (349)
.
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 3
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=49.07 E-value=90 Score=28.85 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCc-hhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCN-RRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG-~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
...+..|...++ + .++++..-|+..+-.+...|+ ..+...+ ..++..|++.+.. +...||..+...|....
T Consensus 365 ~~~~~~l~~~l~-~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 365 PHVLPFIKEHIK-N--PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD---PSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHHHHHHHHHTT-C--SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-C--CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 345667777887 5 899999999999999999887 3344333 3677888888853 45789999999999999
Q ss_pred HHhcCCC-CchhHHHHHHHH
Q psy3857 130 DAFKDIP-NLEGVNQIYQEL 148 (349)
Q Consensus 130 ~~f~~~~-~l~~i~~~y~~L 148 (349)
..+...- ...++..++..|
T Consensus 437 ~~~~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 437 ELLPEAAINDVYLAPLLQCL 456 (462)
T ss_dssp HHGGGGCCSTTTHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHH
Confidence 9886421 123455565554
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=47.04 E-value=39 Score=30.90 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHH-HhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRK-RLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~k-rl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+ -|. + +++.++..|+..|-.++.|. ..++..|....-+.-|+++++.. ++..|+++++..|.....
T Consensus 82 ~l~~Lv~~lL~-s--~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLE-A--GAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTT-C--SSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-C--CCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHc
Confidence 5667777 565 5 99999999999999999984 56777777778899999999632 356899988877776653
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=45.33 E-value=74 Score=26.93 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=70.8
Q ss_pred CcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCch
Q psy3857 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDG-----PKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNR 88 (349)
Q Consensus 14 t~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~-----~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~ 88 (349)
..+..++....++.. +.-......++.++...... ...++..|.+-|+ + .++.++..|+..|-.+.... .
T Consensus 12 ~~~~~~~~~L~s~~~-~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~-~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-S--PNEQILQEALWALSNIASGG-N 86 (252)
T ss_dssp CSHHHHHHHHHSSCS-SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-C--SCHHHHHHHHHHHHHHTTSC-H
T ss_pred chHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcCC-H
Confidence 357777777777542 22222233333333221111 1235678888888 5 78999999999999988753 4
Q ss_pred hHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 89 RFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 89 ~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
.+...+.....+..|++++.. +...|+..++..|..-.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhh
Confidence 566677777899999999964 35688888887776663
No 51
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=39.41 E-value=1.1e+02 Score=28.36 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
.++..|.+.+. + .++.++..|...|-.+..++.......+.....+..|+.++.. .+..|+..++..|.....
T Consensus 318 ~~l~~L~~~l~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 318 NIFPALISILQ-T--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV---MDSKIVQVALNGLENILR 390 (450)
T ss_dssp THHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS---SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 34567777887 5 8999999999999888877554444445556788889999863 356899998888877654
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=39.24 E-value=52 Score=27.94 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 54 IKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 54 ~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
...+.+.|+ + .++.++..|+..|..++.. .......+.....+..|++++... ...|+..++..|..-.
T Consensus 14 ~~~~~~~L~-s--~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~ 82 (252)
T 4db8_A 14 LPQMTQQLN-S--DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIA 82 (252)
T ss_dssp HHHHHHHHH-S--SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-C--CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHh
Confidence 455667777 5 7888888888877554444 345555566678888999998642 3678888877776654
No 53
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=39.07 E-value=1.3e+02 Score=26.84 Aligned_cols=91 Identities=9% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhc---HHHHHHHHHHhCCC
Q psy3857 34 ALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCS---KDFIQELYKLIGPK 110 (349)
Q Consensus 34 ~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~---k~Fl~eL~kl~~~k 110 (349)
+.+.=||++.+..--..+.+...|++-|. + ++.. .+.++=.++++||..+...-++ ..+++.|..++...
T Consensus 148 g~i~FIgeLy~~~~l~~~i~~~~l~~Ll~-~--~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~ 220 (260)
T 1hu3_A 148 GNIKFIGELFKLKMLTEAIMHDCVVKLLK-N--HDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKER 220 (260)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHH-S--CSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhC-C--CCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCC
Confidence 44555789999877778877788887777 4 6765 4556666677789887653221 23445555555332
Q ss_pred CCCChhHHHHHHHHHHHHHHHh
Q psy3857 111 NEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 111 ~~~~~~Vk~kil~li~~W~~~f 132 (349)
..+.+||-.|..++..-...+
T Consensus 221 -~ls~Rirfmi~~l~dLR~~~W 241 (260)
T 1hu3_A 221 -KTSSRIRFMLQDVIDLRLCNW 241 (260)
T ss_dssp -SSCHHHHHHHHHHHHHHHTTT
T ss_pred -CCCHHHHHHHHHHHHHHHcCC
Confidence 346777777777766544433
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=35.89 E-value=2.2e+02 Score=28.83 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCc-hhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 50 PKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCN-RRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 50 ~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG-~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
-...+..|...+. + .++++...|+..|-.+...|+ ..+...+ ..++..|++.+. ++...||..++..+..|
T Consensus 364 ~~~~l~~l~~~l~-~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~---d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 364 VPHVLPFIKEHIK-N--PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK---DPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp HHHHHHHHHHHTT-C--SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-C--CChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhC---CCCHHHHHHHHHHHHHH
Confidence 3355667777787 5 899999999999999999998 4444322 356777777774 24578999999999999
Q ss_pred HHHhcC
Q psy3857 129 ADAFKD 134 (349)
Q Consensus 129 ~~~f~~ 134 (349)
...+..
T Consensus 436 ~~~~~~ 441 (876)
T 1qgr_A 436 CELLPE 441 (876)
T ss_dssp HHHCGG
T ss_pred HHhCch
Confidence 988753
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=35.02 E-value=2.5e+02 Score=28.85 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 50 PKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 50 ~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
-...+..|...+. + .++++...|+..|-.++..|+..+...+ ..++..|.+.+. ++...||..+...+...+
T Consensus 357 ~~~l~~~l~~~l~-~--~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~---d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 357 LPHILPLLKELLF-H--HEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLS---DKKALVRSITCWTLSRYA 428 (852)
T ss_dssp HHHHHHHHHHHHT-C--SSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTT---CSSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcC---CCCHHHHHHHHHHHHHHH
Confidence 3456777888887 5 8999999999999999999987554322 456777777774 346789998888877666
Q ss_pred HHhc
Q psy3857 130 DAFK 133 (349)
Q Consensus 130 ~~f~ 133 (349)
..+.
T Consensus 429 ~~~~ 432 (852)
T 4fdd_A 429 HWVV 432 (852)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.32 E-value=58 Score=20.03 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy3857 264 EDFITELLQVNDQLNNLFLRFNRYES 289 (349)
Q Consensus 264 ee~l~~LL~~ND~L~~al~~Y~~~~~ 289 (349)
|+-+++||..|.+|.+.+.|-+.+..
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56788999999999999988877664
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=33.22 E-value=2.3e+02 Score=27.35 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
++..|..-+. + .++.++..|...|-.+..+|.......+.....+.-|+.++.. ++.+|...+++.|..-
T Consensus 359 ~i~~Lv~lL~-~--~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLS-K--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHH-S--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHc-C--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 4556777777 5 8999999999888888887766555566677888889999953 3567888777766544
No 58
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=33.11 E-value=2e+02 Score=26.36 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
.++..|.+.++ + .++.++..|+..|-.+..++ ..+...+.....+..|++++.. ..+..|+..++..+....
T Consensus 107 ~~i~~L~~lL~-~--~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLS-S--EFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTT-C--SCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHc-C--CCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHh
Confidence 46778888888 5 89999999999999988875 3445555556788889999863 235688888877776655
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=32.66 E-value=1.7e+02 Score=27.72 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+.++ + .++.++..|+..|-.+..+... ....+.....+..|++++.. ....|+..+...+..|+.
T Consensus 102 ~i~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLG-S--PVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTT-C--SCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHh
Confidence 5667777787 5 8899999999988888776432 24445667889999999963 346788888888888874
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=32.50 E-value=59 Score=33.45 Aligned_cols=96 Identities=11% Similarity=0.190 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhc-HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCS-KDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~-k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
+.+..|..-|+ + .+.++-++|+.+|..+..|.+...+..|-+ ..=+..|+.+++. ....||...+.+|..-..
T Consensus 122 ~~i~~Ll~lL~-~--~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d---~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLSLLE-E--FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD---SREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHTT-C--CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC---SSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhc-C--ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC---chHHHHHHHHHHHHHHhc
Confidence 55777788888 5 899999999999999999999989988863 3566778888863 346788888888888775
Q ss_pred HhcCCCC----chhHHHHHHHHHhcCC
Q psy3857 131 AFKDIPN----LEGVNQIYQELRSKGI 153 (349)
Q Consensus 131 ~f~~~~~----l~~i~~~y~~Lk~~G~ 153 (349)
.-..-.+ ...|-.++..++.+|.
T Consensus 196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 196 SNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred CCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 4210001 1345666777777775
No 61
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=32.50 E-value=1.1e+02 Score=29.48 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 54 IKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 54 ~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
+..|.+-|. + .++.++..|+..|..+..+++..+...+.....+..|+.++.. .+..|+..++..|.....
T Consensus 373 i~~L~~lL~-~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 373 IGPLVNLLQ-T--AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC---PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHH
Confidence 455667777 5 7899999999999999988777777777777888899999863 346788887777766543
No 62
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=32.37 E-value=1.3e+02 Score=28.10 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
|+..|.+.|. + +++.++..|...|-.|..+.+......|.....+..|++++... ....+++.++..+...+
T Consensus 128 aIp~LV~LL~-s--~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~--~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 128 CMRALVAQLK-S--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHHHGGG-C--SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHC-C--CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 4667888887 5 89999999999999998765556666777778889999975321 24578887777764443
No 63
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=31.88 E-value=1.2e+02 Score=29.15 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCch--hHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNR--RFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~--~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+-|. + .++.++..|+..|..+...++. .....+.....+..|+.++.. .+..|+..++..|.....
T Consensus 384 ~l~~L~~lL~-~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 384 LIPPLVKLLE-V--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI---ADNRIIEVTLDALENILK 457 (530)
T ss_dssp CHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT---CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHh-c--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHH
Confidence 3456677777 5 8999999999999999888765 455555566788889999863 356899988888877765
Q ss_pred H
Q psy3857 131 A 131 (349)
Q Consensus 131 ~ 131 (349)
.
T Consensus 458 ~ 458 (530)
T 1wa5_B 458 M 458 (530)
T ss_dssp H
T ss_pred h
Confidence 4
No 64
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=30.53 E-value=50 Score=24.20 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy3857 201 EQVTKLHKDLEVVQANMAVFNEMLNT 226 (349)
Q Consensus 201 e~~~kl~~el~~v~~n~~lL~emL~~ 226 (349)
+-+.|+..|.++|+.|++.|+|--..
T Consensus 22 e~ikkiiaefdvvke~v~~l~ekakt 47 (95)
T 1xou_B 22 EAIKKIIAEFDVVKESVNELSEKAKT 47 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44778889999999999888776543
No 65
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=30.37 E-value=87 Score=30.22 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCch----------hHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNR----------RFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVL 122 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~----------~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil 122 (349)
++..|..-+. + .++.++..|+..|..++..|.. .+...+.....++.|..+.. ++...|++++.
T Consensus 429 ~l~~L~~ll~-~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~---~~~~~v~~~a~ 502 (530)
T 1wa5_B 429 CIKPLCDLLE-I--ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ---NENDKIYEKAY 502 (530)
T ss_dssp CHHHHHHHTT-T--CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG---CSCHHHHHHHH
T ss_pred CHHHHHHHHh-C--CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHH
Confidence 4566666676 4 7999999999999998887653 24444555566777777764 24567988888
Q ss_pred HHHHHH
Q psy3857 123 SLIQSW 128 (349)
Q Consensus 123 ~li~~W 128 (349)
.+|...
T Consensus 503 ~il~~~ 508 (530)
T 1wa5_B 503 KIIETY 508 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888653
No 66
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=30.12 E-value=61 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy3857 241 TELHATCKAMQERIVQLISK 260 (349)
Q Consensus 241 ~eL~~~ck~~q~~i~~li~~ 260 (349)
+..+..|...|+.++.|+.+
T Consensus 34 e~Iv~eCnavrqALQdLlsE 53 (59)
T 4e18_B 34 ERIVAECNAVRQALQDLLSE 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999986
No 67
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=29.67 E-value=1.9e+02 Score=24.19 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh-cC-cHHHHHHHH-hhhHHHHH
Q psy3857 203 VTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISK-YS-QEDFITELL-QVNDQLNN 279 (349)
Q Consensus 203 ~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~ck~~q~~i~~li~~-~~-dee~l~~LL-~~ND~L~~ 279 (349)
..|+...+=++--++-+| +.-+..++++...+.++-.+|+...-++..+-+. -+ |-..|.++| +..+.|.+
T Consensus 33 A~kv~KniIKi~vKigvl------~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~ 106 (161)
T 3f4m_A 33 AQRVIKDLIKVAIKVAVL------HRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLE 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhee------eecCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHH
Confidence 345555544444444444 3335556667777777777777776665555443 12 555555554 48888888
Q ss_pred HHHHHH
Q psy3857 280 LFLRFN 285 (349)
Q Consensus 280 al~~Y~ 285 (349)
++++|=
T Consensus 107 lv~~HL 112 (161)
T 3f4m_A 107 LVEHHL 112 (161)
T ss_dssp HHTTTS
T ss_pred HHHhhC
Confidence 887663
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=28.26 E-value=1.9e+02 Score=29.00 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 50 PKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 50 ~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
-+.|+..|.+-|. + +++++++.||.-|..++...+. +..+ .++...+...+. ++++..||.+.++++..-
T Consensus 327 ~~~~~~~L~~~L~-~--~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~--~d~d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 327 LVRACNQLGQFLQ-H--RETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALK--TERDVSVRQRAVDLLYAM 396 (621)
T ss_dssp HHHHHHHHHHHSS-C--SCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHT--TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-C--CCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhc--cCCCHhHHHHHHHHHHHH
Confidence 3467888888887 5 8999999999999888876542 1111 133444444442 123456777666666544
No 69
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=28.20 E-value=1.4e+02 Score=28.58 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
.+.+..|.+.|. + .++.++..|+..|..++..........+.....+..|++++... ....|+..++..|...+.
T Consensus 73 ~~~l~~lv~~L~-s--~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVY-S--DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHT-S--SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhC
Confidence 455788888888 5 89999999999998887766544445566668888899988632 125677777666655443
No 70
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=27.78 E-value=3.2e+02 Score=26.34 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
++..|..-+. + .++.++..|...|-.+..+|...-...+.....+.-|+.++.. .+.+|...++..|..-
T Consensus 378 ~i~~Lv~lL~-~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 378 LVPFLVGVLS-K--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHH-S--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhc-C--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 4555666777 5 8888888888888777777655544556667788889999953 3567777777666544
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=27.73 E-value=1.9e+02 Score=28.92 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
.|+..|.+-|. + +++++.+.||.-|..++...+..|. ++...+...+. +++..||.+.++++...
T Consensus 313 ~a~~~L~~~L~-~--~d~~vr~~aL~~L~~i~~~~p~~~~------~~~~~i~~~l~---d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 313 LAINILGRFLL-N--NDKNIRYVALTSLLKTVQTDHNAVQ------RHRSTIVDCLK---DLDVSIKRRAMELSFAL 377 (618)
T ss_dssp HHHHHHHHHHT-C--SSTTTHHHHHHHHHHHHHHHHHHHG------GGHHHHHHGGG---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-C--CCCchHHHHHHHHHHHHhhCHHHHH------HHHHHHHHHcc---CCChhHHHHHHHHHHHH
Confidence 46777888787 5 8899999999988888876544332 23333333332 23345555555554433
No 72
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=27.48 E-value=1.9e+02 Score=28.75 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+.|+ + .++.++..|+..|-.+..+.. .....+.....+..|++++... ...++..++..+..|+.
T Consensus 99 ~i~~Lv~lL~-~--~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLG-S--PVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTT-C--SSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHh-C--CCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHHHh
Confidence 5667777787 5 889999999999988887653 3334455668899999999643 35777777778888874
No 73
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=26.79 E-value=2.3e+02 Score=26.91 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQS 127 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~ 127 (349)
..+..|.+.+. . .++.+...++..|..+++.+|..|.. ..|+..|.++.. +.+..||..+.+.+..
T Consensus 519 ~~~~~l~~~l~-d--~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~---d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 519 HMLPTVLRMAG-D--PVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQ---DQDVDVKYFAQEALTV 584 (588)
T ss_dssp HTHHHHHHGGG-C--SCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-C--CCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcC---CCchhHHHHHHHHHHH
Confidence 34445555565 3 67777778888888888777776543 355555666543 2456777776666543
No 74
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=26.49 E-value=2.1e+02 Score=25.01 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
++..|.+.|. + +++.++..|...|-.+...+ ......|....-+..|++++... .+..|++.+...+...+
T Consensus 53 ~Ip~LV~lL~-s--~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~--~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLK-V--QNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQT--RDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGG-C--CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHc-C--CCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccC--CCHHHHHHHHHHHHHHH
Confidence 5778888888 6 89999999999999998742 35566677778999999999521 34678888877776664
No 75
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=26.23 E-value=1.2e+02 Score=30.65 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQ 126 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~ 126 (349)
++..|.+.|. + +++.++..|...|-.+...++......|....-+..|++++... .+..|++.+...|.
T Consensus 91 ~Ip~LV~LL~-s--~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~ 159 (584)
T 3l6x_A 91 GIPVLVGLLD-H--PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLW 159 (584)
T ss_dssp HHHHHHHGGG-C--SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHH
T ss_pred CcHHHHHHHC-C--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 4667888888 6 89999999999999999876677788888888889999998532 23456666554443
No 76
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=26.03 E-value=2e+02 Score=29.67 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+.|+ + .++.++..|+..|-.|..+.. .....+.....+..|++++.. ....|+..++..+..|+.
T Consensus 235 ~I~~Lv~lL~-~--~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~---~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLG-S--PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTT-C--SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHc-C--CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHHHhc
Confidence 5667777787 5 789999999999888887643 334445556788889999963 346788889999999984
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.91 E-value=2.4e+02 Score=27.34 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++..|.+.|. + +++.++..|...|-.+..+.+......|....-+..|++++... ....|++.++..|.....
T Consensus 244 aIp~LV~LL~-s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s--~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 244 CMRALVAQLK-S--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHGGG-C--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-C--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC--CCHHHHHHHHHHHHHHcc
Confidence 4677888887 5 89999999999998887654455666677777888999986422 346788877777755543
No 78
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=25.54 E-value=2.5e+02 Score=25.72 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHhcC-chhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGK--DYTVIMYTLTVLETCVKNC-NRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQS 127 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~--n~~~~l~AL~LLd~~vkNc-G~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~ 127 (349)
.+.+..|...+. + . ++.+...|+..|..+++.+ +..|...+ ..++..+.+.+... .+...||..++..+..
T Consensus 127 ~~ll~~L~~~l~-~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~-~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 127 PELIPQLVANVT-N--PNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKE-EPSNNVKLAATNALLN 200 (462)
T ss_dssp TTHHHHHHHHHH-C--TTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-c--CCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Confidence 367777777887 4 6 8999999999999999987 44333222 24667777777532 1257899999998888
Q ss_pred HHH
Q psy3857 128 WAD 130 (349)
Q Consensus 128 W~~ 130 (349)
|..
T Consensus 201 ~~~ 203 (462)
T 1ibr_B 201 SLE 203 (462)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 79
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=25.21 E-value=3.5e+02 Score=25.60 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
...+..+.+.++ . .++.+...|+..|..+++.+|..|+. ..++..|.+++. .+...||...+..+.....
T Consensus 440 ~~l~~~l~~~l~-d--~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 440 EKLNSLCMAWLV-D--HVYAIREAATSNLKKLVEKFGKEWAH----ATIIPKVLAMSG---DPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp HHHHHHHHHGGG-C--SSHHHHHHHHHHHHHHHHHHCHHHHH----HHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-C--CcHHHHHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHH
Confidence 356667777777 4 78888888999898888888877652 456777776653 2456788888888888777
Q ss_pred Hh
Q psy3857 131 AF 132 (349)
Q Consensus 131 ~f 132 (349)
.+
T Consensus 510 ~~ 511 (588)
T 1b3u_A 510 VC 511 (588)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 80
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=24.76 E-value=1.5e+02 Score=29.58 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCCh
Q psy3857 36 NMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPI 115 (349)
Q Consensus 36 ~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~ 115 (349)
-+.++.+.+.+++-..-++..|+|-++ + +||.+..+||..|-.+. +. +++ ...+..+.+.+.. +++
T Consensus 91 Yl~~~~~~~~~~e~~~l~in~l~kDL~-~--~n~~vr~lAL~~L~~i~---~~----~~~-~~l~~~l~~~L~~---~~~ 156 (618)
T 1w63_A 91 YLGAMLLLDERQDVHLLMTNCIKNDLN-H--STQFVQGLALCTLGCMG---SS----EMC-RDLAGEVEKLLKT---SNS 156 (618)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHS-C--SSSHHHHHHHHHHHHHC---CH----HHH-HHHHHHHHHHHHS---CCH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcC-C--CCHhHHHHHHHHHHhcC---CH----HHH-HHHHHHHHHHHcC---CCH
Confidence 345666666555555678889999998 5 89999988888775543 11 122 3445666666642 345
Q ss_pred hHHHHHHHHHHHHH
Q psy3857 116 IVQDKVLSLIQSWA 129 (349)
Q Consensus 116 ~Vk~kil~li~~W~ 129 (349)
.||+++...+....
T Consensus 157 ~VRk~A~~al~~l~ 170 (618)
T 1w63_A 157 YLRKKAALCAVHVI 170 (618)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777666555444
No 81
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=23.79 E-value=1.8e+02 Score=23.40 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=43.2
Q ss_pred cCHHH-HHHHHHHHhcCCCCH---HHHHHHHHHHhhhcCCCCHHHHHHHH-------HHHHHHHhcCchhHHH
Q psy3857 31 ENWAL-NMEICDIINETEDGP---KDAIKAIRKRLQQYAGKDYTVIMYTL-------TVLETCVKNCNRRFHI 92 (349)
Q Consensus 31 ~dw~~-~l~icD~In~~~~~~---~eA~ral~krl~~~~~~n~~~~l~AL-------~LLd~~vkNcG~~Fh~ 92 (349)
.+... ..++.++++..+... .++++.+.++|+. ++-...+.++=+ ..|..+|..|..+|..
T Consensus 50 ~~l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~-~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfse 121 (136)
T 3ayh_A 50 ENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNE-FELTKAEILVILNNKPSSVPELYACIEGIEERFKE 121 (136)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTT-TCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTT
T ss_pred chHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHh-cCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCH
Confidence 34433 457899999886555 8999999999995 345555555533 4578888888888864
No 82
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=23.29 E-value=1.5e+02 Score=30.54 Aligned_cols=72 Identities=10% Similarity=-0.019 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy3857 53 AIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAF 132 (349)
Q Consensus 53 A~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f 132 (349)
++..|.+.+. + .++.++..|+..|-.|..+ ......|.....+..|++++.. ....|+..++..+......-
T Consensus 594 ~i~~Lv~lL~-~--~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~---~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 594 TIPLFVQLLY-S--PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp CHHHHHHGGG-C--SCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHc-C--CCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCC
Confidence 3556777777 5 8999999999999888755 5566667766788889999853 35789999999988877543
No 83
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=22.85 E-value=1.1e+02 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 97 KDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 97 k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
++||..|+++.+.. ....+|-+++.+||+..-+
T Consensus 23 k~FL~tLi~las~~-~~spev~~~Vr~LVq~Ll~ 55 (114)
T 2p6v_A 23 XNFLSTLIXLASSG-XQSTETAANVXELVQNLLD 55 (114)
T ss_dssp HHHHHHHHHHHTSS-SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-ccChHHHHHHHHHHHHHHH
Confidence 68999999999752 2345677777777776654
No 84
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=22.68 E-value=3.1e+02 Score=25.69 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~ 131 (349)
.++..|.+.|..+ .++.++..|+..|..|.++. .....+.....+..|++++.. ++..|+..++..+..-...
T Consensus 59 ~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 59 QMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLLH 131 (529)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCc--hhHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcC
Confidence 5788889999832 58999999999999887763 355566667889999999963 3467888888877766543
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=22.48 E-value=2.3e+02 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=51.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 54 IKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 54 ~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
+..|.+.|+ + +++.++..|...|..+..+- ......|.....+..|++++.. +...|+......+..++.
T Consensus 4 l~~lv~~L~-s--~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLS-S--QDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHH-S--SCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHC-C--CCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhc
Confidence 456777787 5 88999999998888776432 3445567777889999999963 346788888887777764
No 86
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=21.77 E-value=2.3e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhc
Q psy3857 98 DFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFK 133 (349)
Q Consensus 98 ~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (349)
..+|.|.|-. +...|+.....+|..|.....
T Consensus 57 k~Vn~LrKh~-----~~~~V~~lAk~Lv~~WK~~v~ 87 (103)
T 1wjt_A 57 VAVNGVRKHC-----SDKEVVSLAKVLIKNWKRLLD 87 (103)
T ss_dssp HHHHHHHHHC-----CCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHccC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 4555565542 345899999999999998874
No 87
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.37 E-value=3.2e+02 Score=21.93 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy3857 16 VGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVC 95 (349)
Q Consensus 16 ~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~ 95 (349)
+..++....+ +|+..-...+..+-.- +..+++..|.+.|. + .++.+...|+..|..+ +
T Consensus 47 ~~~L~~~l~~-----~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~-d--~~~~vr~~a~~aL~~~------------~ 104 (201)
T 3ltj_A 47 VEPLIKALKD-----EDAWVRRAAADALGQI--GDERAVEPLIKALK-D--EDGWVRQSAAVALGQI------------G 104 (201)
T ss_dssp HHHHHHHTTC-----SSHHHHHHHHHHHHHH--CCGGGHHHHHHHTT-C--SSHHHHHHHHHHHHHH------------C
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHhh--CCHHHHHHHHHHHc-C--CCHHHHHHHHHHHHHh------------C
Confidence 4555544433 3555444444444321 22367888888898 5 8999999998887643 3
Q ss_pred cHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 96 SKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 96 ~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
..+.+..|++++. +++..|+..++..+..+.
T Consensus 105 ~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 105 DERAVEPLIKALK---DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 3467777888884 345789988888887663
No 88
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.19 E-value=4e+02 Score=23.57 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=20.7
Q ss_pred HHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q psy3857 77 TVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQ 126 (349)
Q Consensus 77 ~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~ 126 (349)
..+-+||+|.+..=-.+| |.++++ ++..+..+|.+++.+|.
T Consensus 119 qAV~VCiek~~f~kA~ei--------Lkr~~~-~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKI--------LKKHMS-KDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHHTTCHHHHHHH--------HHHHST-TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHH--------HHHHhc-CCCCchHHHHHHHHHHh
Confidence 445679999764322222 334443 22233455666555554
No 89
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.80 E-value=1e+02 Score=19.77 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy3857 241 TELHATCKAMQERIVQLISK 260 (349)
Q Consensus 241 ~eL~~~ck~~q~~i~~li~~ 260 (349)
+.++..|...|+.++.|+++
T Consensus 15 erIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 15 ERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999886
No 90
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.61 E-value=3.4e+02 Score=21.96 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred cHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHh
Q psy3857 15 PVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILV 94 (349)
Q Consensus 15 ~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i 94 (349)
.+..++....+ +|+..=...+..+..- +..+++..|.+.+. + .++.+...|+..|-.+
T Consensus 20 ~~~~L~~~L~~-----~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~-~--~~~~vr~~a~~aL~~~------------ 77 (211)
T 3ltm_A 20 KVEMYIKNLQD-----DSYYVRRAAAYALGKI--GDERAVEPLIKALK-D--EDAWVRRAAADALGQI------------ 77 (211)
T ss_dssp GHHHHHHHTTC-----SSHHHHHHHHHHHHHH--CCGGGHHHHHHHTT-C--SCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHcC-----CCHHHHHHHHHHHHHh--CCccHHHHHHHHHc-C--CCHHHHHHHHHHHHhh------------
Confidence 35666665543 4565444444444331 22467788888888 5 7888888888766443
Q ss_pred hcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy3857 95 CSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSW 128 (349)
Q Consensus 95 ~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W 128 (349)
+..+.+..|++++.. ++..|+..++..+...
T Consensus 78 ~~~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 78 GDERAVEPLIKALKD---EDGWVRQSAAVALGQI 108 (211)
T ss_dssp CCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHh
Confidence 234567777777742 4567888777776554
No 91
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=20.51 E-value=3.7e+02 Score=27.06 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWAD 130 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~ 130 (349)
...+..|.+.++ . .++.+...|+.++..+++.||..|...+ ..++..|.+.+... +.+..||..++..+..-..
T Consensus 638 ~~i~~~l~~~l~-~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 638 ETFSPYLLKALN-Q--VDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNP-NARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHHHHHHHH-C--TTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-c--ccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHH
Q ss_pred Hhc
Q psy3857 131 AFK 133 (349)
Q Consensus 131 ~f~ 133 (349)
.+.
T Consensus 712 ~~~ 714 (861)
T 2bpt_A 712 NIG 714 (861)
T ss_dssp HHG
T ss_pred Hhh
No 92
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.47 E-value=1.2e+02 Score=17.12 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3857 241 TELHATCKAMQERIVQL 257 (349)
Q Consensus 241 ~eL~~~ck~~q~~i~~l 257 (349)
.|||..+..+|.++.++
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666665544
No 93
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=20.26 E-value=3.1e+02 Score=26.41 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q psy3857 51 KDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWA 129 (349)
Q Consensus 51 ~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~ 129 (349)
..++..|.+-|. + .++.++..|+..|-.|..++....+. |.....+..|+.++.. +...|+..++..|....
T Consensus 250 ~~~lp~L~~LL~-~--~~~~v~~~a~~aL~~l~~~~~~~~~~-v~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 250 EQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLGA---TELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHSSCHHHHHH-HHTTTCHHHHHHHHTC---SCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhc-C--CcHHHHHHHHHHHHHhhhhhhhhHHH-HHhccchHHHHHHhcC---CChhHHHHHHHHHHHHH
Confidence 567788888888 5 89999999999999999887655544 5556788899999963 35678888888776653
No 94
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=20.26 E-value=3.5e+02 Score=26.76 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHhhcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy3857 52 DAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADA 131 (349)
Q Consensus 52 eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~ 131 (349)
.++..|.+.|. + +.++.++..|+..|..|.++. .....+.....+..|++++.. +...|+..++..|..-...
T Consensus 56 ~~i~~Lv~~L~-~-~~~~~~~~~A~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~nL~~~ 128 (644)
T 2z6h_A 56 QMVSAIVRTMQ-N-TNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLLH 128 (644)
T ss_dssp HHHHHHHHHHH-S-CCCHHHHHHHHHHHHHHTTSH--HHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHh-c-CCCHHHHHHHHHHHHHHhcCh--hhHHHHHHcCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHhC
Confidence 56888999998 3 258999999999998888763 355566677889999999963 3467888888777766543
Done!