Query psy3858
Match_columns 180
No_of_seqs 197 out of 1215
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:15:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 3.1E-39 1.1E-43 268.3 8.3 164 14-180 12-215 (380)
2 3tig_A TTL protein; ATP-grAsp, 98.7 6.3E-09 2.2E-13 86.4 2.0 47 2-49 60-107 (380)
3 1i7n_A Synapsin II; synapse, p 97.8 1.9E-05 6.5E-10 63.9 5.4 51 115-172 151-208 (309)
4 1pk8_A RAT synapsin I; ATP bin 97.7 3.4E-05 1.1E-09 64.8 4.9 51 115-172 263-320 (422)
5 2q7d_A Inositol-tetrakisphosph 97.7 5.8E-05 2E-09 62.0 6.0 106 59-172 103-214 (346)
6 1gsa_A Glutathione synthetase; 97.6 6.9E-05 2.4E-09 59.4 5.9 72 93-172 134-214 (316)
7 1z2n_X Inositol 1,3,4-trisphos 97.6 0.00011 3.6E-09 59.0 5.8 89 70-172 96-188 (324)
8 2p0a_A Synapsin-3, synapsin II 97.5 5.1E-05 1.8E-09 62.2 3.7 51 115-172 168-225 (344)
9 3n6x_A Putative glutathionylsp 97.4 0.00013 4.5E-09 62.2 4.2 108 59-173 308-435 (474)
10 1iow_A DD-ligase, DDLB, D-ALA\ 97.1 0.00052 1.8E-08 54.2 5.2 69 94-172 111-193 (306)
11 1uc8_A LYSX, lysine biosynthes 97.1 9.9E-05 3.4E-09 57.6 0.3 88 70-172 86-184 (280)
12 2pn1_A Carbamoylphosphate synt 97.1 0.0006 2.1E-08 54.7 4.9 60 94-155 129-191 (331)
13 2cqy_A Propionyl-COA carboxyla 96.9 0.00076 2.6E-08 45.0 3.7 62 94-157 23-99 (108)
14 3ln6_A Glutathione biosynthesi 96.9 0.0011 3.8E-08 59.6 5.7 70 94-172 499-578 (750)
15 4dim_A Phosphoribosylglycinami 96.8 0.0019 6.4E-08 53.3 5.8 62 94-157 124-194 (403)
16 3t7a_A Inositol pyrophosphate 96.6 0.002 6.9E-08 51.9 4.4 107 53-172 77-216 (330)
17 2io8_A Bifunctional glutathion 96.4 0.0076 2.6E-07 53.0 7.4 89 69-172 494-588 (619)
18 3ln7_A Glutathione biosynthesi 96.3 0.0021 7.1E-08 57.9 3.3 70 94-172 504-584 (757)
19 4eg0_A D-alanine--D-alanine li 96.2 0.0039 1.3E-07 49.8 4.2 62 94-155 122-192 (317)
20 2i87_A D-alanine-D-alanine lig 96.0 0.0066 2.2E-07 49.6 4.6 51 115-173 170-227 (364)
21 3df7_A Putative ATP-grAsp supe 96.0 0.005 1.7E-07 49.2 3.8 35 115-155 132-166 (305)
22 3ax6_A Phosphoribosylaminoimid 95.9 0.016 5.5E-07 47.3 6.6 57 94-155 115-173 (380)
23 3ouz_A Biotin carboxylase; str 95.8 0.01 3.4E-07 49.8 5.2 62 94-157 134-210 (446)
24 2ip4_A PURD, phosphoribosylami 95.7 0.012 4.2E-07 48.7 5.2 62 94-157 116-186 (417)
25 1e4e_A Vancomycin/teicoplanin 95.7 0.013 4.3E-07 47.4 5.0 50 116-173 165-221 (343)
26 4ffl_A PYLC; amino acid, biosy 95.5 0.02 6.7E-07 46.5 5.7 40 116-155 125-164 (363)
27 3r5x_A D-alanine--D-alanine li 95.5 0.006 2.1E-07 48.3 2.5 40 116-155 133-179 (307)
28 2pbz_A Hypothetical protein; N 95.5 0.0065 2.2E-07 49.2 2.7 40 115-155 124-167 (320)
29 4fu0_A D-alanine--D-alanine li 95.5 0.014 4.9E-07 47.5 4.8 62 94-155 154-223 (357)
30 2yw2_A Phosphoribosylamine--gl 95.5 0.011 3.7E-07 49.1 4.1 61 94-156 117-190 (424)
31 2dzd_A Pyruvate carboxylase; b 95.5 0.016 5.4E-07 48.7 5.1 42 116-157 157-211 (461)
32 2r85_A PURP protein PF1517; AT 95.5 0.007 2.4E-07 48.2 2.7 40 117-156 127-178 (334)
33 3orq_A N5-carboxyaminoimidazol 95.3 0.037 1.3E-06 45.4 6.7 42 115-156 144-191 (377)
34 1ulz_A Pyruvate carboxylase N- 95.2 0.026 8.7E-07 47.2 5.5 42 116-157 151-205 (451)
35 2z04_A Phosphoribosylaminoimid 95.2 0.015 5.1E-07 47.2 3.8 40 116-155 126-172 (365)
36 2vpq_A Acetyl-COA carboxylase; 95.1 0.068 2.3E-06 44.6 7.9 42 116-157 151-205 (451)
37 3lp8_A Phosphoribosylamine-gly 95.1 0.027 9.1E-07 47.4 5.3 61 94-156 138-211 (442)
38 2fb9_A D-alanine:D-alanine lig 95.1 0.017 5.7E-07 46.4 3.8 40 116-155 150-196 (322)
39 1kjq_A GART 2, phosphoribosylg 95.0 0.024 8.1E-07 46.3 4.7 40 116-155 148-198 (391)
40 2yrx_A Phosphoribosylglycinami 95.0 0.017 5.8E-07 48.4 3.7 41 116-156 158-211 (451)
41 2qk4_A Trifunctional purine bi 94.9 0.024 8.1E-07 47.5 4.4 61 94-156 143-217 (452)
42 2xcl_A Phosphoribosylamine--gl 94.9 0.016 5.3E-07 48.1 3.2 61 94-156 117-190 (422)
43 3k3p_A D-alanine--D-alanine li 94.8 0.015 5.2E-07 48.1 3.0 41 115-155 200-247 (383)
44 3vmm_A Alanine-anticapsin liga 94.8 0.029 1E-06 47.6 4.9 62 94-157 154-234 (474)
45 2pvp_A D-alanine-D-alanine lig 94.8 0.04 1.4E-06 45.2 5.5 41 115-155 184-231 (367)
46 3aw8_A PURK, phosphoribosylami 94.8 0.031 1.1E-06 45.4 4.7 60 94-155 111-176 (369)
47 2w70_A Biotin carboxylase; lig 94.8 0.018 6.1E-07 48.2 3.3 42 116-157 153-207 (449)
48 3k5i_A Phosphoribosyl-aminoimi 94.6 0.028 9.7E-07 46.5 4.1 61 94-155 138-205 (403)
49 3se7_A VANA; alpha-beta struct 94.5 0.031 1.1E-06 45.2 4.1 51 116-174 165-222 (346)
50 1ehi_A LMDDL2, D-alanine:D-lac 94.5 0.036 1.2E-06 45.5 4.5 40 116-155 174-220 (377)
51 2vob_A Trypanothione synthetas 94.5 0.07 2.4E-06 47.2 6.4 89 69-172 509-603 (652)
52 3mjf_A Phosphoribosylamine--gl 94.4 0.044 1.5E-06 45.9 4.8 60 94-155 122-194 (431)
53 4e4t_A Phosphoribosylaminoimid 94.3 0.013 4.5E-07 48.9 1.5 40 117-156 172-217 (419)
54 3tqt_A D-alanine--D-alanine li 94.3 0.025 8.7E-07 46.5 3.2 41 115-155 178-226 (372)
55 3vot_A L-amino acid ligase, BL 94.2 0.027 9.4E-07 46.7 3.1 43 115-157 144-204 (425)
56 3jrx_A Acetyl-COA carboxylase 94.1 0.044 1.5E-06 47.9 4.5 43 115-157 243-294 (587)
57 3lwb_A D-alanine--D-alanine li 94.1 0.051 1.7E-06 44.6 4.6 40 116-155 188-234 (373)
58 2dwc_A PH0318, 433AA long hypo 94.1 0.023 7.7E-07 47.3 2.4 40 116-155 156-206 (433)
59 3e5n_A D-alanine-D-alanine lig 94.0 0.048 1.7E-06 45.0 4.2 40 116-155 198-244 (386)
60 1vkz_A Phosphoribosylamine--gl 93.9 0.053 1.8E-06 44.9 4.4 60 94-155 121-193 (412)
61 1w96_A ACC, acetyl-coenzyme A 93.8 0.062 2.1E-06 46.4 4.7 42 116-157 234-284 (554)
62 3glk_A Acetyl-COA carboxylase 93.7 0.047 1.6E-06 47.2 3.8 42 116-157 228-278 (540)
63 3q2o_A Phosphoribosylaminoimid 93.5 0.031 1.1E-06 45.9 2.3 41 116-156 147-193 (389)
64 3i12_A D-alanine-D-alanine lig 93.3 0.05 1.7E-06 44.4 3.2 40 116-155 179-225 (364)
65 3u9t_A MCC alpha, methylcroton 93.0 0.019 6.4E-07 51.1 0.1 43 115-157 177-232 (675)
66 3n6r_A Propionyl-COA carboxyla 92.2 0.035 1.2E-06 49.4 0.7 43 115-157 151-206 (681)
67 1a9x_A Carbamoyl phosphate syn 91.4 0.14 4.7E-06 47.8 3.9 62 94-157 689-759 (1073)
68 3hbl_A Pyruvate carboxylase; T 90.0 0.17 5.9E-06 47.6 3.2 43 115-157 154-209 (1150)
69 1a9x_A Carbamoyl phosphate syn 89.4 0.29 1E-05 45.6 4.2 62 94-157 143-213 (1073)
70 2r7k_A 5-formaminoimidazole-4- 88.4 0.1 3.5E-06 42.8 0.4 39 117-155 151-203 (361)
71 3eth_A Phosphoribosylaminoimid 87.1 0.51 1.8E-05 38.4 3.9 41 116-156 114-158 (355)
72 3va7_A KLLA0E08119P; carboxyla 87.0 0.14 4.7E-06 48.5 0.4 42 115-156 179-233 (1236)
73 2qf7_A Pyruvate carboxylase pr 83.8 0.24 8.1E-06 46.7 0.3 43 115-157 170-225 (1165)
74 1wr2_A Hypothetical protein PH 53.3 3.8 0.00013 30.9 0.8 40 116-155 56-117 (238)
75 3kxt_A Chromatin protein CREN7 31.9 39 0.0013 19.6 2.6 24 114-138 17-40 (56)
76 3ufx_B Succinyl-COA synthetase 31.2 28 0.00096 28.6 2.7 40 116-155 39-95 (397)
77 2fp4_B Succinyl-COA ligase [GD 29.4 55 0.0019 26.8 4.2 20 118-137 42-72 (395)
78 3fch_A Carboxysome shell prote 28.6 21 0.00072 27.5 1.3 16 163-178 77-92 (281)
79 3pm7_A Uncharacterized protein 25.0 33 0.0011 21.6 1.5 7 164-170 38-44 (80)
80 4g06_A Uncharacterized protein 23.2 37 0.0013 21.3 1.5 7 164-170 45-51 (79)
81 3r8n_I 30S ribosomal protein S 22.8 55 0.0019 22.5 2.5 47 118-171 16-64 (127)
82 1g1s_C PSGL-1 peptide, PSGL-1; 20.9 27 0.00092 16.9 0.4 8 90-97 9-16 (28)
83 2l3a_A Uncharacterized protein 20.8 45 0.0015 21.1 1.5 7 164-170 40-46 (82)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=3.1e-39 Score=268.32 Aligned_cols=164 Identities=23% Similarity=0.224 Sum_probs=129.4
Q ss_pred CcchhhhHHHHHHHhhh-hhCCC-ccccCCccccCc--ccchhhhhh-cc-cccccCCCCccccchHhHHHHHHHHHhhC
Q psy3858 14 ANLESKAILAYHLNRMK-YFFPD-EYNIFPKSWSLP--RQWKEVISY-NR-EHMNHFPGMANLESKAILAYHLNRMKYFF 87 (180)
Q Consensus 14 ~~~~~k~~l~~~l~~m~-~~~~~-~~~~~p~~W~~~--~~~~~~~~~-~~-q~vNhfpg~~~l~~K~~l~~~l~~~~~~~ 87 (180)
...+..+.+.+.|..+| |..+. +...|+..|... ..+..+... .. |+||||||+.+||+|+.|+++|++++ .+
T Consensus 12 ~~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~ 90 (380)
T 3tig_A 12 ENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-EL 90 (380)
T ss_dssp SSCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HH
T ss_pred CCccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hc
Confidence 35678899999999999 76654 456788889862 224454443 45 99999999999999999999999954 45
Q ss_pred CCCCCcccccCCC-cch-----------------------HHHHHHHHH----hCCCceEEEcCCCCCCCCCEEEeCCCC
Q psy3858 88 PDEYNIFPKSWSL-PRQ-----------------------WKEVISYNR----EHADETLILKPTRGAEGKGIKILNFIP 139 (180)
Q Consensus 88 ~~~~~~~P~t~~l-p~e-----------------------~~~f~~~~~----~~~~~~wI~KP~~~~~G~GI~l~~~~~ 139 (180)
++.++|+|+||.| |.+ +++|.++++ .+.+++||+||+++++|+||.++++++
T Consensus 91 ~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~ 170 (380)
T 3tig_A 91 TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDAT 170 (380)
T ss_dssp HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSH
T ss_pred ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHH
Confidence 7889999999999 764 456777654 356789999999999999999999976
Q ss_pred ccc----ccCCceEEeeecCCcccc--CCceeEEEEEEEeeeecCCC
Q psy3858 140 EHE----VMDQDASCQVYLSNVLLI--NGFKFDLRVYVLMTSKPNPT 180 (180)
Q Consensus 140 ~~~----~~~~~~vvQ~YI~~P~Li--~g~KfD~R~yvlvts~~Pl~ 180 (180)
+.. .....+|||+||++|+|| +|+|||||+|||||| ||+
T Consensus 171 ~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~ 215 (380)
T 3tig_A 171 ELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYN 215 (380)
T ss_dssp HHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCC
T ss_pred HHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCE
Confidence 542 235689999999999999 999999999999998 775
No 2
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.65 E-value=6.3e-09 Score=86.43 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCCceeccCCCCCcchhhhHHHHHHHhhhhhCCCccccCCccccC-ccc
Q psy3858 2 SLHHRVNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSL-PRQ 49 (180)
Q Consensus 2 ~~~q~vn~fp~~~~~~~k~~l~~~l~~m~~~~~~~~~~~p~~W~~-~~~ 49 (180)
+++|+||||||+.+||||+.|++++++|. ...+.++++|.+|.+ |.+
T Consensus 60 ~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~~~~~f~P~ty~L~P~~ 107 (380)
T 3tig_A 60 GLVQLVNYYRGADKLCRKASLVKLIKTSP-ELTETCTWFPESYVIYPTN 107 (380)
T ss_dssp TCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHHTTCTTSCCEEECCC--
T ss_pred CcceEEeecCCcccccccHHHHHHHHHhh-hcccccCcCCcceeeCccc
Confidence 57899999999999999999999999964 457778999999998 654
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.83 E-value=1.9e-05 Score=63.92 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=40.2
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.+.+.|+||..|++|+|+.++++..+.+ .....+++|+||+ + ++|+|++|+
T Consensus 151 ~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~Vv 208 (309)
T 1i7n_A 151 PTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-A------KYDIRVQKI 208 (309)
T ss_dssp CCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE
T ss_pred cCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEE
Confidence 4569999999999999999999943221 1234677999997 3 699999986
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=97.70 E-value=3.4e-05 Score=64.83 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=40.1
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.+-..|+||..|++|+|+.++++.++.+ .....+++|+||+ + ++|+|++|+
T Consensus 263 ~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~------g~DIRv~VV 320 (422)
T 1pk8_A 263 TTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-A------KYDVRVQKI 320 (422)
T ss_dssp SSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-E------EEEEEEEEE
T ss_pred cCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-C------CceEEEEEE
Confidence 4458999999999999999999943221 1234577999998 3 699999986
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.68 E-value=5.8e-05 Score=61.98 Aligned_cols=106 Identities=10% Similarity=0.169 Sum_probs=66.9
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCCcc----hHHHHHHHHHhCCCceEEEcCCCC--CCCCCE
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPR----QWKEVISYNREHADETLILKPTRG--AEGKGI 132 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~----e~~~f~~~~~~~~~~~wI~KP~~~--~~G~GI 132 (180)
-.+|-..+...+..|-.+.+.|.+..-.....-=-.|+|+.+.. +..+..+ ...-+-..|+||..| +.|.|+
T Consensus 103 ~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~--~~~lg~P~VvKP~~g~Gs~s~~v 180 (346)
T 2q7d_A 103 IVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLE--KNGLTFPFICKTRVAHGTNSHEM 180 (346)
T ss_dssp EEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHH--HTTCCSSEEEECSBCSSTTCCEE
T ss_pred EEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHH--hcCCCCCEEEEecCCCcceeeee
Confidence 44555555555678888888877653211111123788888854 3333221 123456899999854 448899
Q ss_pred EEeCCCCcccccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 133 KILNFIPEHEVMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 133 ~l~~~~~~~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.++.+..+......+++|||||+.+ | .|+|+||+
T Consensus 181 ~~v~~~~~l~~~~~~~lvQefI~~~----G--~dirv~Vv 214 (346)
T 2q7d_A 181 AIVFNQEGLNAIQPPCVVQNFINHN----A--VLYKVFVV 214 (346)
T ss_dssp EEECSGGGTTC--CCEEEEECCCCT----T--EEEEEEEE
T ss_pred EEecCHHHHHhcCCCEEEEEeeCCC----C--eEEEEEEE
Confidence 9998855444345679999999753 4 79999986
No 6
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.64 E-value=6.9e-05 Score=59.44 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=47.8
Q ss_pred cccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeC-CCCccc--------ccCCceEEeeecCCccccCCc
Q psy3858 93 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILN-FIPEHE--------VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 93 ~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~-~~~~~~--------~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
..|+|+.+.. .+++.+...+. + .+|+||..|+.|+|+.+++ +..+.. ....++++|+||+.+ .
T Consensus 134 ~~P~t~~~~~-~~~~~~~~~~~-~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~ 205 (316)
T 1gsa_A 134 LTPETLVTRN-KAQLKAFWEKH-S-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----K 205 (316)
T ss_dssp TSCCEEEESC-HHHHHHHHHHH-S-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----G
T ss_pred cCCCeEEeCC-HHHHHHHHHHc-C-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----C
Confidence 5688876632 23333322222 2 7999999999999999998 533211 123689999999832 2
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
.+|+|++++
T Consensus 206 ~~~~~v~~~ 214 (316)
T 1gsa_A 206 DGDKRVLVV 214 (316)
T ss_dssp GCEEEEEEE
T ss_pred CCCEEEEEE
Confidence 688888774
No 7
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.56 E-value=0.00011 Score=59.04 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=57.0
Q ss_pred ccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhC-CCceEEEcCCCCCCC---CCEEEeCCCCcccccC
Q psy3858 70 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREH-ADETLILKPTRGAEG---KGIKILNFIPEHEVMD 145 (180)
Q Consensus 70 l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~-~~~~wI~KP~~~~~G---~GI~l~~~~~~~~~~~ 145 (180)
...|..+.+.+++. + =-+|+|+.+... ++..+..... -+..+|+||..|+.| .|+.++++..+.....
T Consensus 96 ~~dK~~~~~~l~~~----g---i~~P~~~~~~~~-~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~~ 167 (324)
T 1z2n_X 96 MSSREEINALLIKN----N---IPIPNSFSVKSK-EEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIH 167 (324)
T ss_dssp HTBHHHHHHHHHHT----T---CCCSCEEEESSH-HHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTTCC
T ss_pred HhCHHHHHHHHHHC----C---CCCCCEEEeCCH-HHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhhcC
Confidence 34565555555431 1 127888776432 3333333322 235899999999999 9999998854443345
Q ss_pred CceEEeeecCCccccCCceeEEEEEEE
Q psy3858 146 QDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 146 ~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.++++|+||+.+ .+|+|++|+
T Consensus 168 ~~~lvqe~i~~~------g~~~~v~v~ 188 (324)
T 1z2n_X 168 FPCLCQHYINHN------NKIVKVFCI 188 (324)
T ss_dssp SSEEEEECCCCT------TCEEEEEEE
T ss_pred CCEEEEEccCCC------CcEEEEEEE
Confidence 689999999742 378888874
No 8
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.53 E-value=5.1e-05 Score=62.25 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=40.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.+-..|+||..|++|+|+.++++..+.+ .....+++|+||+ + ++|+|++|+
T Consensus 168 ~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VV 225 (344)
T 2p0a_A 168 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKI 225 (344)
T ss_dssp SSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE
T ss_pred cCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEE
Confidence 3458999999999999999999943221 1234577999997 3 699999986
No 9
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.36 E-value=0.00013 Score=62.16 Aligned_cols=108 Identities=22% Similarity=0.256 Sum_probs=63.5
Q ss_pred cccccCCCCccccchHhHHHHHHHHHhhC-CCC--CCcccccCCC-cchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEE
Q psy3858 59 EHMNHFPGMANLESKAILAYHLNRMKYFF-PDE--YNIFPKSWSL-PRQWKEVISYNREHADETLILKPTRGAEGKGIKI 134 (180)
Q Consensus 59 q~vNhfpg~~~l~~K~~l~~~l~~~~~~~-~~~--~~~~P~t~~l-p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l 134 (180)
-.+|. ||+..+..|..++-. -.+.+.+ +++ ...+|.+|.- +.+.+.+.+ ....|++||..++.|.|+.+
T Consensus 308 ~i~Na-~gsgv~~dKal~a~L-p~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~-----~l~~lViKp~~g~gg~gv~i 380 (474)
T 3n6x_A 308 TLANA-VGTGVADDKDTYIYV-PEMIRFYLGEEPILSNVPTYQLSKADDLKYVLD-----NLAELVVKEVQGSGGYGMLV 380 (474)
T ss_dssp EEESC-TTTHHHHSTTTGGGH-HHHHHHHHCSCCSSEECCCEETTSHHHHHHHHH-----SGGGEEEEECCCE-----EE
T ss_pred EEeCC-CchhhhcCcHHHHHh-HHHHHHhCCHhhhccCCCceecCCHHHHHHHHh-----chhheEEEecCCCCCCceEE
Confidence 56776 588889999854432 2222222 222 3456644443 223333332 33579999999999999988
Q ss_pred eCCCCccc---------ccCCceEEeeecCC---ccccCC----ceeEEEEEEEe
Q psy3858 135 LNFIPEHE---------VMDQDASCQVYLSN---VLLING----FKFDLRVYVLM 173 (180)
Q Consensus 135 ~~~~~~~~---------~~~~~~vvQ~YI~~---P~Li~g----~KfD~R~yvlv 173 (180)
-...+..+ .....||+|++|.- |.+.+| +++|+|.|++-
T Consensus 381 G~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~ 435 (474)
T 3n6x_A 381 GPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLS 435 (474)
T ss_dssp GGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEE
T ss_pred CCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEc
Confidence 87754321 23445999999973 344454 79999999985
No 10
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.13 E-value=0.00052 Score=54.23 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=46.1
Q ss_pred ccccCCCcchHHHHHH-------HHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccc
Q psy3858 94 FPKSWSLPRQWKEVIS-------YNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLL 159 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~-------~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~L 159 (180)
.|+|+.+... ++.+ .+.+.-+..+|+||..|+.|+|+.++++..+.. .....++||+||+
T Consensus 111 ~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~---- 184 (306)
T 1iow_A 111 VAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS---- 184 (306)
T ss_dssp BCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC----
T ss_pred CCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC----
Confidence 6777766433 2222 012234458999999999999999999854422 1256899999997
Q ss_pred cCCceeEEEEEEE
Q psy3858 160 INGFKFDLRVYVL 172 (180)
Q Consensus 160 i~g~KfD~R~yvl 172 (180)
|+ ++++.++
T Consensus 185 --g~--e~~v~~~ 193 (306)
T 1iow_A 185 --GP--EFTVAIL 193 (306)
T ss_dssp --CC--EEEEEEE
T ss_pred --CE--EEEEEEE
Confidence 43 6666654
No 11
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.06 E-value=9.9e-05 Score=57.57 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=52.6
Q ss_pred ccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------
Q psy3858 70 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE------- 142 (180)
Q Consensus 70 l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~------- 142 (180)
...|..+.+.+++.- .+ .|+|+.+... +++.+...+ -+..+|+||..|+.|+|+.++++..+..
T Consensus 86 ~~dK~~~~~~l~~~g--i~-----~p~~~~~~~~-~~~~~~~~~-~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~ 156 (280)
T 1uc8_A 86 CGDKWATSVALAKAG--LP-----QPKTALATDR-EEALRLMEA-FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKE 156 (280)
T ss_dssp HHBHHHHHHHHHHTT--CC-----CCCEEEESSH-HHHHHHHHH-HCSSEEEECSBCCBCSHHHHHHHHHC---------
T ss_pred hCCHHHHHHHHHHcC--cC-----CCCeEeeCCH-HHHHHHHHH-hCCCEEEEECCCCCcccceecccccccchhhhhHh
Confidence 345665555554421 12 5777766332 233222222 2348999999999999999887622111
Q ss_pred -c---cCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 143 -V---MDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 143 -~---~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
. ....++||+||+. ..+|+|++++
T Consensus 157 ~~~~~~~~~~lvqe~i~~------~~~e~~v~v~ 184 (280)
T 1uc8_A 157 VLGGFQHQLFYIQEYVEK------PGRDIRVFVV 184 (280)
T ss_dssp ---CTTTTCEEEEECCCC------SSCCEEEEEE
T ss_pred hhcccCCCcEEEEeccCC------CCceEEEEEE
Confidence 0 1467999999983 3567777663
No 12
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.05 E-value=0.0006 Score=54.67 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=27.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---~~~~~~vvQ~YI~ 155 (180)
.|+|+..+++..++.. ....+..+|+||..|+.|+|+.++++..+.. .....++||+||+
T Consensus 129 ~p~~~~~~~~~~~~~~--~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~lvee~i~ 191 (331)
T 2pn1_A 129 HARTYATMASFEEALA--AGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLV 191 (331)
T ss_dssp CCCEESSHHHHHHHHH--TTSSCSCEEEEESBC-----------------------CEEEEECCC
T ss_pred CCcEEecHHHhhhhhh--cccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhCCCeEEEecCC
Confidence 6777765544333321 1234568999999999999999998854432 1235799999998
No 13
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00076 Score=45.04 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=40.0
Q ss_pred ccccC--CCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 94 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~--~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
.|+++ .. .+.++..+.... -+.++|+||..++.|+|+.++++..+.. .....++||+||+.+
T Consensus 23 ~p~~~~~~~-~~~~~~~~~~~~-~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 23 TIPGFDGVV-KDAEEAVRIARE-IGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp CCSCCCSCB-SSHHHHHHHHHH-HCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCCCccccc-CCHHHHHHHHHh-cCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 56666 33 233333332221 3458999999999999999998833211 114679999999854
No 14
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=96.90 E-value=0.0011 Score=59.62 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=47.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc---cc-------ccCCceEEeeecCCccccCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE---HE-------VMDQDASCQVYLSNVLLINGF 163 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~---~~-------~~~~~~vvQ~YI~~P~Li~g~ 163 (180)
+|++...... ++..+.+....+..+|+||..|+.|+||.+++++.. .. .....++||+||+ |
T Consensus 499 vP~~~~~~~~-~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~------G- 570 (750)
T 3ln6_A 499 TPFGDEFTDR-KEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE------G- 570 (750)
T ss_dssp CCCCCCEETT-TTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC------S-
T ss_pred CCCEEEECCH-HHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC------C-
Confidence 6777666432 222233323456789999999999999999984321 11 1356899999997 5
Q ss_pred eeEEEEEEE
Q psy3858 164 KFDLRVYVL 172 (180)
Q Consensus 164 KfD~R~yvl 172 (180)
.|+|+.|+
T Consensus 571 -~E~~v~Vv 578 (750)
T 3ln6_A 571 -TEYRFFVL 578 (750)
T ss_dssp -EEEEEEEE
T ss_pred -CEEEEEEE
Confidence 48998876
No 15
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=96.78 E-value=0.0019 Score=53.30 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=37.2
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+. +.++..+..+ .-+-.+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 124 ~p~~~~~~-~~~~~~~~~~-~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~ 194 (403)
T 4dim_A 124 TARHFVVR-NENELKNALE-NLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGY 194 (403)
T ss_dssp CCCEECCC-SHHHHHHHHH-TSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSE
T ss_pred CCCEEEeC-CHHHHHHHHh-cCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCc
Confidence 56666653 2234433332 34568999999999999999999844321 124679999999854
No 16
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=96.58 E-value=0.002 Score=51.94 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=69.4
Q ss_pred hhhhcc-cccccCCCCccccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHH-----HHHH---HHH---hCCCceEE
Q psy3858 53 VISYNR-EHMNHFPGMANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWK-----EVIS---YNR---EHADETLI 120 (180)
Q Consensus 53 ~~~~~~-q~vNhfpg~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~-----~f~~---~~~---~~~~~~wI 120 (180)
+.++.. -.||...-...+..|-..++.|.+. ..| .|+|..+..|.. .|.+ +++ +.-+.++|
T Consensus 77 y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~~--gIP-----tP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfV 149 (330)
T 3t7a_A 77 YAKLRNPFVINDLNMQYLIQDRREVYSILQAE--GIL-----LPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFV 149 (330)
T ss_dssp HHHHHCCEESBCSTHHHHHTBHHHHHHHHHHT--TCC-----CCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEE
T ss_pred HHHHhCCceeCCHHHHHHHHHHHHHHHHHHHc--CCC-----CCCEEEEeCCCCCccccceeccchhhhhccccccCCee
Confidence 344555 8999998888888888888877762 223 667766644311 1110 001 11236899
Q ss_pred EcCCCCC-----------CCCCE-EEeCCCCc---------ccccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 121 LKPTRGA-----------EGKGI-KILNFIPE---------HEVMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 121 ~KP~~~~-----------~G~GI-~l~~~~~~---------~~~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
.||..|+ +|-|- ++++.+.. .-.....+++|+||.. +| -|+|+||+
T Consensus 150 eKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 150 EKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp EEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred EcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 9999996 88887 66655321 1134568999999985 35 89999997
No 17
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=96.41 E-value=0.0076 Score=53.04 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=55.5
Q ss_pred cccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCC-CCc-----cc
Q psy3858 69 NLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNF-IPE-----HE 142 (180)
Q Consensus 69 ~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~-~~~-----~~ 142 (180)
.+.+|..|+-.... +|.. .++++|+.-+.. . .. . .-||.||..|..|.||.+.+. -.. ..
T Consensus 494 llsNKailalLw~l----~p~h-p~LLpT~f~~~~-~--l~---~---~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~ 559 (619)
T 2io8_A 494 IPGNKAILPILWSL----FPHH-RYLLDTDFTVND-E--LV---K---TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGK 559 (619)
T ss_dssp TTTSTTHHHHHHHH----STTC-TTCCCEESSCCH-H--HH---H---HCEEEEETTCCTTTTCEEECTTSCEEEECCCT
T ss_pred HhhhHHHHHHHHHh----CCCC-CCCCCeeecCCc-c--cc---c---CCEEEccCCCCCCCCEEEEeCCChhHhhcccc
Confidence 36788877765543 3332 245566643332 1 11 1 249999999999999999986 111 11
Q ss_pred ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 143 VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 143 ~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
...+.+|.|+|++-|- .+|.-.=+++|++
T Consensus 560 y~~~~~IyQe~~~lp~-~d~~~~~iG~f~v 588 (619)
T 2io8_A 560 FAEQKNIYQQLWCLPK-VDGKYIQVCTFTV 588 (619)
T ss_dssp TTTSCEEEEECCCCCE-ETTEEEEEEEEEE
T ss_pred ccCCCeEEEEecCCCC-cCCcceEEEEEEE
Confidence 2357799999998773 3333333777764
No 18
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=96.31 E-value=0.0021 Score=57.89 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=46.4
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEe----CCCCccc-------ccCCceEEeeecCCccccCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKIL----NFIPEHE-------VMDQDASCQVYLSNVLLING 162 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~----~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g 162 (180)
+|++..+.. .++..+.+.+..+...|+||..|+.|+||.++ ++..+.. .....++||+||+ |
T Consensus 504 vP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~------G 576 (757)
T 3ln7_A 504 VPQSVEFTS-LEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV------G 576 (757)
T ss_dssp CCCEEEESC-HHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC------S
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC------C
Confidence 566655532 23343333234566899999999999999999 3422211 1356799999995 5
Q ss_pred ceeEEEEEEE
Q psy3858 163 FKFDLRVYVL 172 (180)
Q Consensus 163 ~KfD~R~yvl 172 (180)
.|+|+.|+
T Consensus 577 --~Ei~v~Vl 584 (757)
T 3ln7_A 577 --TEYRFFVL 584 (757)
T ss_dssp --EEEEEEEE
T ss_pred --cEEEEEEE
Confidence 48998775
No 19
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=96.20 E-value=0.0039 Score=49.82 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=36.6
Q ss_pred ccccCCCc--chHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 94 FPKSWSLP--RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp--~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
.|+++.+. .+..++.+.....-+-.+|+||..++.|.|+.++++..+.. .....++||+||+
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~ 192 (317)
T 4eg0_A 122 TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIE 192 (317)
T ss_dssp CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 56666553 34444432211223457999999999999999999854421 2346799999998
No 20
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=95.99 E-value=0.0066 Score=49.56 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=38.1
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEEe
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVLM 173 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlv 173 (180)
-+-.+|+||..++.|.||.++++..+.. .....++||+||+ |+ ++++.|+.
T Consensus 170 ~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~ 227 (364)
T 2i87_A 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLG 227 (364)
T ss_dssp CCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEc
Confidence 3458999999999999999999843321 1356899999998 53 66666654
No 21
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=95.98 E-value=0.005 Score=49.23 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~ 155 (180)
.+..+|+||..|+.|+|+.++++ ....+++|+||+
T Consensus 132 ~~~P~vvKP~~g~gs~Gv~~v~~------~~~~~lvEe~I~ 166 (305)
T 3df7_A 132 LDCKFIIKPRTACAGEGIGFSDE------VPDGHIAQEFIE 166 (305)
T ss_dssp CSSSEEEEESSCC----CBCCSS------CCTTEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCCEEEEec------CCCCEEEEeccC
Confidence 34679999999999999999988 234899999998
No 22
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=95.91 E-value=0.016 Score=47.31 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=35.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCC-CCCCEEEeCCCCcccc-cCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV-MDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~~~~-~~~~~vvQ~YI~ 155 (180)
.|++..+.+. +++. +.-+..+|+||..++ .|+|+.++++..+... ....++||+||+
T Consensus 115 ~p~~~~~~~~-~~~~----~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~ 173 (380)
T 3ax6_A 115 VPEYKLVKDL-ESDV----REFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKGETYLEEFVE 173 (380)
T ss_dssp CCCEEECSSH-HHHH----HTTCSSEEEEESCCC-----EEEECSGGGGGGCCCSSEEEEECCC
T ss_pred CCCeEEeCCH-HHHH----HhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhcCCEEEEeccC
Confidence 5666655332 2222 234568999999999 9999999998554331 116899999998
No 23
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=95.84 E-value=0.01 Score=49.75 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=41.7
Q ss_pred ccccC--CCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 94 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~--~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
.|+++ .+ .+.++..+..++ -+..+|+||..|+.|+|+.++++..+.. .....++||+||+.|
T Consensus 134 ~p~~~~~~~-~~~~e~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 210 (446)
T 3ouz_A 134 VIPGSDGAL-AGAEAAKKLAKE-IGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP 210 (446)
T ss_dssp BCSBCSSSC-CSHHHHHHHHHH-HCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred cCCCcccCC-CCHHHHHHHHHH-hCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 56665 33 333333333222 3457999999999999999999855422 115689999999975
No 24
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=95.71 E-value=0.012 Score=48.67 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=39.3
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+. +.++..+..+. -+..+|+||..++.|+|+.++++..+.. .....++||+||+.+
T Consensus 116 ~p~~~~~~-~~~~~~~~~~~-~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~ 186 (417)
T 2ip4_A 116 TARYRVFR-EPLEALAYLEE-VGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEGE 186 (417)
T ss_dssp BCCEEEES-SHHHHHHHHHH-HCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCSC
T ss_pred CCCeeeeC-CHHHHHHHHHH-cCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccCc
Confidence 45555442 22333332222 2458999999999999999998843311 012679999999843
No 25
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=95.66 E-value=0.013 Score=47.38 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=37.5
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEEe
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVLM 173 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlv 173 (180)
+..+|+||..+..|.||.++++..+.. .....++||+||+ |+ ++++.|+.
T Consensus 165 ~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~ 221 (343)
T 1e4e_A 165 TYPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLG 221 (343)
T ss_dssp CSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEe
Confidence 458999999999999999999854421 1356899999997 54 55555554
No 26
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=95.54 E-value=0.02 Score=46.48 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~ 155 (180)
+-++|+||..|+.|+|+.++++..+.......+++|+||+
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------CCCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhhhccchhhhhhcc
Confidence 4589999999999999999999766555667899999997
No 27
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=95.51 E-value=0.006 Score=48.25 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=27.7
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+..+|+||..++.|.|+.++++..+.. .....++||+||+
T Consensus 133 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~ 179 (307)
T 3r5x_A 133 GFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK 179 (307)
T ss_dssp CSSEEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 357999999999999999998843321 1246899999998
No 28
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=95.51 E-value=0.0065 Score=49.21 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccccc----CCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHEVM----DQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~~~----~~~~vvQ~YI~ 155 (180)
-+-+.|+||..++.|+|++++++ ++.+.. ..++|||+||+
T Consensus 124 i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 124 PDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SSCCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred cCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 35689999999999999999998 765421 15789999998
No 29
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=95.51 E-value=0.014 Score=47.50 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred ccccCCCcc-hHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCcc-------cccCCceEEeeecC
Q psy3858 94 FPKSWSLPR-QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEH-------EVMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~-e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~-------~~~~~~~vvQ~YI~ 155 (180)
.|++..+.. +...-.+.+...-+.++|+||..+..|+|+.++++..+. ...+..+++|+||+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~ 223 (357)
T 4fu0_A 154 VPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN 223 (357)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC
Confidence 566655532 222222222234567899999999999999999984332 12456799999996
No 30
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.50 E-value=0.011 Score=49.10 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=38.9
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----c--------cCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----V--------MDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----~--------~~~~~vvQ~YI~~ 156 (180)
.|+++.+. +.++..+..++ .+..+|+||..++.|+|+.++++..+.. . ....++||+||+.
T Consensus 117 ~p~~~~~~-~~~~~~~~~~~-~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g 190 (424)
T 2yw2_A 117 TARYEVFT-DFEKAKEYVEK-VGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG 190 (424)
T ss_dssp BCCEEEES-CHHHHHHHHHH-HCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS
T ss_pred CCCeEEEC-CHHHHHHHHHH-cCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC
Confidence 46655442 22333332222 2458999999999999999999843211 0 1257999999974
No 31
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=95.48 E-value=0.016 Score=48.72 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=33.3
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+..+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 157 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 157 GYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp CSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred CCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 457999999999999999999854421 124679999999865
No 32
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=95.46 E-value=0.007 Score=48.24 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=27.3
Q ss_pred ceEEEcCCCCCCCCCEEEeCCCCccc-----c-------cCCceEEeeecCC
Q psy3858 117 ETLILKPTRGAEGKGIKILNFIPEHE-----V-------MDQDASCQVYLSN 156 (180)
Q Consensus 117 ~~wI~KP~~~~~G~GI~l~~~~~~~~-----~-------~~~~~vvQ~YI~~ 156 (180)
..+|+||..|+.|+|+.++++..+.. . ....++||+||+-
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 58999999999999999999843211 0 1268999999983
No 33
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=95.31 E-value=0.037 Score=45.37 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCceEEEcCCCCC-CCCCEEEeCCCCccc-----ccCCceEEeeecCC
Q psy3858 115 ADETLILKPTRGA-EGKGIKILNFIPEHE-----VMDQDASCQVYLSN 156 (180)
Q Consensus 115 ~~~~wI~KP~~~~-~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~~ 156 (180)
-+-.+|+||..+. .|+|+.++++..+.. .....++||+||+-
T Consensus 144 ~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~g 191 (377)
T 3orq_A 144 LGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNI 191 (377)
T ss_dssp TCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCCE
T ss_pred cCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCCC
Confidence 3467999999986 899999999865532 12368999999983
No 34
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.22 E-value=0.026 Score=47.24 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.8
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+..+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 151 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 151 GYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp CSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 457999999999999999999843321 124689999999864
No 35
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=95.16 E-value=0.015 Score=47.20 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=14.3
Q ss_pred CceEEEcCCCCC-CCCCEEEeCCCCccc------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGA-EGKGIKILNFIPEHE------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~-~G~GI~l~~~~~~~~------~~~~~~vvQ~YI~ 155 (180)
+..+|+||..++ .|+|+.++++..+.. .....++||+||+
T Consensus 126 ~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~ 172 (365)
T 2z04_A 126 KLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVK 172 (365)
T ss_dssp --CEEEECC------------------------------CEEEECCC
T ss_pred CCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCC
Confidence 458999999999 999999998854322 0245799999998
No 36
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=95.13 E-value=0.068 Score=44.62 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=32.8
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+..+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 151 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 2vpq_A 151 GYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF 205 (451)
T ss_dssp CSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE
T ss_pred CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC
Confidence 457999999999999999999843311 024689999999864
No 37
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=95.11 E-value=0.027 Score=47.36 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=40.4
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------c--cCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------V--MDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~--~~~~~vvQ~YI~~ 156 (180)
.|+++.+. +.++..++.++ -+..+|+||..++.|+|+.++++..+.. . ....++||+||+-
T Consensus 138 ~p~~~~~~-~~~ea~~~~~~-~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G 211 (442)
T 3lp8_A 138 TAKYGYFV-DTNSAYKFIDK-HKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG 211 (442)
T ss_dssp BCCEEEES-SHHHHHHHHHH-SCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS
T ss_pred CCCEEEEC-CHHHHHHHHHH-cCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC
Confidence 56665443 33344333332 3568999999999999999999843321 0 1257999999983
No 38
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=95.08 E-value=0.017 Score=46.40 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=31.7
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+-.+|+||..++.|.|+.++++..+.. .....++||+||+
T Consensus 150 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~ 196 (322)
T 2fb9_A 150 DPPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS 196 (322)
T ss_dssp CSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 458999999999999999999843321 1346899999998
No 39
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.04 E-value=0.024 Score=46.34 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=29.0
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-----c------cCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-----V------MDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-----~------~~~~~vvQ~YI~ 155 (180)
+..+|+||..|+.|+|+.++++..+.. . ....++||+||+
T Consensus 148 g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 198 (391)
T 1kjq_A 148 GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVK 198 (391)
T ss_dssp CSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 457999999999999999999854421 0 146899999998
No 40
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=94.96 E-value=0.017 Score=48.44 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=27.6
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-----------c--cCCceEEeeecCC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-----------V--MDQDASCQVYLSN 156 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~--~~~~~vvQ~YI~~ 156 (180)
+..+|+||..++.|+|+.++++..+.. . ....++||+||+.
T Consensus 158 ~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G 211 (451)
T 2yrx_A 158 GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG 211 (451)
T ss_dssp CSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS
T ss_pred CCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC
Confidence 358999999999999999999843311 0 1367999999983
No 41
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=94.89 E-value=0.024 Score=47.53 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=35.6
Q ss_pred ccccCCCcchHHHHHHHHHhCCCce-EEEcCCCCCCCCCEEEeCCCCccc-----c--------cCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADET-LILKPTRGAEGKGIKILNFIPEHE-----V--------MDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~-wI~KP~~~~~G~GI~l~~~~~~~~-----~--------~~~~~vvQ~YI~~ 156 (180)
.|+++.+. +.++..+...+ -+.. +|+||..++.|+|+.++++..+.. . ....++||+||+-
T Consensus 143 ~p~~~~~~-~~~~~~~~~~~-~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G 217 (452)
T 2qk4_A 143 TAQWKAFT-KPEEACSFILS-ADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG 217 (452)
T ss_dssp BCCEEEES-SHHHHHHHHHH-CSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS
T ss_pred CCCeEEEC-CHHHHHHHHHh-CCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC
Confidence 45555442 22333333222 3457 999999999999999999843211 0 1357999999984
No 42
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=94.88 E-value=0.016 Score=48.07 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=38.8
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-----------c--cCCceEEeeecCC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-----------V--MDQDASCQVYLSN 156 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-----------~--~~~~~vvQ~YI~~ 156 (180)
.|+++.+. +.++..+.... -+..+|+||..++.|+|+.++++..+.. . ....++||+||+-
T Consensus 117 ~p~~~~~~-~~~~~~~~~~~-~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g 190 (422)
T 2xcl_A 117 TAEYETFT-SFDEAKAYVQE-KGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG 190 (422)
T ss_dssp BCCEEEES-CHHHHHHHHHH-HCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS
T ss_pred CCCeEEEC-CHHHHHHHHHh-cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC
Confidence 46655442 22333332222 2358999999999999999998843211 0 1367999999983
No 43
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=94.84 E-value=0.015 Score=48.09 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=26.7
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-++|+||..+..|.||.++++..+.. ..+..++||+||+
T Consensus 200 lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~ 247 (383)
T 3k3p_A 200 LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD 247 (383)
T ss_dssp CCSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 4568999999999999999999843321 2346799999997
No 44
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=94.84 E-value=0.029 Score=47.63 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=42.0
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------------ccCCceEEeeec
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------------VMDQDASCQVYL 154 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------------~~~~~~vvQ~YI 154 (180)
.|+++.+.+ .++..+..+ .-+-..|+||..|+.|+|+.++++..+.. .....++||+||
T Consensus 154 vp~~~~v~s-~ee~~~~~~-~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I 231 (474)
T 3vmm_A 154 SIKNKRVTT-LEDFRAALE-EIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFL 231 (474)
T ss_dssp CCCEEEECS-HHHHHHHHH-HSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECC
T ss_pred CCCeEEECC-HHHHHHHHH-HcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCC
Confidence 556655432 233433332 24567999999999999999999855421 014689999999
Q ss_pred CCc
Q psy3858 155 SNV 157 (180)
Q Consensus 155 ~~P 157 (180)
+.+
T Consensus 232 ~G~ 234 (474)
T 3vmm_A 232 QGE 234 (474)
T ss_dssp CBC
T ss_pred CCc
Confidence 966
No 45
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=94.82 E-value=0.04 Score=45.21 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=33.1
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-.+|+||..+..|.|+.++++..+.. .....++||+||+
T Consensus 184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~ 231 (367)
T 2pvp_A 184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ 231 (367)
T ss_dssp SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT
T ss_pred cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 4568999999999999999999855422 1356899999997
No 46
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.78 E-value=0.031 Score=45.41 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCC-CCCCEEEeCCCCccc-----ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHE-----VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~ 155 (180)
.|++..+. +.++..+.. +.-+..+|+||..++ .|+|+.++++..+.. .....++||+||+
T Consensus 111 ~p~~~~~~-~~~~~~~~~-~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~ 176 (369)
T 3aw8_A 111 TPPFHPVD-GPEDLEEGL-KRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVP 176 (369)
T ss_dssp CCCEEEES-SHHHHHHHH-TTTCSSEEEEECCC------EEEECSHHHHHHHHTTTCSSSEEEEECCC
T ss_pred CCCceeeC-CHHHHHHHH-HHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCC
Confidence 45555442 223333332 234568999999999 999999999843321 1246899999998
No 47
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=94.77 E-value=0.018 Score=48.18 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.7
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
+..+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 153 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 207 (449)
T 2w70_A 153 GYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP 207 (449)
T ss_dssp CSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC
Confidence 457999999999999999999843311 014689999999864
No 48
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=94.59 E-value=0.028 Score=46.55 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=40.4
Q ss_pred ccccCCCc-chHHHHHHHHHhCCCceEEEcCCCCC-CCCCEEEeCCCCccc-----ccCCceEEeeecC
Q psy3858 94 FPKSWSLP-RQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHE-----VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp-~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~ 155 (180)
.|+++.+. .+.+++.+...+ -+-++|+||..++ .|+|+.++++..+.. .....++||+||+
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~-~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 205 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQ-LGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY 205 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHH-HCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHH-hCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC
Confidence 55555553 133444333222 3457999998886 999999999865532 2356899999997
No 49
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=94.53 E-value=0.031 Score=45.22 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=37.9
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecCCccccCCceeEEEEEEEee
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLSNVLLINGFKFDLRVYVLMT 174 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvlvt 174 (180)
+-.+|+||..+..|.||.++++..+.. .....++||+||+ |+ ++++.|+..
T Consensus 165 g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~ 222 (346)
T 3se7_A 165 TYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGN 222 (346)
T ss_dssp CSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEE
T ss_pred CCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEec
Confidence 457999999999999999998843321 2356799999997 54 566666543
No 50
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=94.49 E-value=0.036 Score=45.45 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=31.8
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+-.+|+||..+..|.||.++++..+.. .....++||+||+
T Consensus 174 g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~ 220 (377)
T 1ehi_A 174 GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN 220 (377)
T ss_dssp CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC
T ss_pred CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC
Confidence 457999999999999999999843321 2346899999997
No 51
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=94.46 E-value=0.07 Score=47.20 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=40.7
Q ss_pred cccchHhHHHHHHHHHhhCCCCCCcccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCc------cc
Q psy3858 69 NLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE------HE 142 (180)
Q Consensus 69 ~l~~K~~l~~~l~~~~~~~~~~~~~~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~------~~ 142 (180)
.+.+|..|+-. -..++.. .++++||.-+.. ... + .-||.||..|-.|.||.+.+.-.+ ..
T Consensus 509 LlsNKaiLalL----W~l~p~h-p~LLpt~f~~~~---~~~---~---~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~ 574 (652)
T 2vob_A 509 IPSNKAILPMI----YHNHPEH-PAILKAEYELTD---ELR---K---HGYAKKPIVGRVGSNVIITSGDGVVHAESGGK 574 (652)
T ss_dssp TTTSTTHHHHH----HHHCTTC-TTBCCEESSCCH---HHH---H---HCEEEEECC-----------------------
T ss_pred hhcCHHHHHHH----HhcccCC-CCCCchhhcCCC---ccc---c---CCeEeccCCCCCCCCEEEEcCCchhhhhcccc
Confidence 45777766644 2334444 346666633332 111 1 249999999999999999865111 11
Q ss_pred ccCCceEEeeecCCccccCCceeEEEEEEE
Q psy3858 143 VMDQDASCQVYLSNVLLINGFKFDLRVYVL 172 (180)
Q Consensus 143 ~~~~~~vvQ~YI~~P~Li~g~KfD~R~yvl 172 (180)
...+.+|+|+|++-| -.+|.-.=+.+|++
T Consensus 575 y~~~~~IyQe~~~lp-~f~~~~~~iG~~lv 603 (652)
T 2vob_A 575 YGKRNMIYQQLFELK-KQDDYYAIIGGWMI 603 (652)
T ss_dssp ----CEEEEECCC---CBTTBCCEEEEEEE
T ss_pred cCCCCeEEEecccCC-ccCCcceEEEEEEE
Confidence 245789999999866 45665666666654
No 52
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=94.40 E-value=0.044 Score=45.86 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=39.2
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~ 155 (180)
.|+++.+. +.++..++.+. -+..+|+||..++.|+|+.++++..+.. .....++||+||+
T Consensus 122 tp~~~~~~-~~~ea~~~~~~-~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~ 194 (431)
T 3mjf_A 122 SAEYQNFT-DVEAALAYVRQ-KGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD 194 (431)
T ss_dssp BCCEEEES-CHHHHHHHHHH-HCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC
T ss_pred CCCeEeeC-CHHHHHHHHHH-cCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC
Confidence 45555442 22333333322 2457999999999999999999843321 0135899999998
No 53
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=94.34 E-value=0.013 Score=48.94 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=31.8
Q ss_pred ceEEEcCC-CCCCCCCEEEeCCCCccc-----ccCCceEEeeecCC
Q psy3858 117 ETLILKPT-RGAEGKGIKILNFIPEHE-----VMDQDASCQVYLSN 156 (180)
Q Consensus 117 ~~wI~KP~-~~~~G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~~ 156 (180)
..+|+||. .|+.|+|+.++++..+.. .....++||+||+.
T Consensus 172 ~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~ 217 (419)
T 4e4t_A 172 LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL 217 (419)
T ss_dssp CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE
T ss_pred CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC
Confidence 67999999 899999999999844321 23468999999973
No 54
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=94.32 E-value=0.025 Score=46.50 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=30.6
Q ss_pred CCce-EEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 115 ADET-LILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 115 ~~~~-wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
-+-+ +|+||..+..|.||.++++..+.. ..+..++||+||+
T Consensus 178 lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 226 (372)
T 3tqt_A 178 WGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR 226 (372)
T ss_dssp C---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC
T ss_pred cCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3456 999999999999999999843321 2356899999997
No 55
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=94.17 E-value=0.027 Score=46.67 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc------------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE------------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~------------------~~~~~~vvQ~YI~~P 157 (180)
-+-++|+||..|+.|+|+.++++..+.+ .....+++|+||+-+
T Consensus 144 ~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~ 204 (425)
T 3vot_A 144 LSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGP 204 (425)
T ss_dssp CCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSC
T ss_pred cCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCc
Confidence 3457999999999999999999843321 134679999999843
No 56
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=94.15 E-value=0.044 Score=47.92 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
-+-.+|+||..|..|+||.++++..+.. .....++||+||+.|
T Consensus 243 iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~ 294 (587)
T 3jrx_A 243 IGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA 294 (587)
T ss_dssp HCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred cCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 3468999999999999999999965532 125689999999964
No 57
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=94.12 E-value=0.051 Score=44.63 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=32.5
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+-.+|+||..+..|.||.++++..+.. ..+..++||+||+
T Consensus 188 g~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 234 (373)
T 3lwb_A 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS 234 (373)
T ss_dssp CSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 457999999999999999999855432 2356899999997
No 58
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=94.07 E-value=0.023 Score=47.30 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=25.1
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-----c------cCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-----V------MDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-----~------~~~~~vvQ~YI~ 155 (180)
+..+|+||..|+.|+|+.++++..+.. . ....++||+||+
T Consensus 156 g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 156 GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206 (433)
T ss_dssp CSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCC
T ss_pred CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCC
Confidence 458999999999999999999854321 0 145799999998
No 59
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=93.97 E-value=0.048 Score=44.99 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=32.2
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+-++|+||..+..|.||.++++..+.. .....++||+||+
T Consensus 198 g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 198 GLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 457999999999999999999854422 2356799999997
No 60
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=93.94 E-value=0.053 Score=44.87 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=38.8
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc------------c-cCCceEEeeecC
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE------------V-MDQDASCQVYLS 155 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~------------~-~~~~~vvQ~YI~ 155 (180)
.|++..+ .+.++..+..+ .-+..+|+||..++.|+|+.++++..+.. . ....++||+||+
T Consensus 121 ~p~~~~~-~~~~e~~~~~~-~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 121 TARFEVA-ETPEELREKIK-KFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp CCCEEEE-SSHHHHHHHHT-TSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred CCCEEEE-CCHHHHHHHHH-hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 3554433 23334443332 34568999999999999999999843211 0 013799999998
No 61
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=93.76 E-value=0.062 Score=46.38 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
+-.+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 234 g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~ 284 (554)
T 1w96_A 234 GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRA 284 (554)
T ss_dssp CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 458999999999999999999843321 124689999999854
No 62
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=93.73 E-value=0.047 Score=47.20 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
+-++|+||..|..|+|+.++++..+.. .....++||+||+.|
T Consensus 228 gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~ 278 (540)
T 3glk_A 228 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA 278 (540)
T ss_dssp CSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 468999999999999999999965532 125689999999864
No 63
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=93.55 E-value=0.031 Score=45.86 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=31.6
Q ss_pred CceEEEcCCCCCC-CCCEEEeCCCCccc-----ccCCceEEeeecCC
Q psy3858 116 DETLILKPTRGAE-GKGIKILNFIPEHE-----VMDQDASCQVYLSN 156 (180)
Q Consensus 116 ~~~wI~KP~~~~~-G~GI~l~~~~~~~~-----~~~~~~vvQ~YI~~ 156 (180)
+-.+|+||..+.. |+|+.++++..+.. ....+++||+||+.
T Consensus 147 g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~g 193 (389)
T 3q2o_A 147 SYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVPF 193 (389)
T ss_dssp CSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEecccC
Confidence 4579999999864 89999999855432 12458999999983
No 64
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=93.33 E-value=0.05 Score=44.37 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=31.7
Q ss_pred CceEEEcCCCCCCCCCEEEeCCCCccc-------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGKGIKILNFIPEHE-------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~GI~l~~~~~~~~-------~~~~~~vvQ~YI~ 155 (180)
+-++|+||..+..|.||.++++..+.. .....++||+||+
T Consensus 179 g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 225 (364)
T 3i12_A 179 GLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK 225 (364)
T ss_dssp CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC
Confidence 357999999999999999999843321 2356799999997
No 65
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=92.98 E-value=0.019 Score=51.05 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-..|+||..|..|+|++++++..+.. .....++||+||+.|
T Consensus 177 igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 177 IGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp SCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred CCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 4567899999999999999999854421 114579999999986
No 66
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.16 E-value=0.035 Score=49.39 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=3.3
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-..|+||..|+.|+|++++++..+.. .....++||+||+.|
T Consensus 151 igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~ 206 (681)
T 3n6r_A 151 IGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206 (681)
T ss_dssp ----------------------------------------------------CCSC
T ss_pred cCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Confidence 3457899999999999999998844321 114579999999976
No 67
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=91.42 E-value=0.14 Score=47.82 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=30.1
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|++..+.+ .++..+..++ -+..+|+||..+..|+|+.++.+..+.. ....+++||+||+.+
T Consensus 689 ~P~~~~~~s-~eea~~~~~~-ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~ 759 (1073)
T 1a9x_A 689 QPANATVTA-IEMAVEKAKE-IGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA 759 (1073)
T ss_dssp CCCEEECCS-HHHHHHHHHH-HCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTC
T ss_pred CCCceEECC-HHHHHHHHHH-cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 566655532 2233222221 3457999999999999999999843211 123579999999865
No 68
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=90.04 E-value=0.17 Score=47.55 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=25.9
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+-.+|+||..|..|+|++++++..+.. .....++||+||+.|
T Consensus 154 iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 154 AGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp TCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 3568999999999999999999854422 114679999999986
No 69
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=89.36 E-value=0.29 Score=45.61 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=40.3
Q ss_pred ccccCCCcchHHHHHHHHHhCCCceEEEcCCCCCCCCCEEEeCCCCccc---------ccCCceEEeeecCCc
Q psy3858 94 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE---------VMDQDASCQVYLSNV 157 (180)
Q Consensus 94 ~P~t~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~~~---------~~~~~~vvQ~YI~~P 157 (180)
.|+++.+.+ .++..+..+ .-+-++|+||..+..|+|+.++++..+.. .....++||+||+.+
T Consensus 143 vp~~~~v~~-~~ea~~~~~-~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~ 213 (1073)
T 1a9x_A 143 TARSGIAHT-MEEALAVAA-DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW 213 (1073)
T ss_dssp CCSEEEESS-HHHHHHHHH-HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS
T ss_pred CCCEEEECC-HHHHHHHHH-HcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 566665532 223322222 13458999999999999999999843321 123579999999864
No 70
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=88.45 E-value=0.1 Score=42.76 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.7
Q ss_pred ceEEEcCCCCCCCCCEEEeCCCCccc-----c---c----C--CceEEeeecC
Q psy3858 117 ETLILKPTRGAEGKGIKILNFIPEHE-----V---M----D--QDASCQVYLS 155 (180)
Q Consensus 117 ~~wI~KP~~~~~G~GI~l~~~~~~~~-----~---~----~--~~~vvQ~YI~ 155 (180)
.+.|+||+.++.|+|+.++++..+.. . . . ..+|||+||+
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 58999999999999999999844321 0 0 1 4699999998
No 71
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=87.12 E-value=0.51 Score=38.42 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=31.0
Q ss_pred CceEEEcCCC-CCCCCCEEEeCC--CCcccc-cCCceEEeeecCC
Q psy3858 116 DETLILKPTR-GAEGKGIKILNF--IPEHEV-MDQDASCQVYLSN 156 (180)
Q Consensus 116 ~~~wI~KP~~-~~~G~GI~l~~~--~~~~~~-~~~~~vvQ~YI~~ 156 (180)
+-+.|+||.. |+.|+|+.++++ ..+.+. ..+.++|++||+.
T Consensus 114 G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~~~vivEe~I~~ 158 (355)
T 3eth_A 114 GELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINF 158 (355)
T ss_dssp CSEEEEEESSSCCTTTTEEEEETTCGGGSCGGGTTTEEEEECCCC
T ss_pred CCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHhhCCEEEEEccCC
Confidence 4689999998 489999999998 554331 0116999999984
No 72
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=87.00 E-value=0.14 Score=48.55 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=0.6
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCC
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSN 156 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~ 156 (180)
-+-..|+||..|+.|+|+.++++..+.. .....++||+||+.
T Consensus 179 iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 179 LEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp ------------------------------------------------------C
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 3457899999999999999998844321 12457999999986
No 73
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=83.79 E-value=0.24 Score=46.71 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=4.9
Q ss_pred CCceEEEcCCCCCCCCCEEEeCCCCccc-------------ccCCceEEeeecCCc
Q psy3858 115 ADETLILKPTRGAEGKGIKILNFIPEHE-------------VMDQDASCQVYLSNV 157 (180)
Q Consensus 115 ~~~~wI~KP~~~~~G~GI~l~~~~~~~~-------------~~~~~~vvQ~YI~~P 157 (180)
-+..+|+||..|+.|+|+.++++..+.. .....++||+||+.+
T Consensus 170 igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg 225 (1165)
T 2qf7_A 170 IGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA 225 (1165)
T ss_dssp --------------------------------------------------CCCSSE
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCC
Confidence 3457999999999999999998843321 123569999999854
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=53.31 E-value=3.8 Score=30.91 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=27.9
Q ss_pred CceEEEcCCCC-----CCCCCEEE-eCCCCccc--------c--------cCCceEEeeecC
Q psy3858 116 DETLILKPTRG-----AEGKGIKI-LNFIPEHE--------V--------MDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~-----~~G~GI~l-~~~~~~~~--------~--------~~~~~vvQ~YI~ 155 (180)
+.+.++||..+ +.|.|+.+ +++..+.. . ....++||+||+
T Consensus 56 g~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 56 GYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp CSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 45789999988 66778888 57632211 0 025799999997
No 75
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=31.94 E-value=39 Score=19.60 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.6
Q ss_pred CCCceEEEcCCCCCCCCCEEEeCCC
Q psy3858 114 HADETLILKPTRGAEGKGIKILNFI 138 (180)
Q Consensus 114 ~~~~~wI~KP~~~~~G~GI~l~~~~ 138 (180)
.+.+.|.++|- |-.|--|-++.+.
T Consensus 17 ~P~KvWvL~P~-GrkGVkIgLFk~P 40 (56)
T 3kxt_A 17 VPEKVWALAPK-GRKGVKIGLFKDP 40 (56)
T ss_dssp CCSEEEEECCT-TSCCEEEEEEECT
T ss_pred eeeEEEEEcCC-CCCceEEEEEECC
Confidence 36679999993 2333335566664
No 76
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=31.21 E-value=28 Score=28.58 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=26.6
Q ss_pred CceEEEcCCCCCCCC----CEEEeCCCCccc-------------ccCCceEEeeecC
Q psy3858 116 DETLILKPTRGAEGK----GIKILNFIPEHE-------------VMDQDASCQVYLS 155 (180)
Q Consensus 116 ~~~wI~KP~~~~~G~----GI~l~~~~~~~~-------------~~~~~~vvQ~YI~ 155 (180)
+..+++||.....|+ |+.+..+..+.. .....++||+|+.
T Consensus 39 G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 39 GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp TSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 367999998854444 999997732211 0124688999985
No 77
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=29.44 E-value=55 Score=26.77 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=15.1
Q ss_pred eEEEcCC--CCCCCCC---------EEEeCC
Q psy3858 118 TLILKPT--RGAEGKG---------IKILNF 137 (180)
Q Consensus 118 ~wI~KP~--~~~~G~G---------I~l~~~ 137 (180)
..++||. .|.||+| +.+.++
T Consensus 42 PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s 72 (395)
T 2fp4_B 42 EIVLKAQILAGGRGKGVFSSGLKGGVHLTKD 72 (395)
T ss_dssp SEEEEECCSSSCGGGCEETTSCBCSEEEESC
T ss_pred cEEEEEeeccCCCccCccccCCcCCEEEECC
Confidence 5799995 5666655 888877
No 78
>3fch_A Carboxysome shell protein CSOS1D; structural protein; 2.20A {Prochlorococcus marinus subsp} PDB: 3f56_A
Probab=28.57 E-value=21 Score=27.50 Aligned_cols=16 Identities=31% Similarity=0.521 Sum_probs=14.2
Q ss_pred ceeEEEEEEEeeeecC
Q psy3858 163 FKFDLRVYVLMTSKPN 178 (180)
Q Consensus 163 ~KfD~R~yvlvts~~P 178 (180)
--++||.||.|.++.|
T Consensus 77 ~~ieLRtYvfiD~LQP 92 (281)
T 3fch_A 77 EQIELRTYVFLDSLQP 92 (281)
T ss_dssp SSCEEEEEEEESSCCH
T ss_pred cCceeEEEEEecccCH
Confidence 4689999999999887
No 79
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=25.01 E-value=33 Score=21.56 Aligned_cols=7 Identities=71% Similarity=1.227 Sum_probs=6.4
Q ss_pred eeEEEEE
Q psy3858 164 KFDLRVY 170 (180)
Q Consensus 164 KfD~R~y 170 (180)
|||||-|
T Consensus 38 KyDIR~W 44 (80)
T 3pm7_A 38 KFDLREW 44 (80)
T ss_dssp EEEEEEE
T ss_pred Ccccccc
Confidence 9999987
No 80
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=23.22 E-value=37 Score=21.27 Aligned_cols=7 Identities=57% Similarity=1.265 Sum_probs=6.4
Q ss_pred eeEEEEE
Q psy3858 164 KFDLRVY 170 (180)
Q Consensus 164 KfD~R~y 170 (180)
|||||-|
T Consensus 45 KyDIR~W 51 (79)
T 4g06_A 45 KFDIRAW 51 (79)
T ss_dssp EEEEEEE
T ss_pred Ccccccc
Confidence 9999987
No 81
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=22.81 E-value=55 Score=22.48 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=28.0
Q ss_pred eEEEcCCCCCCCCCEEEeCCCCcccccCCceEEeeecCCccccCCc--eeEEEEEE
Q psy3858 118 TLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLSNVLLINGF--KFDLRVYV 171 (180)
Q Consensus 118 ~wI~KP~~~~~G~GI~l~~~~~~~~~~~~~~vvQ~YI~~P~Li~g~--KfD~R~yv 171 (180)
.|+ +| |.|...+|.-+-.+ .-.....+.-|-.|+++-|. +||+.+-|
T Consensus 16 v~l-~~-----G~G~i~VNg~~l~~-yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V 64 (127)
T 3r8n_I 16 VFI-KP-----GNGKIVINQRSLEQ-YFGRETARMVVRQPLELVDMVEKLDLYITV 64 (127)
T ss_dssp EEE-EE-----SCSCEEETTBCSTT-TTTTSTTTTTTTGGGSSSCCSSSEEEEEEE
T ss_pred EEE-Ee-----CcEEEEECCEeHHH-HcCCHHHHHHHHHHHHHhCccCccceEEEE
Confidence 566 54 67777777632111 11133445566779877554 89998876
No 82
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=20.89 E-value=27 Score=16.92 Aligned_cols=8 Identities=25% Similarity=1.082 Sum_probs=6.2
Q ss_pred CCCccccc
Q psy3858 90 EYNIFPKS 97 (180)
Q Consensus 90 ~~~~~P~t 97 (180)
.|+|+|+|
T Consensus 9 dydflpet 16 (28)
T 1g1s_C 9 DYDFLPET 16 (28)
T ss_pred cccccccC
Confidence 47888887
No 83
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=20.82 E-value=45 Score=21.06 Aligned_cols=7 Identities=57% Similarity=1.265 Sum_probs=6.4
Q ss_pred eeEEEEE
Q psy3858 164 KFDLRVY 170 (180)
Q Consensus 164 KfD~R~y 170 (180)
|||||-|
T Consensus 40 KyDIR~W 46 (82)
T 2l3a_A 40 KFDIRAW 46 (82)
T ss_dssp EEEEEEE
T ss_pred Ccccccc
Confidence 9999987
Done!