BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3860
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
          Forms
 pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
          Forms
          Length = 167

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 12 YHLNRMKYFFPDEYNIFPKSWSL 34
          YHL  +     DEY+IFP+++S+
Sbjct: 52 YHLQLVDTAGQDEYSIFPQTYSI 74


>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
          Gdp
          Length = 169

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 12 YHLNRMKYFFPDEYNIFPKSWSL 34
          YHL  +     DEY+IFP+++S+
Sbjct: 49 YHLQLVDTAGQDEYSIFPQTYSI 71


>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
          With Pde6d
          Length = 181

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 12 YHLNRMKYFFPDEYNIFPKSWSL 34
          YHL  +     DEY+IFP+++S+
Sbjct: 54 YHLQLVDTAGQDEYSIFPQTYSI 76


>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
 pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
          Gppnhp
 pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
          Length = 177

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 12 YHLNRMKYFFPDEYNIFPKSWSL 34
          YHL  +     DEY+IFP+++S+
Sbjct: 54 YHLQLVDTAGQDEYSIFPQTYSI 76


>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
           Escherichia Coli K-12
          Length = 657

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 77  VMDQDASCQVYLSNVLLINGFKFDLRVKRYAVEKYRQKGSVF 118
           V+D  ++C  Y      ++GF+FDL        ++RQ   +F
Sbjct: 313 VVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLF 354


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,784,174
Number of Sequences: 62578
Number of extensions: 151115
Number of successful extensions: 335
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)