Query psy3860
Match_columns 119
No_of_seqs 152 out of 1079
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 1.9E-33 4.1E-38 212.2 3.8 115 1-118 16-135 (292)
2 KOG2156|consensus 99.9 8.4E-28 1.8E-32 190.8 7.2 109 3-113 257-366 (662)
3 KOG2158|consensus 99.9 1.2E-23 2.5E-28 165.5 4.1 112 1-119 181-293 (565)
4 KOG2157|consensus 99.9 9E-22 1.9E-26 157.7 8.4 112 2-114 138-275 (497)
5 KOG2155|consensus 99.6 5.5E-16 1.2E-20 122.2 3.8 105 3-113 365-476 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.4 1.7E-12 3.8E-17 97.4 8.7 94 4-105 16-137 (262)
7 PF08443 RimK: RimK-like ATP-g 98.6 8.5E-08 1.8E-12 68.5 4.9 72 28-106 18-97 (190)
8 PRK05246 glutathione synthetas 98.6 3.2E-07 7E-12 70.3 8.2 73 26-106 133-214 (316)
9 PF02955 GSH-S_ATP: Prokaryoti 98.5 4.2E-07 9.2E-12 64.6 7.2 73 26-106 10-91 (173)
10 PLN02941 inositol-tetrakisphos 98.5 9.6E-07 2.1E-11 68.5 8.5 73 27-106 128-205 (328)
11 TIGR01380 glut_syn glutathione 98.4 2.4E-06 5.2E-11 65.6 10.0 73 26-106 132-213 (312)
12 PRK12458 glutathione synthetas 98.4 2.3E-06 4.9E-11 66.5 9.3 75 26-106 139-221 (338)
13 COG0189 RimK Glutathione synth 98.3 1.9E-06 4.1E-11 66.5 6.0 65 26-91 132-205 (318)
14 PF13535 ATP-grasp_4: ATP-gras 98.2 1E-05 2.2E-10 56.1 8.4 77 4-90 2-90 (184)
15 TIGR00768 rimK_fam alpha-L-glu 98.2 5.4E-06 1.2E-10 61.4 6.6 70 28-105 103-183 (277)
16 PRK10446 ribosomal protein S6 98.2 5.8E-06 1.3E-10 62.8 6.7 72 28-106 114-193 (300)
17 TIGR02144 LysX_arch Lysine bio 97.9 2.8E-05 6E-10 58.0 6.1 70 28-106 102-183 (280)
18 TIGR02291 rimK_rel_E_lig alpha 97.8 0.00016 3.4E-09 56.0 7.8 44 28-73 52-98 (317)
19 PRK12767 carbamoyl phosphate s 97.6 0.0003 6.6E-09 53.5 7.2 61 28-90 126-191 (326)
20 PRK06849 hypothetical protein; 97.5 0.00076 1.6E-08 52.9 9.0 78 5-91 115-197 (389)
21 TIGR03103 trio_acet_GNAT GNAT- 97.5 0.00033 7.1E-09 57.8 6.2 67 28-106 312-387 (547)
22 PRK14016 cyanophycin synthetas 97.4 0.00044 9.5E-09 58.8 6.1 68 28-106 229-305 (727)
23 PF14403 CP_ATPgrasp_2: Circul 97.3 0.00031 6.7E-09 56.6 4.4 65 25-90 307-385 (445)
24 PRK02471 bifunctional glutamat 97.3 0.0012 2.6E-08 56.4 7.9 70 28-106 503-582 (752)
25 PRK01372 ddl D-alanine--D-alan 97.3 0.00078 1.7E-08 50.9 5.9 59 28-89 113-179 (304)
26 COG0439 AccC Biotin carboxylas 97.2 0.00075 1.6E-08 54.5 5.4 53 37-91 140-206 (449)
27 PF02655 ATP-grasp_3: ATP-gras 97.2 0.00019 4.2E-09 50.0 1.6 39 50-89 31-71 (161)
28 PRK07206 hypothetical protein; 97.1 0.00086 1.9E-08 52.8 4.8 62 28-91 123-201 (416)
29 TIGR01205 D_ala_D_alaTIGR D-al 97.0 0.002 4.4E-08 48.8 6.2 70 28-106 120-201 (315)
30 PF14397 ATPgrasp_ST: Sugar-tr 97.0 0.0038 8.2E-08 47.5 7.7 71 37-107 60-148 (285)
31 TIGR01435 glu_cys_lig_rel glut 96.9 0.0053 1.1E-07 52.4 7.8 70 28-106 490-569 (737)
32 PF15632 ATPgrasp_Ter: ATP-gra 96.8 0.0065 1.4E-07 47.3 7.6 79 5-91 106-209 (329)
33 PRK08654 pyruvate carboxylase 96.8 0.0027 5.8E-08 51.9 5.8 53 37-91 140-206 (499)
34 TIGR02068 cya_phycin_syn cyano 96.8 0.0033 7.2E-08 54.5 6.4 68 28-106 228-304 (864)
35 TIGR01161 purK phosphoribosyla 96.8 0.0024 5.2E-08 49.4 4.8 60 28-90 113-179 (352)
36 PRK08462 biotin carboxylase; V 96.7 0.0038 8.2E-08 49.8 5.6 53 37-91 142-208 (445)
37 PRK08463 acetyl-CoA carboxylas 96.7 0.0046 1E-07 50.1 6.2 61 29-91 131-206 (478)
38 PRK01966 ddl D-alanyl-alanine 96.7 0.0025 5.4E-08 49.2 4.3 41 49-90 161-209 (333)
39 TIGR01142 purT phosphoribosylg 96.7 0.0033 7.1E-08 48.9 4.9 60 28-90 116-187 (380)
40 TIGR00514 accC acetyl-CoA carb 96.5 0.0058 1.3E-07 48.9 5.6 53 37-91 140-206 (449)
41 PRK14571 D-alanyl-alanine synt 96.5 0.004 8.6E-08 47.2 4.2 40 49-89 124-171 (299)
42 PRK02186 argininosuccinate lya 96.5 0.0092 2E-07 51.8 6.8 61 28-91 122-191 (887)
43 PRK12833 acetyl-CoA carboxylas 96.4 0.0069 1.5E-07 48.9 5.4 53 37-91 143-209 (467)
44 PRK12999 pyruvate carboxylase; 96.4 0.0061 1.3E-07 54.4 5.2 62 28-91 135-210 (1146)
45 TIGR01369 CPSaseII_lrg carbamo 96.3 0.014 3E-07 51.7 7.0 60 28-90 684-753 (1050)
46 PRK09288 purT phosphoribosylgl 96.3 0.0075 1.6E-07 47.1 4.9 59 28-89 129-199 (395)
47 TIGR01235 pyruv_carbox pyruvat 96.3 0.0087 1.9E-07 53.4 5.7 54 36-91 139-206 (1143)
48 PRK00885 phosphoribosylamine-- 96.3 0.01 2.2E-07 47.0 5.6 61 28-91 117-191 (420)
49 TIGR00877 purD phosphoribosyla 96.2 0.0099 2.1E-07 47.0 5.2 61 28-91 119-193 (423)
50 PRK08591 acetyl-CoA carboxylas 96.2 0.014 3.1E-07 46.5 6.1 53 37-91 140-206 (451)
51 PRK06019 phosphoribosylaminoim 96.2 0.0094 2E-07 46.7 5.0 60 28-90 115-181 (372)
52 PRK13790 phosphoribosylamine-- 96.2 0.022 4.7E-07 44.8 6.8 60 29-91 83-152 (379)
53 PRK05586 biotin carboxylase; V 96.1 0.008 1.7E-07 48.2 4.2 52 38-91 141-206 (447)
54 PRK07178 pyruvate carboxylase 96.0 0.014 3E-07 47.3 5.0 53 37-91 139-205 (472)
55 PRK14572 D-alanyl-alanine synt 95.9 0.014 2.9E-07 45.4 4.7 40 49-89 170-217 (347)
56 PRK05294 carB carbamoyl phosph 95.9 0.015 3.3E-07 51.5 5.4 61 28-91 684-754 (1066)
57 PRK13278 purP 5-formaminoimida 95.7 0.0072 1.6E-07 47.6 2.3 41 50-91 149-202 (358)
58 PRK06395 phosphoribosylamine-- 95.6 0.029 6.2E-07 45.1 5.6 42 50-91 141-193 (435)
59 PRK14569 D-alanyl-alanine synt 95.6 0.0078 1.7E-07 45.7 2.2 40 49-89 129-175 (296)
60 PRK14570 D-alanyl-alanine synt 95.6 0.047 1E-06 42.9 6.5 41 48-89 169-217 (364)
61 PF02786 CPSase_L_D2: Carbamoy 95.5 0.03 6.6E-07 40.9 4.9 66 26-93 15-94 (211)
62 PRK14568 vanB D-alanine--D-lac 95.5 0.011 2.3E-07 45.9 2.6 58 28-90 147-212 (343)
63 PRK06111 acetyl-CoA carboxylas 95.4 0.012 2.6E-07 46.9 2.7 53 37-91 140-206 (450)
64 PRK13277 5-formaminoimidazole- 95.4 0.021 4.5E-07 45.2 3.9 40 50-90 152-208 (366)
65 PF07478 Dala_Dala_lig_C: D-al 95.2 0.021 4.5E-07 41.4 3.0 40 49-89 32-79 (203)
66 PRK12815 carB carbamoyl phosph 95.1 0.038 8.1E-07 49.1 5.1 60 28-90 685-752 (1068)
67 TIGR02712 urea_carbox urea car 95.1 0.064 1.4E-06 48.3 6.4 63 26-91 128-204 (1201)
68 COG0027 PurT Formate-dependent 95.1 0.11 2.4E-06 40.6 6.9 70 36-116 136-217 (394)
69 PRK05784 phosphoribosylamine-- 94.9 0.072 1.6E-06 43.5 5.8 58 32-91 128-208 (486)
70 PRK13789 phosphoribosylamine-- 94.6 0.071 1.5E-06 42.7 5.0 52 38-91 132-197 (426)
71 PLN02257 phosphoribosylamine-- 94.3 0.12 2.5E-06 41.7 5.6 60 29-91 118-191 (434)
72 PF02750 Synapsin_C: Synapsin, 94.2 0.054 1.2E-06 39.4 3.2 87 3-103 8-103 (203)
73 PF01071 GARS_A: Phosphoribosy 93.9 0.083 1.8E-06 38.3 3.6 61 30-91 19-92 (194)
74 PRK05294 carB carbamoyl phosph 93.8 0.11 2.3E-06 46.2 4.9 61 28-91 143-213 (1066)
75 COG3919 Predicted ATP-grasp en 93.7 0.079 1.7E-06 41.2 3.4 73 4-89 112-200 (415)
76 PHA02117 glutathionylspermidin 93.6 0.26 5.7E-06 39.4 6.3 52 52-105 309-366 (397)
77 PRK06524 biotin carboxylase-li 93.4 0.15 3.3E-06 41.8 4.8 41 49-90 180-227 (493)
78 TIGR01369 CPSaseII_lrg carbamo 93.3 0.11 2.4E-06 46.1 4.1 61 28-91 142-212 (1050)
79 PF05770 Ins134_P3_kin: Inosit 93.2 0.21 4.6E-06 38.6 5.1 65 26-91 113-182 (307)
80 PRK10507 bifunctional glutathi 92.7 1 2.2E-05 38.2 8.6 54 51-105 528-587 (619)
81 PLN02735 carbamoyl-phosphate s 92.5 0.23 4.9E-06 44.5 4.9 62 28-91 159-230 (1102)
82 PF02222 ATP-grasp: ATP-grasp 92.3 1.4 2.9E-05 31.3 7.8 60 28-90 8-74 (172)
83 PLN02948 phosphoribosylaminoim 92.3 0.32 6.9E-06 40.6 5.3 60 28-90 136-204 (577)
84 PLN02735 carbamoyl-phosphate s 92.2 0.26 5.6E-06 44.2 4.9 61 28-91 717-787 (1102)
85 PRK12815 carB carbamoyl phosph 92.2 0.24 5.2E-06 44.1 4.7 61 28-91 143-213 (1068)
86 COG4770 Acetyl/propionyl-CoA c 92.1 0.14 3.1E-06 42.6 3.0 65 26-92 129-207 (645)
87 COG1821 Predicted ATP-utilizin 91.9 0.084 1.8E-06 40.1 1.3 35 50-90 138-172 (307)
88 COG1038 PycA Pyruvate carboxyl 91.7 0.19 4.1E-06 43.7 3.4 67 25-93 134-214 (1149)
89 KOG3895|consensus 90.9 0.46 9.9E-06 37.8 4.5 88 2-103 196-292 (488)
90 COG2232 Predicted ATP-dependen 89.9 0.27 5.9E-06 38.6 2.5 37 50-89 149-185 (389)
91 KOG0238|consensus 89.7 0.31 6.8E-06 40.4 2.8 65 26-92 125-203 (670)
92 PRK14573 bifunctional D-alanyl 86.4 1.4 3E-05 38.1 4.9 41 49-90 609-657 (809)
93 KOG0369|consensus 85.4 0.69 1.5E-05 39.8 2.5 43 50-93 184-240 (1176)
94 COG2308 Uncharacterized conser 83.3 3.1 6.8E-05 34.0 5.2 95 12-109 328-440 (488)
95 COG0754 Gsp Glutathionylspermi 81.8 1.1 2.3E-05 35.6 2.1 40 52-91 298-343 (387)
96 PF04174 CP_ATPgrasp_1: A circ 75.0 1.7 3.7E-05 34.0 1.4 35 51-85 288-330 (330)
97 COG1759 5-formaminoimidazole-4 72.8 2.4 5.2E-05 33.3 1.8 42 49-91 149-205 (361)
98 COG0458 CarB Carbamoylphosphat 70.5 3.8 8.1E-05 33.0 2.4 27 49-76 149-175 (400)
99 PF14305 ATPgrasp_TupA: TupA-l 69.9 20 0.00044 26.5 6.1 44 26-72 35-78 (239)
100 TIGR02049 gshA_ferroox glutama 68.9 7.1 0.00015 31.3 3.6 40 49-89 256-312 (403)
101 PF08886 GshA: Glutamate-cyste 64.7 5 0.00011 32.2 2.0 51 49-100 259-326 (404)
102 TIGR01016 sucCoAbeta succinyl- 55.6 23 0.00049 27.9 4.3 45 28-73 19-67 (386)
103 COG0151 PurD Phosphoribosylami 52.2 25 0.00055 28.6 4.1 52 37-89 126-190 (428)
104 COG1181 DdlA D-alanine-D-alani 47.7 91 0.002 24.2 6.5 45 44-89 136-188 (317)
105 PF08442 ATP-grasp_2: ATP-gras 46.3 34 0.00074 24.8 3.7 45 28-73 18-66 (202)
106 PF10584 Proteasome_A_N: Prote 36.8 11 0.00024 17.9 -0.1 11 108-118 5-15 (23)
107 KOG0368|consensus 35.5 22 0.00048 33.7 1.5 25 49-73 238-262 (2196)
108 PF12286 DUF3622: Protein of u 30.2 28 0.00061 21.2 0.9 10 95-104 3-12 (71)
109 KOG0782|consensus 29.0 24 0.00052 30.2 0.7 26 48-73 350-375 (1004)
110 PHA02634 hypothetical protein; 27.2 26 0.00056 19.7 0.4 22 49-70 12-33 (49)
111 COG1168 MalY Bifunctional PLP- 25.0 53 0.0012 26.4 1.9 31 87-118 131-175 (388)
112 COG5179 TAF1 Transcription ini 24.7 66 0.0014 27.9 2.5 22 39-60 640-661 (968)
113 PF07193 DUF1408: Protein of u 24.3 51 0.0011 19.8 1.3 13 107-119 35-48 (75)
114 PF13053 DUF3914: Protein of u 23.4 45 0.00097 21.0 1.0 9 96-104 41-49 (92)
115 PLN02235 ATP citrate (pro-S)-l 21.2 1.5E+02 0.0032 24.3 3.7 46 28-73 27-79 (423)
116 KOG1678|consensus 21.1 34 0.00074 24.4 0.1 21 40-60 137-157 (204)
117 PHA02756 hypothetical protein; 21.0 98 0.0021 21.2 2.3 22 50-71 48-69 (164)
118 PF11201 DUF2982: Protein of u 20.9 1.9E+02 0.0041 20.2 3.8 39 7-47 110-148 (152)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=99.98 E-value=1.9e-33 Score=212.25 Aligned_cols=115 Identities=34% Similarity=0.625 Sum_probs=55.9
Q ss_pred CccchhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc---
Q psy3860 1 MANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--- 77 (119)
Q Consensus 1 ~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--- 77 (119)
+++||+|+.|+++++++.+..+..++|+|+||.+|.+.++|.....++..+.||+||.+++||+||.++++.+ ++.
T Consensus 16 ~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~l~~~~~-~i~~~~ 94 (292)
T PF03133_consen 16 SQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIKLFNNLE-QILRFS 94 (292)
T ss_dssp EEEE-----------------------------HHHHHHHHHHHHHTTS---EEEEES-------EEEES-HH-HHHCCH
T ss_pred CchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCceecCCHH-HHHHHh
Confidence 4689999999999999999888789999999999999999998888777789999999999999999999887 554
Q ss_pred --CCCceEEeeccCCccccCCceeeEEEEEEEEeecCCCCccc
Q psy3860 78 --MDQDASCQVYLSNVLLINGFKFDLRVKRYAVEKYRQKGSVF 118 (119)
Q Consensus 78 --~~~~~vvQ~YI~~Plli~g~KfDlR~yvlv~~~~~~~~~~~ 118 (119)
....+|||+||+||+|++|||||+|+||||+| ++ ++.||
T Consensus 95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts-~~-pl~vy 135 (292)
T PF03133_consen 95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTS-LN-PLRVY 135 (292)
T ss_dssp CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T----T--EE
T ss_pred hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEee-cc-ceeee
Confidence 56899999999999999999999999999765 55 36665
No 2
>KOG2156|consensus
Probab=99.94 E-value=8.4e-28 Score=190.80 Aligned_cols=109 Identities=29% Similarity=0.445 Sum_probs=102.0
Q ss_pred cchhhHHHHHHHHHHHHhCCC-CCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCccCCCc
Q psy3860 3 NLESKAILAYHLNRMKYFFPD-EYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEVMDQD 81 (119)
Q Consensus 3 ~l~~K~~l~~~l~~~~~~~~~-~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~~~ 81 (119)
.|+|||.|++++.+.+..++. +++|+|+||+||+|.++|..+..++++..||+||.+.+||.||.+++++. +++...+
T Consensus 257 ~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~-q~pk~rp 335 (662)
T KOG2156|consen 257 RIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWS-QFPKDRP 335 (662)
T ss_pred ccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchh-hCCCccc
Confidence 589999999999999888874 99999999999999999999999888889999999999999999999999 8988899
Q ss_pred eEEeeccCCccccCCceeeEEEEEEEEeecCC
Q psy3860 82 ASCQVYLSNVLLINGFKFDLRVKRYAVEKYRQ 113 (119)
Q Consensus 82 ~vvQ~YI~~Plli~g~KfDlR~yvlv~~~~~~ 113 (119)
.+||+||++|+|++|.|||+|+||+|+ +++|
T Consensus 336 LvvQ~yieRP~ling~KFDlrlYv~vt-s~nP 366 (662)
T KOG2156|consen 336 LVVQKYIERPLLINGSKFDLRLYVVVT-SVNP 366 (662)
T ss_pred HHHHHHhhcceeecCcceeEEEEEEEe-ecCc
Confidence 999999999999999999999999864 5665
No 3
>KOG2158|consensus
Probab=99.88 E-value=1.2e-23 Score=165.47 Aligned_cols=112 Identities=35% Similarity=0.561 Sum_probs=98.8
Q ss_pred CccchhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCccCCC
Q psy3860 1 MANLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEVMDQ 80 (119)
Q Consensus 1 ~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~~ 80 (119)
|.+++ ||.|. +.+|.+.+|+++.|+|.||.+|.++..|.++.+..+ .++|+||+.|++|.||.++++.. ......
T Consensus 181 m~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~~K-rtfivkpDsgaqg~giylisDir-~~g~~Q 255 (565)
T KOG2158|consen 181 MREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEIMK-RTFIVKPDSGAQGSGIYLISDIR-EKGEYQ 255 (565)
T ss_pred HHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHHHHHHhc-ccEEECCCCCCCCcceeeechhh-hhhHHH
Confidence 67888 99998 999999999999999999999999988988765443 59999999999999999998777 555556
Q ss_pred ceEEeeccCCcccc-CCceeeEEEEEEEEeecCCCCcccC
Q psy3860 81 DASCQVYLSNVLLI-NGFKFDLRVKRYAVEKYRQKGSVFI 119 (119)
Q Consensus 81 ~~vvQ~YI~~Plli-~g~KfDlR~yvlv~~~~~~~~~~~~ 119 (119)
..++|+||..|||+ |+.|||+|+|+|+ .|.+ +.|||+
T Consensus 256 ~~~vQeyV~~pLli~dkyKfd~rvy~li-kSvd-PlsIfv 293 (565)
T KOG2158|consen 256 NKKVQEYVTYPLLISDKYKFDQRVYSLI-KSVD-PLSIFV 293 (565)
T ss_pred HHHHHHHhcccccccccceeeeeeeeee-eccC-cceEEE
Confidence 78999999999999 9999999999986 5677 788885
No 4
>KOG2157|consensus
Probab=99.86 E-value=9e-22 Score=157.69 Aligned_cols=112 Identities=22% Similarity=0.321 Sum_probs=97.3
Q ss_pred ccchhhHHHHHHHHHHHHhCCC------------CCCcccceeeeCcchHHHHHHHHh-cCCceEEEecCCCCCCCcEEE
Q psy3860 2 ANLESKAILAYHLNRMKYFFPD------------EYNIFPKSWSLPRQWKEVISYNRE-HADETLILKPTRGAEGKGIKI 68 (119)
Q Consensus 2 ~~l~~K~~l~~~l~~~~~~~~~------------~~~~~P~T~~lp~~~~~~~~~~~~-~~~~~wI~KP~~g~~G~GI~l 68 (119)
.+|+|||.+++++++++..++. ..+|.|.|+.+|.+...+.....+ .....||+||.+.++|+||.+
T Consensus 138 ~~L~rkd~l~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~ 217 (497)
T KOG2157|consen 138 KELTRKDLLMKLIKRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFL 217 (497)
T ss_pred HHhhhhHHhhhhHHHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEE
Confidence 4789999999999999999875 378999999999999888877665 678999999999999999999
Q ss_pred eccCCcCc-------------cCCCceEEeeccCCccccCCceeeEEEEEEEEeecCCC
Q psy3860 69 LNFIPEHE-------------VMDQDASCQVYLSNVLLINGFKFDLRVKRYAVEKYRQK 114 (119)
Q Consensus 69 ~~~~~~~i-------------~~~~~~vvQ~YI~~Plli~g~KfDlR~yvlv~~~~~~~ 114 (119)
++..+ ++ ...+.+++|+||++|++++|+|||+|.||+|++.+++.
T Consensus 218 ~~~l~-~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~ 275 (497)
T KOG2157|consen 218 FNTLS-DLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLL 275 (497)
T ss_pred ecchh-hhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchh
Confidence 98776 32 23578999999999999999999999999987655443
No 5
>KOG2155|consensus
Probab=99.60 E-value=5.5e-16 Score=122.17 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=87.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHH----hcCCceEEEecCCCCCCCcEEEeccCCcCcc-
Q psy3860 3 NLESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNR----EHADETLILKPTRGAEGKGIKILNFIPEHEV- 77 (119)
Q Consensus 3 ~l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~----~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~- 77 (119)
.|+.||.|+..+++- +...+|+|.||.|.++..+|++.++ .+..+.||+||++-+||-...+..+.+ +|.
T Consensus 365 cltvKd~LA~~a~r~----~g~~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~-~IIR 439 (631)
T KOG2155|consen 365 CLTVKDLLAACAMRD----PGKNDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLN-QIIR 439 (631)
T ss_pred HHHHHHHHHHHHhhc----CCCCcccccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHH-HHHH
Confidence 578999999877653 3355799999999999999998764 246889999999999999999999988 553
Q ss_pred --CCCceEEeeccCCccccCCceeeEEEEEEEEeecCC
Q psy3860 78 --MDQDASCQVYLSNVLLINGFKFDLRVKRYAVEKYRQ 113 (119)
Q Consensus 78 --~~~~~vvQ~YI~~Plli~g~KfDlR~yvlv~~~~~~ 113 (119)
...+-|+|+||++|+|..|-|||+|..||+- |.+|
T Consensus 440 m~EtgPKiv~kYIe~P~LFr~gKFDlRYiVllr-si~P 476 (631)
T KOG2155|consen 440 MIETGPKIVCKYIERPLLFRNGKFDLRYIVLLR-SIAP 476 (631)
T ss_pred HHhcCchHHHHhcCCcceeecCccceEEEEEEc-cccc
Confidence 4678999999999999988899999999864 4444
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.39 E-value=1.7e-12 Score=97.37 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=71.9
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------
Q psy3860 4 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------ 77 (119)
Q Consensus 4 l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------ 77 (119)
+-.|-..++.|.+ .+...+|+|+|..+.. .+.+.+.++ .....++||..|++|+||..++..+....
T Consensus 16 ~~~Kw~v~~~L~~----~~~l~~~LP~T~~~~~-~~~l~~~L~--~y~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 16 FFDKWEVYKALSR----DPELRPYLPETELLTS-FEDLREMLN--KYKSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCHHHHHHHHHc----CCcchhhCCCceEcCC-HHHHHHHHH--HCCEEEEEeCCCCCCccEEEEEEeCCEEEEEEccC
Confidence 3456666665544 3446789999999964 456777766 35688899999999999999987762110
Q ss_pred ----------------------CCCceEEeeccCCccccCCceeeEEEEE
Q psy3860 78 ----------------------MDQDASCQVYLSNVLLINGFKFDLRVKR 105 (119)
Q Consensus 78 ----------------------~~~~~vvQ~YI~~Plli~g~KfDlR~yv 105 (119)
....||||++|+ -..++|++||+|+.|
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~Rvlv 137 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLV 137 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEE
Confidence 356999999999 678899999999985
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.58 E-value=8.5e-08 Score=68.51 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=35.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCCccccCCcee
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSNVLLINGFKF 99 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~Kf 99 (119)
+|+|+...+ .++..+.+++..+.+.|+||..|++|.|+.++++.+ ++. ...+.++|+||+.+ +| -
T Consensus 18 vP~t~~~~~-~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~-~~~~~l~~~~~~~~~~~~Q~fI~~~---~g--~ 90 (190)
T PF08443_consen 18 VPETRVTNS-PEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPD-ELESLLDAFKRLENPILVQEFIPKD---GG--R 90 (190)
T ss_dssp ---EEEESS-HHHHHHHHHHH--SSEEEE-SB-------EEEESHC-HHHHHHH-----TTT-EEEE----S---S----
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHH-HHHHHHHHHHhccCcceEeccccCC---CC--c
Confidence 699999954 344444443322578999999999999999999887 332 34688999999954 12 5
Q ss_pred eEEEEEE
Q psy3860 100 DLRVKRY 106 (119)
Q Consensus 100 DlR~yvl 106 (119)
|+|++|+
T Consensus 91 d~Rv~Vi 97 (190)
T PF08443_consen 91 DLRVYVI 97 (190)
T ss_dssp -EEEEEE
T ss_pred EEEEEEE
Confidence 9999875
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=98.57 E-value=3.2e-07 Score=70.33 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=52.4
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCc-------c--CCCceEEeeccCCccccCC
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------V--MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i-------~--~~~~~vvQ~YI~~Plli~g 96 (119)
.++|+|....+ .+.+.+.+++. +..|+||..|++|+||.+++..+.++ . ...++++|+||+.+- +
T Consensus 133 ~~vP~T~~~~~-~~~~~~~~~~~--~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~--~- 206 (316)
T PRK05246 133 ELMPPTLVTRD-KAEIRAFRAEH--GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK--E- 206 (316)
T ss_pred ccCCCEEEeCC-HHHHHHHHHHC--CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC--C-
Confidence 47999988753 45555555543 37999999999999999997543222 1 246899999998432 2
Q ss_pred ceeeEEEEEE
Q psy3860 97 FKFDLRVKRY 106 (119)
Q Consensus 97 ~KfDlR~yvl 106 (119)
-|+|++|+
T Consensus 207 --~D~Rv~vv 214 (316)
T PRK05246 207 --GDKRILLV 214 (316)
T ss_pred --CCEEEEEE
Confidence 39999874
No 9
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.52 E-value=4.2e-07 Score=64.62 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=44.9
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc---------CCCceEEeeccCCccccCC
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV---------MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------~~~~~vvQ~YI~~Plli~g 96 (119)
+++|+|++-. +.+++.++++++.+ +|+||..|+.|+|+.+++..+..+. ...++++|+|++.- -+|
T Consensus 10 ~~~P~T~vs~-~~~~i~~f~~~~~~--~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i--~~G 84 (173)
T PF02955_consen 10 ELIPPTLVSR-DKEEIRAFIEEHGD--IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI--KEG 84 (173)
T ss_dssp CCS--EEEES--HHHHHHHHHHHSS--EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG--GG-
T ss_pred ccCcCEEEEC-CHHHHHHHHHHCCC--EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc--cCC
Confidence 7899999975 45666666665544 9999999999999999998642221 24579999999953 355
Q ss_pred ceeeEEEEEE
Q psy3860 97 FKFDLRVKRY 106 (119)
Q Consensus 97 ~KfDlR~yvl 106 (119)
|.|+.++
T Consensus 85 ---DkRii~~ 91 (173)
T PF02955_consen 85 ---DKRIILF 91 (173)
T ss_dssp ---EEEEEEE
T ss_pred ---CEEEEEE
Confidence 7788764
No 10
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.47 E-value=9.6e-07 Score=68.48 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=54.9
Q ss_pred cccceeeeCcchHHHHHHH-HhcCCceEEEecCCC---CCCCcEEEeccCCcCccC-CCceEEeeccCCccccCCceeeE
Q psy3860 27 IFPKSWSLPRQWKEVISYN-REHADETLILKPTRG---AEGKGIKILNFIPEHEVM-DQDASCQVYLSNVLLINGFKFDL 101 (119)
Q Consensus 27 ~~P~T~~lp~~~~~~~~~~-~~~~~~~wI~KP~~g---~~G~GI~l~~~~~~~i~~-~~~~vvQ~YI~~Plli~g~KfDl 101 (119)
-.|+|+++.+...+..... ..+.+.+.|+||..| +.|+++.++.+.+ .+.. ..++++|+||++| -.|+
T Consensus 128 ~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~-~L~~l~~p~~lQEfVnh~------g~d~ 200 (328)
T PLN02941 128 GVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQE-GLSKLEPPLVLQEFVNHG------GVLF 200 (328)
T ss_pred CCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHH-HHHhcCCcEEEEEecCCC------CEEE
Confidence 4899999966432232211 234567899999999 9999999998887 5532 3479999999986 4799
Q ss_pred EEEEE
Q psy3860 102 RVKRY 106 (119)
Q Consensus 102 R~yvl 106 (119)
|+||+
T Consensus 201 RVfVv 205 (328)
T PLN02941 201 KVYVV 205 (328)
T ss_pred EEEEE
Confidence 99985
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.44 E-value=2.4e-06 Score=65.57 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=51.7
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCc-------c--CCCceEEeeccCCccccCC
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHE-------V--MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i-------~--~~~~~vvQ~YI~~Plli~g 96 (119)
..+|+|.+.. +.+++.+.+++. +..|+||..|++|+|+..++..+..+ . ...++++|+||+.+ .+
T Consensus 132 ~~vP~T~v~~-~~~~~~~~~~~~--g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~---~~ 205 (312)
T TIGR01380 132 KVIPPTLVTR-DKAEIRAFLAEH--GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEI---KE 205 (312)
T ss_pred CCCCCEEEeC-CHHHHHHHHHHc--CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccc---cC
Confidence 4689999764 345555555543 26999999999999999997643122 1 24589999999853 22
Q ss_pred ceeeEEEEEE
Q psy3860 97 FKFDLRVKRY 106 (119)
Q Consensus 97 ~KfDlR~yvl 106 (119)
-|+|++|+
T Consensus 206 --~D~Rv~vv 213 (312)
T TIGR01380 206 --GDKRILLI 213 (312)
T ss_pred --CCEEEEEE
Confidence 49999874
No 12
>PRK12458 glutathione synthetase; Provisional
Probab=98.41 E-value=2.3e-06 Score=66.49 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=53.1
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCc-Cc-------cCCCceEEeeccCCccccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-HE-------VMDQDASCQVYLSNVLLINGF 97 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~-~i-------~~~~~~vvQ~YI~~Plli~g~ 97 (119)
..+|+|++... .+++.+.+.+....+.|+||..|++|+||.+++..++ .+ ....++++|+||+.+ .
T Consensus 139 ~~vP~T~v~~~-~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~---~-- 212 (338)
T PRK12458 139 EVRPTTHISRN-KEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGA---E-- 212 (338)
T ss_pred CCCCCEEEeCC-HHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCC---C--
Confidence 36999988753 4555555554433459999999999999999986652 12 134589999999854 1
Q ss_pred eeeEEEEEE
Q psy3860 98 KFDLRVKRY 106 (119)
Q Consensus 98 KfDlR~yvl 106 (119)
..|+|++++
T Consensus 213 ~gDiRv~vv 221 (338)
T PRK12458 213 EGDVRILLL 221 (338)
T ss_pred CCCEEEEEE
Confidence 259999863
No 13
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.9e-06 Score=66.55 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=49.1
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------C--CCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------M--DQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~--~~~~vvQ~YI~~P 91 (119)
--+|+|.+.-+. .+......+..+...|+||..|++|+||.++++.+.++. . ...+++|+||+.+
T Consensus 132 ipvP~T~i~~~~-~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 132 IPVPPTLITRDP-DEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205 (318)
T ss_pred CCCCCEEEEcCH-HHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc
Confidence 347999999653 344444455567899999999999999999999882221 2 2469999999977
No 14
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.23 E-value=1e-05 Score=56.14 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------
Q psy3860 4 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------ 77 (119)
Q Consensus 4 l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------ 77 (119)
+..|..+.+.+++. ..+ .|+++.+.+ .+++.+..... +.+||+||..|+.|+|+.++++.+ ++.
T Consensus 2 ~~dK~~~~~~~~~~------gv~-~P~~~~~~~-~~~~~~~~~~~-~~p~vvKp~~g~gs~gv~~~~~~~-~l~~~~~~~ 71 (184)
T PF13535_consen 2 CNDKYRMRELLKKA------GVP-VPKTRIVDS-EEELRAFAEDL-GFPFVVKPVDGSGSRGVFIVHSPE-ELEAALAEI 71 (184)
T ss_dssp TCCHHHHHHHHHHH------TS-----EEEECS-HHHHHHHHHHS-SSSEEEEESS-STTTT-EEESSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHc------CcC-CCCEEEECC-HHHHHHHHHHc-CCCEEEEcCccccCCCEEEeCCHH-HHHHHHHHH
Confidence 45677776666643 123 888998865 45566554432 378999999999999999999887 553
Q ss_pred ------CCCceEEeeccCC
Q psy3860 78 ------MDQDASCQVYLSN 90 (119)
Q Consensus 78 ------~~~~~vvQ~YI~~ 90 (119)
....+++|+||+.
T Consensus 72 ~~~~~~~~~~~ivqe~i~g 90 (184)
T PF13535_consen 72 REDSPLGNGPVIVQEYIPG 90 (184)
T ss_dssp HHHHS-HSSSEEEEE---S
T ss_pred HHhcccCCccEEEEEeeee
Confidence 1357999999993
No 15
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.19 E-value=5.4e-06 Score=61.35 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=50.8
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-----------CCCceEEeeccCCccccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-----------MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-----------~~~~~vvQ~YI~~Plli~g 96 (119)
.|+|+.+.+ .+++.+.+.+ -+.++|+||..|+.|+|+.++++.+ ++. ...++++|+||+.+
T Consensus 103 ~P~t~~~~~-~~~~~~~~~~-~~~p~vvKP~~g~~g~gv~~i~~~~-~l~~~~~~~~~~~~~~~~~lvQe~I~~~----- 174 (277)
T TIGR00768 103 QPRTGLAGS-PEEALKLIEE-IGFPVVLKPVFGSWGRLVSLARDKQ-AAETLLEHFEQLNGPQNLFYVQEYIKKP----- 174 (277)
T ss_pred CCCEEEeCC-HHHHHHHHHh-cCCCEEEEECcCCCCCceEEEcCHH-HHHHHHHHHHHhcccCCcEEEEeeecCC-----
Confidence 799988864 4455544433 2368999999999999999999876 432 12479999999943
Q ss_pred ceeeEEEEE
Q psy3860 97 FKFDLRVKR 105 (119)
Q Consensus 97 ~KfDlR~yv 105 (119)
.-+|+|+++
T Consensus 175 ~~~~~rv~v 183 (277)
T TIGR00768 175 GGRDIRVFV 183 (277)
T ss_pred CCceEEEEE
Confidence 126888876
No 16
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.18 E-value=5.8e-06 Score=62.79 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=50.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCCccccCCcee
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSNVLLINGFKF 99 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~Kf 99 (119)
+|+|....+ .++..+.+.+..+.++|+||..|+.|.|+.++++.+ ++. ....+++|+||+.. .-.
T Consensus 114 ~P~t~~~~~-~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~-~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~ 186 (300)
T PRK10446 114 LPVTGIAHS-PDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQ-AAESVIDAFRGLNAHILVQEYIKEA-----QGC 186 (300)
T ss_pred CCCEEEeCC-HHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHH-HHHHHHHHHHhcCCCEEEEeeeccC-----CCc
Confidence 788877743 333433333222468999999999999999998765 331 24579999999732 137
Q ss_pred eEEEEEE
Q psy3860 100 DLRVKRY 106 (119)
Q Consensus 100 DlR~yvl 106 (119)
|+|+.|+
T Consensus 187 d~rv~vi 193 (300)
T PRK10446 187 DIRCLVV 193 (300)
T ss_pred eEEEEEE
Confidence 9998875
No 17
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.93 E-value=2.8e-05 Score=58.00 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=49.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccCCccccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLSNVLLIN 95 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~~Plli~ 95 (119)
.|+|+.+.+ .++......+ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 102 ~P~t~~~~~-~~~~~~~~~~-~~~P~vvKP~~g~~g~gv~~v~~~~-~l~~~~~~~~~~~~~~~~~~ivQefI~~~---- 174 (280)
T TIGR02144 102 TPRTYLAFD-REAALKLAEA-LGYPVVLKPVIGSWGRLVALIRDKD-ELESLLEHKEVLGGSQHKLFYIQEYINKP---- 174 (280)
T ss_pred CCCeEeeCC-HHHHHHHHHH-cCCCEEEEECcCCCcCCEEEECCHH-HHHHHHHHHHhhcCCcCCeEEEEcccCCC----
Confidence 688888753 3444433322 3457999999999999999998776 321 12469999999854
Q ss_pred CceeeEEEEEE
Q psy3860 96 GFKFDLRVKRY 106 (119)
Q Consensus 96 g~KfDlR~yvl 106 (119)
..|+|++++
T Consensus 175 --~~d~~v~vi 183 (280)
T TIGR02144 175 --GRDIRVFVI 183 (280)
T ss_pred --CCceEEEEE
Confidence 367888764
No 18
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.75 E-value=0.00016 Score=56.01 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=31.7
Q ss_pred ccceeeeCcc---hHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCC
Q psy3860 28 FPKSWSLPRQ---WKEVISYNREHADETLILKPTRGAEGKGIKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~---~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~ 73 (119)
+|+|+.+-+. .+.+.+.+. .....++||..|++|+||.+++..+
T Consensus 52 vP~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~ 98 (317)
T TIGR02291 52 VPELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRK 98 (317)
T ss_pred CCCEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEecc
Confidence 7999988432 233444443 2346999999999999999997764
No 19
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.58 E-value=0.0003 Score=53.47 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=44.4
Q ss_pred ccceeeeCcchHHHHHH-HHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISY-NREHADETLILKPTRGAEGKGIKILNFIPEHEV----MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~-~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----~~~~~vvQ~YI~~ 90 (119)
.|+|+.+.+ .+++.+. ....-+.++|+||..|+.|+|+.++++.+ ++. ...++++|+||+.
T Consensus 126 ~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~-el~~~~~~~~~~lvqeyi~G 191 (326)
T PRK12767 126 TPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKE-ELEFLLEYVPNLIIQEFIEG 191 (326)
T ss_pred CCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHH-HHHHHHHhCCCeEEEeccCC
Confidence 688887743 4444432 12234678999999999999999999877 442 3458999999964
No 20
>PRK06849 hypothetical protein; Provisional
Probab=97.53 E-value=0.00076 Score=52.89 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-----CC
Q psy3860 5 ESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-----MD 79 (119)
Q Consensus 5 ~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-----~~ 79 (119)
..|..+.+.+++. ..+ .|+|+.+.+ .+++.+...+....++|+||..|+.|.|+.++.+.+ .+. ..
T Consensus 115 ~DK~~~~~~~~~~------Gip-vP~t~~v~~-~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~-~l~~~~~~~~ 185 (389)
T PRK06849 115 HNKWEFAEQARSL------GLS-VPKTYLITD-PEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEA-ALKELPISKD 185 (389)
T ss_pred hCHHHHHHHHHHc------CCC-CCCEEEeCC-HHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHH-HhcccccCCC
Confidence 4455555544443 123 799999854 455554433323679999999999999999987754 332 23
Q ss_pred CceEEeeccCCc
Q psy3860 80 QDASCQVYLSNV 91 (119)
Q Consensus 80 ~~~vvQ~YI~~P 91 (119)
.++++|+||+.+
T Consensus 186 ~~~ivQe~I~G~ 197 (389)
T PRK06849 186 NPWVMQEFIQGK 197 (389)
T ss_pred CCeEEEEEecCC
Confidence 469999999865
No 21
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.45 E-value=0.00033 Score=57.77 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=48.5
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEE-eccCCcCcc--------CCCceEEeeccCCccccCCce
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHEV--------MDQDASCQVYLSNVLLINGFK 98 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l-~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~K 98 (119)
+|++....+ .+++.+..++.. ..++||..|++|+||.+ +++.+ ++. ....+++|+||. .
T Consensus 312 VP~~~~~~~-~~~~~~~~~~~G--~vVVKP~~G~~G~Gv~v~v~~~~-eL~~a~~~a~~~~~~vlvEe~i~--------G 379 (547)
T TIGR03103 312 VPEQQLAGN-GEAVEAFLAEHG--AVVVKPVRGEQGKGISVDVRTPD-DLEAAIAKARQFCDRVLLERYVP--------G 379 (547)
T ss_pred CCCEEEECC-HHHHHHHHHHhC--CEEEEECCCCCCcCeEEecCCHH-HHHHHHHHHHhcCCcEEEEEecc--------C
Confidence 899888764 445555544322 48999999999999997 66665 442 235789999996 2
Q ss_pred eeEEEEEE
Q psy3860 99 FDLRVKRY 106 (119)
Q Consensus 99 fDlR~yvl 106 (119)
.|+|+.|+
T Consensus 380 ~d~Rv~Vi 387 (547)
T TIGR03103 380 EDLRLVVI 387 (547)
T ss_pred CeEEEEEE
Confidence 59999853
No 22
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.36 E-value=0.00044 Score=58.77 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=49.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEE-eccCCcCcc--------CCCceEEeeccCCccccCCce
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHEV--------MDQDASCQVYLSNVLLINGFK 98 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l-~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~K 98 (119)
.|++....+ .++..+..++ -+.+.++||..|++|+|+.+ +++.+ ++. ....++||+||+ .
T Consensus 229 vP~~~~v~s-~~~a~~~a~~-iG~PvVVKP~~G~~G~GV~~~v~~~~-el~~a~~~a~~~~~~viVEe~I~--------G 297 (727)
T PRK14016 229 VPEGRVVTS-AEDAWEAAEE-IGYPVVVKPLDGNHGRGVTVNITTRE-EIEAAYAVASKESSDVIVERYIP--------G 297 (727)
T ss_pred CCCeeEeCC-HHHHHHHHHH-cCCCEEEEECCCCCCCceEEecCCHH-HHHHHHHHHHHhCCeEEEEEecC--------C
Confidence 677776643 4455444433 36789999999999999998 77766 442 246899999997 2
Q ss_pred eeEEEEEE
Q psy3860 99 FDLRVKRY 106 (119)
Q Consensus 99 fDlR~yvl 106 (119)
.|+|++|+
T Consensus 298 ~d~Rv~Vv 305 (727)
T PRK14016 298 KDHRLLVV 305 (727)
T ss_pred ceEEEEEE
Confidence 58998763
No 23
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.32 E-value=0.00031 Score=56.63 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=46.7
Q ss_pred CCcccceeeeCc-------chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCc-C----cc--CCCceEEeeccCC
Q psy3860 25 YNIFPKSWSLPR-------QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-H----EV--MDQDASCQVYLSN 90 (119)
Q Consensus 25 ~~~~P~T~~lp~-------~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~-~----i~--~~~~~vvQ~YI~~ 90 (119)
-.++|.|..+.. +..++.+...+ ...-||+||.-+..|+||.+=...+. + +. ..++||+|+|+.-
T Consensus 307 ~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a-~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 307 RRHVPWTRLLTAGRTTYQGEDVDLVEFAIA-NRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred HHhCCceEEEcCccccccccchhHHHHHHh-chhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 368999999976 22344443333 34789999999999999999766651 1 11 3569999999984
No 24
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.29 E-value=0.0012 Score=56.42 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCC--cCcc--------CCCceEEeeccCCccccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIP--EHEV--------MDQDASCQVYLSNVLLINGF 97 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~--~~i~--------~~~~~vvQ~YI~~Plli~g~ 97 (119)
.|++..+.. .++..+.+.+..+.+.|+||..|++|+||.++.+.. +++. ....++||+||. |
T Consensus 503 vP~~~~~~~-~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G- 574 (752)
T PRK02471 503 VPAGDEFTS-LEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------G- 574 (752)
T ss_pred CCCEEEEcC-HHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------C-
Confidence 677777643 344444444323568999999999999999986543 1221 245799999996 3
Q ss_pred eeeEEEEEE
Q psy3860 98 KFDLRVKRY 106 (119)
Q Consensus 98 KfDlR~yvl 106 (119)
-|+|+.|+
T Consensus 575 -~E~Rv~Vi 582 (752)
T PRK02471 575 -TEYRFFVL 582 (752)
T ss_pred -CEEEEEEE
Confidence 48898764
No 25
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=97.26 E-value=0.00078 Score=50.87 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=43.0
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+|+.+... +++..... ..+.++|+||..|+.|+|+.++.+.+ ++. ....+++|+||+
T Consensus 113 ~p~~~~~~~~-~~~~~~~~-~~~~P~ivKP~~g~~s~Gv~~v~~~~-el~~~~~~~~~~~~~~lvEe~i~ 179 (304)
T PRK01372 113 TPPWIVLTRE-EDLLAAID-KLGLPLVVKPAREGSSVGVSKVKEED-ELQAALELAFKYDDEVLVEKYIK 179 (304)
T ss_pred CCCEEEEeCc-chHHHHHh-hcCCCEEEeeCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCcEEEEcccC
Confidence 7888877542 33333332 23568999999999999999999877 432 246799999997
No 26
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.20 E-value=0.00075 Score=54.52 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=42.1
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.+++.+..++ -+.+.|+||..|..|+|++++++.+ ++. .....++++||++|
T Consensus 140 ~~ee~~~~a~~-iGyPVivKa~~GgGg~G~r~v~~~~-el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 140 DNEEALAIAEE-IGYPVIVKAAAGGGGRGMRVVRNEE-ELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CHHHHHHHHHH-cCCCEEEEECCCCCcccEEEECCHH-HHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 34566666554 3489999999999999999999998 542 34459999999999
No 27
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.17 E-value=0.00019 Score=49.95 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=17.3
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCccC--CCceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEVM--DQDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~~--~~~~vvQ~YI~ 89 (119)
...||+||..|+.|.||.++++.+ ++.. ....++|+||+
T Consensus 31 ~~~~viKp~~G~Gg~~i~~~~~~~-~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKPRDGAGGEGIRIVDSED-ELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEESS-------B--SS---TTE-------EEEE---
T ss_pred CCcEEEEeCCCCCCCCeEEECCch-hhccccccceEEeeeeC
Confidence 578999999999999999999997 5432 22349999998
No 28
>PRK07206 hypothetical protein; Provisional
Probab=97.09 E-value=0.00086 Score=52.81 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=44.4
Q ss_pred ccceeeeCcchHHHHHHHHhcC--CceEEEecCCCCCCCcEEEeccCCcCcc---------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHA--DETLILKPTRGAEGKGIKILNFIPEHEV---------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~--~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+.+++.. +.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+-
T Consensus 123 ~p~~~~~~~-~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G 200 (416)
T PRK07206 123 AARQINTAD-WEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKG-DWKHAFNAILGKANKLGLVNETVLVQEYLIG 200 (416)
T ss_pred cccEEecCC-HHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHH-HHHHHHHHHHhccccCCCCCCeEEEEEcccc
Confidence 677777753 445555444321 338999999999999999999887 442 1257999999985
Q ss_pred c
Q psy3860 91 V 91 (119)
Q Consensus 91 P 91 (119)
+
T Consensus 201 ~ 201 (416)
T PRK07206 201 T 201 (416)
T ss_pred E
Confidence 4
No 29
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.03 E-value=0.002 Score=48.76 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=46.6
Q ss_pred ccceeeeC-cc--hHHH-HHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCCccccC
Q psy3860 28 FPKSWSLP-RQ--WKEV-ISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSNVLLIN 95 (119)
Q Consensus 28 ~P~T~~lp-~~--~~~~-~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~Plli~ 95 (119)
.|+|+.+. +. ..+. .......-+.++|+||..++.|.|+.++.+.+ ++. ....+++|+||+
T Consensus 120 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~-el~~~~~~~~~~~~~~lvEe~i~------ 192 (315)
T TIGR01205 120 TPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEE-ELQAALDEAFEYDEEVLVEQFIK------ 192 (315)
T ss_pred CCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHH-HHHHHHHHHHhcCCcEEEEcCCC------
Confidence 68888775 21 1111 11112234678999999999999999999887 442 245799999985
Q ss_pred CceeeEEEEEE
Q psy3860 96 GFKFDLRVKRY 106 (119)
Q Consensus 96 g~KfDlR~yvl 106 (119)
| .|+++.++
T Consensus 193 G--~e~~v~vi 201 (315)
T TIGR01205 193 G--RELEVSIL 201 (315)
T ss_pred C--EEEEEEEE
Confidence 3 36666654
No 30
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=97.03 E-value=0.0038 Score=47.52 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=50.3
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCc-----Ccc-------CCC--ceEEeeccCCcccc----CCce
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-----HEV-------MDQ--DASCQVYLSNVLLI----NGFK 98 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~-----~i~-------~~~--~~vvQ~YI~~Plli----~g~K 98 (119)
+.+++.+.++......+++||..|++|+||.++...+. ++. ... .|++|++|..=-.+ ..-=
T Consensus 60 ~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~sv 139 (285)
T PF14397_consen 60 SIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSV 139 (285)
T ss_pred CHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCC
Confidence 45667777776555889999999999999999987651 111 122 89999999843332 2344
Q ss_pred eeEEEEEEE
Q psy3860 99 FDLRVKRYA 107 (119)
Q Consensus 99 fDlR~yvlv 107 (119)
-++|+.+++
T Consensus 140 nTiRvvT~~ 148 (285)
T PF14397_consen 140 NTIRVVTFL 148 (285)
T ss_pred CcEEEEEEE
Confidence 699998774
No 31
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.86 E-value=0.0053 Score=52.42 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=47.3
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCC--cCc--------cCCCceEEeeccCCccccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIP--EHE--------VMDQDASCQVYLSNVLLINGF 97 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~--~~i--------~~~~~~vvQ~YI~~Plli~g~ 97 (119)
.|++..+... .+..+....-...+.++||..|++|+||.++.+.. +++ ......+||+||+ |
T Consensus 490 VP~g~~~~~~-~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G- 561 (737)
T TIGR01435 490 VPFGDEFSSQ-ALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------G- 561 (737)
T ss_pred CCCEEEECCH-HHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------C-
Confidence 6777777543 23333333222467899999999999999987642 122 1345799999996 3
Q ss_pred eeeEEEEEE
Q psy3860 98 KFDLRVKRY 106 (119)
Q Consensus 98 KfDlR~yvl 106 (119)
-|+|+.|+
T Consensus 562 -~EyRv~VI 569 (737)
T TIGR01435 562 -TEYRFFVL 569 (737)
T ss_pred -CEEEEEEE
Confidence 59999875
No 32
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.85 E-value=0.0065 Score=47.34 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHh--cCCceEEEecCCCCCCCcEEEeccCCcCcc-----
Q psy3860 5 ESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNRE--HADETLILKPTRGAEGKGIKILNFIPEHEV----- 77 (119)
Q Consensus 5 ~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~--~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----- 77 (119)
-.|..++..+++ ..- -.|+++...+ .++|.+...+ .++....+||..|..|.|.+++.....++.
T Consensus 106 ~dK~~~y~~~~~------~~i-pvp~~~~v~t-~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~ 177 (329)
T PF15632_consen 106 DDKAAFYEFMEA------NGI-PVPPYWRVRT-ADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEP 177 (329)
T ss_pred hhHHHHHHHHHh------CCC-CCCCEEEeCC-HHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCC
Confidence 356666666555 112 4889888854 7888776653 456779999999999999999994331221
Q ss_pred ------------------CCCceEEeeccCCc
Q psy3860 78 ------------------MDQDASCQVYLSNV 91 (119)
Q Consensus 78 ------------------~~~~~vvQ~YI~~P 91 (119)
...+++|++|++.|
T Consensus 178 ~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 178 DSRRISLDELLAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred CcceeCHHHHHHHHhccCCCCCcEEecCCCCC
Confidence 24689999999976
No 33
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.85 E-value=0.0027 Score=51.87 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=39.5
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||++|
T Consensus 140 ~~~e~~~~a~~-igyPvvIKp~~GgGG~Gv~iv~~~~-eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 140 DIEEAKEIAEE-IGYPVIIKASAGGGGIGMRVVYSEE-ELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred CHHHHHHHHHH-hCCCEEEEeCCCCCCCeEEEeCCHH-HHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 34444444332 4678999999999999999999887 542 13478999999876
No 34
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=96.82 E-value=0.0033 Score=54.45 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=48.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEE-eccCCcCcc--------CCCceEEeeccCCccccCCce
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKI-LNFIPEHEV--------MDQDASCQVYLSNVLLINGFK 98 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l-~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~K 98 (119)
.|++..+.+ .++..+..++ -+.+.++||..|++|+|+.+ +++.+ ++. ....++||+||. |
T Consensus 228 vP~~~~~~s-~~ea~~~~~~-ig~PvVVKP~~g~~G~GV~l~v~s~~-el~~a~~~a~~~~~~vlVEefI~------G-- 296 (864)
T TIGR02068 228 VPEGTVVQS-AEDAWEAAQD-LGYPVVIKPYDGNHGRGVTINILTRD-EIESAYEAAVEESSGVIVERFIT------G-- 296 (864)
T ss_pred CCCEEEECC-HHHHHHHHHH-cCCCEEEEECCCCCccCEEEEeCCHH-HHHHHHHHHHhhCCcEEEEEecc------C--
Confidence 788877754 3444443332 35789999999999999998 77766 442 245799999996 3
Q ss_pred eeEEEEEE
Q psy3860 99 FDLRVKRY 106 (119)
Q Consensus 99 fDlR~yvl 106 (119)
.|+|++|+
T Consensus 297 ~e~rvlVv 304 (864)
T TIGR02068 297 RDHRLLVV 304 (864)
T ss_pred CEEEEEEE
Confidence 58888764
No 35
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.78 E-value=0.0024 Score=49.43 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=42.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+...+ -+.++|+||..++ .|+|+.++++.+ ++. ....+++|+||+.
T Consensus 113 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~~g~~g~Gv~~v~~~~-el~~a~~~~~~~~~lvEe~I~~ 179 (352)
T TIGR01161 113 VPPFLVIKD-EEELDAALQE-LGFPVVLKARTGGYDGRGQYRIRNEA-DLPQAAKELGDRECIVEEFVPF 179 (352)
T ss_pred CCCccEeCC-HHHHHHHHHH-cCCCEEEEeCCCCCCCCCEEEECCHH-HHHHHHHhcCCCcEEEEecCCC
Confidence 577777654 3444444332 3578999999875 899999999887 542 2348999999983
No 36
>PRK08462 biotin carboxylase; Validated
Probab=96.71 E-value=0.0038 Score=49.85 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=38.9
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++.....+ .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 142 ~~~~~~~~~~-~~g~PvvvKP~~g~gs~Gv~~v~~~~-eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 208 (445)
T PRK08462 142 SYEEAKKIAK-EIGYPVILKAAAGGGGRGMRVVEDES-DLENLYLAAESEALSAFGDGTMYMEKFINNP 208 (445)
T ss_pred CHHHHHHHHH-HcCCCEEEEeCCCCCCCCeEEECCHH-HHHHHHHHHHHHHHhccCCCcEEEeccCCCC
Confidence 3444444333 24678999999999999999999887 442 12468999999866
No 37
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=96.71 E-value=0.0046 Score=50.09 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=42.5
Q ss_pred cceeeeC-cchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 29 PKSWSLP-RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 29 P~T~~lp-~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
|.+.... .+.++..+..+ .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 131 p~~~~~~~~~~~~~~~~~~-~igyPvvvKP~~ggGg~Gv~iv~~~~-eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~ 206 (478)
T PRK08463 131 PGTEKLNSESMEEIKIFAR-KIGYPVILKASGGGGGRGIRVVHKEE-DLENAFESCKREALAYFNNDEVFMEKYVVNP 206 (478)
T ss_pred CCccccCCCCHHHHHHHHH-HhCCCEEEEeCCCCCCCceEEeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4344433 23444444433 24678999999999999999999887 442 23578999999865
No 38
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=96.68 E-value=0.0025 Score=49.21 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
-+.+||+||..+..+.||.++++.+ ++. ....++||+||+.
T Consensus 161 ~~~P~vVKP~~~gsS~Gv~~v~~~~-el~~a~~~~~~~~~~vlvEefI~G 209 (333)
T PRK01966 161 LGLPVFVKPANLGSSVGISKVKNEE-ELAAALDLAFEYDRKVLVEQGIKG 209 (333)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHH-HHHHHHHHHHhcCCcEEEEcCcCC
Confidence 4678999999999999999999887 442 3468999999983
No 39
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=96.67 E-value=0.0033 Score=48.89 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=43.9
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+... .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 116 ~p~~~~~~~-~~~~~~~~~-~~g~P~VvKP~~g~~s~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 116 TSRYMFADS-LDELREAVE-KIGYPCVVKPVMSSSGKGQSVVRGPE-DIEKAWEYAQEGARGGAGRVIVEEFIDF 187 (380)
T ss_pred CCCceEeCC-HHHHHHHHH-HcCCCEEEEECCCcCCCCeEEECCHH-HHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 667777654 344444332 24579999999999999999999887 442 1347999999984
No 40
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.53 E-value=0.0058 Score=48.92 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=39.0
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..+ .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 140 ~~~e~~~~~~-~ig~PvvvKP~~g~gs~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (449)
T TIGR00514 140 DEEENVRIAK-RIGYPVIIKATAGGGGRGMRVVREPD-ELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206 (449)
T ss_pred CHHHHHHHHH-HhCCCEEEEeCCCCCCCccEEECCHH-HHHHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3444444333 23578999999999999999999887 442 23469999999876
No 41
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=96.49 E-value=0.004 Score=47.17 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
-+.+||+||..|+.|.|+.++.+.+ ++. ....++||+||+
T Consensus 124 l~~P~vvKP~~g~~s~Gv~~v~~~~-el~~~~~~~~~~~~~vlVEeyI~ 171 (299)
T PRK14571 124 LGYPCVVKPRREGSSIGVFICESDE-EFQHALKEDLPRYGSVIVQEYIP 171 (299)
T ss_pred cCCCEEEecCCCCCcCCEEEECCHH-HHHHHHHHHHhhCCcEEEEcccc
Confidence 3578999999999999999999877 442 235799999997
No 42
>PRK02186 argininosuccinate lyase; Provisional
Probab=96.47 E-value=0.0092 Score=51.80 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=45.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc---------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV---------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ ..++..... .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+-+
T Consensus 122 ~P~~~~v~~-~~e~~~~~~-~~~~PvVVKP~~g~gS~GV~~v~~~~-el~~a~~~~~~~~~~~~lvEEfI~G~ 191 (887)
T PRK02186 122 VPRTHALAL-RAVALDALD-GLTYPVVVKPRMGSGSVGVRLCASVA-EAAAHCAALRRAGTRAALVQAYVEGD 191 (887)
T ss_pred CCCEEEeCC-HHHHHHHHH-hCCCCEEEEeCCCCCCCCeEEECCHH-HHHHHHHHHHhcCCCcEEEeecccCC
Confidence 588887754 344444433 23578999999999999999999887 442 24689999999865
No 43
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.41 E-value=0.0069 Score=48.90 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=39.1
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 143 ~~~e~~~~~~~-igyPvvvKp~~gggg~Gv~~v~~~~-eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 143 SLDAALEVAAR-IGYPLMIKAAAGGGGRGIRVAHDAA-QLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred CHHHHHHHHHH-hCCCEEEEECCCCCCCeEEEECCHH-HHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 34444443332 4678999999999999999999887 442 23568999999865
No 44
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.37 E-value=0.0061 Score=54.37 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=43.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|.+.....+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 135 ~P~~~~~v~s~eea~~~a~~-iGyPvVVKP~~GgGGrGv~vV~~~e-EL~~a~~~a~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 135 IPGSEGPIDDIEEALEFAEE-IGYPIMLKASAGGGGRGMRIVRSEE-ELEEAFERAKREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred CCCcccCCCCHHHHHHHHHH-hCCCEEEEECCCCCCCCeEEeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 34444233445555554432 4678999999999999999999887 442 13579999999976
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.32 E-value=0.014 Score=51.68 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=44.9
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .++..+..++ -+.++|+||..+..|+|+.++.+.+ ++. ...++++|+||++
T Consensus 684 ~P~~~~v~s-~ee~~~~~~~-igyPvIVKP~~~~Gg~gv~iv~~~e-eL~~~l~~a~~~s~~~~vlVeefI~~ 753 (1050)
T TIGR01369 684 QPKWKTATS-VEEAVEFASE-IGYPVLVRPSYVLGGRAMEIVYNEE-ELRRYLEEAVEVSPEHPVLIDKYLED 753 (1050)
T ss_pred CCCeEEECC-HHHHHHHHHh-cCCCEEEEECCCCCCCCeEEECCHH-HHHHHHHHHHHhCCCCCEEEeecCCC
Confidence 688887754 4555544332 3578999999999999999999887 442 2457999999984
No 46
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.30 E-value=0.0075 Score=47.14 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=42.5
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~ 89 (119)
.|+++.+.+ .++..+... .-+.++|+||..|+.|+|+.++++.+ ++. ....++||+||+
T Consensus 129 ~p~~~~~~s-~~~l~~~~~-~~g~P~VvKP~~g~~s~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 129 TSPYRFADS-LEELRAAVE-EIGYPCVVKPVMSSSGKGQSVVRSPE-DIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCCceEECC-HHHHHHHHH-hcCCCEEEEeCCCcCCCCeEEECCHH-HHHHHHHHHHhhccccCCCEEEEEecC
Confidence 566666643 445544433 24578999999999999999999887 442 125799999997
No 47
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.29 E-value=0.0087 Score=53.37 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=40.0
Q ss_pred cchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 36 RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 36 ~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.+.++..+... .-+.++|+||..|+.|+|++++++.+ ++. ....+++|+||++|
T Consensus 139 ~~~eea~~~ae-~iGyPvIVKP~~GGGGrG~riV~~~e-EL~~a~~~a~~ea~~~fg~~~vlIEefI~g~ 206 (1143)
T TIGR01235 139 ETMEEVLDFAA-AIGYPVIIKASWGGGGRGMRVVRSEA-DVADAFQRAKSEAKAAFGNDEVYVEKLIERP 206 (1143)
T ss_pred CCHHHHHHHHH-HcCCCEEEEECCCCCCCccEEeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC
Confidence 34444444433 24678999999999999999999887 442 23578999999876
No 48
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=96.28 E-value=0.01 Score=47.04 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=43.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+..++ -+.++++||..++.|+|+.++.+.+ ++. ....++||+||+.+
T Consensus 117 ~p~~~~~~~-~~~~~~~~~~-~~~P~VvKP~~~~gs~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~ 191 (420)
T PRK00885 117 TAAYETFTD-AEEALAYLDE-KGAPIVVKADGLAAGKGVVVAMTLE-EAKAAVDDMLAGNKFGDAGARVVIEEFLDGE 191 (420)
T ss_pred CCCeEEeCC-HHHHHHHHHH-cCCCEEEEeCCCCCCCcEEEeCCHH-HHHHHHHHHhhcccccCCCCeEEEEEccCCc
Confidence 677666643 4444444433 3568999999999999999999877 331 12479999999864
No 49
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=96.22 E-value=0.0099 Score=47.02 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.8
Q ss_pred ccceeeeCcchHHHHHHHHhcCCce-EEEecCCCCCCCcEEEeccCCcCcc-------------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADET-LILKPTRGAEGKGIKILNFIPEHEV-------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~-wI~KP~~g~~G~GI~l~~~~~~~i~-------------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+..++ -+.+ +|+||..++.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 119 ~p~~~~~~~-~~~~~~~~~~-~g~P~~VvKp~~~~gg~Gv~~v~~~~-el~~~~~~~~~~~~g~~~~~~lvEe~i~G~ 193 (423)
T TIGR00877 119 TAEYEVFTD-PEEALSYIQE-KGAPAIVVKADGLAAGKGVIVAKTNE-EAIKAVEEILEQKFGDAGERVVIEEFLDGE 193 (423)
T ss_pred CCCeEEECC-HHHHHHHHHh-cCCCeEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHHHhcCCCCCeEEEEECccCc
Confidence 566666543 4444444433 3457 999999999999999999877 431 12479999999864
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.21 E-value=0.014 Score=46.54 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=38.8
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 140 ~~~~~~~~~~~-~g~PvvvKP~~g~gs~Gv~iv~~~~-el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (451)
T PRK08591 140 DEEEALAIAKE-IGYPVIIKATAGGGGRGMRVVRTEA-ELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206 (451)
T ss_pred CHHHHHHHHHH-cCCCEEEEECCCCCCceEEEECCHH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 34444444332 3578999999999999999999887 442 13468999999865
No 51
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.20 E-value=0.0094 Score=46.67 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=42.9
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCC-CCCCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTR-GAEGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~-g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+...+ -+.++|+||.. |+.|+|+.++++.+ ++. ....++||+||+.
T Consensus 115 ~p~~~~v~s-~~~l~~~~~~-~g~P~vlKp~~~g~~g~Gv~~v~~~~-el~~a~~~~~~~~~ivEe~I~~ 181 (372)
T PRK06019 115 VAPFAVVDS-AEDLEAALAD-LGLPAVLKTRRGGYDGKGQWVIRSAE-DLEAAWALLGSVPCILEEFVPF 181 (372)
T ss_pred CCCceEeCC-HHHHHHHHHH-cCCcEEEEeCCCCcCCCCeEEECCHH-HHHHHHHhcCCCCEEEEecCCC
Confidence 566666643 4555444332 46799999997 46899999999887 553 2458999999983
No 52
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=96.16 E-value=0.022 Score=44.84 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=42.0
Q ss_pred cceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 29 PKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 29 P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
|++..+.+ .++..++.++ -+.++++||..++.|+|+.++.+.+ ++. ....++||+||+.+
T Consensus 83 p~~~~~~~-~~ea~~~~~~-~g~PvVvKp~~~~~gkGV~iv~~~~-el~~a~~~~~~~~~~~~vlvEe~i~G~ 152 (379)
T PRK13790 83 ADYKEVER-KKDALTYIEN-CELPVVVKKDGLAAGKGVIIADTIE-AARSAIEIMYGDEEEGTVVFETFLEGE 152 (379)
T ss_pred CCEEEECC-HHHHHHHHHh-cCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhcCCCCeEEEEEcccCc
Confidence 55555533 4444444432 4578999999999999999999877 431 13478999999854
No 53
>PRK05586 biotin carboxylase; Validated
Probab=96.11 E-value=0.008 Score=48.16 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=38.6
Q ss_pred hHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 38 WKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 38 ~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.++..+..+ .-+.+.|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 141 ~~e~~~~~~-~igyPvvvKP~~gggg~Gv~~v~~~~-el~~a~~~~~~~~~~~~~~~~vivEe~i~g~ 206 (447)
T PRK05586 141 EEEALEIAK-EIGYPVMVKASAGGGGRGIRIVRSEE-ELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206 (447)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCCCCCeeEEECCHH-HHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 444444333 24578999999999999999999887 542 13578999999865
No 54
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.97 E-value=0.014 Score=47.26 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.8
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..+ .-+.++|+||..|+.|+|+.++++.+ ++. .....++++||+.|
T Consensus 139 ~~~e~~~~~~-~igyPvvvKp~~ggGg~Gv~~v~~~~-eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 139 DLDEALAEAE-RIGYPVMLKATSGGGGRGIRRCNSRE-ELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred CHHHHHHHHH-HcCCcEEEEeCCCCCCCCceEeCCHH-HHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 3444444333 24678999999999999999999887 542 13468999999766
No 55
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=95.94 E-value=0.014 Score=45.42 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
-..++|+||..|+.+.||.++++.+ ++. ....++||+||+
T Consensus 170 l~~PvvVKP~~ggsS~GV~~v~~~~-el~~a~~~~~~~~~~vlVEefI~ 217 (347)
T PRK14572 170 LGFPQFLKPVEGGSSVSTYKITNAE-QLMTLLALIFESDSKVMSQSFLS 217 (347)
T ss_pred cCCCEEEecCCCCCCCCEEEECCHH-HHHHHHHHHHhcCCCEEEEcCcc
Confidence 3578999999999999999999887 442 245789999996
No 56
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.93 E-value=0.015 Score=51.48 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=45.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..+ .-+.++|+||..++.|+|+.++.+.+ ++. ...++++|+||+.+
T Consensus 684 ~P~~~~~~s-~ee~~~~~~-~igyPvvVKP~~~~Gg~Gv~iv~~~e-eL~~~~~~a~~~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 684 QPPNGTATS-VEEALEVAE-EIGYPVLVRPSYVLGGRAMEIVYDEE-ELERYMREAVKVSPDHPVLIDKFLEGA 754 (1066)
T ss_pred CCCeEEECC-HHHHHHHHH-hcCCCeEEEeCCCCCCCcEEEECCHH-HHHHHHHHHHhhCCCCcEEEEecCCCC
Confidence 678777754 344444433 24578999999999999999999887 442 24579999999977
No 57
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=95.70 E-value=0.0072 Score=47.59 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=33.8
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc-------------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV-------------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------------~~~~~vvQ~YI~~P 91 (119)
+.+.|+||..|+.|+|+.++++.+ ++. ....+++|+||.-+
T Consensus 149 ~~PvIVKp~~g~ggkGv~i~~s~~-El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 149 DRPVIVKLPGAKGGRGYFIAKSPE-EFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred CCCEEEEeCCCCCCCCeEEeCCHH-HHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 468999999999999999999987 331 14689999999854
No 58
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.64 E-value=0.029 Score=45.11 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=31.3
Q ss_pred CceEEEecCCCCCCCcEEEeccCCc---C-c-------cCCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPE---H-E-------VMDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~---~-i-------~~~~~~vvQ~YI~~P 91 (119)
..+.++||..++.|+|+.++.+..+ + + ......|||+||+-+
T Consensus 141 ~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~ 193 (435)
T PRK06395 141 MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGE 193 (435)
T ss_pred CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCc
Confidence 5689999999999999999953211 1 1 123569999999865
No 59
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=95.63 E-value=0.0078 Score=45.72 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc-------CCCceEEeeccC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV-------MDQDASCQVYLS 89 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~~~~~vvQ~YI~ 89 (119)
-+.++|+||..|+.|.|+.++++.+ ++. ....++||+||+
T Consensus 129 ~~~P~vVKP~~ggss~Gv~~v~~~~-eL~~a~~~~~~~~~~lvEefI~ 175 (296)
T PRK14569 129 ISFPVAVKPSSGGSSIATFKVKSIQ-ELKHAYEEASKYGEVMIEQWVT 175 (296)
T ss_pred cCCCEEEEeCCCCCCcCeEEcCCHH-HHHHHHHHHHhcCCEEEEcccc
Confidence 3578999999999999999999887 442 234799999995
No 60
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=95.58 E-value=0.047 Score=42.94 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=33.3
Q ss_pred cCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 48 HADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 48 ~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.-+.++|+||..+..|.||.++++.+ ++. .....+||+||+
T Consensus 169 ~lg~PviVKP~~~GsS~Gv~~v~~~~-el~~al~~a~~~~~~vlVEefI~ 217 (364)
T PRK14570 169 VLGYPVIVKPAVLGSSIGINVAYNEN-QIEKCIEEAFKYDLTVVIEKFIE 217 (364)
T ss_pred hcCCCEEEEeCCCCCCCcEEEeCCHH-HHHHHHHHHHhCCCCEEEECCcC
Confidence 34678999999988899999998877 442 235689999998
No 61
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=95.52 E-value=0.03 Score=40.87 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=42.9
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+..|-+-..-.+.++..+..++ -+.+.++||..|.+|+|+.++.+.+ ++. ...+.++.+||+++
T Consensus 15 p~~pg~~~~~~~~eea~~~a~~-iGyPVliKas~ggGG~gm~iv~~~~-eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 15 PVPPGSTVPISSVEEALEFAEE-IGYPVLIKASAGGGGRGMRIVHNEE-ELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp BBSSBESSSBSSHHHHHHHHHH-H-SSEEEEETTSSTTTSEEEESSHH-HHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred CcCCCCCCCCCCHHHHHHHHHh-cCCceEEeecccccccccccccchh-hhhhhhhhccccCccccccceEEEeeehhhh
Confidence 4444444322334554444332 3678999999999999999999988 552 36789999999988
Q ss_pred cc
Q psy3860 92 LL 93 (119)
Q Consensus 92 ll 93 (119)
--
T Consensus 93 re 94 (211)
T PF02786_consen 93 RE 94 (211)
T ss_dssp EE
T ss_pred hh
Confidence 43
No 62
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=95.51 E-value=0.011 Score=45.91 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=40.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|+++.+... +... .+.-..+||+||..++.+.||.++++.+ ++. .....+||+||+.
T Consensus 147 ~p~~~~~~~~-~~~~---~~~l~~P~iVKP~~~gsS~Gv~~v~~~~-eL~~a~~~a~~~~~~vlVEe~I~G 212 (343)
T PRK14568 147 TPAFWTVTAD-ERPD---AATLTYPVFVKPARSGSSFGVSKVNSAD-ELDYAIESARQYDSKVLIEEAVVG 212 (343)
T ss_pred cCCEEEEECC-chhh---hhhcCCCEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCcEEEECCcCC
Confidence 4666666432 1111 1123578999999999999999999887 552 2457899999984
No 63
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.44 E-value=0.012 Score=46.88 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=38.6
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 140 ~~~e~~~~~~~-~~~P~VvKP~~g~gs~Gv~iv~~~~-el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~ 206 (450)
T PRK06111 140 DAEEAIAIARQ-IGYPVMLKASAGGGGIGMQLVETEQ-ELTKAFESNKKRAANFFGNGEMYIEKYIEDP 206 (450)
T ss_pred CHHHHHHHHHH-hCCCEEEEeCCCCCCceEEEECCHH-HHHHHHHHHHHHHHHhcCCCcEEEEcccCCC
Confidence 34444443332 3578999999999999999999887 442 13479999999865
No 64
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=95.42 E-value=0.021 Score=45.15 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.0
Q ss_pred CceEEEecCCCCC--CCcEEEeccCCcCcc---------------CCCceEEeeccCC
Q psy3860 50 DETLILKPTRGAE--GKGIKILNFIPEHEV---------------MDQDASCQVYLSN 90 (119)
Q Consensus 50 ~~~wI~KP~~g~~--G~GI~l~~~~~~~i~---------------~~~~~vvQ~YI~~ 90 (119)
+.+.|+||..+++ |+|++++++.+ ++. .-.++++|+||.-
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~e-El~~~a~~l~~~g~I~~~~~~~~iIQEyI~G 208 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYE-DFYEKSEELIKAGVIDREDLKNARIEEYVIG 208 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHH-HHHHHHHhhhhcCcccccccccceeEeccCC
Confidence 5789999999999 99999999876 332 1246679999973
No 65
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=95.15 E-value=0.021 Score=41.38 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
-+.++|+||..+....||..+++.+ ++. .....+|++||+
T Consensus 32 l~~P~~VKP~~~GsS~Gi~~v~~~~-el~~ai~~~~~~~~~vlVEefI~ 79 (203)
T PF07478_consen 32 LGFPLFVKPASEGSSIGISKVHNEE-ELEEAIEKAFKYDDDVLVEEFIS 79 (203)
T ss_dssp HSSSEEEEESSTSTTTTEEEESSHH-HHHHHHHHHTTTHSEEEEEE--S
T ss_pred cCCCEEEEECCCCccEEEEEcCCHH-HHHHHHHHHhhhcceEEEEeeec
Confidence 4578999999999999999999887 542 356899999996
No 66
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.15 E-value=0.038 Score=49.09 Aligned_cols=60 Identities=8% Similarity=0.165 Sum_probs=44.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .++..+..+ .-+.++|+||..+..|+|+.++.+.+ ++. ...++++|+||+.
T Consensus 685 ~P~~~~~~s-~ee~~~~~~-~igyPvVVKP~~~~Gg~gv~iv~~~e-eL~~~l~~~~s~~~~vlIeefI~G 752 (1068)
T PRK12815 685 HVPGLTATD-EEEAFAFAK-RIGYPVLIRPSYVIGGQGMAVVYDEP-ALEAYLAENASQLYPILIDQFIDG 752 (1068)
T ss_pred CCCeEEeCC-HHHHHHHHH-hcCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHhhcCCCCEEEEEeecC
Confidence 677776643 455544433 24679999999999999999999876 442 3467999999973
No 67
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.09 E-value=0.064 Score=48.29 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=43.6
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+..|.+..+. +.++..+..+ .-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 128 Pt~p~~~lv~-s~dea~~~a~-~igyPvVVKP~~ggGG~GV~iv~~~e-EL~~a~~~~~~~~~~~f~~~~vlVEefI~g~ 204 (1201)
T TIGR02712 128 PLLPGTGLLS-SLDEALEAAK-EIGYPVMLKSTAGGGGIGMQKCDSAA-ELAEAFETVKRLGESFFGDAGVFLERFVENA 204 (1201)
T ss_pred CCCCceeecC-CHHHHHHHHH-hcCCeEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 3334455554 3455544433 24679999999999999999999887 442 13468999999854
No 68
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.11 Score=40.60 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred cchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccCCccccCCceeeEEE
Q psy3860 36 RQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLSNVLLINGFKFDLRV 103 (119)
Q Consensus 36 ~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~~Plli~g~KfDlR~ 103 (119)
...++|.+... +.+.+.++||..++.|+|-.++++.+ ++. .....||-.+|+ ||+-+
T Consensus 136 ~s~~e~~~a~~-~iGfPcvvKPvMSSSGkGqsvv~~~e-~ve~AW~~A~~g~R~~~~RVIVE~fv~---------fd~Ei 204 (394)
T COG0027 136 DSLEELRAAVE-KIGFPCVVKPVMSSSGKGQSVVRSPE-DVEKAWEYAQQGGRGGSGRVIVEEFVK---------FDFEI 204 (394)
T ss_pred ccHHHHHHHHH-HcCCCeecccccccCCCCceeecCHH-HHHHHHHHHHhcCCCCCCcEEEEEEec---------ceEEE
Confidence 33556665543 46789999999999999999999998 664 356788888886 99999
Q ss_pred EEEEEeecCCCCc
Q psy3860 104 KRYAVEKYRQKGS 116 (119)
Q Consensus 104 yvlv~~~~~~~~~ 116 (119)
=+|.+...++.++
T Consensus 205 TlLtvr~~~~~~~ 217 (394)
T COG0027 205 TLLTVRAVDGTGS 217 (394)
T ss_pred EEEEEEEecCCCC
Confidence 9988888888776
No 69
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=94.89 E-value=0.072 Score=43.55 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=39.8
Q ss_pred eeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCc--------Cc----c-----------CCCceEEeecc
Q psy3860 32 WSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE--------HE----V-----------MDQDASCQVYL 88 (119)
Q Consensus 32 ~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~--------~i----~-----------~~~~~vvQ~YI 88 (119)
|..-++.++..++++. . .++|+||..++.|+|+.++.+.++ .+ . ....++||+||
T Consensus 128 ~~~~~~~~ea~~~~~~-~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL 205 (486)
T PRK05784 128 YKVFYDVEEAAKFIEY-G-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKV 205 (486)
T ss_pred ceEeCCHHHHHHHHhh-c-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEcc
Confidence 4432345555555532 2 489999999999999999997651 11 0 13479999999
Q ss_pred CCc
Q psy3860 89 SNV 91 (119)
Q Consensus 89 ~~P 91 (119)
+-+
T Consensus 206 ~G~ 208 (486)
T PRK05784 206 DGV 208 (486)
T ss_pred CCe
Confidence 865
No 70
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=94.61 E-value=0.071 Score=42.74 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 38 WKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 38 ~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.++..+++++ .+.++++||..++.|+|+.++.+.+ ++. ....++||+||+-+
T Consensus 132 ~~ea~~~~~~-~~~PvVVKp~~~~~gkGV~vv~~~e-el~~a~~~~~~~~~~g~~~~~vlIEEfl~G~ 197 (426)
T PRK13789 132 YSSSLSYLES-EMLPIVIKADGLAAGKGVTVATEKK-MAKRALKEIFKDKKFGQSGNQVVIEEFMEGQ 197 (426)
T ss_pred HHHHHHHHHh-cCCCEEEEeCCCCCCCcEEEECCHH-HHHHHHHHHHhhccccCCCCeEEEEECcCCe
Confidence 4555555443 3568999999999999999999877 331 11368999999864
No 71
>PLN02257 phosphoribosylamine--glycine ligase
Probab=94.28 E-value=0.12 Score=41.68 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=41.6
Q ss_pred cceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 29 PKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 29 P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
|+...+. +.++..+++++ -+.+.++||..++.|+|+.++++.+ ++. ....++||+||+-+
T Consensus 118 p~~~~~~-~~~e~~~~~~~-~g~PvVVKp~~~~~GkGV~iv~~~~-el~~a~~~~~~~~~fg~~~~~vlIEefi~G~ 191 (434)
T PLN02257 118 AKYETFT-DPAAAKKYIKE-QGAPIVVKADGLAAGKGVVVAMTLE-EAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE 191 (434)
T ss_pred CCeEEeC-CHHHHHHHHHH-cCCCEEEEcCCCCCCCCEEEECCHH-HHHHHHHHHHhhhhccCCCCeEEEEECCCCC
Confidence 4544443 33444444432 3468999999999999999999877 331 12478999999865
No 72
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=94.21 E-value=0.054 Score=39.38 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=54.7
Q ss_pred cchhhHHHHHHHHHHHHhC-CCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----
Q psy3860 3 NLESKAILAYHLNRMKYFF-PDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV---- 77 (119)
Q Consensus 3 ~l~~K~~l~~~l~~~~~~~-~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~---- 77 (119)
.++.|-.+...|.+.++.. ++.++.++.||.- . ..++. ..+..+.++|-..+++|-|=..+++.. ++.
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e~FPLieQt~yp-n-h~em~----s~~~fPvVvKvG~~h~G~GKvkv~n~~-~~qDi~s 80 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYP-N-HREML----SAPRFPVVVKVGHAHAGMGKVKVDNQQ-DFQDIAS 80 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTTTS-B---EEES-S-GGGGC----S-SSSSEEEEESS-STTTTEEEE-SHH-HHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHhCCcccccceeeecC-C-hhhhc----cCCCCCEEEEEccccCceeEEEEccHH-HHHHHHH
Confidence 5677888888888887776 4689999999984 3 22333 226789999999999999999998887 442
Q ss_pred ---CCCceE-EeeccCCccccCCceeeEEE
Q psy3860 78 ---MDQDAS-CQVYLSNVLLINGFKFDLRV 103 (119)
Q Consensus 78 ---~~~~~v-vQ~YI~~Plli~g~KfDlR~ 103 (119)
....|+ +-.|| ..|+|+|+
T Consensus 81 ll~~~~~Y~T~EPfI-------d~kyDirv 103 (203)
T PF02750_consen 81 LLAITKDYATTEPFI-------DAKYDIRV 103 (203)
T ss_dssp HHHHHTS-EEEEE----------EEEEEEE
T ss_pred HHHhcCceEEeeccc-------cceeEEEE
Confidence 122333 33344 45899998
No 73
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=93.87 E-value=0.083 Score=38.30 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=40.3
Q ss_pred ceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------------CCCceEEeeccCCc
Q psy3860 30 KSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------------MDQDASCQVYLSNV 91 (119)
Q Consensus 30 ~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------------~~~~~vvQ~YI~~P 91 (119)
+...+. +.++-.+++++.....+++||+..+.|+|+.++.+.++.+. .....||++|+.-+
T Consensus 19 ~~~~f~-~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G~ 92 (194)
T PF01071_consen 19 KYKVFT-DYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEGE 92 (194)
T ss_dssp -EEEES-SHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---SE
T ss_pred CeeEEC-CHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCCe
Confidence 334443 46666667766555567999999999999999988763211 24688999999843
No 74
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.83 E-value=0.11 Score=46.20 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=44.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .+++.+..++ -+.+.|+||..|..|+|+.++++.+ ++. ....+++|+||+..
T Consensus 143 vp~~~~v~s-~~e~~~~~~~-ig~PvVVKP~~g~gg~Gv~iv~~~e-eL~~a~~~~~~~s~~~~vlvEe~I~G~ 213 (1066)
T PRK05294 143 VPRSGIAHS-MEEALEVAEE-IGYPVIIRPSFTLGGTGGGIAYNEE-ELEEIVERGLDLSPVTEVLIEESLLGW 213 (1066)
T ss_pred CCCeeeeCC-HHHHHHHHHH-cCCCeEEEcCCCCCCCCeEEECCHH-HHHHHHHHHHhhCCCCeEEEEEcccCc
Confidence 677777754 3444444332 3568999999999999999999887 542 13578999999854
No 75
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=93.71 E-value=0.079 Score=41.21 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCC------CCCcEEEeccCCcCcc
Q psy3860 4 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGA------EGKGIKILNFIPEHEV 77 (119)
Q Consensus 4 l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~------~G~GI~l~~~~~~~i~ 77 (119)
||.|-.|++...++- --+|+|+.+.++.+.....+ ..+.|+||.+|. |.+.+..-++. ++.
T Consensus 112 lceKPllY~ra~elg-------l~~P~Ty~v~S~~d~~~~el----~FPvILKP~mgg~~~~~araKa~~a~d~e--e~k 178 (415)
T COG3919 112 LCEKPLLYNRAEELG-------LPYPKTYLVNSEIDTLVDEL----TFPVILKPGMGGSVHFEARAKAFTAADNE--EMK 178 (415)
T ss_pred HhhCcHHHHHHHHhC-------CCCcceEEecchhhhhhhhe----eeeEEecCCCCCcceeehhhheeeccCHH--HHH
Confidence 456666665544432 23899999987665555443 367999998653 22222222211 121
Q ss_pred ----------CCCceEEeeccC
Q psy3860 78 ----------MDQDASCQVYLS 89 (119)
Q Consensus 78 ----------~~~~~vvQ~YI~ 89 (119)
...+.|||++|.
T Consensus 179 ~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 179 LALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred HHHHHHHHhcCCCceEEEEecC
Confidence 467899999986
No 76
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=93.56 E-value=0.26 Score=39.41 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=39.2
Q ss_pred eEEEecCCCCCCCcEEEeccCCcCcc------CCCceEEeeccCCccccCCceeeEEEEE
Q psy3860 52 TLILKPTRGAEGKGIKILNFIPEHEV------MDQDASCQVYLSNVLLINGFKFDLRVKR 105 (119)
Q Consensus 52 ~wI~KP~~g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~Plli~g~KfDlR~yv 105 (119)
.|+.||..|-.|.+|.+++... .+. ..+.+|.|+|++-| .++|+-.=+-+|+
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~-~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~ 366 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGG-ESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWM 366 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCe-EEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEE
Confidence 4999999999999999997644 332 25789999999977 5566544455554
No 77
>PRK06524 biotin carboxylase-like protein; Validated
Probab=93.42 E-value=0.15 Score=41.82 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=33.1
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc-------CCCceEEeeccCC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV-------MDQDASCQVYLSN 90 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~~~~~vvQ~YI~~ 90 (119)
-+.+.++||..|+.|+|+.++++.+ ++. .....++|+||+.
T Consensus 180 IGyPvVVKP~~GGSS~GV~~Vkn~e-ELe~a~~~~~~~~~viVEe~I~G 227 (493)
T PRK06524 180 LGDDLVVQTPYGDSGSTTFFVRGQR-DWDKYAGGIVGQPEIKVMKRIRN 227 (493)
T ss_pred CCCcEEEEECCCCCCcCEEEeCCHH-HHHHHHHHhcCCCCEEEEeccCc
Confidence 4578999999999999999999987 543 2245799999963
No 78
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=93.26 E-value=0.11 Score=46.09 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=43.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+..++ -+.+.|+||..|..|+|+.++++.+ ++. ....++||+||...
T Consensus 142 vp~~~~v~s-~~e~~~~~~~-igyPvIVKP~~g~gg~Gv~iv~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 142 VPESEIAHS-VEEALAAAKE-IGYPVIVRPAFTLGGTGGGIAYNRE-ELKEIAERALSASPINQVLVEKSLAGW 212 (1050)
T ss_pred CCCeeecCC-HHHHHHHHHH-hCCCeEEECCCCCCCCCeEEECCHH-HHHHHHHHHHhcCCCCcEEEEEcccCc
Confidence 566666643 3444443332 3578999999999999999999887 542 12579999999865
No 79
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=93.23 E-value=0.21 Score=38.64 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=36.7
Q ss_pred CcccceeeeCcchHHHHHHHH-hcCCceEEEecCCCC---CCCcEEEeccCCcCccC-CCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNR-EHADETLILKPTRGA---EGKGIKILNFIPEHEVM-DQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~-~~~~~~wI~KP~~g~---~G~GI~l~~~~~~~i~~-~~~~vvQ~YI~~P 91 (119)
=..|+...+.++.++..+.++ .+-..+.|+||...+ ....+.++-+.+ .+.. ..+.|+|+||+.-
T Consensus 113 i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~-gL~~L~~P~VlQeFVNHg 182 (307)
T PF05770_consen 113 IRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE-GLKDLKPPCVLQEFVNHG 182 (307)
T ss_dssp EE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG-GGTT--SSEEEEE----T
T ss_pred ccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH-HHhhcCCCEEEEEeecCC
Confidence 357888888755444444443 345789999998632 445777887776 5542 4589999999965
No 80
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=92.66 E-value=1 Score=38.16 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=38.5
Q ss_pred ceEEEecCCCCCCCcEEEeccCCcCcc------CCCceEEeeccCCccccCCceeeEEEEE
Q psy3860 51 ETLILKPTRGAEGKGIKILNFIPEHEV------MDQDASCQVYLSNVLLINGFKFDLRVKR 105 (119)
Q Consensus 51 ~~wI~KP~~g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~Plli~g~KfDlR~yv 105 (119)
..|+.||..|-.|.+|.+++.....+. ..+.+|.|+|.+-| ..+|...=+-.|+
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~ 587 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFT 587 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEE
Confidence 349999999999999999976331221 34679999999977 4455444445554
No 81
>PLN02735 carbamoyl-phosphate synthase
Probab=92.50 E-value=0.23 Score=44.50 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=42.8
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..++-...+.|+||..++.|+|+.++.+.+ ++. .....+||+||...
T Consensus 159 vp~~~~v~s-~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~e-EL~~a~~~a~~~s~~~~VLVEe~I~G~ 230 (1102)
T PLN02735 159 TPPSGIATT-LDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKE-EFETICKAGLAASITSQVLVEKSLLGW 230 (1102)
T ss_pred CCCeeEeCC-HHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHH-HHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 566666643 344333333222268999999999999999999887 442 23578999999863
No 82
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=92.28 E-value=1.4 Score=31.26 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=39.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEe-cCCCCCCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILK-PTRGAEGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~K-P~~g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|+...+.+ .+++.....+ -+.++|+| +..|.-|+|..++++.+ ++. ...++|+.++|+-
T Consensus 8 ~~~~~~i~~-~~~l~~a~~~-iG~P~vlK~~~~GYDGkGq~~i~~~~-dl~~a~~~~~~~~~ilE~~v~f 74 (172)
T PF02222_consen 8 TAPYATIDS-LEDLEEAAES-IGFPAVLKTRRGGYDGKGQFVIRSEE-DLEKAWQELGGGPCILEEFVPF 74 (172)
T ss_dssp B-EEEEESS-HHHHHHHHHH-HTSSEEEEESSSSCTTTTEEEESSGG-GHHHHHHHTTTSCEEEEE---E
T ss_pred CCCeEEECC-HHHHHHHHHH-cCCCEEEEccCcCcCCCccEEECCHH-HHHHHHHhcCCCcEEEEeccCC
Confidence 344444443 4455544332 36789999 67899999999999988 654 4678999999983
No 83
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.28 E-value=0.32 Score=40.65 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=41.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++....+ .-+.+.|+||..++ .|+|+.++++.+ ++. ....+++++||+.
T Consensus 136 tp~~~~v~~-~~el~~~~~-~ig~P~VvKP~~ggs~g~Gv~~v~~~~-eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 136 LPEFMEIDD-LESAEKAGD-LFGYPLMLKSRRLAYDGRGNAVAKTEE-DLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred CCCeEEeCC-HHHHHHHHH-hcCCcEEEEeCCCCCCCCCeEEECCHH-HHHHHHHHhhCCCCcEEEEecCCC
Confidence 566666543 344444333 24578999998655 799999999887 542 2357899999974
No 84
>PLN02735 carbamoyl-phosphate synthase
Probab=92.23 E-value=0.26 Score=44.16 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=42.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+..+ .-+.+.|+||..+..|+|+.++.+.+ ++. ...+++||+||+..
T Consensus 717 ~p~~~~v~s-~eea~~~a~-~iGyPvvVKP~~g~gG~G~~iV~~~e-eL~~al~~a~~~~~~~~vlVEefI~~g 787 (1102)
T PLN02735 717 QPKGGIARS-EADALAIAK-RIGYPVVVRPSYVLGGRAMEIVYSDD-KLKTYLETAVEVDPERPVLVDKYLSDA 787 (1102)
T ss_pred CCCeeEeCC-HHHHHHHHH-hcCCCeEEEeCCCCCCCcEEEECCHH-HHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence 455554432 344433332 24678999999999999999999887 542 23469999999754
No 85
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=92.18 E-value=0.24 Score=44.14 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=44.3
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..++ -+.+.|+||..|..|+|+.++++.+ ++. ....++||+||+..
T Consensus 143 vp~~~~v~s-~ee~~~~~~~-igyPvVVKP~~g~gG~Gv~iv~~~e-EL~~a~~~~~~~s~~~~vLVEe~I~G~ 213 (1068)
T PRK12815 143 VPESEIVTS-VEEALAFAEK-IGFPIIVRPAYTLGGTGGGIAENLE-ELEQLFKQGLQASPIHQCLLEESIAGW 213 (1068)
T ss_pred CCCceeeCC-HHHHHHHHHH-cCCCEEEEECcCCCCCceEEECCHH-HHHHHHHHHHhcCCCCeEEEEEccCCC
Confidence 577777754 4444443332 3568999999999999999999887 442 13579999999854
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=92.13 E-value=0.14 Score=42.62 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=46.1
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.+|=+--.-.+..++.+. .+.-+.+.++|..+|.+|+|++++.+.. ++. .....++-+|+++|
T Consensus 129 p~VPG~~g~~qd~~~~~~~-A~eiGyPVlIKAsaGGGGKGMRvv~~~~-e~~e~l~sarrEA~asFGddrv~iEkyl~~P 206 (645)
T COG4770 129 PTVPGYHGPIQDAAELVAI-AEEIGYPVLIKASAGGGGKGMRVVETPE-EFAEALESARREAKASFGDDRVFIEKYLDKP 206 (645)
T ss_pred CccCCCCCcccCHHHHHHH-HHhcCCcEEEEeccCCCCCceEeecCHH-HHHHHHHHHHHHHHhhcCCceEehhhhcCCC
Confidence 4455444333343444443 3345788999999999999999999988 442 46788999999998
Q ss_pred c
Q psy3860 92 L 92 (119)
Q Consensus 92 l 92 (119)
-
T Consensus 207 R 207 (645)
T COG4770 207 R 207 (645)
T ss_pred c
Confidence 4
No 87
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=91.90 E-value=0.084 Score=40.13 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=28.2
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCccCCCceEEeeccCC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLSN 90 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~~~~vvQ~YI~~ 90 (119)
...+|+||..||+|.||..-.+.. ++ .++|+||+-
T Consensus 138 ~~k~ViKp~dgCgge~i~~~~~~p-d~-----~i~qEfIeG 172 (307)
T COG1821 138 PKKYVIKPADGCGGEGILFGRDFP-DI-----EIAQEFIEG 172 (307)
T ss_pred CceEEecccccCCcceeeccCCCc-ch-----hhHHHhcCC
Confidence 568999999999999999887765 33 577777763
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=91.72 E-value=0.19 Score=43.72 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCC
Q psy3860 25 YNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSN 90 (119)
Q Consensus 25 ~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~ 90 (119)
-+.+|-|=-.+.+.++..++.+ .-+.+.|+|...|.+|+|.+++++.+ ++. ......+-+||+|
T Consensus 134 vPvipgt~~~~~~~ee~~~fa~-~~gyPvmiKA~~GGGGRGMR~vr~~~-~l~~~~~~AksEAkaAFG~~eVyvEk~ve~ 211 (1149)
T COG1038 134 VPVIPGTDGPIETIEEALEFAE-EYGYPVMIKAAAGGGGRGMRVVRSEA-DLAEAFERAKSEAKAAFGNDEVYVEKLVEN 211 (1149)
T ss_pred CCccCCCCCCcccHHHHHHHHH-hcCCcEEEEEccCCCccceeeecCHH-HHHHHHHHHHHHHHHhcCCCcEEhhhhhcC
Confidence 4677877777666666665544 34678999999999999999999988 552 4567889999999
Q ss_pred ccc
Q psy3860 91 VLL 93 (119)
Q Consensus 91 Pll 93 (119)
|--
T Consensus 212 pkH 214 (1149)
T COG1038 212 PKH 214 (1149)
T ss_pred cce
Confidence 843
No 89
>KOG3895|consensus
Probab=90.91 E-value=0.46 Score=37.80 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=63.3
Q ss_pred ccchhhHHHHHHHHHHHHhCC-CCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCccC--
Q psy3860 2 ANLESKAILAYHLNRMKYFFP-DEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEVM-- 78 (119)
Q Consensus 2 ~~l~~K~~l~~~l~~~~~~~~-~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~~-- 78 (119)
+++|.|-.+...|.++.+..+ +.++.+|.||. |.- .+. ......+.++|-..++.|-|-..+++.. ++.+
T Consensus 196 ynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y-PnH--K~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~-dfqDi~ 268 (488)
T KOG3895|consen 196 YNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY-PNH--KEM---LSQPTYPVVVKVGHAHSGMGKIKVENHE-DFQDIA 268 (488)
T ss_pred HHhccchHHHHHHHHHHHhcCccccccceeeec-CCc--hhh---ccCCCCcEEEEecccccccceeeecchh-hhHhHH
Confidence 357888888888888877765 78999999987 432 222 1224578999999999999999888887 5531
Q ss_pred ------CCceEEeeccCCccccCCceeeEEE
Q psy3860 79 ------DQDASCQVYLSNVLLINGFKFDLRV 103 (119)
Q Consensus 79 ------~~~~vvQ~YI~~Plli~g~KfDlR~ 103 (119)
....-+|.+|+ -|+|+|+
T Consensus 269 svval~~Tyat~epFiD-------aKYDiri 292 (488)
T KOG3895|consen 269 SVVALTKTYATAEPFID-------AKYDIRI 292 (488)
T ss_pred HHHHHHhhhhhcccccc-------ccceeeh
Confidence 22333555665 2899997
No 90
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=89.90 E-value=0.27 Score=38.63 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=26.8
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCccCCCceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~~~~vvQ~YI~ 89 (119)
..+.|+||..|++|- +.++.-.+ ++. ...+|+|+||+
T Consensus 149 ekt~IlKPv~GaGG~-~el~~~~E-e~~-~~~~i~Qefi~ 185 (389)
T COG2232 149 EKTLILKPVSGAGGL-VELVKFDE-EDP-PPGFIFQEFIE 185 (389)
T ss_pred ceeeEEeeccCCCce-eeeccccc-ccC-CcceehhhhcC
Confidence 467999999998886 44444434 332 37899999997
No 91
>KOG0238|consensus
Probab=89.71 E-value=0.31 Score=40.38 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=44.5
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.+|-.--.-++.++.....+ .-+.+.++|+..|.+|+|.++..+.+ ++. .....++-+||+||
T Consensus 125 p~vpG~~g~~qs~e~~~~~a~-eIgyPvMiKa~~GGGGkGMria~~~~-ef~~~~~~ak~Ea~~sFGdd~~llEkfi~np 202 (670)
T KOG0238|consen 125 PLVPGYHGEDQSDEEAKKVAR-EIGYPVMIKATAGGGGKGMRIAWSEE-EFEEGLESAKQEAAKSFGDDGMLLEKFIDNP 202 (670)
T ss_pred ccccCcccccccHHHHHHHHH-hcCCcEEEEeccCCCCcceEeecChH-HHHHHHHHHHHHHHhhcCcchhhHHHhccCC
Confidence 444443333233334443322 35789999999999999999999887 432 35678899999999
Q ss_pred c
Q psy3860 92 L 92 (119)
Q Consensus 92 l 92 (119)
-
T Consensus 203 R 203 (670)
T KOG0238|consen 203 R 203 (670)
T ss_pred c
Confidence 4
No 92
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.35 E-value=1.4 Score=38.09 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
-+.+.|+||..+..+.||.++++.+ ++. .....+|++||..
T Consensus 609 lg~P~iVKP~~~GsS~Gv~~v~~~~-el~~a~~~a~~~~~~vlVEe~i~~ 657 (809)
T PRK14573 609 FSFPMFVKTAHLGSSIGVFEVHNVE-ELRDKISEAFLYDTDVFVEESRLG 657 (809)
T ss_pred cCCCEEEeeCCCCCCCCEEEECCHH-HHHHHHHHHHhcCCcEEEEeccCC
Confidence 4578999999999999999999887 542 2457899998753
No 93
>KOG0369|consensus
Probab=85.42 E-value=0.69 Score=39.81 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCccc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNVLL 93 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~Pll 93 (119)
+.+.|+|...|.+|+|++++++.+ ++. ......|-++|++|--
T Consensus 184 G~PvI~KAAyGGGGRGmRvVr~~e-~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrH 240 (1176)
T KOG0369|consen 184 GLPVIIKAAYGGGGRGMRVVRSGE-DVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRH 240 (1176)
T ss_pred CCcEEEeecccCCCcceEEeechh-hHHHHHHHHHHHHHHhcCCceeeHHhhhcCcce
Confidence 578999999999999999999988 542 4678889999999843
No 94
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=83.32 E-value=3.1 Score=33.97 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCCCCcc--cceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCc-Cc--------cCCC
Q psy3860 12 YHLNRMKYFFPDEYNIF--PKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPE-HE--------VMDQ 80 (119)
Q Consensus 12 ~~l~~~~~~~~~~~~~~--P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~-~i--------~~~~ 80 (119)
.-+=+|.+.+..+-..+ ++||.+-.+ ++....+ .+. .-.++||..|++|-|..+=...++ ++ ....
T Consensus 328 ~y~P~~~~~ylge~~lL~nv~T~~c~~~-~el~~VL-~~l-~~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p~ 404 (488)
T COG2308 328 AYVPQMIEYYLGEEPLLPNVPTYWCGEP-DELEHVL-ANL-SELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADPE 404 (488)
T ss_pred HHHHHHHHHHcccccccCCCCeeecCCH-HHHHHHH-hch-hhheEeeeccCCCCcceeccccCHHHHHHHHHHHHhChh
Confidence 33444444443333333 367777432 2322222 122 346799999998888776555441 11 1467
Q ss_pred ceEEeeccC---CccccCC----ceeeEEEEEEEEe
Q psy3860 81 DASCQVYLS---NVLLING----FKFDLRVKRYAVE 109 (119)
Q Consensus 81 ~~vvQ~YI~---~Plli~g----~KfDlR~yvlv~~ 109 (119)
+||.|+-++ -|..++| +..|+|.|++.+.
T Consensus 405 ~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~ 440 (488)
T COG2308 405 NYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR 440 (488)
T ss_pred hhcccccccccccceEECCeeccccccceeEEEEcC
Confidence 899998665 3444554 6789999998543
No 95
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=81.75 E-value=1.1 Score=35.63 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=32.9
Q ss_pred eEEEecCCCCCCCcEEEeccCCcCcc------CCCceEEeeccCCc
Q psy3860 52 TLILKPTRGAEGKGIKILNFIPEHEV------MDQDASCQVYLSNV 91 (119)
Q Consensus 52 ~wI~KP~~g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~P 91 (119)
.|+.||..|-.|.+|.++....+.+. ..+.+|.|+|.+-|
T Consensus 298 ~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 298 SYVRKPLFGREGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhccccccccCCCeeEEecCCceeecCCCCccccchhhhhhccCc
Confidence 49999999999999999988552332 35789999999977
No 96
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=74.99 E-value=1.7 Score=33.99 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=17.0
Q ss_pred ceEEEecCCCCCCCcEEEeccCCcCc--------cCCCceEEe
Q psy3860 51 ETLILKPTRGAEGKGIKILNFIPEHE--------VMDQDASCQ 85 (119)
Q Consensus 51 ~~wI~KP~~g~~G~GI~l~~~~~~~i--------~~~~~~vvQ 85 (119)
.-|++||..|+.|+|+.+=...+++. .....||+|
T Consensus 288 ~~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~~P~~yVAQ 330 (330)
T PF04174_consen 288 DELVVKPADGYGGKGVYIGPKLSAERRALRAEILARPHRYVAQ 330 (330)
T ss_dssp GGEEEEE--------EEEGGG--HHHHHHHHHHHHSGGGEEEE
T ss_pred hhcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHhCccCCccC
Confidence 46899999999999999877666211 134588887
No 97
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=72.82 E-value=2.4 Score=33.27 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc---------------CCCceEEeeccCCc
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV---------------MDQDASCQVYLSNV 91 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------------~~~~~vvQ~YI~~P 91 (119)
-+.+.|+|+...-+|+|-++.++.+ +.. +-.++.+|+||--+
T Consensus 149 Idr~VIVK~pgAkggRGyFiA~s~e-ef~ek~e~l~~~gvi~~edlkna~IeEYv~G~ 205 (361)
T COG1759 149 IDRPVIVKLPGAKGGRGYFIASSPE-EFYEKAERLLKRGVITEEDLKNARIEEYVVGA 205 (361)
T ss_pred cCCceEEecCCccCCceEEEEcCHH-HHHHHHHHHHHcCCcchhhhhhceeeEEeecc
Confidence 3679999999888899999999987 321 34578999998744
No 98
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=70.53 E-value=3.8 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCc
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHE 76 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i 76 (119)
.+.+.|+||..+.+|.|-.++.+.+ ++
T Consensus 149 ig~PvIVrP~~~lGG~G~~i~~n~e-el 175 (400)
T COG0458 149 IGYPVIVKPSFGLGGSGGGIAYNEE-EL 175 (400)
T ss_pred cCCCEEEecCcCCCCCceeEEeCHH-HH
Confidence 4579999999999999999999987 44
No 99
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=69.94 E-value=20 Score=26.51 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=28.7
Q ss_pred CcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccC
Q psy3860 26 NIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFI 72 (119)
Q Consensus 26 ~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~ 72 (119)
.++|+++-...+.++.-- ..-...|++||+.||++.+|..-++.
T Consensus 35 ~~l~pll~v~~~~~~i~~---~~Lp~~fViK~nhgsg~~~i~~dk~~ 78 (239)
T PF14305_consen 35 EYLPPLLGVYDNPDDIDF---DSLPDKFVIKPNHGSGSNIIVRDKSK 78 (239)
T ss_pred ceECceeecCCChhhhhh---hcCCCCEEEEEecCCCcEEEEeCCcc
Confidence 478888877655443221 11347899999999887666655433
No 100
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=68.89 E-value=7.1 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=32.3
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc-----------------CCCceEEeeccC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV-----------------MDQDASCQVYLS 89 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-----------------~~~~~vvQ~YI~ 89 (119)
.+...|+|.++|.=|-||..+.+.+ ++. .-...|||+-|.
T Consensus 256 e~PfViVKADaGTYGMGImtv~~~~-ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 256 TQPYVIVKADAGTYGMGIMTATSGE-EVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred CCCeEEEEcCCCCCCceEEEecCHH-HHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 5678999999999999999999998 442 135788998665
No 101
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=64.68 E-value=5 Score=32.15 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=29.7
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc-----------------CCCceEEeeccCCccccCCceee
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV-----------------MDQDASCQVYLSNVLLINGFKFD 100 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-----------------~~~~~vvQ~YI~~Plli~g~KfD 100 (119)
.+...|+|.++|.=|-||..+++.+ ++. .-...|||+-|.---.+++---.
T Consensus 259 e~PfV~VKAD~GTYGMGImtV~~~~-ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAE 326 (404)
T PF08886_consen 259 EKPFVFVKADAGTYGMGIMTVKSGD-EVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAE 326 (404)
T ss_dssp S---EEEEEE-GGG-EEEEEESSGG-GGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEE
T ss_pred CCceEEEEcCCCCCCceEEEecCHH-HHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCcccc
Confidence 5678999999999999999999998 552 13578999987744344554333
No 102
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=55.56 E-value=23 Score=27.92 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=26.0
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecC--CCCCCC--cEEEeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPT--RGAEGK--GIKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~--~g~~G~--GI~l~~~~~ 73 (119)
.|+...+. +.++..+..++-...++++||. .|.+|+ |+.+.++.+
T Consensus 19 vp~~~~~~-~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~ 67 (386)
T TIGR01016 19 VPRGYVAT-SVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKE 67 (386)
T ss_pred CCCceeeC-CHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHH
Confidence 44444443 2444444433222258999998 455655 899886655
No 103
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=52.19 E-value=25 Score=28.59 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=36.0
Q ss_pred chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------C------CCceEEeeccC
Q psy3860 37 QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------M------DQDASCQVYLS 89 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~------~~~~vvQ~YI~ 89 (119)
+.++-.+++++ .+.+|.+||+..+.|+|+.+....++... . ....|+-+|++
T Consensus 126 ~~e~a~ayi~~-~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~ 190 (428)
T COG0151 126 DPEEAKAYIDE-KGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD 190 (428)
T ss_pred CHHHHHHHHHH-cCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc
Confidence 34555566653 45669999999999999999988763211 1 13467777776
No 104
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=47.67 E-value=91 Score=24.18 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 44 YNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 44 ~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
......+.+.++||....---|+..++... ++. ..+..++++++.
T Consensus 136 ~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~-d~~~~~e~a~~~d~~vl~e~~~~ 188 (317)
T COG1181 136 EVEEGLGFPLFVKPAREGSSVGRSPVNVEG-DLQSALELAFKYDRDVLREQGIT 188 (317)
T ss_pred HhhcccCCCEEEEcCCccceeeEEEeeecc-chHHHHHHHHHhCCceeeccCCC
Confidence 333456789999999887788888888877 442 466788888887
No 105
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=46.26 E-value=34 Score=24.80 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=27.0
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCC--CCCCC--cEEEeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTR--GAEGK--GIKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~--g~~G~--GI~l~~~~~ 73 (119)
+|+..+..+ .++.....+.-....|++||.. |.||+ ||.++++.+
T Consensus 18 vp~g~~a~s-~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ 66 (202)
T PF08442_consen 18 VPRGVVATS-PEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPE 66 (202)
T ss_dssp --SEEEESS-HHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHH
T ss_pred CCCeeecCC-HHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHH
Confidence 788777743 3444443333345689999984 55554 799988876
No 106
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=36.78 E-value=11 Score=17.92 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.2
Q ss_pred EeecCCCCccc
Q psy3860 108 VEKYRQKGSVF 118 (119)
Q Consensus 108 ~~~~~~~~~~~ 118 (119)
++.|.|+|.+|
T Consensus 5 ~t~FSp~Grl~ 15 (23)
T PF10584_consen 5 ITTFSPDGRLF 15 (23)
T ss_dssp TTSBBTTSSBH
T ss_pred ceeECCCCeEE
Confidence 35688999875
No 107
>KOG0368|consensus
Probab=35.51 E-value=22 Score=33.70 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCCCCcEEEeccCC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIP 73 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~ 73 (119)
-+.+.++|.+.|.+|+||+-+.+.+
T Consensus 238 IGfPvMIKASEGGGGKGIRkv~n~d 262 (2196)
T KOG0368|consen 238 IGFPVMIKASEGGGGKGIRKVENED 262 (2196)
T ss_pred cCCceEEEeccCCCCcceeeccchH
Confidence 5789999999999999999999988
No 108
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=30.20 E-value=28 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=8.4
Q ss_pred CCceeeEEEE
Q psy3860 95 NGFKFDLRVK 104 (119)
Q Consensus 95 ~g~KfDlR~y 104 (119)
.+.|||+|+-
T Consensus 3 k~kK~~~rv~ 12 (71)
T PF12286_consen 3 KNKKYDFRVT 12 (71)
T ss_pred CCCcccEEEE
Confidence 5789999995
No 109
>KOG0782|consensus
Probab=29.00 E-value=24 Score=30.19 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.1
Q ss_pred cCCceEEEecCCCCCCCcEEEeccCC
Q psy3860 48 HADETLILKPTRGAEGKGIKILNFIP 73 (119)
Q Consensus 48 ~~~~~wI~KP~~g~~G~GI~l~~~~~ 73 (119)
++...||+||....--+-..++-++.
T Consensus 350 ~k~rpFvikPtsSplmkPLLVFVNPK 375 (1004)
T KOG0782|consen 350 NKGRPFVIKPTSSPLMKPLLVFVNPK 375 (1004)
T ss_pred ccCCceEEccCCCCCCCceEEEecCC
Confidence 45679999999877777777776665
No 110
>PHA02634 hypothetical protein; Provisional
Probab=27.24 E-value=26 Score=19.73 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=17.7
Q ss_pred CCceEEEecCCCCCCCcEEEec
Q psy3860 49 ADETLILKPTRGAEGKGIKILN 70 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~ 70 (119)
.+.+|++|-..+++|-||++=.
T Consensus 12 s~~YF~CK~~~~nCgi~Ifl~~ 33 (49)
T PHA02634 12 LEAYFMCKLQELNCDASILLNK 33 (49)
T ss_pred chheeEEecCCCCcCHhHhHHH
Confidence 3578999988899999987643
No 111
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.98 E-value=53 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=23.1
Q ss_pred ccCCccccCCcee--e------------EEEEEEEEeecCCCCccc
Q psy3860 87 YLSNVLLINGFKF--D------------LRVKRYAVEKYRQKGSVF 118 (119)
Q Consensus 87 YI~~Plli~g~Kf--D------------lR~yvlv~~~~~~~~~~~ 118 (119)
-+.+||..++.+| | ..+|+| .+..+|.|.||
T Consensus 131 ~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iL-CnPHNP~Grvw 175 (388)
T COG1168 131 VIENPLVEDDGRYEIDFDALEKAFVDERVKLFIL-CNPHNPTGRVW 175 (388)
T ss_pred EEeccccccCCcEEecHHHHHHHHhcCCccEEEE-eCCCCCCCccc
Confidence 4567888766666 3 257887 57899999998
No 112
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=24.73 E-value=66 Score=27.92 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCceEEEecCCC
Q psy3860 39 KEVISYNREHADETLILKPTRG 60 (119)
Q Consensus 39 ~~~~~~~~~~~~~~wI~KP~~g 60 (119)
.+|+.+.+.+++++|.+||+..
T Consensus 640 KEfm~y~kdGp~g~W~Lk~~e~ 661 (968)
T COG5179 640 KEFMDYVKDGPDGVWVLKPSEA 661 (968)
T ss_pred HHHHHHhhcCCCceEEeccccc
Confidence 5677787888999999999863
No 113
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=24.30 E-value=51 Score=19.76 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=9.3
Q ss_pred EEeec-CCCCcccC
Q psy3860 107 AVEKY-RQKGSVFI 119 (119)
Q Consensus 107 v~~~~-~~~~~~~~ 119 (119)
|-++| +|||+.+|
T Consensus 35 v~~t~~r~dgs~y~ 48 (75)
T PF07193_consen 35 VFETWERPDGSMYM 48 (75)
T ss_pred EEEEEEcCCCeEEE
Confidence 45667 88888764
No 114
>PF13053 DUF3914: Protein of unknown function (DUF3914)
Probab=23.44 E-value=45 Score=21.00 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=7.3
Q ss_pred CceeeEEEE
Q psy3860 96 GFKFDLRVK 104 (119)
Q Consensus 96 g~KfDlR~y 104 (119)
+-|||||..
T Consensus 41 ~iKFDIRss 49 (92)
T PF13053_consen 41 PIKFDIRSS 49 (92)
T ss_pred CeeEeeecc
Confidence 679999974
No 115
>PLN02235 ATP citrate (pro-S)-lyase
Probab=21.18 E-value=1.5e+02 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=28.3
Q ss_pred ccceeeeCcchHHHHHHHHh---cCCceEEEecCC--CCCCC--cEEEeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNRE---HADETLILKPTR--GAEGK--GIKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~---~~~~~wI~KP~~--g~~G~--GI~l~~~~~ 73 (119)
+|+........++..+..++ -....|++||.. |.||+ ||.+.++++
T Consensus 27 vP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~ 79 (423)
T PLN02235 27 LPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLA 79 (423)
T ss_pred CCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHH
Confidence 46666552334555544433 123569999995 55554 699998887
No 116
>KOG1678|consensus
Probab=21.08 E-value=34 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCceEEEecCCC
Q psy3860 40 EVISYNREHADETLILKPTRG 60 (119)
Q Consensus 40 ~~~~~~~~~~~~~wI~KP~~g 60 (119)
.|....+.+++.-||+||...
T Consensus 137 p~h~aIRrdp~~nwI~kpvhK 157 (204)
T KOG1678|consen 137 PFHKAIRRDPRINWICKPVHK 157 (204)
T ss_pred cHHHHHhcCCCcccccchhhh
Confidence 355666778899999999753
No 117
>PHA02756 hypothetical protein; Provisional
Probab=20.97 E-value=98 Score=21.20 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=18.8
Q ss_pred CceEEEecCCCCCCCcEEEecc
Q psy3860 50 DETLILKPTRGAEGKGIKILNF 71 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~ 71 (119)
-..-|.||++.+.|-.++.++.
T Consensus 48 lslii~~psn~c~gwav~~~~~ 69 (164)
T PHA02756 48 LSLIITKPSNECEGWAVKFFEG 69 (164)
T ss_pred eEEEEEccCCcccceEEEEEee
Confidence 3578999999999999999863
No 118
>PF11201 DUF2982: Protein of unknown function (DUF2982); InterPro: IPR021367 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.92 E-value=1.9e+02 Score=20.23 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHh
Q psy3860 7 KAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNRE 47 (119)
Q Consensus 7 K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~ 47 (119)
.+.|+..|+.+++..+ |+.+-++=.+..+.++|+..+++
T Consensus 110 ~AMfanRm~~lr~~lG--Ydlfi~~~~LDR~~~eFv~Llr~ 148 (152)
T PF11201_consen 110 IAMFANRMQYLRQLLG--YDLFIPASDLDRDPEEFVGLLRR 148 (152)
T ss_pred HHHHHHHHHHHHHhcC--ceEEeEhhhccCCHHHHHHHHHH
Confidence 4556666666666654 66555556677778889887653
Done!