Query psy3858
Match_columns 180
No_of_seqs 197 out of 1215
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:14:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 1.2E-39 2.5E-44 265.4 5.2 125 56-180 4-133 (292)
2 KOG2156|consensus 100.0 1.1E-38 2.3E-43 267.3 7.8 158 22-180 209-368 (662)
3 KOG2158|consensus 100.0 1.5E-30 3.2E-35 215.9 4.7 117 59-180 173-290 (565)
4 KOG2157|consensus 99.9 6.4E-27 1.4E-31 199.8 10.5 159 22-180 87-275 (497)
5 KOG2155|consensus 99.9 4.7E-23 1E-27 170.7 3.8 156 21-180 314-478 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 98.8 1.2E-08 2.6E-13 82.1 8.2 95 70-172 16-138 (262)
7 KOG2156|consensus 98.6 1.9E-08 4.1E-13 86.1 2.3 57 1-57 243-300 (662)
8 KOG2158|consensus 98.4 8.6E-08 1.9E-12 81.1 0.9 49 4-55 172-220 (565)
9 PF08443 RimK: RimK-like ATP-g 98.3 5.8E-07 1.3E-11 68.9 2.9 71 94-172 18-97 (190)
10 PLN02941 inositol-tetrakisphos 98.3 2E-06 4.4E-11 71.2 6.1 108 59-172 94-205 (328)
11 PF03133 TTL: Tubulin-tyrosine 98.1 1.8E-07 3.9E-12 76.2 -2.2 55 2-56 5-59 (292)
12 PF02955 GSH-S_ATP: Prokaryoti 98.0 1.3E-05 2.7E-10 60.8 5.9 73 92-172 10-91 (173)
13 PRK05246 glutathione synthetas 97.9 2.4E-05 5.3E-10 64.5 6.7 72 93-172 134-214 (316)
14 PRK12458 glutathione synthetas 97.8 8.6E-05 1.9E-09 62.0 7.4 74 93-172 140-221 (338)
15 TIGR01380 glut_syn glutathione 97.7 0.00018 4E-09 59.3 8.5 72 93-172 133-213 (312)
16 PF13535 ATP-grasp_4: ATP-gras 97.7 8.3E-05 1.8E-09 55.7 5.6 87 70-171 2-99 (184)
17 COG0189 RimK Glutathione synth 97.7 5.6E-05 1.2E-09 62.6 4.9 74 93-173 133-215 (318)
18 PRK10446 ribosomal protein S6 97.7 7.2E-05 1.6E-09 61.2 5.5 73 94-172 114-193 (300)
19 TIGR00768 rimK_fam alpha-L-glu 97.6 0.00012 2.6E-09 58.6 5.7 72 94-172 103-184 (277)
20 TIGR02144 LysX_arch Lysine bio 97.3 0.00062 1.3E-08 54.8 6.6 71 94-172 102-183 (280)
21 PRK12767 carbamoyl phosphate s 97.3 0.00085 1.8E-08 55.2 7.0 71 94-171 126-200 (326)
22 PF14403 CP_ATPgrasp_2: Circul 97.1 0.00049 1.1E-08 59.2 4.0 66 92-158 308-387 (445)
23 PRK06849 hypothetical protein; 97.0 0.003 6.5E-08 53.5 8.0 63 94-157 131-197 (389)
24 TIGR02291 rimK_rel_E_lig alpha 96.9 0.0026 5.6E-08 52.7 6.3 62 68-138 33-97 (317)
25 PRK02471 bifunctional glutamat 96.7 0.0036 7.7E-08 57.6 6.4 70 94-172 503-582 (752)
26 TIGR03103 trio_acet_GNAT GNAT- 96.7 0.0029 6.3E-08 56.2 5.0 68 94-172 312-387 (547)
27 PRK14016 cyanophycin synthetas 96.6 0.0037 7.9E-08 57.3 5.4 69 94-172 229-305 (727)
28 PF02655 ATP-grasp_3: ATP-gras 96.5 0.0013 2.7E-08 49.1 1.5 40 116-155 31-71 (161)
29 COG0439 AccC Biotin carboxylas 96.5 0.0094 2E-07 51.6 6.8 65 92-157 129-206 (449)
30 KOG2157|consensus 96.4 0.0056 1.2E-07 53.5 4.8 35 2-36 125-160 (497)
31 PRK01372 ddl D-alanine--D-alan 96.3 0.0064 1.4E-07 49.5 4.7 60 94-155 113-179 (304)
32 TIGR01435 glu_cys_lig_rel glut 96.2 0.013 2.9E-07 53.6 6.6 71 94-173 490-570 (737)
33 PF14397 ATPgrasp_ST: Sugar-tr 96.1 0.015 3.2E-07 47.5 6.1 114 62-175 16-150 (285)
34 PRK07206 hypothetical protein; 96.1 0.017 3.6E-07 49.2 6.3 63 94-157 123-201 (416)
35 PRK08462 biotin carboxylase; V 95.9 0.026 5.7E-07 48.6 7.0 43 115-157 153-208 (445)
36 TIGR01205 D_ala_D_alaTIGR D-al 95.9 0.015 3.3E-07 47.5 5.0 51 115-173 145-202 (315)
37 PRK08654 pyruvate carboxylase 95.8 0.034 7.4E-07 48.9 7.0 43 115-157 151-206 (499)
38 PF15632 ATPgrasp_Ter: ATP-gra 95.6 0.044 9.6E-07 45.7 6.7 64 93-157 121-209 (329)
39 TIGR02068 cya_phycin_syn cyano 95.5 0.024 5.1E-07 53.1 5.3 69 94-172 228-304 (864)
40 PRK08463 acetyl-CoA carboxylas 95.4 0.058 1.3E-06 47.1 7.0 43 115-157 151-206 (478)
41 TIGR01161 purK phosphoribosyla 95.4 0.025 5.4E-07 47.2 4.6 61 94-156 113-179 (352)
42 PRK01966 ddl D-alanyl-alanine 95.3 0.027 5.9E-07 46.8 4.6 41 115-155 161-208 (333)
43 PRK02186 argininosuccinate lya 95.3 0.035 7.5E-07 52.1 5.8 62 94-157 122-191 (887)
44 TIGR00514 accC acetyl-CoA carb 95.2 0.061 1.3E-06 46.5 6.7 57 100-157 137-206 (449)
45 PRK14571 D-alanyl-alanine synt 95.2 0.028 6.1E-07 45.8 4.3 41 115-155 124-171 (299)
46 PRK12833 acetyl-CoA carboxylas 95.1 0.072 1.6E-06 46.4 6.8 43 115-157 154-209 (467)
47 TIGR01235 pyruv_carbox pyruvat 94.9 0.082 1.8E-06 50.9 6.9 55 102-157 139-206 (1143)
48 PRK13790 phosphoribosylamine-- 94.9 0.069 1.5E-06 45.3 5.9 42 115-156 101-151 (379)
49 PRK12999 pyruvate carboxylase; 94.7 0.089 1.9E-06 50.7 6.8 57 100-157 141-210 (1146)
50 TIGR01142 purT phosphoribosylg 94.6 0.04 8.7E-07 46.3 3.8 61 94-156 116-187 (380)
51 PRK08591 acetyl-CoA carboxylas 94.6 0.13 2.7E-06 44.4 6.9 43 115-157 151-206 (451)
52 TIGR01369 CPSaseII_lrg carbamo 94.3 0.098 2.1E-06 50.1 6.0 61 94-156 684-753 (1050)
53 PRK13277 5-formaminoimidazole- 94.2 0.069 1.5E-06 45.0 4.3 50 116-171 152-217 (366)
54 PRK00885 phosphoribosylamine-- 94.2 0.12 2.6E-06 44.2 5.9 62 94-157 117-191 (420)
55 PRK07178 pyruvate carboxylase 94.1 0.17 3.6E-06 44.2 6.7 43 115-157 150-205 (472)
56 PRK14568 vanB D-alanine--D-lac 94.1 0.064 1.4E-06 44.7 3.9 41 115-155 164-211 (343)
57 TIGR00877 purD phosphoribosyla 93.9 0.29 6.3E-06 41.8 7.7 42 116-157 139-193 (423)
58 PRK10507 bifunctional glutathi 93.9 0.44 9.5E-06 43.0 8.9 54 118-172 529-588 (619)
59 PRK05586 biotin carboxylase; V 93.9 0.17 3.8E-06 43.7 6.3 43 115-157 151-206 (447)
60 PRK06395 phosphoribosylamine-- 93.8 0.18 4E-06 43.5 6.4 42 116-157 141-193 (435)
61 PRK14569 D-alanyl-alanine synt 93.7 0.073 1.6E-06 43.5 3.6 41 115-155 129-175 (296)
62 PRK13278 purP 5-formaminoimida 93.7 0.083 1.8E-06 44.6 3.9 39 117-155 150-200 (358)
63 PHA02117 glutathionylspermidin 93.6 0.26 5.6E-06 42.2 6.7 54 118-172 309-367 (397)
64 PRK06111 acetyl-CoA carboxylas 93.5 0.27 5.8E-06 42.3 6.8 43 115-157 151-206 (450)
65 PRK09288 purT phosphoribosylgl 93.5 0.1 2.2E-06 44.1 4.1 41 115-155 148-199 (395)
66 PRK06019 phosphoribosylaminoim 93.4 0.12 2.6E-06 43.6 4.5 60 94-155 115-180 (372)
67 PRK12815 carB carbamoyl phosph 93.3 0.19 4.1E-06 48.3 5.9 60 94-155 685-751 (1068)
68 PRK14572 D-alanyl-alanine synt 93.0 0.13 2.8E-06 43.0 4.1 41 115-155 170-217 (347)
69 PRK05294 carB carbamoyl phosph 93.0 0.22 4.9E-06 47.7 6.1 62 94-157 684-754 (1066)
70 COG1821 Predicted ATP-utilizin 92.8 0.053 1.2E-06 43.4 1.3 44 115-164 137-184 (307)
71 PF01071 GARS_A: Phosphoribosy 92.5 0.28 6.1E-06 37.8 4.9 55 102-156 24-91 (194)
72 PF02786 CPSase_L_D2: Carbamoy 92.2 0.41 9E-06 37.3 5.6 44 115-158 37-93 (211)
73 PF07478 Dala_Dala_lig_C: D-al 92.1 0.18 3.9E-06 39.0 3.5 41 115-155 32-79 (203)
74 PRK14570 D-alanyl-alanine synt 91.8 0.44 9.6E-06 40.2 5.8 42 114-155 169-217 (364)
75 PRK05784 phosphoribosylamine-- 91.7 0.64 1.4E-05 40.9 6.8 59 97-157 127-208 (486)
76 COG2308 Uncharacterized conser 90.7 0.74 1.6E-05 39.7 6.0 110 59-175 311-440 (488)
77 TIGR02712 urea_carbox urea car 90.4 0.45 9.8E-06 46.3 5.0 43 115-157 149-204 (1201)
78 COG0754 Gsp Glutathionylspermi 89.9 0.52 1.1E-05 39.6 4.3 75 70-157 263-343 (387)
79 PRK13789 phosphoribosylamine-- 89.2 0.54 1.2E-05 40.6 4.1 54 103-157 131-197 (426)
80 PRK06524 biotin carboxylase-li 87.1 2.5 5.4E-05 37.3 6.9 41 115-155 180-226 (493)
81 PRK05294 carB carbamoyl phosph 86.4 1.8 3.8E-05 41.8 6.1 61 94-156 143-212 (1066)
82 COG4770 Acetyl/propionyl-CoA c 85.9 0.65 1.4E-05 41.3 2.7 93 65-158 80-207 (645)
83 TIGR01369 CPSaseII_lrg carbamo 85.7 2 4.4E-05 41.3 6.1 62 94-157 142-212 (1050)
84 PLN02257 phosphoribosylamine-- 85.4 2 4.4E-05 37.2 5.5 42 116-157 137-191 (434)
85 KOG0238|consensus 82.9 1 2.2E-05 39.7 2.5 95 64-159 75-204 (670)
86 COG1038 PycA Pyruvate carboxyl 82.9 1.5 3.1E-05 40.9 3.6 109 51-160 70-215 (1149)
87 COG3919 Predicted ATP-grasp en 82.7 0.89 1.9E-05 37.5 2.0 59 93-155 128-200 (415)
88 COG2232 Predicted ATP-dependen 82.4 0.81 1.8E-05 38.2 1.7 38 115-155 148-185 (389)
89 PLN02735 carbamoyl-phosphate s 82.0 1.9 4.1E-05 41.7 4.3 62 94-156 159-229 (1102)
90 PF04174 CP_ATPgrasp_1: A circ 81.5 0.63 1.4E-05 38.8 0.8 86 59-151 233-330 (330)
91 KOG0369|consensus 80.6 1.5 3.2E-05 40.1 2.8 106 51-160 96-241 (1176)
92 PLN02948 phosphoribosylaminoim 79.7 2.7 5.9E-05 37.8 4.3 42 115-156 155-204 (577)
93 PLN02735 carbamoyl-phosphate s 78.3 1.8 3.9E-05 41.9 2.8 43 115-157 736-787 (1102)
94 PRK12815 carB carbamoyl phosph 77.0 3.5 7.6E-05 39.8 4.4 62 94-157 143-213 (1068)
95 COG0027 PurT Formate-dependent 66.7 22 0.00047 29.8 6.1 66 98-173 132-208 (394)
96 COG1759 5-formaminoimidazole-4 65.9 6.1 0.00013 32.9 2.8 41 116-156 150-204 (361)
97 PF05770 Ins134_P3_kin: Inosit 64.5 6.4 0.00014 32.6 2.7 65 93-157 114-182 (307)
98 PF02222 ATP-grasp: ATP-grasp 63.8 12 0.00025 28.2 3.9 41 115-155 27-73 (172)
99 KOG3895|consensus 61.5 6.9 0.00015 33.1 2.4 106 51-169 172-292 (488)
100 PRK14573 bifunctional D-alanyl 60.6 7.1 0.00015 36.5 2.6 41 115-155 609-656 (809)
101 COG0151 PurD Phosphoribosylami 53.3 45 0.00098 28.9 6.0 52 103-155 126-190 (428)
102 PF02750 Synapsin_C: Synapsin, 42.2 31 0.00067 26.8 3.1 88 69-169 8-103 (203)
103 KOG3490|consensus 32.7 11 0.00023 26.1 -0.7 30 3-32 67-97 (111)
104 COG0458 CarB Carbamoylphosphat 32.6 49 0.0011 28.5 3.1 41 115-155 149-198 (400)
105 KOG0782|consensus 32.4 15 0.00033 33.1 0.0 38 114-152 350-387 (1004)
106 PF15327 Tankyrase_bdg_C: Tank 28.0 27 0.00058 26.4 0.7 13 3-15 97-109 (177)
107 KOG3288|consensus 21.8 63 0.0014 26.2 1.8 56 118-179 170-230 (307)
108 PF08442 ATP-grasp_2: ATP-gras 21.5 58 0.0013 25.2 1.5 43 94-139 18-66 (202)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.2e-39 Score=265.36 Aligned_cols=125 Identities=38% Similarity=0.692 Sum_probs=63.6
Q ss_pred hcc-cccccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE
Q psy3858 56 YNR-EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI 134 (180)
Q Consensus 56 ~~~-q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l 134 (180)
+.+ |+||||||+.+||+|+.|+++++++.+..+..++|+|+||.||.|.++|..++.+.+.+.||+||+++++|+||++
T Consensus 4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~l 83 (292)
T PF03133_consen 4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIKL 83 (292)
T ss_dssp -CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHHHHTTS---EEEEES-------EEE
T ss_pred CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCcee
Confidence 455 9999999999999999999999999998888899999999999999999998888778899999999999999999
Q ss_pred eCCCCccc----ccCCceEEeeecCCccccCCceeEEEEEEEeeeecCCC
Q psy3858 135 LNFIPEHE----VMDQDASCQVYLSNVLLINGFKFDLRVYVLMTSKPNPT 180 (180)
Q Consensus 135 ~~~~~~~~----~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlvts~~Pl~ 180 (180)
++++.+.. ....++|||+||+||+||+|||||||+||||||++||+
T Consensus 84 ~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~ 133 (292)
T PF03133_consen 84 FNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLR 133 (292)
T ss_dssp ES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--
T ss_pred cCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeecccee
Confidence 99966544 25678999999999999999999999999999999985
No 2
>KOG2156|consensus
Probab=100.00 E-value=1.1e-38 Score=267.32 Aligned_cols=158 Identities=27% Similarity=0.426 Sum_probs=144.7
Q ss_pred HHHHHHhhhhhCCCccccCCccccCcccchhhhhhcc-cccccCCCCccccchHhHHHHHHHHHhhCC-CCCCcccccCC
Q psy3858 22 LAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNR-EHMNHFPGMANLESKAILAYHLNRMKYFFP-DEYNIFPKSWS 99 (180)
Q Consensus 22 l~~~l~~m~~~~~~~~~~~p~~W~~~~~~~~~~~~~~-q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~-~~~~~~P~t~~ 99 (180)
+.+.|.+.|...++..++|...|.-...+-.+.++++ |+||||||+..|++||.|++++.+.+..++ +++.|+|.||+
T Consensus 209 v~~vl~~sgfkivk~n~dw~g~Wg~h~ksp~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyi 288 (662)
T KOG2156|consen 209 VRQVLANSGFKIVKVNDDWMGVWGHHLKSPSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYI 288 (662)
T ss_pred HHHHHHhcccEEecccchHHHHhhhhcCCchhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeee
Confidence 4455567777788899999999998878888899999 999999999999999999999999888886 49999999999
Q ss_pred CcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecCCccccCCceeEEEEEEEeeeecCC
Q psy3858 100 LPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLSNVLLINGFKFDLRVYVLMTSKPNP 179 (180)
Q Consensus 100 lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlvts~~Pl 179 (180)
||.|.++|..+.+++....||+||.+++||-||+++++.++.. ...+.|||+||++|+||+|.|||+|+||+|||++||
T Consensus 289 lP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~p-k~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPL 367 (662)
T KOG2156|consen 289 LPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFP-KDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPL 367 (662)
T ss_pred ccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCC-CcccHHHHHHhhcceeecCcceeEEEEEEEeecCce
Confidence 9999999999999888889999999999999999999987654 566899999999999999999999999999999999
Q ss_pred C
Q psy3858 180 T 180 (180)
Q Consensus 180 ~ 180 (180)
|
T Consensus 368 R 368 (662)
T KOG2156|consen 368 R 368 (662)
T ss_pred E
Confidence 7
No 3
>KOG2158|consensus
Probab=99.96 E-value=1.5e-30 Score=215.95 Aligned_cols=117 Identities=38% Similarity=0.644 Sum_probs=106.5
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCC
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFI 138 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~ 138 (180)
|++|||||+.+++ |+.|. |..|.+.+|++|.|+|.+|.||.++..|.++.+. ...+||+||+.|++|.||.+++++
T Consensus 173 qrvn~fPgm~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~-~KrtfivkpDsgaqg~giylisDi 248 (565)
T KOG2158|consen 173 QRENNFPGMREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEI-MKRTFIVKPDSGAQGSGIYLISDI 248 (565)
T ss_pred hhhhcCchHHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHHHHHH-hcccEEECCCCCCCCcceeeechh
Confidence 9999999999999 99999 9999999999999999999999999999887543 345999999999999999999998
Q ss_pred CcccccCCceEEeeecCCcccc-CCceeEEEEEEEeeeecCCC
Q psy3858 139 PEHEVMDQDASCQVYLSNVLLI-NGFKFDLRVYVLMTSKPNPT 180 (180)
Q Consensus 139 ~~~~~~~~~~vvQ~YI~~P~Li-~g~KfD~R~yvlvts~~Pl~ 180 (180)
.+.. ..+..+||+||..|||| |+.|||+|+|+|++|+|||+
T Consensus 249 r~~g-~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPls 290 (565)
T KOG2158|consen 249 REKG-EYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLS 290 (565)
T ss_pred hhhh-HHHHHHHHHHhcccccccccceeeeeeeeeeeccCcce
Confidence 7654 23358999999999999 99999999999999999985
No 4
>KOG2157|consensus
Probab=99.94 E-value=6.4e-27 Score=199.77 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=126.7
Q ss_pred HHHHHHhh-hhhCCC-ccccCCccccC-cccchhhhhhcc--cccccCCCCccccchHhHHHHHHHHHhhCCC-------
Q psy3858 22 LAYHLNRM-KYFFPD-EYNIFPKSWSL-PRQWKEVISYNR--EHMNHFPGMANLESKAILAYHLNRMKYFFPD------- 89 (180)
Q Consensus 22 l~~~l~~m-~~~~~~-~~~~~p~~W~~-~~~~~~~~~~~~--q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~------- 89 (180)
+.+.+... ||.... .-+.+...|.. .........+.+ |++||||+..+|++|+.+++++.+++..++.
T Consensus 87 ~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~~~e~~~~~~~~ 166 (497)
T KOG2157|consen 87 LLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLALLERSRLPKAQ 166 (497)
T ss_pred HHHHHHhhcceeeecccccceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHHhccccccchhh
Confidence 33444333 554333 45566666776 222233334455 9999999999999999999999999999865
Q ss_pred -----CCCcccccCCCcchHHHHHHHHHh-CCCceEEEcCCCCCCCCCEEEeCCCCc------------ccccCCceEEe
Q psy3858 90 -----EYNIFPKSWSLPRQWKEVISYNRE-HADETLILKPTRGAEGKGIKILNFIPE------------HEVMDQDASCQ 151 (180)
Q Consensus 90 -----~~~~~P~t~~lp~e~~~f~~~~~~-~~~~~wI~KP~~~~~G~GI~l~~~~~~------------~~~~~~~~vvQ 151 (180)
..++.|.++.+|.|...+...+.+ ...+.||+||.+.++|+||.+++.+++ .....+.++||
T Consensus 167 ~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~ 246 (497)
T KOG2157|consen 167 LEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVS 246 (497)
T ss_pred cccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceee
Confidence 379999999999999999877665 678899999999999999999987544 11346779999
Q ss_pred eecCCccccCCceeEEEEEEEeeeecCCC
Q psy3858 152 VYLSNVLLINGFKFDLRVYVLMTSKPNPT 180 (180)
Q Consensus 152 ~YI~~P~Li~g~KfD~R~yvlvts~~Pl~ 180 (180)
+||++|+||+|+|||||.|||||+++||.
T Consensus 247 ~yi~~plli~~~KfDlR~~vlvt~~~pl~ 275 (497)
T KOG2157|consen 247 AYIDRPLLIGGHKFDLRQYVLVTHFDPLL 275 (497)
T ss_pred eeccCccccCCceeeeeEEEEeecccchh
Confidence 99999999999999999999999999984
No 5
>KOG2155|consensus
Probab=99.87 E-value=4.7e-23 Score=170.75 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=129.1
Q ss_pred HHHHHHHhhhhhCCCccccCCccccC--cccchhhhhhcc-cccccCCCCccccchHhHHHHHHHHHhhCCCCCCccccc
Q psy3858 21 ILAYHLNRMKYFFPDEYNIFPKSWSL--PRQWKEVISYNR-EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKS 97 (180)
Q Consensus 21 ~l~~~l~~m~~~~~~~~~~~p~~W~~--~~~~~~~~~~~~-q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t 97 (180)
-++.+|.+=.....++....+..|.. -.++.++....| +.+|+||-...|+-|+.|+...++ .+...+|+|.|
T Consensus 314 Qv~e~Lt~p~f~~t~~~kdADilw~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r----~~g~~~Wlq~T 389 (631)
T KOG2155|consen 314 QVTEHLTNPKFEYTDDIKDADILWMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR----DPGKNDWLQLT 389 (631)
T ss_pred HHHHhccCCceEeccCccccceeeehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh----cCCCCcccccc
Confidence 35666666666667777788888997 234556666678 999999999999999999987654 24456799999
Q ss_pred CCCcchHHHHHHHHH----hCCCceEEEcCCCCCCCCCEEEeCCCCccc--ccCCceEEeeecCCccccCCceeEEEEEE
Q psy3858 98 WSLPRQWKEVISYNR----EHADETLILKPTRGAEGKGIKILNFIPEHE--VMDQDASCQVYLSNVLLINGFKFDLRVYV 171 (180)
Q Consensus 98 ~~lp~e~~~f~~~~~----~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~--~~~~~~vvQ~YI~~P~Li~g~KfD~R~yv 171 (180)
|.|.+++.+|.+++. .+..+.||+||++.+||-...+.+++..+. ..+++-|||+||++|+|..|-|||+|..|
T Consensus 390 yNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDlRYiV 469 (631)
T KOG2155|consen 390 YNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDLRYIV 469 (631)
T ss_pred cccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccceEEEE
Confidence 999999999998764 245789999999999999999999976543 35779999999999999988899999999
Q ss_pred EeeeecCCC
Q psy3858 172 LMTSKPNPT 180 (180)
Q Consensus 172 lvts~~Pl~ 180 (180)
|+.|++||+
T Consensus 470 llrsi~Pl~ 478 (631)
T KOG2155|consen 470 LLRSIAPLT 478 (631)
T ss_pred EEccccchh
Confidence 999999986
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.85 E-value=1.2e-08 Score=82.13 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=67.2
Q ss_pred ccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCcc--------
Q psy3858 70 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEH-------- 141 (180)
Q Consensus 70 l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~-------- 141 (180)
+..|-..++.|.+ .+..-.|+|+|..+.. .+.+.+.+.+ -+.-++||+.|++|+||..+......
T Consensus 16 ~~~Kw~v~~~L~~----~~~l~~~LP~T~~~~~-~~~l~~~L~~--y~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 16 FFDKWEVYKALSR----DPELRPYLPETELLTS-FEDLREMLNK--YKSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCHHHHHHHHHc----CCcchhhCCCceEcCC-HHHHHHHHHH--CCEEEEEeCCCCCCccEEEEEEeCCEEEEEEccC
Confidence 4678888877765 2445689999988843 2333333332 24556699999999999888763210
Q ss_pred ------c--------------ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 142 ------E--------------VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 142 ------~--------------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
. ...+.||||++|+ -..++|+.||+|+.|-
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~Rvlvq 138 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQ 138 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEE
Confidence 0 2456899999996 6678999999999875
No 7
>KOG2156|consensus
Probab=98.60 E-value=1.9e-08 Score=86.06 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=50.5
Q ss_pred CCCCceeccCCCCCcchhhhHHHHHHHhhhhhCCC-ccccCCccccCcccchhhhhhc
Q psy3858 1 MSLHHRVNHFPGMANLESKAILAYHLNRMKYFFPD-EYNIFPKSWSLPRQWKEVISYN 57 (180)
Q Consensus 1 ~~~~q~vn~fp~~~~~~~k~~l~~~l~~m~~~~~~-~~~~~p~~W~~~~~~~~~~~~~ 57 (180)
|.+||+||||||...|+||+.|++++.+++..+.. ++++.|.++.+|.+.+++...-
T Consensus 243 ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w 300 (662)
T KOG2156|consen 243 IRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYW 300 (662)
T ss_pred hhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHH
Confidence 46899999999999999999999999888877765 8999999999998888876653
No 8
>KOG2158|consensus
Probab=98.39 E-value=8.6e-08 Score=81.05 Aligned_cols=49 Identities=43% Similarity=0.803 Sum_probs=44.5
Q ss_pred CceeccCCCCCcchhhhHHHHHHHhhhhhCCCccccCCccccCcccchhhhh
Q psy3858 4 HHRVNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVIS 55 (180)
Q Consensus 4 ~q~vn~fp~~~~~~~k~~l~~~l~~m~~~~~~~~~~~p~~W~~~~~~~~~~~ 55 (180)
.|||||||||-|+| |+.|. +.+|+.-++++|.++|.+|.+|..+.++.+
T Consensus 172 fqrvn~fPgm~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a 220 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPA 220 (565)
T ss_pred hhhhhcCchHHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHH
Confidence 69999999999999 99999 999999999999999999999877666543
No 9
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.26 E-value=5.8e-07 Score=68.87 Aligned_cols=71 Identities=28% Similarity=0.413 Sum_probs=33.6
Q ss_pred ccccCCCc--chHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCce
Q psy3858 94 FPKSWSLP--RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFK 164 (180)
Q Consensus 94 ~P~t~~lp--~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~K 164 (180)
+|+|+... .+..++.+.+. +...|+||..|+.|+|+.++++..+.. ....+.++|+||+.+ .-
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~---~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~-----~g 89 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG---GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD-----GG 89 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH-----SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S-----S-
T ss_pred CCCEEEECCHHHHHHHHHHhc---CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC-----CC
Confidence 68887763 44445554432 678999999999999999999844321 234678999999843 11
Q ss_pred eEEEEEEE
Q psy3858 165 FDLRVYVL 172 (180)
Q Consensus 165 fD~R~yvl 172 (180)
-|+|+||+
T Consensus 90 ~d~Rv~Vi 97 (190)
T PF08443_consen 90 RDLRVYVI 97 (190)
T ss_dssp --EEEEEE
T ss_pred cEEEEEEE
Confidence 69999886
No 10
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.25 E-value=2e-06 Score=71.22 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=73.6
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHH-HHhCCCceEEEcCCCC---CCCCCEEE
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISY-NREHADETLILKPTRG---AEGKGIKI 134 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~-~~~~~~~~wI~KP~~~---~~G~GI~l 134 (180)
-.||-......+..|..+...|.+....-....=-.|+|+++.+...+.... ...+-+-..|+||..| +.|+|+.+
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~l 173 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSL 173 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEE
Confidence 6677777777777787777776654321111123489999886553333221 1234456899999999 99999999
Q ss_pred eCCCCcccccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 135 LNFIPEHEVMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 135 ~~~~~~~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
+.+....+....++++|+||..| -.|+|+||+
T Consensus 174 v~~~~~L~~l~~p~~lQEfVnh~------g~d~RVfVv 205 (328)
T PLN02941 174 AYDQEGLSKLEPPLVLQEFVNHG------GVLFKVYVV 205 (328)
T ss_pred ecCHHHHHhcCCcEEEEEecCCC------CEEEEEEEE
Confidence 98844333334479999999876 479999996
No 11
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.15 E-value=1.8e-07 Score=76.17 Aligned_cols=55 Identities=38% Similarity=0.828 Sum_probs=17.7
Q ss_pred CCCceeccCCCCCcchhhhHHHHHHHhhhhhCCCccccCCccccCcccchhhhhh
Q psy3858 2 SLHHRVNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISY 56 (180)
Q Consensus 2 ~~~q~vn~fp~~~~~~~k~~l~~~l~~m~~~~~~~~~~~p~~W~~~~~~~~~~~~ 56 (180)
.++|+||||||+.++++|+.|+++++++....+..+++.|.+|.++.+.+++...
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~ 59 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKY 59 (292)
T ss_dssp CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHH
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHH
Confidence 4689999999999999999999999999998888899999999997666655443
No 12
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.03 E-value=1.3e-05 Score=60.77 Aligned_cols=73 Identities=22% Similarity=0.422 Sum_probs=41.0
Q ss_pred CcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc-c--------cccCCceEEeeecCCccccCC
Q psy3858 92 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-H--------EVMDQDASCQVYLSNVLLING 162 (180)
Q Consensus 92 ~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~-~--------~~~~~~~vvQ~YI~~P~Li~g 162 (180)
+++|+|++-. +.+...+.+++... +|+||..|..|+|++.++.-.. . .....++++|+||+.= -+|
T Consensus 10 ~~~P~T~vs~-~~~~i~~f~~~~~~--~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i--~~G 84 (173)
T PF02955_consen 10 ELIPPTLVSR-DKEEIRAFIEEHGD--IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI--KEG 84 (173)
T ss_dssp CCS--EEEES--HHHHHHHHHHHSS--EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG--GG-
T ss_pred ccCcCEEEEC-CHHHHHHHHHHCCC--EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc--cCC
Confidence 7889998773 44454444444333 9999999999999999998321 1 1234579999999752 356
Q ss_pred ceeEEEEEEE
Q psy3858 163 FKFDLRVYVL 172 (180)
Q Consensus 163 ~KfD~R~yvl 172 (180)
|.|+.++
T Consensus 85 ---DkRii~~ 91 (173)
T PF02955_consen 85 ---DKRIILF 91 (173)
T ss_dssp ---EEEEEEE
T ss_pred ---CEEEEEE
Confidence 7777654
No 13
>PRK05246 glutathione synthetase; Provisional
Probab=97.94 E-value=2.4e-05 Score=64.55 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=48.3
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc-c-------c-ccCCceEEeeecCCccccCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-H-------E-VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~-~-------~-~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
++|+|.... +.+.+.+.+++. +..|+||..|++|+||.+++.-.. . . ....++++|+||+.+- +
T Consensus 134 ~vP~T~~~~-~~~~~~~~~~~~--~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~--~-- 206 (316)
T PRK05246 134 LMPPTLVTR-DKAEIRAFRAEH--GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK--E-- 206 (316)
T ss_pred cCCCEEEeC-CHHHHHHHHHHC--CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC--C--
Confidence 699998764 233343333333 368999999999999999965211 0 0 1245899999997432 2
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
-|+|++|+
T Consensus 207 -~D~Rv~vv 214 (316)
T PRK05246 207 -GDKRILLV 214 (316)
T ss_pred -CCEEEEEE
Confidence 39999875
No 14
>PRK12458 glutathione synthetase; Provisional
Probab=97.79 E-value=8.6e-05 Score=61.97 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=49.4
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc--c----c--ccCCceEEeeecCCccccCCce
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE--H----E--VMDQDASCQVYLSNVLLINGFK 164 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~--~----~--~~~~~~vvQ~YI~~P~Li~g~K 164 (180)
.+|+|++... .+.+.+.+++......|+||..|++|+||.++++-.. . + ....++++|+||+.+ ..
T Consensus 140 ~vP~T~v~~~-~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~-----~~ 213 (338)
T PRK12458 140 VRPTTHISRN-KEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGA-----EE 213 (338)
T ss_pred CCCCEEEeCC-HHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCC-----CC
Confidence 5899987643 2334333333333358999999999999999976432 1 0 124579999999743 23
Q ss_pred eEEEEEEE
Q psy3858 165 FDLRVYVL 172 (180)
Q Consensus 165 fD~R~yvl 172 (180)
.|+|++|+
T Consensus 214 gDiRv~vv 221 (338)
T PRK12458 214 GDVRILLL 221 (338)
T ss_pred CCEEEEEE
Confidence 68998863
No 15
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.73 E-value=0.00018 Score=59.30 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=47.6
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc-c-------c-ccCCceEEeeecCCccccCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-H-------E-VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~-~-------~-~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
.+|+|.+.. +.++..+.+++.. ..|+||..|++|+|+..++.-.. . . ....++++|+||+.+-
T Consensus 133 ~vP~T~v~~-~~~~~~~~~~~~g--~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~----- 204 (312)
T TIGR01380 133 VIPPTLVTR-DKAEIRAFLAEHG--DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIK----- 204 (312)
T ss_pred CCCCEEEeC-CHHHHHHHHHHcC--CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEecccccc-----
Confidence 689998653 3333433333332 58999999999999998875211 1 0 1245799999997431
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
.-|+|++|+
T Consensus 205 ~~D~Rv~vv 213 (312)
T TIGR01380 205 EGDKRILLI 213 (312)
T ss_pred CCCEEEEEE
Confidence 249999874
No 16
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.70 E-value=8.3e-05 Score=55.66 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=48.3
Q ss_pred ccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------
Q psy3858 70 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE------- 142 (180)
Q Consensus 70 l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~------- 142 (180)
+..|..+.+.+++.- .. +|+++.+..+ +++.+.... .+..||+||..|+.|+|+.++.+..+..
T Consensus 2 ~~dK~~~~~~~~~~g------v~-~P~~~~~~~~-~~~~~~~~~-~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 2 CNDKYRMRELLKKAG------VP-VPKTRIVDSE-EELRAFAED-LGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp TCCHHHHHHHHHHHT------S-----EEEECSH-HHHHHHHHH-SSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC------cC-CCCEEEECCH-HHHHHHHHH-cCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHH
Confidence 346776666665421 12 7777766433 444443332 2378999999999999999999843321
Q ss_pred c----cCCceEEeeecCCccccCCceeEEEEEE
Q psy3858 143 V----MDQDASCQVYLSNVLLINGFKFDLRVYV 171 (180)
Q Consensus 143 ~----~~~~~vvQ~YI~~P~Li~g~KfD~R~yv 171 (180)
. ....++||+||+ |.-+.++.++
T Consensus 73 ~~~~~~~~~~ivqe~i~------g~e~~~~~~~ 99 (184)
T PF13535_consen 73 EDSPLGNGPVIVQEYIP------GDEYSVDGVV 99 (184)
T ss_dssp HHHS-HSSSEEEEE---------SEEEEEEEEE
T ss_pred HhcccCCccEEEEEeee------eeeEEEEEEE
Confidence 0 135799999998 4455555443
No 17
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=5.6e-05 Score=62.59 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=51.0
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCC-ccc--------ccCCceEEeeecCCccccCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIP-EHE--------VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~-~~~--------~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
.+|+|.+.-.. .+......+..+..-|+||..|+.|+||.++++-. +.. .....++||+||+.|
T Consensus 133 pvP~T~i~~~~-~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~------ 205 (318)
T COG0189 133 PVPPTLITRDP-DEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA------ 205 (318)
T ss_pred CCCCEEEEcCH-HHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc------
Confidence 47999888553 22223334456678999999999999999999965 211 122459999999976
Q ss_pred eeEEEEEEEe
Q psy3858 164 KFDLRVYVLM 173 (180)
Q Consensus 164 KfD~R~yvlv 173 (180)
+=|.|.++++
T Consensus 206 ~~~~rrivv~ 215 (318)
T COG0189 206 KRDDRRVLVG 215 (318)
T ss_pred cCCcEEEEEe
Confidence 3455555554
No 18
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.69 E-value=7.2e-05 Score=61.20 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=48.0
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeE
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFD 166 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD 166 (180)
+|+|...... ++..+......+..+|+||..|+.|+|+.++++..+.+ .....++||+||+.. .-.|
T Consensus 114 ~P~t~~~~~~-~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~d 187 (300)
T PRK10446 114 LPVTGIAHSP-DDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGCD 187 (300)
T ss_pred CCCEEEeCCH-HHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCce
Confidence 6777665322 22222222223458999999999999999998743211 134579999999732 2478
Q ss_pred EEEEEE
Q psy3858 167 LRVYVL 172 (180)
Q Consensus 167 ~R~yvl 172 (180)
+|+.|+
T Consensus 188 ~rv~vi 193 (300)
T PRK10446 188 IRCLVV 193 (300)
T ss_pred EEEEEE
Confidence 998875
No 19
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.62 E-value=0.00012 Score=58.59 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=47.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc----------ccCCceEEeeecCCccccCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE----------VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~----------~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
.|+|+.+.+ .+++.+...+ -+..+|+||..|+.|+|+.++++..+.. .....+++|+||+.+ .
T Consensus 103 ~P~t~~~~~-~~~~~~~~~~-~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~-----~ 175 (277)
T TIGR00768 103 QPRTGLAGS-PEEALKLIEE-IGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKP-----G 175 (277)
T ss_pred CCCEEEeCC-HHHHHHHHHh-cCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCC-----C
Confidence 688887743 2333333222 2358999999999999999999843321 012479999999832 1
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
-+|+|++|+
T Consensus 176 ~~~~rv~v~ 184 (277)
T TIGR00768 176 GRDIRVFVV 184 (277)
T ss_pred CceEEEEEE
Confidence 268888863
No 20
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.35 E-value=0.00062 Score=54.77 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=46.5
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------ccCCceEEeeecCCccccCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------VMDQDASCQVYLSNVLLING 162 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~~~~~~vvQ~YI~~P~Li~g 162 (180)
+|+|+.+.. .++..+.... -+..+|+||..|+.|+|+.++++..+.. .....+++|+||+.|
T Consensus 102 ~P~t~~~~~-~~~~~~~~~~-~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~----- 174 (280)
T TIGR02144 102 TPRTYLAFD-REAALKLAEA-LGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP----- 174 (280)
T ss_pred CCCeEeeCC-HHHHHHHHHH-cCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC-----
Confidence 688877632 2233222222 3457999999999999999998843211 022469999999743
Q ss_pred ceeEEEEEEE
Q psy3858 163 FKFDLRVYVL 172 (180)
Q Consensus 163 ~KfD~R~yvl 172 (180)
..|+|++|+
T Consensus 175 -~~d~~v~vi 183 (280)
T TIGR02144 175 -GRDIRVFVI 183 (280)
T ss_pred -CCceEEEEE
Confidence 367777765
No 21
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.29 E-value=0.00085 Score=55.15 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.5
Q ss_pred ccccCCCcchHHHHHHH-HHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---ccCCceEEeeecCCccccCCceeEEEE
Q psy3858 94 FPKSWSLPRQWKEVISY-NREHADETLILKPTRGAEGKGIKILNFIPEHE---VMDQDASCQVYLSNVLLINGFKFDLRV 169 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~-~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---~~~~~~vvQ~YI~~P~Li~g~KfD~R~ 169 (180)
.|+|+.+.+ .+++.+. ....-+..+|+||..|+.|+|+.++++.++.. .....++||+||. |.-+++.+
T Consensus 126 ~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~~~~lvqeyi~------G~e~~v~~ 198 (326)
T PRK12767 126 TPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPNLIIQEFIE------GQEYTVDV 198 (326)
T ss_pred CCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhCCCeEEEeccC------CceEEEEE
Confidence 678877633 2333321 22334568999999999999999999844321 1234899999996 45555555
Q ss_pred EE
Q psy3858 170 YV 171 (180)
Q Consensus 170 yv 171 (180)
++
T Consensus 199 ~~ 200 (326)
T PRK12767 199 LC 200 (326)
T ss_pred EE
Confidence 43
No 22
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.13 E-value=0.00049 Score=59.23 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=47.5
Q ss_pred CcccccCCCcc-------hHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCc
Q psy3858 92 NIFPKSWSLPR-------QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNV 157 (180)
Q Consensus 92 ~~~P~t~~lp~-------e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P 157 (180)
.++|-|..+.. +..+..+.+. ..+..||+||..+..|+||.+-...++.+ ...++||+|+|+.-+
T Consensus 308 ~HvP~T~~l~~~~~~~~g~~~dL~~~~~-a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 308 RHVPWTRLLTAGRTTYQGEDVDLVEFAI-ANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred HhCCceEEEcCccccccccchhHHHHHH-hchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 68999999966 2223332221 24578999999999999999998855422 345699999999854
Q ss_pred c
Q psy3858 158 L 158 (180)
Q Consensus 158 ~ 158 (180)
-
T Consensus 387 ~ 387 (445)
T PF14403_consen 387 R 387 (445)
T ss_pred c
Confidence 3
No 23
>PRK06849 hypothetical protein; Provisional
Probab=97.04 E-value=0.003 Score=53.45 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=41.7
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc----ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE----VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~----~~~~~~vvQ~YI~~P 157 (180)
+|+|+.+.. .+++.+...+..+..+|+||..|+.|.|+.++.+..... ....+++||+||+-+
T Consensus 131 vP~t~~v~~-~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~G~ 197 (389)
T PRK06849 131 VPKTYLITD-PEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELPISKDNPWVMQEFIQGK 197 (389)
T ss_pred CCCEEEeCC-HHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccccCCCCCeEEEEEecCC
Confidence 788887733 233333322223679999999999999999987722211 123469999999844
No 24
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=96.91 E-value=0.0026 Score=52.67 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=37.8
Q ss_pred ccccchHhHHHHHHHHHhhCCCCCCcccccCCCcch---HHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCC
Q psy3858 68 ANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQ---WKEVISYNREHADETLILKPTRGAEGKGIKILNFI 138 (180)
Q Consensus 68 ~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e---~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~ 138 (180)
..+..|......+++ .-.+ +|+|+.+-.. .+.+.+.+. .....|+||..|++|+||.++++.
T Consensus 33 ~~~~DK~~t~~lL~~--aglp-----vP~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~ 97 (317)
T TIGR02291 33 PLVDDKLKTKIIAQA--AGIT-----VPELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSR 97 (317)
T ss_pred cccccHHHHHHHHHH--cCCC-----CCCEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEec
Confidence 344556555444433 1123 7998876432 233443332 234689999999999999999763
No 25
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=96.75 E-value=0.0036 Score=57.57 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=45.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc----------ccCCceEEeeecCCccccCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE----------VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~----------~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
+|++..+. +.++..+.+....+...|+||..|+.|+||.++.+....+ .....++||+||. |
T Consensus 503 vP~~~~~~-~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G- 574 (752)
T PRK02471 503 VPAGDEFT-SLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------G- 574 (752)
T ss_pred CCCEEEEc-CHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------C-
Confidence 56665442 2333433333323567999999999999999987532211 1345799999996 4
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
-|+|+.|+
T Consensus 575 -~E~Rv~Vi 582 (752)
T PRK02471 575 -TEYRFFVL 582 (752)
T ss_pred -CEEEEEEE
Confidence 48888775
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=96.65 E-value=0.0029 Score=56.18 Aligned_cols=68 Identities=26% Similarity=0.428 Sum_probs=45.4
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE-eCCCCccc-------ccCCceEEeeecCCccccCCcee
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHE-------VMDQDASCQVYLSNVLLINGFKF 165 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~Kf 165 (180)
+|+++...+ .++..+..++.. ..|+||..|++|+||.+ +++..+.+ .....++||+||+ ..
T Consensus 312 VP~~~~~~~-~~~~~~~~~~~G--~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~--------G~ 380 (547)
T TIGR03103 312 VPEQQLAGN-GEAVEAFLAEHG--AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP--------GE 380 (547)
T ss_pred CCCEEEECC-HHHHHHHHHHhC--CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc--------CC
Confidence 788776643 234444333322 48999999999999997 66633211 2345799999997 35
Q ss_pred EEEEEEE
Q psy3858 166 DLRVYVL 172 (180)
Q Consensus 166 D~R~yvl 172 (180)
|+|+.|+
T Consensus 381 d~Rv~Vi 387 (547)
T TIGR03103 381 DLRLVVI 387 (547)
T ss_pred eEEEEEE
Confidence 9999764
No 27
>PRK14016 cyanophycin synthetase; Provisional
Probab=96.59 E-value=0.0037 Score=57.33 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=46.3
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE-eCCCCccc-------ccCCceEEeeecCCccccCCcee
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHE-------VMDQDASCQVYLSNVLLINGFKF 165 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~Kf 165 (180)
+|+++...+ .++..+..+ .-+.+.|+||..|+.|+|+.+ +++..+.+ .....++||+||+ ..
T Consensus 229 vP~~~~v~s-~~~a~~~a~-~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~--------G~ 298 (727)
T PRK14016 229 VPEGRVVTS-AEDAWEAAE-EIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP--------GK 298 (727)
T ss_pred CCCeeEeCC-HHHHHHHHH-HcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC--------Cc
Confidence 666665432 333433333 245789999999999999998 77633321 1245799999996 35
Q ss_pred EEEEEEE
Q psy3858 166 DLRVYVL 172 (180)
Q Consensus 166 D~R~yvl 172 (180)
|+|++|+
T Consensus 299 d~Rv~Vv 305 (727)
T PRK14016 299 DHRLLVV 305 (727)
T ss_pred eEEEEEE
Confidence 8898774
No 28
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.50 E-value=0.0013 Score=49.06 Aligned_cols=40 Identities=30% Similarity=0.526 Sum_probs=17.1
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCcccc-cCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHEV-MDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~~-~~~~~vvQ~YI~ 155 (180)
...||+||..|+.|.||+++++.++... .....++|+||+
T Consensus 31 ~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEESS-------B--SS--TTE-------EEEE---
T ss_pred CCcEEEEeCCCCCCCCeEEECCchhhccccccceEEeeeeC
Confidence 5789999999999999999999654331 122239999998
No 29
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.47 E-value=0.0094 Score=51.59 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=44.8
Q ss_pred CcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 92 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 92 ~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
...|-+.-...+.+++.+.+++ -+-+-|+||+.|..|+|++++++..+.. ..+..++++|||++|
T Consensus 129 P~vpgs~~~~~~~ee~~~~a~~-iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 129 PVVPGSDGAVADNEEALAIAEE-IGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CcCCCCCCCcCCHHHHHHHHHH-cCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 3444442222444566665443 3478999999999999999999943321 245569999999999
No 30
>KOG2157|consensus
Probab=96.36 E-value=0.0056 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCC-ceeccCCCCCcchhhhHHHHHHHhhhhhCCCc
Q psy3858 2 SLH-HRVNHFPGMANLESKAILAYHLNRMKYFFPDE 36 (180)
Q Consensus 2 ~~~-q~vn~fp~~~~~~~k~~l~~~l~~m~~~~~~~ 36 (180)
.++ |+|||||+..++.+|+.++.++.++.....+.
T Consensus 125 ~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~~~e~~ 160 (497)
T KOG2157|consen 125 APYNQVVNHFPRRKELTRKDLLMKLIKRYLALLERS 160 (497)
T ss_pred cchhhhhhccccHHHhhhhHHhhhhHHHHHHhcccc
Confidence 567 99999999999999999999999998866654
No 31
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=96.30 E-value=0.0064 Score=49.54 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=40.2
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
.|+|+.+... +++..... .-+-.+|+||..++.|+|+.++++..+.. .....++||+||+
T Consensus 113 ~p~~~~~~~~-~~~~~~~~-~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~ 179 (304)
T PRK01372 113 TPPWIVLTRE-EDLLAAID-KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK 179 (304)
T ss_pred CCCEEEEeCc-chHHHHHh-hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC
Confidence 6677666432 22222222 23557999999999999999999844321 1246799999997
No 32
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.20 E-value=0.013 Score=53.56 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=45.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCcc----------cccCCceEEeeecCCccccCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEH----------EVMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~----------~~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
+|++..+... ++..+.+..-.+...++||..|+.|+||.++.+.... ...+..++||+||+ |
T Consensus 490 VP~g~~~~~~-~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G- 561 (737)
T TIGR01435 490 VPFGDEFSSQ-ALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------G- 561 (737)
T ss_pred CCCEEEECCH-HHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------C-
Confidence 5665555332 2222232222345789999999999999998763221 12345799999997 4
Q ss_pred eeEEEEEEEe
Q psy3858 164 KFDLRVYVLM 173 (180)
Q Consensus 164 KfD~R~yvlv 173 (180)
-|+|+.|+-
T Consensus 562 -~EyRv~VIg 570 (737)
T TIGR01435 562 -TEYRFFVLN 570 (737)
T ss_pred -CEEEEEEEC
Confidence 589988763
No 33
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=96.14 E-value=0.015 Score=47.46 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=66.3
Q ss_pred ccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCC---cchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCC
Q psy3858 62 NHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSL---PRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFI 138 (180)
Q Consensus 62 Nhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~l---p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~ 138 (180)
|.---...+..|..+.+.+..+-=..|...-..+..|.. ..+.+++.+.++......+++||..|++|+||.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 444344456677776666555311112211112223322 23455666666655568899999999999999999874
Q ss_pred Cc----c--c------ccCC--ceEEeeecCCcccc----CCceeEEEEEEEeee
Q psy3858 139 PE----H--E------VMDQ--DASCQVYLSNVLLI----NGFKFDLRVYVLMTS 175 (180)
Q Consensus 139 ~~----~--~------~~~~--~~vvQ~YI~~P~Li----~g~KfD~R~yvlvts 175 (180)
.. . . .... .+|||++|..==.+ ..-=-++|+.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~ 150 (285)
T PF14397_consen 96 DGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD 150 (285)
T ss_pred cCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC
Confidence 31 0 0 1122 89999999743222 234568898887653
No 34
>PRK07206 hypothetical protein; Provisional
Probab=96.07 E-value=0.017 Score=49.23 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=40.9
Q ss_pred ccccCCCcchHHHHHHHHHhC--CCceEEEcCCCCCCCCCEEEeCCCCccc--------------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREH--ADETLILKPTRGAEGKGIKILNFIPEHE--------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~--~~~~wI~KP~~~~~G~GI~l~~~~~~~~--------------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+.+ .+++.+..+.. .+.+.|+||..|+.|+|+.++++.++.. .....++||+||+-+
T Consensus 123 ~p~~~~~~~-~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~ 201 (416)
T PRK07206 123 AARQINTAD-WEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGT 201 (416)
T ss_pred cccEEecCC-HHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccE
Confidence 566666642 23333332221 1338999999999999999999944321 013579999999844
No 35
>PRK08462 biotin carboxylase; Validated
Probab=95.94 E-value=0.026 Score=48.63 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+|+.++++..+.. .....++||+||+.|
T Consensus 153 ~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 208 (445)
T PRK08462 153 IGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNP 208 (445)
T ss_pred cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCC
Confidence 4578999999999999999999843321 123468999999866
No 36
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=95.87 E-value=0.015 Score=47.54 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=37.7
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEEe
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVLM 173 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlv 173 (180)
-+-.+|+||..++.|.||.++.+..+.. .....++||+||+ | .|+++.|+.
T Consensus 145 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G--~e~~v~vi~ 202 (315)
T TIGR01205 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------G--RELEVSILG 202 (315)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------C--EEEEEEEEC
Confidence 4568999999999999999999843321 2345799999995 4 366666554
No 37
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=95.76 E-value=0.034 Score=48.89 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=33.9
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+||+++++..+.. .....++||+||+.|
T Consensus 151 igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 151 IGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred hCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 4568999999999999999999943321 124579999999876
No 38
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=95.60 E-value=0.044 Score=45.65 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=46.1
Q ss_pred cccccCCCcchHHHHHHHHHh--CCCceEEEcCCCCCCCCCEEEeCC-CCccc----------------------ccCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNRE--HADETLILKPTRGAEGKGIKILNF-IPEHE----------------------VMDQD 147 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~--~~~~~wI~KP~~~~~G~GI~l~~~-~~~~~----------------------~~~~~ 147 (180)
-+|+++.. ...++|.+...+ .++...++||..|..|+|-++++. ..+.+ ....+
T Consensus 121 pvp~~~~v-~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~ 199 (329)
T PF15632_consen 121 PVPPYWRV-RTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPP 199 (329)
T ss_pred CCCCEEEe-CCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCC
Confidence 47777776 556777665443 456789999999999999999995 22110 13467
Q ss_pred eEEeeecCCc
Q psy3858 148 ASCQVYLSNV 157 (180)
Q Consensus 148 ~vvQ~YI~~P 157 (180)
++|++|++-|
T Consensus 200 llvMeyL~G~ 209 (329)
T PF15632_consen 200 LLVMEYLPGP 209 (329)
T ss_pred cEEecCCCCC
Confidence 9999999865
No 39
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=95.50 E-value=0.024 Score=53.10 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=45.4
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE-eCCCCccc-------ccCCceEEeeecCCccccCCcee
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHE-------VMDQDASCQVYLSNVLLINGFKF 165 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~Kf 165 (180)
+|++..+.+ .++..+..++ -+...++||..|+.|+|+.+ +++.++.. .....++||+||+ | -
T Consensus 228 vP~~~~~~s-~~ea~~~~~~-ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~------G--~ 297 (864)
T TIGR02068 228 VPEGTVVQS-AEDAWEAAQD-LGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT------G--R 297 (864)
T ss_pred CCCEEEECC-HHHHHHHHHH-cCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc------C--C
Confidence 677665533 2333333222 35688999999999999998 66633211 1245799999996 4 4
Q ss_pred EEEEEEE
Q psy3858 166 DLRVYVL 172 (180)
Q Consensus 166 D~R~yvl 172 (180)
|+|++|+
T Consensus 298 e~rvlVv 304 (864)
T TIGR02068 298 DHRLLVV 304 (864)
T ss_pred EEEEEEE
Confidence 8888775
No 40
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.37 E-value=0.058 Score=47.12 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+||.++++..+.+ .....++|++||+.|
T Consensus 151 igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~ 206 (478)
T PRK08463 151 IGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP 206 (478)
T ss_pred hCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4568999999999999999999944321 124578999999865
No 41
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.37 E-value=0.025 Score=47.21 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.1
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCC-CCCCEEEeCCCCccc-----ccCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHE-----VMDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~~ 156 (180)
.|+++.+.+ .++..+... .-+-++|+||..++ .|+|+.++++.++.+ .....++||+||+.
T Consensus 113 ~p~~~~~~~-~~~~~~~~~-~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~~ 179 (352)
T TIGR01161 113 VPPFLVIKD-EEELDAALQ-ELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVPF 179 (352)
T ss_pred CCCccEeCC-HHHHHHHHH-HcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCCC
Confidence 566666543 233333322 23568999999875 899999999854422 12347999999983
No 42
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=95.33 E-value=0.027 Score=46.79 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.7
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-+||+||..+..+.||.++++..+.. .....++||+||+
T Consensus 161 ~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~ 208 (333)
T PRK01966 161 LGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK 208 (333)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC
Confidence 4568999999999999999999843321 2356899999998
No 43
>PRK02186 argininosuccinate lyase; Provisional
Probab=95.31 E-value=0.035 Score=52.13 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=41.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc--------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE--------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~--------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+.. ..++.+... .-+.++|+||..|+.|+|+.++++..+.. .....++||+||+-+
T Consensus 122 ~P~~~~v~~-~~e~~~~~~-~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G~ 191 (887)
T PRK02186 122 VPRTHALAL-RAVALDALD-GLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEGD 191 (887)
T ss_pred CCCEEEeCC-HHHHHHHHH-hCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccCC
Confidence 577766533 233333222 24568999999999999999999844321 125679999999843
No 44
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=95.24 E-value=0.061 Score=46.47 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 100 LPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 100 lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+..+.++..+..+ .-+-++|+||..|+.|+|+.++++.++.. .....++||+||+.|
T Consensus 137 ~~~~~~e~~~~~~-~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (449)
T TIGR00514 137 LVEDEEENVRIAK-RIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206 (449)
T ss_pred CcCCHHHHHHHHH-HhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3334444433322 23568999999999999999999844321 123469999999866
No 45
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=95.18 E-value=0.028 Score=45.81 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..++.|.|+.++++..+.. .....++||+||+
T Consensus 124 l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~ 171 (299)
T PRK14571 124 LGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP 171 (299)
T ss_pred cCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc
Confidence 4568999999999999999999843321 1235799999997
No 46
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=95.11 E-value=0.072 Score=46.39 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-.+|+||..|+.|+|+.++++.++.. .....++||+||+.+
T Consensus 154 igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 154 IGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred hCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4578999999999999999999843321 124569999999865
No 47
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.87 E-value=0.082 Score=50.92 Aligned_cols=55 Identities=13% Similarity=0.324 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 102 RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 102 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
.+.++..+..+ .-+-.+|+||..|+.|+|++++++..+.+ .....++||+||+.|
T Consensus 139 ~~~eea~~~ae-~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~ 206 (1143)
T TIGR01235 139 ETMEEVLDFAA-AIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP 206 (1143)
T ss_pred CCHHHHHHHHH-HcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC
Confidence 44444433322 34578999999999999999999944321 124579999999876
No 48
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=94.87 E-value=0.069 Score=45.26 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=32.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSN 156 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~ 156 (180)
-+-+.|+||+.++.|+|+.++++..+.+ .....++||+||+-
T Consensus 101 ~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G 151 (379)
T PRK13790 101 CELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG 151 (379)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC
Confidence 4568999999999999999999844321 11347999999973
No 49
>PRK12999 pyruvate carboxylase; Reviewed
Probab=94.72 E-value=0.089 Score=50.72 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 100 LPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 100 lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
...+.++..+..+ .-+-.+|+||..|+.|+|++++++..+.. .....++||+||+.|
T Consensus 141 ~v~s~eea~~~a~-~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 141 PIDDIEEALEFAE-EIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred CCCCHHHHHHHHH-HhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 3344444444332 34578999999999999999999843321 124579999999876
No 50
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=94.61 E-value=0.04 Score=46.29 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=40.7
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------ccCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------VMDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~~~~~~vvQ~YI~~ 156 (180)
.|+++.+.+ .++..+... .-+-+.|+||..|+.|+|+.++++..+.+ .....++||+||+.
T Consensus 116 ~p~~~~~~~-~~~~~~~~~-~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 116 TSRYMFADS-LDELREAVE-KIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF 187 (380)
T ss_pred CCCceEeCC-HHHHHHHHH-HcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 555555533 233333322 34568999999999999999999944321 01357999999974
No 51
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=94.59 E-value=0.13 Score=44.43 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 151 ~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (451)
T PRK08591 151 IGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206 (451)
T ss_pred cCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 3568999999999999999999844321 113468999999865
No 52
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=94.29 E-value=0.098 Score=50.05 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=41.0
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~ 156 (180)
.|+++.+.+ .++..+..+ .-+-++|+||..+..|+|+.++.+..+.. ....+++||+||++
T Consensus 684 ~P~~~~v~s-~ee~~~~~~-~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~ 753 (1050)
T TIGR01369 684 QPKWKTATS-VEEAVEFAS-EIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED 753 (1050)
T ss_pred CCCeEEECC-HHHHHHHHH-hcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC
Confidence 566665532 233333322 24568999999999999999999843321 12356999999984
No 53
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=94.20 E-value=0.069 Score=45.00 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=35.9
Q ss_pred CceEEEcCCCCCC--CCCEEEeCCCCccc--------------ccCCceEEeeecCCccccCCceeEEEEEE
Q psy3858 116 DETLILKPTRGAE--GKGIKILNFIPEHE--------------VMDQDASCQVYLSNVLLINGFKFDLRVYV 171 (180)
Q Consensus 116 ~~~wI~KP~~~~~--G~GI~l~~~~~~~~--------------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yv 171 (180)
+.+.|+||..+++ |+|++++++.++.. ....+++||+||. |.-|.+=+|+
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~ 217 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFY 217 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEE
Confidence 4579999999999 99999999843211 1224678999997 5555555553
No 54
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=94.19 E-value=0.12 Score=44.20 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=40.3
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+ .+.++..+..+. -+...|+||..++.|+|+.++++..+.. .....++||+||+-+
T Consensus 117 ~p~~~~~-~~~~~~~~~~~~-~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~ 191 (420)
T PRK00885 117 TAAYETF-TDAEEALAYLDE-KGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDGE 191 (420)
T ss_pred CCCeEEe-CCHHHHHHHHHH-cCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCCc
Confidence 5555544 233333333322 3468999999999999999999843311 013479999999754
No 55
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=94.12 E-value=0.17 Score=44.18 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-+.|+||..|+.|+|+.++++.++.. .....+++++||+.|
T Consensus 150 igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 150 IGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred cCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 4578999999999999999999844321 123468999999765
No 56
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=94.08 E-value=0.064 Score=44.73 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCcc-------cccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEH-------EVMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~-------~~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..+..+.||.++++..+. ...+..++||+||+
T Consensus 164 l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 211 (343)
T PRK14568 164 LTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV 211 (343)
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC
Confidence 346899999999999999999984332 12346799999997
No 57
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=93.93 E-value=0.29 Score=41.82 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=32.0
Q ss_pred Cce-EEEcCCCCCCCCCEEEeCCCCccc--------c----cCCceEEeeecCCc
Q psy3858 116 DET-LILKPTRGAEGKGIKILNFIPEHE--------V----MDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~-wI~KP~~~~~G~GI~l~~~~~~~~--------~----~~~~~vvQ~YI~~P 157 (180)
+-. +|+||..++.|+|+.++++..+.. . ....++||+||+-+
T Consensus 139 g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G~ 193 (423)
T TIGR00877 139 GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDGE 193 (423)
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccCc
Confidence 456 999999999999999999844321 0 12479999999854
No 58
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=93.88 E-value=0.44 Score=43.04 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCCCEEEeCC-C-----CcccccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 118 TLILKPTRGAEGKGIKILNF-I-----PEHEVMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 118 ~wI~KP~~~~~G~GI~l~~~-~-----~~~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.|+.||..|-.|.+|.|++. - ..+....+.+|.|+|++=| -.+|...=+.+|++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFTV 588 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEEE
Confidence 49999999999999999976 1 1233456789999999877 44555555555554
No 59
>PRK05586 biotin carboxylase; Validated
Probab=93.86 E-value=0.17 Score=43.66 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-+.|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 151 igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~ 206 (447)
T PRK05586 151 IGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206 (447)
T ss_pred cCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 4568999999999999999999844321 113579999999865
No 60
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.83 E-value=0.18 Score=43.54 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=30.5
Q ss_pred CceEEEcCCCCCCCCCEEEeCC----CCccc-------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNF----IPEHE-------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~----~~~~~-------~~~~~~vvQ~YI~~P 157 (180)
+...|+||+.++.|+|+.++.+ +.+.. .....+|||+||+-|
T Consensus 141 ~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~ 193 (435)
T PRK06395 141 MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGE 193 (435)
T ss_pred CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCc
Confidence 4579999999999999999953 11100 123469999999854
No 61
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=93.75 E-value=0.073 Score=43.47 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=31.6
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~------~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..++.|.|+.++++..+.. .....++||+||+
T Consensus 129 ~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~ 175 (296)
T PRK14569 129 ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT 175 (296)
T ss_pred cCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc
Confidence 3568999999999999999999844321 1224799999996
No 62
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=93.74 E-value=0.083 Score=44.56 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=31.1
Q ss_pred ceEEEcCCCCCCCCCEEEeCCCCccc----c--------cCCceEEeeecC
Q psy3858 117 ETLILKPTRGAEGKGIKILNFIPEHE----V--------MDQDASCQVYLS 155 (180)
Q Consensus 117 ~~wI~KP~~~~~G~GI~l~~~~~~~~----~--------~~~~~vvQ~YI~ 155 (180)
.+.|+||..++.|+|++++.+..+.+ . ....++||+||.
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~ 200 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV 200 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC
Confidence 57899999999999999999943311 0 146799999998
No 63
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=93.60 E-value=0.26 Score=42.16 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCCCEEEeCCCC-----cccccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 118 TLILKPTRGAEGKGIKILNFIP-----EHEVMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 118 ~wI~KP~~~~~G~GI~l~~~~~-----~~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
-|+.||..|-.|.+|.|++.-. .+....+.+|.|+|++=| -++|.-.=+.+|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 4999999999999999997611 222346789999999877 55776556666654
No 64
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=93.49 E-value=0.27 Score=42.33 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+|+.++++.++.. .....++||+||+.+
T Consensus 151 ~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~ 206 (450)
T PRK06111 151 IGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP 206 (450)
T ss_pred hCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC
Confidence 3568999999999999999999844321 123479999999865
No 65
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.46 E-value=0.1 Score=44.09 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------c----cCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------V----MDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~----~~~~~vvQ~YI~ 155 (180)
-+-+.|+||..++.|+|+.++++..+.+ . ....+|||+||+
T Consensus 148 ~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 148 IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 4568999999999999999999844321 0 125799999997
No 66
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.44 E-value=0.12 Score=43.60 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCC-CCCCCEEEeCCCCccc-----ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRG-AEGKGIKILNFIPEHE-----VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~-~~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~ 155 (180)
.|+++.+. +.+++.+... .-+-++|+||..+ +.|+|+.++++..+.+ .....++||+||+
T Consensus 115 ~p~~~~v~-s~~~l~~~~~-~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 115 VAPFAVVD-SAEDLEAALA-DLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCCceEeC-CHHHHHHHHH-HcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 45555443 3344433322 2467899999974 6899999999844322 2345799999998
No 67
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.26 E-value=0.19 Score=48.28 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=40.1
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
.|+++... ..++..+.. ..-+-++|+||..+..|+|+.++.+..+.+ ....+++||+||+
T Consensus 685 ~P~~~~~~-s~ee~~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~ 751 (1068)
T PRK12815 685 HVPGLTAT-DEEEAFAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID 751 (1068)
T ss_pred CCCeEEeC-CHHHHHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 55665543 223333322 234578999999999999999999843321 1345799999996
No 68
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=93.05 E-value=0.13 Score=42.98 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..++.+.||.++++.++.. .....++||+||+
T Consensus 170 l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~ 217 (347)
T PRK14572 170 LGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS 217 (347)
T ss_pred cCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 3568999999999999999999844321 1345799999996
No 69
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.04 E-value=0.22 Score=47.74 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=41.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+.. .++..+.. +.-+-++|+||..++.|+|+.++.+.++.+ ....+++||+||+.+
T Consensus 684 ~P~~~~~~s-~ee~~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 684 QPPNGTATS-VEEALEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA 754 (1066)
T ss_pred CCCeEEECC-HHHHHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC
Confidence 566665532 23333322 234568999999999999999999844321 124579999999876
No 70
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=92.81 E-value=0.053 Score=43.45 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecCCc----cccCCce
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLSNV----LLINGFK 164 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~~P----~Li~g~K 164 (180)
..+.+|+||..||+|.||.+..+.+++ .|+|+||+-- .|++|.|
T Consensus 137 ~~~k~ViKp~dgCgge~i~~~~~~pd~------~i~qEfIeG~~lSVSL~~GEk 184 (307)
T COG1821 137 EPKKYVIKPADGCGGEGILFGRDFPDI------EIAQEFIEGEHLSVSLSVGEK 184 (307)
T ss_pred CCceEEecccccCCcceeeccCCCcch------hhHHHhcCCcceEEEEecCCc
Confidence 357899999999999999998886542 7888888743 2345554
No 71
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=92.45 E-value=0.28 Score=37.81 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=35.9
Q ss_pred chHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCC
Q psy3858 102 RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSN 156 (180)
Q Consensus 102 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~ 156 (180)
.+.++..++++.......++||+..+.|+|+.|+.+..+.. ...+..||++|++-
T Consensus 24 ~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G 91 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEG 91 (194)
T ss_dssp SSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S
T ss_pred CCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCC
Confidence 34555555555545555689999999999999999843211 13568999999983
No 72
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=92.15 E-value=0.41 Score=37.31 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCcc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNVL 158 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P~ 158 (180)
-+-+.|+||+.|.+|+|++++.+..+.. ....++++.+||+++-
T Consensus 37 iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~r 93 (211)
T PF02786_consen 37 IGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAR 93 (211)
T ss_dssp H-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEE
T ss_pred cCCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhh
Confidence 3568999999999999999999943321 2467899999999874
No 73
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=92.06 E-value=0.18 Score=39.02 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCcc-------cccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEH-------EVMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~-------~~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..+.-..||.++++.++. ...+..++|++||+
T Consensus 32 l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~ 79 (203)
T PF07478_consen 32 LGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS 79 (203)
T ss_dssp HSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S
T ss_pred cCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec
Confidence 456899999999999999999984331 13456899999996
No 74
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=91.84 E-value=0.44 Score=40.24 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 114 HADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 114 ~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
.-+-+.|+||..+..|.||.++++..+.. ..+..++||+||+
T Consensus 169 ~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~ 217 (364)
T PRK14570 169 VLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE 217 (364)
T ss_pred hcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC
Confidence 34568999999988899999998843321 2345799999997
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=91.72 E-value=0.64 Score=40.85 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=39.3
Q ss_pred cCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc--------c------c---------ccCCceEEeee
Q psy3858 97 SWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE--------H------E---------VMDQDASCQVY 153 (180)
Q Consensus 97 t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~--------~------~---------~~~~~~vvQ~Y 153 (180)
.|..-.+.++..++++. . ...|+||+.++.|+|+.++++..+ . + .....+|||+|
T Consensus 127 ~~~~~~~~~ea~~~~~~-~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEf 204 (486)
T PRK05784 127 RYKVFYDVEEAAKFIEY-G-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEK 204 (486)
T ss_pred cceEeCCHHHHHHHHhh-c-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEc
Confidence 34443444555544432 2 489999999999999999998431 0 0 01357999999
Q ss_pred cCCc
Q psy3858 154 LSNV 157 (180)
Q Consensus 154 I~~P 157 (180)
|+-+
T Consensus 205 L~G~ 208 (486)
T PRK05784 205 VDGV 208 (486)
T ss_pred cCCe
Confidence 9855
No 76
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.74 Score=39.75 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=70.9
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhCCCCCC--cccccCCC--cchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYN--IFPKSWSL--PRQWKEVISYNREHADETLILKPTRGAEGKGIKI 134 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~--~~P~t~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l 134 (180)
-.+|- ||+..+..|..++..= .|.+.+..+-. --++||.+ |++.+..++.+ ...++||..|+.|-|.-+
T Consensus 311 tiaNA-~GtGV~ddka~~~y~P-~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l-----~~lViK~~~~~gg~~~lv 383 (488)
T COG2308 311 TIANA-LGTGVADDKALYAYVP-QMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANL-----SELVIKPVEGSGGYGMLV 383 (488)
T ss_pred EEecC-CCcCcccchhHHHHHH-HHHHHHcccccccCCCCeeecCCHHHHHHHHhch-----hhheEeeeccCCCCccee
Confidence 45554 7999999998776532 23333222222 23457766 45554444322 346779999999988888
Q ss_pred eCCCCccc---------ccCCceEEeeecC---CccccCC----ceeEEEEEEEeee
Q psy3858 135 LNFIPEHE---------VMDQDASCQVYLS---NVLLING----FKFDLRVYVLMTS 175 (180)
Q Consensus 135 ~~~~~~~~---------~~~~~~vvQ~YI~---~P~Li~g----~KfD~R~yvlvts 175 (180)
-..+.+.+ ...++||.|+-+. -|..++| +-.|+|.|++.+.
T Consensus 384 Gpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~ 440 (488)
T COG2308 384 GPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR 440 (488)
T ss_pred ccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcC
Confidence 77754422 4567899998653 4666665 7899999999875
No 77
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=90.36 E-value=0.45 Score=46.27 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-.+|+||..|+.|+|+.++++.++.. .....++||+||+.+
T Consensus 149 igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~ 204 (1201)
T TIGR02712 149 IGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA 204 (1201)
T ss_pred cCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4578999999999999999999844321 123469999999754
No 78
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=89.87 E-value=0.52 Score=39.55 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=47.0
Q ss_pred ccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCC-CC-----cccc
Q psy3858 70 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNF-IP-----EHEV 143 (180)
Q Consensus 70 l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~-~~-----~~~~ 143 (180)
+++|..|.. +-+.+|.+-..+|..| -|.+-. .....|+.||..|-.|.+|.++.+ -+ .+..
T Consensus 263 lsNK~lLpl----LW~~fPnHp~LL~t~F-~~~~~~--------~~~~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Y 329 (387)
T COG0754 263 LSNKALLPL----LWERFPNHPNLLPTYF-EPDDEE--------KLGESYVRKPLFGREGANVSIFEDAGKVLDKADGPY 329 (387)
T ss_pred hccccHHHH----HHHhCCCCcccccccC-CCCccc--------cchhhhhccccccccCCCeeEEecCCceeecCCCCc
Confidence 455654443 2344565555555333 333311 122348999999999999999977 21 2334
Q ss_pred cCCceEEeeecCCc
Q psy3858 144 MDQDASCQVYLSNV 157 (180)
Q Consensus 144 ~~~~~vvQ~YI~~P 157 (180)
..+.+|.|+|.+=|
T Consensus 330 g~eg~IyQe~~~Lp 343 (387)
T COG0754 330 GEEGMIYQEFYPLP 343 (387)
T ss_pred cccchhhhhhccCc
Confidence 56789999999866
No 79
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=89.19 E-value=0.54 Score=40.58 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------c--cCCceEEeeecCCc
Q psy3858 103 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------V--MDQDASCQVYLSNV 157 (180)
Q Consensus 103 e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~--~~~~~vvQ~YI~~P 157 (180)
+.++..++.++ -+-..|+||+.++.|+|+.++++.++.. . ....+|||+||+-+
T Consensus 131 ~~~ea~~~~~~-~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G~ 197 (426)
T PRK13789 131 EYSSSLSYLES-EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQ 197 (426)
T ss_pred CHHHHHHHHHh-cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCCe
Confidence 33444444332 3568999999999999999999843321 0 12369999999854
No 80
>PRK06524 biotin carboxylase-like protein; Validated
Probab=87.10 E-value=2.5 Score=37.26 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=31.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~------~~~~~~vvQ~YI~ 155 (180)
-+-..++||..|+.|+|+.++++.++.+ .....++||+||.
T Consensus 180 IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~ 226 (493)
T PRK06524 180 LGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR 226 (493)
T ss_pred CCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC
Confidence 4567899999999999999999954422 1224679999996
No 81
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.42 E-value=1.8 Score=41.77 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=40.4
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~ 156 (180)
.|+++.+.+ .+++.+..+ .-+-+.|+||..|..|+|+.++++..+.. .....++||+||+-
T Consensus 143 vp~~~~v~s-~~e~~~~~~-~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 143 VPRSGIAHS-MEEALEVAE-EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred CCCeeeeCC-HHHHHHHHH-HcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 566666633 233333222 23458999999999999999999844321 01357899999974
No 82
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=85.89 E-value=0.65 Score=41.27 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCccccchHhHHHHHHHHHhhC--C--------------------CCCCcccccCCCcchHHHHHHHHHhCCCceEEEc
Q psy3858 65 PGMANLESKAILAYHLNRMKYFF--P--------------------DEYNIFPKSWSLPRQWKEVISYNREHADETLILK 122 (180)
Q Consensus 65 pg~~~l~~K~~l~~~l~~~~~~~--~--------------------~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~K 122 (180)
||..-|+--..+++.+..---.+ | .....+|-+--.-++...+... .+.-+.+-++|
T Consensus 80 PGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~-A~eiGyPVlIK 158 (645)
T COG4770 80 PGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAI-AEEIGYPVLIK 158 (645)
T ss_pred CCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHH-HHhcCCcEEEE
Confidence 77777777777776654411111 0 1124455443333444444433 34466778889
Q ss_pred CCCCCCCCCEEEeCCCCcc-------------cccCCceEEeeecCCcc
Q psy3858 123 PTRGAEGKGIKILNFIPEH-------------EVMDQDASCQVYLSNVL 158 (180)
Q Consensus 123 P~~~~~G~GI~l~~~~~~~-------------~~~~~~~vvQ~YI~~P~ 158 (180)
.+.|..|+|+++..+..+. .+.+...++-+|+++|=
T Consensus 159 AsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PR 207 (645)
T COG4770 159 ASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPR 207 (645)
T ss_pred eccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCc
Confidence 9999999999999994331 14678899999999994
No 83
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=85.67 E-value=2 Score=41.33 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=40.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------c--cCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------V--MDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~--~~~~~vvQ~YI~~P 157 (180)
.|++..+.+ .++..+..+ .-+-+.|+||..|..|+|+.++++..+.. . ....++||+||.-+
T Consensus 142 vp~~~~v~s-~~e~~~~~~-~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 142 VPESEIAHS-VEEALAAAK-EIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGW 212 (1050)
T ss_pred CCCeeecCC-HHHHHHHHH-HhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCc
Confidence 456655533 233333222 23568999999999999999999843321 0 12579999999854
No 84
>PLN02257 phosphoribosylamine--glycine ligase
Probab=85.43 E-value=2 Score=37.17 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=32.3
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+...|+||..++.|+|+.++++.++.. .....++||+||+-+
T Consensus 137 g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G~ 191 (434)
T PLN02257 137 GAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE 191 (434)
T ss_pred CCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC
Confidence 458899999999999999999844321 013579999999854
No 85
>KOG0238|consensus
Probab=82.91 E-value=1 Score=39.74 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCCccccchHhHHHHHHHHHhhC--C--------------------CCCCcccccCCCcchHHHHHHHHHhCCCceEEE
Q psy3858 64 FPGMANLESKAILAYHLNRMKYFF--P--------------------DEYNIFPKSWSLPRQWKEVISYNREHADETLIL 121 (180)
Q Consensus 64 fpg~~~l~~K~~l~~~l~~~~~~~--~--------------------~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~ 121 (180)
.||..-|+--..++..+..---.| | .....+|-.--+..+.+...... ..-+.+-++
T Consensus 75 hPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a-~eIgyPvMi 153 (670)
T KOG0238|consen 75 HPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVA-REIGYPVMI 153 (670)
T ss_pred cCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHH-HhcCCcEEE
Confidence 588888888887777665421111 0 01233443222222333333332 345678899
Q ss_pred cCCCCCCCCCEEEeCCCCcc-------------cccCCceEEeeecCCccc
Q psy3858 122 KPTRGAEGKGIKILNFIPEH-------------EVMDQDASCQVYLSNVLL 159 (180)
Q Consensus 122 KP~~~~~G~GI~l~~~~~~~-------------~~~~~~~vvQ~YI~~P~L 159 (180)
|++.|..|+|+++..+..+. .+.+...++-+||+||==
T Consensus 154 Ka~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRH 204 (670)
T KOG0238|consen 154 KATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRH 204 (670)
T ss_pred EeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCce
Confidence 99999999999999984332 145678999999999953
No 86
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=82.90 E-value=1.5 Score=40.87 Aligned_cols=109 Identities=14% Similarity=0.233 Sum_probs=69.7
Q ss_pred hhhhhhcc-ccccc-CCCCccccchHhHHHHHHHHHhh-----------CC-----------CCCCcccccCCCcchHHH
Q psy3858 51 KEVISYNR-EHMNH-FPGMANLESKAILAYHLNRMKYF-----------FP-----------DEYNIFPKSWSLPRQWKE 106 (180)
Q Consensus 51 ~~~~~~~~-q~vNh-fpg~~~l~~K~~l~~~l~~~~~~-----------~~-----------~~~~~~P~t~~lp~e~~~ 106 (180)
++..+... ..++- .||...|+--..+++....---. ++ .....+|-|=-.+++.++
T Consensus 70 deII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee 149 (1149)
T COG1038 70 DEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEE 149 (1149)
T ss_pred HHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHH
Confidence 34444444 33444 47887777777777654331111 11 123567777666666666
Q ss_pred HHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCcc-------------cccCCceEEeeecCCcccc
Q psy3858 107 VISYNREHADETLILKPTRGAEGKGIKILNFIPEH-------------EVMDQDASCQVYLSNVLLI 160 (180)
Q Consensus 107 f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~-------------~~~~~~~vvQ~YI~~P~Li 160 (180)
..+.. +..+.+.|+|-+.|.+|||++++++..+. .+..+...|-+||+||-=|
T Consensus 150 ~~~fa-~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHI 215 (1149)
T COG1038 150 ALEFA-EEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHI 215 (1149)
T ss_pred HHHHH-HhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCccee
Confidence 55543 34567888899999999999999994321 1467789999999999543
No 87
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=82.66 E-value=0.89 Score=37.52 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=35.4
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCC------CCCCEEEeCCC--C------cccccCCceEEeeecC
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGA------EGKGIKILNFI--P------EHEVMDQDASCQVYLS 155 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~------~G~GI~l~~~~--~------~~~~~~~~~vvQ~YI~ 155 (180)
-+|+||.+.++.+..... -.-.-|+||..|. |.+.+...++. + ..+...+++|||++|.
T Consensus 128 ~~P~Ty~v~S~~d~~~~e----l~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 128 PYPKTYLVNSEIDTLVDE----LTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred CCcceEEecchhhhhhhh----eeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 389999998665544332 2235899997643 22333333331 0 0124678999999995
No 88
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=82.39 E-value=0.81 Score=38.16 Aligned_cols=38 Identities=32% Similarity=0.522 Sum_probs=25.2
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~ 155 (180)
..++.|+||..|++|- +.+..--.+. ....+|.|+||+
T Consensus 148 gekt~IlKPv~GaGG~-~el~~~~Ee~--~~~~~i~Qefi~ 185 (389)
T COG2232 148 GEKTLILKPVSGAGGL-VELVKFDEED--PPPGFIFQEFIE 185 (389)
T ss_pred cceeeEEeeccCCCce-eeeccccccc--CCcceehhhhcC
Confidence 4468999999998884 3333321111 125899999998
No 89
>PLN02735 carbamoyl-phosphate synthase
Probab=81.97 E-value=1.9 Score=41.74 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=39.5
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~ 156 (180)
.|+++.+.+ .++..+..++-..-+.|+||..+..|+|+.++++..+.. .....++|++||.-
T Consensus 159 vp~~~~v~s-~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 159 TPPSGIATT-LDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG 229 (1102)
T ss_pred CCCeeEeCC-HHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 455555532 233333222222258999999999999999999844321 12457899999985
No 90
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=81.46 E-value=0.63 Score=38.84 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=41.5
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhC-CCC--CCcccccCCC-cchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFF-PDE--YNIFPKSWSL-PRQWKEVISYNREHADETLILKPTRGAEGKGIKI 134 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~-~~~--~~~~P~t~~l-p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l 134 (180)
..+ +-||+..+..|..++-. -++.+.+ +++ ..-+|.+|.- |.+.+...+ .-..|++||..++.|.|+.+
T Consensus 233 ~ia-Na~G~gv~edkal~~~l-p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~-----~l~~lvvKp~~g~gg~~~~~ 305 (330)
T PF04174_consen 233 VIA-NAPGSGVAEDKALYAFL-PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLA-----NLDELVVKPADGYGGKGVYI 305 (330)
T ss_dssp EEE-S-TTTHHHHSTTTGGGH-HHHHHHHH-S--SSEE---EETTSHHHHHHHHH-----SGGGEEEEE--------EEE
T ss_pred EEE-CCCccchhcchhHHHHh-HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHh-----chhhcEEEecCCCCCCccee
Confidence 455 66899999999866543 3333332 221 2236666655 344444443 23468999999999999999
Q ss_pred eCCCCc--------ccccCCceEEe
Q psy3858 135 LNFIPE--------HEVMDQDASCQ 151 (180)
Q Consensus 135 ~~~~~~--------~~~~~~~~vvQ 151 (180)
-.+++. +......||+|
T Consensus 306 G~~~s~e~~~~~~~I~~~P~~yVAQ 330 (330)
T PF04174_consen 306 GPKLSAERRALRAEILARPHRYVAQ 330 (330)
T ss_dssp GGG--HHHHHHHHHHHHSGGGEEEE
T ss_pred CCcCCHHHHHHHHHHHhCccCCccC
Confidence 888663 11234578877
No 91
>KOG0369|consensus
Probab=80.61 E-value=1.5 Score=40.05 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=66.4
Q ss_pred hhhhhhcc-ccccc-CCCCccccchHhHHHHHHHHHhhC--C--------------------CCCCcccccCC---Ccch
Q psy3858 51 KEVISYNR-EHMNH-FPGMANLESKAILAYHLNRMKYFF--P--------------------DEYNIFPKSWS---LPRQ 103 (180)
Q Consensus 51 ~~~~~~~~-q~vNh-fpg~~~l~~K~~l~~~l~~~~~~~--~--------------------~~~~~~P~t~~---lp~e 103 (180)
+++.+... ..++- -||...|+-.+.+++.....--.+ | .....+|-|=- --+|
T Consensus 96 deii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~E 175 (1176)
T KOG0369|consen 96 DEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEE 175 (1176)
T ss_pred HHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHH
Confidence 34444444 55555 388888888888887665422111 1 11234554411 1123
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCcccc
Q psy3858 104 WKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNVLLI 160 (180)
Q Consensus 104 ~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P~Li 160 (180)
..+|.. .-+-.-|+|...|..|+|++++++..+.+ ..++...|-+||++|--|
T Consensus 176 A~eF~k----~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 176 ALEFVK----EYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred HHHHHH----hcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 334432 24567899999999999999999954422 467789999999999533
No 92
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=79.73 E-value=2.7 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCceEEEcCCCCC-CCCCEEEeCCCCccc-------ccCCceEEeeecCC
Q psy3858 115 ADETLILKPTRGA-EGKGIKILNFIPEHE-------VMDQDASCQVYLSN 156 (180)
Q Consensus 115 ~~~~wI~KP~~~~-~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~ 156 (180)
-+-+.|+||..++ .|+|+.++++.++.+ ..+..++|++||+.
T Consensus 155 ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 155 FGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred cCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 4568999998765 799999999844321 12357899999964
No 93
>PLN02735 carbamoyl-phosphate synthase
Probab=78.27 E-value=1.8 Score=41.88 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=33.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
-+-+.|+||+.+..|+|+.++.+..+.+ ....+++||+||+..
T Consensus 736 iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g 787 (1102)
T PLN02735 736 IGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDA 787 (1102)
T ss_pred cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence 4568999999999999999999944321 123469999999753
No 94
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=77.04 E-value=3.5 Score=39.82 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=40.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+.+ .++..+..+ .-+-+.|+||..+..|+|+.++++..+.. ....+++||+||+-.
T Consensus 143 vp~~~~v~s-~ee~~~~~~-~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~ 213 (1068)
T PRK12815 143 VPESEIVTS-VEEALAFAE-KIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW 213 (1068)
T ss_pred CCCceeeCC-HHHHHHHHH-HcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC
Confidence 567666632 333333222 24568999999999999999999843321 012479999999753
No 95
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=66.73 E-value=22 Score=29.82 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------ccCCceEEeeecCCccccCCceeE
Q psy3858 98 WSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------VMDQDASCQVYLSNVLLINGFKFD 166 (180)
Q Consensus 98 ~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~~~~~~vvQ~YI~~P~Li~g~KfD 166 (180)
|.+-..+++|.+.. ++-+-+-++||..++-|+|--++++..+.+ ......||-++| +||
T Consensus 132 Y~fa~s~~e~~~a~-~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv---------~fd 201 (394)
T COG0027 132 YRFADSLEELRAAV-EKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV---------KFD 201 (394)
T ss_pred ccccccHHHHHHHH-HHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe---------cce
Confidence 44444556666543 346678999999999999999999954422 346678999999 488
Q ss_pred EEEEEEe
Q psy3858 167 LRVYVLM 173 (180)
Q Consensus 167 ~R~yvlv 173 (180)
+-+=+|.
T Consensus 202 ~EiTlLt 208 (394)
T COG0027 202 FEITLLT 208 (394)
T ss_pred EEEEEEE
Confidence 7776554
No 96
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=65.88 E-value=6.1 Score=32.94 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=31.1
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCcc--------------cccCCceEEeeecCC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEH--------------EVMDQDASCQVYLSN 156 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~--------------~~~~~~~vvQ~YI~~ 156 (180)
+.+-|+|+...-+|+|-++..+-++. +.+-+++.+|+||--
T Consensus 150 dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G 204 (361)
T COG1759 150 DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG 204 (361)
T ss_pred CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec
Confidence 56899999988889999999983221 123457999999963
No 97
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=64.54 E-value=6.4 Score=32.59 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=31.4
Q ss_pred cccccCCCcchHHHHHHHHH-hCCCceEEEcCCCCC---CCCCEEEeCCCCcccccCCceEEeeecCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNR-EHADETLILKPTRGA---EGKGIKILNFIPEHEVMDQDASCQVYLSNV 157 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~-~~~~~~wI~KP~~~~---~G~GI~l~~~~~~~~~~~~~~vvQ~YI~~P 157 (180)
..|..-.+..+.++..+... .+-.-+.|+||...+ ....+.|+-+.+......-+.|+|+||..-
T Consensus 114 ~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQeFVNHg 182 (307)
T PF05770_consen 114 RVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDLKPPCVLQEFVNHG 182 (307)
T ss_dssp E-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT--SSEEEEE----T
T ss_pred cCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhcCCCEEEEEeecCC
Confidence 45665555544333333332 334558999997633 445677777733322234589999999864
No 98
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=63.79 E-value=12 Score=28.24 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCceEEEc-CCCCCCCCCEEEeCCCCccc-----ccCCceEEeeecC
Q psy3858 115 ADETLILK-PTRGAEGKGIKILNFIPEHE-----VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~K-P~~~~~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~ 155 (180)
-+-+.|+| +..|.-|+|-.++++..+.+ ....++|+.++|+
T Consensus 27 iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~ 73 (172)
T PF02222_consen 27 IGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP 73 (172)
T ss_dssp HTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---
T ss_pred cCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC
Confidence 35688999 67799999999999855432 2467899999996
No 99
>KOG3895|consensus
Probab=61.47 E-value=6.9 Score=33.09 Aligned_cols=106 Identities=12% Similarity=0.245 Sum_probs=64.0
Q ss_pred hhhhhhcc-cccccCC------CCccccchHhHHHHHHHHHhhC-CCCCCcccccCCCcchHHHHHHHHHhCCCceEEEc
Q psy3858 51 KEVISYNR-EHMNHFP------GMANLESKAILAYHLNRMKYFF-PDEYNIFPKSWSLPRQWKEVISYNREHADETLILK 122 (180)
Q Consensus 51 ~~~~~~~~-q~vNhfp------g~~~l~~K~~l~~~l~~~~~~~-~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~K 122 (180)
+++.++-- -.+-|+| ....+|.|-.+...|.+..+.. ++.+..+|.||.-. .++.. ..+.-.-++|
T Consensus 172 ~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn---HK~m~---s~~tyPvVVk 245 (488)
T KOG3895|consen 172 EDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN---HKEML---SQPTYPVVVK 245 (488)
T ss_pred cchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC---chhhc---cCCCCcEEEE
Confidence 34555433 3344555 4455677887777777665555 48888899988643 22321 2245678899
Q ss_pred CCCCCCCCCEEEeCC---CCccc----ccCCceEEeeecCCccccCCceeEEEE
Q psy3858 123 PTRGAEGKGIKILNF---IPEHE----VMDQDASCQVYLSNVLLINGFKFDLRV 169 (180)
Q Consensus 123 P~~~~~G~GI~l~~~---~~~~~----~~~~~~vvQ~YI~~P~Li~g~KfD~R~ 169 (180)
-..+..|-|-..+++ ++++. ......-+|.||+ -|+|+|+
T Consensus 246 vghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-------aKYDiri 292 (488)
T KOG3895|consen 246 VGHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-------AKYDIRI 292 (488)
T ss_pred ecccccccceeeecchhhhHhHHHHHHHHhhhhhcccccc-------ccceeeh
Confidence 999999999555555 22222 1122234566665 3899987
No 100
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.58 E-value=7.1 Score=36.49 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=31.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-+.|+||..+.-+.||.++++..+.+ ..+..++|++||.
T Consensus 609 lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~ 656 (809)
T PRK14573 609 FSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL 656 (809)
T ss_pred cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 4568999999999999999999844321 2346789999875
No 101
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=53.32 E-value=45 Score=28.92 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------c--cCCceEEeeecC
Q psy3858 103 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------V--MDQDASCQVYLS 155 (180)
Q Consensus 103 e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~--~~~~~vvQ~YI~ 155 (180)
+.++..+++++ .+..+.+||+..+.|+|+.|.....+.. . ....+||-+|++
T Consensus 126 ~~e~a~ayi~~-~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~ 190 (428)
T COG0151 126 DPEEAKAYIDE-KGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD 190 (428)
T ss_pred CHHHHHHHHHH-cCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc
Confidence 44444455443 4456999999999999999999844321 1 114578888887
No 102
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=42.22 E-value=31 Score=26.76 Aligned_cols=88 Identities=15% Similarity=0.320 Sum_probs=46.3
Q ss_pred cccchHhHHHHHHHHHhhC-CCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCC---ccc--
Q psy3858 69 NLESKAILAYHLNRMKYFF-PDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIP---EHE-- 142 (180)
Q Consensus 69 ~l~~K~~l~~~l~~~~~~~-~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~---~~~-- 142 (180)
.++.|--+...|.+.++.+ ++.|..++.||.-... ++. ..+.-+.++|-..++.|-|=..+++.. +..
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~--em~----s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sl 81 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHR--EML----SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASL 81 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGG--GGC----S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHhCCcccccceeeecCChh--hhc----cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHH
Confidence 3456665555555555544 6678888888754322 221 225668999999999999977777722 211
Q ss_pred -ccCCceE-EeeecCCccccCCceeEEEE
Q psy3858 143 -VMDQDAS-CQVYLSNVLLINGFKFDLRV 169 (180)
Q Consensus 143 -~~~~~~v-vQ~YI~~P~Li~g~KfD~R~ 169 (180)
.....|+ +-.|| ..|+|+|+
T Consensus 82 l~~~~~Y~T~EPfI-------d~kyDirv 103 (203)
T PF02750_consen 82 LAITKDYATTEPFI-------DAKYDIRV 103 (203)
T ss_dssp HHHHTS-EEEEE----------EEEEEEE
T ss_pred HHhcCceEEeeccc-------cceeEEEE
Confidence 1112333 33344 45999998
No 103
>KOG3490|consensus
Probab=32.68 E-value=11 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCceeccC-CCCCcchhhhHHHHHHHhhhhh
Q psy3858 3 LHHRVNHF-PGMANLESKAILAYHLNRMKYF 32 (180)
Q Consensus 3 ~~q~vn~f-p~~~~~~~k~~l~~~l~~m~~~ 32 (180)
-||||-|| ||++-+.....|...+.+.-..
T Consensus 67 kWqri~~f~~G~YAi~VsG~Lpe~~v~~l~~ 97 (111)
T KOG3490|consen 67 KWQRIGRFTPGMYAISVSGVLPEEVVESLKS 97 (111)
T ss_pred HHHhhccccCceEEEEecccCCHHHHHHHHh
Confidence 48999887 8999999888887776544443
No 104
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=32.55 E-value=49 Score=28.47 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=28.6
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~ 155 (180)
.+-+.|+||..+.+|.|-.++.+-.+.. ....+.+++++|.
T Consensus 149 ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~ 198 (400)
T COG0458 149 IGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII 198 (400)
T ss_pred cCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeec
Confidence 3458999999999999999999832211 1123566677665
No 105
>KOG0782|consensus
Probab=32.36 E-value=15 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=25.0
Q ss_pred CCCceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEee
Q psy3858 114 HADETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQV 152 (180)
Q Consensus 114 ~~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~ 152 (180)
+....||+||+.+---+-+.++-+.+.+- ..+.-++|-
T Consensus 350 ~k~rpFvikPtsSplmkPLLVFVNPKSGG-NqGsK~lq~ 387 (1004)
T KOG0782|consen 350 NKGRPFVIKPTSSPLMKPLLVFVNPKSGG-NQGSKALQT 387 (1004)
T ss_pred ccCCceEEccCCCCCCCceEEEecCCCCC-cchHHHHHH
Confidence 34559999999888888888887755432 222344444
No 106
>PF15327 Tankyrase_bdg_C: Tankyrase binding protein C terminal domain
Probab=28.05 E-value=27 Score=26.40 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=10.7
Q ss_pred CCceeccCCCCCc
Q psy3858 3 LHHRVNHFPGMAN 15 (180)
Q Consensus 3 ~~q~vn~fp~~~~ 15 (180)
--||||=||||.-
T Consensus 97 ~~qrvplFPGmdP 109 (177)
T PF15327_consen 97 QPQRVPLFPGMDP 109 (177)
T ss_pred CCcccccCCCCCH
Confidence 3599999999954
No 107
>KOG3288|consensus
Probab=21.75 E-value=63 Score=26.16 Aligned_cols=56 Identities=23% Similarity=0.112 Sum_probs=30.4
Q ss_pred eEEEcCCCCCCCCCEEEeCCCCccc---ccCCceEEeeecCCccccCCceeEEEEEEEeee--ecCC
Q psy3858 118 TLILKPTRGAEGKGIKILNFIPEHE---VMDQDASCQVYLSNVLLINGFKFDLRVYVLMTS--KPNP 179 (180)
Q Consensus 118 ~wI~KP~~~~~G~GI~l~~~~~~~~---~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlvts--~~Pl 179 (180)
.||.|++.=.+.-.|-++.+.-..+ .+-+...+-+|=+ .+-||-|+|.+-.+ +|||
T Consensus 170 ~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fge------d~~~~~rv~llydGIHYD~l 230 (307)
T KOG3288|consen 170 AWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGE------DKNFDNRVLLLYDGIHYDPL 230 (307)
T ss_pred HHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCC------CCCCCceEEEEecccccChh
Confidence 7999998533333344444411111 1122344445544 33599999998866 4554
No 108
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.47 E-value=58 Score=25.19 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=24.0
Q ss_pred ccccCCC--cchHHHHHHHHHhCCCceEEEcCCCCC--CCC--CEEEeCCCC
Q psy3858 94 FPKSWSL--PRQWKEVISYNREHADETLILKPTRGA--EGK--GIKILNFIP 139 (180)
Q Consensus 94 ~P~t~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~--~G~--GI~l~~~~~ 139 (180)
+|+..+. |+|..+.. +.-....|++||...+ ||+ ||+++++..
T Consensus 18 vp~g~~a~s~eea~~~~---~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ 66 (202)
T PF08442_consen 18 VPRGVVATSPEEAREAA---KELGGKPLVVKAQVLAGGRGKAGGVKIAKSPE 66 (202)
T ss_dssp --SEEEESSHHHHHHHH---HHHTTSSEEEEE-SSSSTTTTTTCEEEESSHH
T ss_pred CCCeeecCCHHHHHHHH---HHhCCCcEEEEEeEeecCcccCCceeecCCHH
Confidence 6666554 44443333 3335568999997644 443 599998843
Done!