RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3857
(349 letters)
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 189 bits (481), Expect = 1e-60
Identities = 94/149 (63%), Positives = 119/149 (79%), Gaps = 3/149 (2%)
Query: 10 NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
NPF+SPVG +IE ATD +L SE+WALNMEICDIINETE+GPKDA++A++KR+ K++
Sbjct: 7 NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN--KNF 64
Query: 70 TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELY-KLIGPKNEPPIIVQDKVLSLIQSW 128
+M LTVLETCVKNC RFH+LV S+DF++ + + I PKN PP IV DKVL+LIQSW
Sbjct: 65 HEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 124
Query: 129 ADAFKDIPNLEGVNQIYQELRSKGIEFPM 157
ADAF+ P+L GV IY++LR KG+EFPM
Sbjct: 125 ADAFRSSPDLTGVVTIYEDLRRKGLEFPM 153
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 171 bits (434), Expect = 1e-53
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 12 FASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTV 71
F S +E AT +W + ICD IN+ + PK+A AI+K++ +
Sbjct: 2 FRSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS---PNPHS 58
Query: 72 IMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADA 131
Y+L VLE+ VKNC H V +K+ + + ++ P V+ K+L L+Q+WA A
Sbjct: 59 SCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL--ESTPHENVRQKMLELVQTWAYA 116
Query: 132 FKDIPNLEGVNQIYQELRSKGIEFP 156
F+ + + L++KG FP
Sbjct: 117 FRSSDKYQAIKDTMTILKAKGHTFP 141
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 165 bits (419), Expect = 3e-51
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
S + AT+P+ E+W + CD IN+ +GP+ A++ + ++Q + LT
Sbjct: 5 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS---PQEWEALQALT 61
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPII---VQDKVLSLIQSWADAFKD 134
VLE C+KNC RRFH V F+ EL K++ PK + V+ KV+ L+ SW A
Sbjct: 62 VLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL-- 119
Query: 135 IPNLEGVNQIYQELRSKGIEFP 156
P + Y L+ +GI
Sbjct: 120 -PEEAKIKDAYHMLKRQGIVQS 140
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 163 bits (413), Expect = 2e-50
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 18 SKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLT 77
+ ATDP+++ ++W+ C+ +N +GP A + ++Q +Y LT
Sbjct: 4 LWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS---PQEKEALYALT 60
Query: 78 VLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPII---VQDKVLSLIQSWADAFKD 134
VLE C+ +C +FH V F+ EL K++ PK V+ +V+ ++ SW F +
Sbjct: 61 VLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120
Query: 135 IPNLEGVNQIYQELRSKGIEFP 156
+ YQ L+ +GI
Sbjct: 121 DI---KIRDAYQMLKKQGIIKQ 139
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 161 bits (408), Expect = 9e-50
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIM 73
+ ++I AT+P +WA C+ +NE +GP A + + ++Q +
Sbjct: 7 ETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS---PQEWEAI 63
Query: 74 YTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPK---NEPPIIVQDKVLSLIQSWAD 130
LTVLETC+K+C +RFH V F+ EL K++ PK + V++K+L L+ SW
Sbjct: 64 QALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 123
Query: 131 AFKDIPNLEGVNQIYQELRSKGI 153
P + + YQ L+ +GI
Sbjct: 124 GL---PEEVKIAEAYQMLKKQGI 143
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 106 bits (266), Expect = 2e-29
Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 201 EQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISK 260
EQ+ KL +LE+V N+ V +EML L+P Q +D+EL+ EL+ TC+AMQ+R+++LI +
Sbjct: 1 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ 60
Query: 261 YSQEDFITELLQVNDQLNNLFLRFNRYESNR 291
+ E ELL VND LNN+FLR R+E R
Sbjct: 61 IANEQLTEELLIVNDNLNNVFLRHERFERFR 91
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein
Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 90.9 bits (226), Expect = 1e-23
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 203 VTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYS 262
VTK LE V N+ + +EML D EL+ EL C+ + + +L S+
Sbjct: 1 VTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETE 60
Query: 263 Q-EDFITELLQVNDQLNNLFLRFNRYESNR 291
++ + ++LQ +D L+ + + +
Sbjct: 61 DNDNSLGDILQASDNLSRVINSYKTIIEGQ 90
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 90.6 bits (225), Expect = 3e-23
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 195 DERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPG-QEHSSDIELITELHATCKAMQER 253
D++ E+++K +E V N+ + EM+ + G S +L+ EL+ C+ M+
Sbjct: 13 DQKRM-EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPT 71
Query: 254 IVQLISKYSQ-EDFITELLQVNDQLNNLFLRFNRYESNRE 292
+ +L S ++ + E+LQ ND L + + + E
Sbjct: 72 LFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE 111
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 47.6 bits (113), Expect = 1e-07
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 14 SPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIM 73
S V + AT + + NE ++ +R + V+
Sbjct: 2 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTN---SSWVVVF 58
Query: 74 YTLTVLETCVKNCNRRFHILVCSK 97
+L + N RF + S+
Sbjct: 59 KSLITTHHLMVYGNERFIQYLASR 82
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 551
Score = 32.6 bits (74), Expect = 0.064
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 58 RKRLQQYAGKDYTVIMYTLT-VLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPII 116
+ + ++ I+ L +++ F ++ S I K P
Sbjct: 44 SGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQI-NITKKMPFPYY 102
Query: 117 VQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKSKEVA 176
++ +L D F + I RSK I MA + K A
Sbjct: 103 EDQQLGALSWI-LDYFHGNSEGSIIQDILVGERSKLIL------KCMAFLEPFAKEISTA 155
Query: 177 SSHPVQRSKVPMG 189
+ P ++ M
Sbjct: 156 KNAPYEKGSSGMN 168
>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 118
Score = 30.5 bits (69), Expect = 0.11
Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 39 ICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVL------ETCVKNCNRRFHI 92
+II++ + + + I K + G + + ++ +T + +R +
Sbjct: 18 AFEIISDGDFTKDEVKELIWKSSLEVLG-ETGTAIVKPWLIKFDPNTKTGIVRSDREYVE 76
Query: 93 LVCS 96
+
Sbjct: 77 YLRF 80
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 28.6 bits (64), Expect = 0.81
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 263 QEDFITELLQVNDQLNNLFLRFNRYESNREAAIGKQNPDAASKLSKKPDV 312
QE + ++ +L + ++Y S R DA +K +K+P V
Sbjct: 111 QEKVFELMTSLHTKLEGFHTQISKYFSERG--------DAVTKAAKQPHV 152
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 27.5 bits (61), Expect = 1.1
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 11/122 (9%)
Query: 37 MEIC-DI---INETEDGPKD-AIKAIRKRLQQYAGKDYTVIMYT---LTVLETCVKNCNR 88
M I D I E I + L+ + + +I+++ +L+ ++ C
Sbjct: 1 MTIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRA 60
Query: 89 R---FHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIY 145
R F+ + ++ K + + + D+ + I W ++ I + IY
Sbjct: 61 RGLEFYAANKDYPEEERDHQGFSRKLKADLFIDDRNVGGIPDWGIIYEMIKEKKTFADIY 120
Query: 146 QE 147
+
Sbjct: 121 SQ 122
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.7 bits (58), Expect = 3.5
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 23/124 (18%)
Query: 36 NMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVC 95
++ I I+ A + V +Y +E + + +
Sbjct: 98 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLY---- 153
Query: 96 SKDFIQELYKLIG------PKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELR 149
K + + G P + V++ L + + V QI L
Sbjct: 154 KKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDA-------------VKQIIDYLD 200
Query: 150 SKGI 153
+KG
Sbjct: 201 TKGY 204
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 25.7 bits (56), Expect = 4.1
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 195 DERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDI-----ELITELHATCKA 249
+E++T L +Q + ++ +D+ +LI + + +
Sbjct: 14 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 73
Query: 250 MQERIVQLISKYSQ 263
+ ++ L K S
Sbjct: 74 ITAKMKGLKGKVSD 87
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 307
Score = 25.5 bits (56), Expect = 9.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 48 DGPKDAIKAIRKRLQQY 64
DGP I+ +RK L+
Sbjct: 1 DGPAFGIEGVRKMLEIK 17
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 24.6 bits (53), Expect = 9.0
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 195 DERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDI-----ELITELHATCKA 249
E+ +DL VQ + L + + +L + +
Sbjct: 15 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 74
Query: 250 MQERIVQLISKYSQ 263
+Q+R+ Q + + +
Sbjct: 75 IQQRLAQFVDHWKE 88
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 25.9 bits (56), Expect = 9.7
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 185 KVPMGAAGDHDERLTPEQVTKLHKD----LEVVQANMAVFNEMLNTLIPGQEHSSDIELI 240
KV + + G +RLTP +L D + + + F + +E D+ +
Sbjct: 14 KVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKM------RERGIDVLEM 67
Query: 241 TELHATCKAMQERIVQLISKYSQEDFITELLQ 272
L E + ++ + D + L
Sbjct: 68 HNLLTETIQNPEALKWILDRKITADSVGLGLT 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,242,426
Number of extensions: 57870
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 20
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)