RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3858
         (180 letters)



>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 235

 Score = 25.2 bits (54), Expect = 4.6
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 119 LILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 155
           +I+KP     GKG  +     +     +         
Sbjct: 30  VIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE 66


>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica
          [TaxId: 6192]}
          Length = 80

 Score = 23.8 bits (51), Expect = 6.6
 Identities = 5/42 (11%), Positives = 12/42 (28%)

Query: 37 YNIFPKSWSLPRQWKEVISYNREHMNHFPGMANLESKAILAY 78
          Y    +   +  ++   +                +S AI+ Y
Sbjct: 32 YGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMRY 73


>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 415

 Score = 24.7 bits (53), Expect = 7.2
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 3/108 (2%)

Query: 16  LESKA---ILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHMNHFPGMANLES 72
           LE      +LA HL +      ++Y++ P +  L     + +++  + +      A   S
Sbjct: 50  LEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKAS 109

Query: 73  KAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLI 120
                  L  ++Y   +E +       +    ++V  +  E +    +
Sbjct: 110 APGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADV 157


>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio
           cholerae [TaxId: 666]}
          Length = 201

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 2/33 (6%), Positives = 15/33 (45%)

Query: 147 DASCQVYLSNVLLINGFKFDLRVYVLMTSKPNP 179
           +      ++++      + D+ +++++ S  + 
Sbjct: 29  EILAHCMMNSLFTAQSHREDVVIHLVLESTRDY 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,217
Number of extensions: 34183
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 9
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)