Query psy3860
Match_columns 119
No_of_seqs 152 out of 1079
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 19:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 1.2E-31 4E-36 208.4 6.2 107 1-109 71-212 (380)
2 1i7n_A Synapsin II; synapse, p 98.4 5.3E-07 1.8E-11 68.2 7.6 81 12-106 120-208 (309)
3 2p0a_A Synapsin-3, synapsin II 98.3 1.1E-06 3.6E-11 67.5 6.8 81 12-106 137-225 (344)
4 1pk8_A RAT synapsin I; ATP bin 98.3 1.4E-06 4.7E-11 68.5 7.2 82 11-106 231-320 (422)
5 1gsa_A Glutathione synthetase; 98.3 2.7E-06 9.1E-11 62.4 7.7 71 27-106 134-214 (316)
6 1z2n_X Inositol 1,3,4-trisphos 98.0 2.6E-05 9E-10 57.8 8.4 71 28-106 113-188 (324)
7 2q7d_A Inositol-tetrakisphosph 98.0 5.1E-05 1.7E-09 58.0 9.4 95 5-106 115-214 (346)
8 1uc8_A LYSX, lysine biosynthes 97.9 6.8E-06 2.3E-10 59.3 3.1 69 28-105 103-183 (280)
9 1iow_A DD-ligase, DDLB, D-ALA\ 97.7 4.9E-05 1.7E-09 55.6 5.9 58 28-89 111-184 (306)
10 2cqy_A Propionyl-COA carboxyla 97.6 5.3E-05 1.8E-09 47.4 3.6 61 28-91 23-99 (108)
11 2pn1_A Carbamoylphosphate synt 97.5 0.00012 4.2E-09 54.2 4.9 59 28-90 129-192 (331)
12 4dim_A Phosphoribosylglycinami 97.5 0.00019 6.4E-09 54.8 5.7 61 28-91 124-194 (403)
13 3ln6_A Glutathione biosynthesi 97.4 9.6E-05 3.3E-09 61.7 4.0 69 28-106 499-578 (750)
14 4eg0_A D-alanine--D-alanine li 97.3 0.00025 8.5E-09 52.7 4.4 61 28-89 122-192 (317)
15 3ln7_A Glutathione biosynthesi 97.3 0.00033 1.1E-08 58.6 5.4 69 28-106 504-584 (757)
16 3ax6_A Phosphoribosylaminoimid 97.2 0.0012 4.2E-08 49.9 7.5 57 28-90 115-174 (380)
17 3r5x_A D-alanine--D-alanine li 97.2 9.6E-05 3.3E-09 54.3 1.1 57 28-89 112-179 (307)
18 2ip4_A PURD, phosphoribosylami 97.1 0.00089 3E-08 51.4 5.7 61 28-91 116-186 (417)
19 3ouz_A Biotin carboxylase; str 97.1 0.00069 2.4E-08 52.6 5.1 61 28-91 134-210 (446)
20 2i87_A D-alanine-D-alanine lig 97.0 0.001 3.4E-08 50.4 5.3 69 28-106 144-226 (364)
21 2yw2_A Phosphoribosylamine--gl 96.9 0.0019 6.6E-08 49.5 6.6 61 28-91 117-191 (424)
22 2dzd_A Pyruvate carboxylase; b 96.9 0.0024 8.2E-08 49.6 7.2 61 28-91 135-211 (461)
23 2xcl_A Phosphoribosylamine--gl 96.9 0.0013 4.3E-08 50.6 5.4 60 28-90 117-190 (422)
24 1e4e_A Vancomycin/teicoplanin 96.9 0.0015 5.1E-08 49.0 5.2 57 28-89 147-211 (343)
25 3n6x_A Putative glutathionylsp 96.8 0.00092 3.2E-08 53.2 4.2 57 51-107 363-435 (474)
26 3t7a_A Inositol pyrophosphate 96.8 0.0016 5.5E-08 49.4 5.3 51 50-106 145-216 (330)
27 1kjq_A GART 2, phosphoribosylg 96.8 0.0015 5E-08 49.5 5.2 60 28-90 128-199 (391)
28 3orq_A N5-carboxyaminoimidazol 96.8 0.0025 8.7E-08 48.5 6.3 60 28-90 125-191 (377)
29 2yrx_A Phosphoribosylglycinami 96.8 0.0021 7.3E-08 49.9 5.9 60 28-90 138-211 (451)
30 3se7_A VANA; alpha-beta struct 96.8 0.00067 2.3E-08 51.1 2.8 66 28-106 147-220 (346)
31 3k5i_A Phosphoribosyl-aminoimi 96.8 0.0031 1.1E-07 48.6 6.5 60 28-89 138-205 (403)
32 1ulz_A Pyruvate carboxylase N- 96.8 0.002 6.8E-08 49.9 5.4 61 28-91 129-205 (451)
33 3vmm_A Alanine-anticapsin liga 96.7 0.0037 1.3E-07 49.4 7.0 61 28-91 154-234 (474)
34 2qk4_A Trifunctional purine bi 96.7 0.0031 1.1E-07 48.9 6.3 61 28-91 143-218 (452)
35 3aw8_A PURK, phosphoribosylami 96.7 0.0017 5.7E-08 49.0 4.6 60 28-90 111-177 (369)
36 4e4t_A Phosphoribosylaminoimid 96.7 0.001 3.5E-08 51.6 3.4 60 28-90 148-217 (419)
37 2dwc_A PH0318, 433AA long hypo 96.7 0.0022 7.5E-08 49.4 5.1 60 28-90 136-207 (433)
38 1ehi_A LMDDL2, D-alanine:D-lac 96.7 0.0019 6.6E-08 49.2 4.6 61 28-90 150-221 (377)
39 3i12_A D-alanine-D-alanine lig 96.6 0.0049 1.7E-07 46.8 6.7 57 28-89 155-225 (364)
40 4fu0_A D-alanine--D-alanine li 96.6 0.0035 1.2E-07 47.4 5.8 61 28-89 154-223 (357)
41 3lp8_A Phosphoribosylamine-gly 96.6 0.0029 9.8E-08 49.4 5.3 61 28-91 138-212 (442)
42 2vpq_A Acetyl-COA carboxylase; 96.6 0.0048 1.6E-07 47.7 6.5 52 38-91 140-205 (451)
43 3k3p_A D-alanine--D-alanine li 96.6 0.0027 9.2E-08 48.9 5.0 60 28-89 177-247 (383)
44 2z04_A Phosphoribosylaminoimid 96.5 0.0012 4.1E-08 49.7 2.8 68 28-106 107-182 (365)
45 2w70_A Biotin carboxylase; lig 96.5 0.0028 9.7E-08 49.0 4.9 61 28-91 130-207 (449)
46 2pvp_A D-alanine-D-alanine lig 96.5 0.0034 1.2E-07 47.9 5.3 60 28-90 164-232 (367)
47 3df7_A Putative ATP-grAsp supe 96.5 0.0021 7.2E-08 47.8 3.9 34 50-89 133-166 (305)
48 2io8_A Bifunctional glutathion 96.5 0.0038 1.3E-07 51.2 5.7 87 4-105 495-587 (619)
49 3mjf_A Phosphoribosylamine--gl 96.5 0.0034 1.1E-07 48.8 4.9 60 28-90 122-195 (431)
50 3q2o_A Phosphoribosylaminoimid 96.4 0.0037 1.3E-07 47.6 5.0 60 28-90 127-193 (389)
51 2r85_A PURP protein PF1517; AT 96.4 0.00067 2.3E-08 50.0 0.6 41 50-91 126-179 (334)
52 3e5n_A D-alanine-D-alanine lig 96.4 0.0033 1.1E-07 48.3 4.3 60 28-90 174-245 (386)
53 2fb9_A D-alanine:D-alanine lig 96.3 0.0033 1.1E-07 46.9 4.1 40 50-90 150-197 (322)
54 3tqt_A D-alanine--D-alanine li 96.3 0.0027 9.1E-08 48.7 3.4 60 28-89 155-226 (372)
55 3jrx_A Acetyl-COA carboxylase 96.3 0.004 1.4E-07 50.7 4.5 41 50-91 244-294 (587)
56 3lwb_A D-alanine--D-alanine li 96.3 0.0022 7.6E-08 49.0 2.8 39 50-89 188-234 (373)
57 1vkz_A Phosphoribosylamine--gl 96.2 0.0051 1.8E-07 47.3 4.5 59 28-89 121-193 (412)
58 4ffl_A PYLC; amino acid, biosy 96.1 0.0048 1.6E-07 46.4 4.1 39 50-89 125-164 (363)
59 3glk_A Acetyl-COA carboxylase 96.1 0.0042 1.4E-07 50.0 3.9 41 50-91 228-278 (540)
60 2pbz_A Hypothetical protein; N 96.1 0.0025 8.7E-08 48.1 2.4 38 50-89 125-167 (320)
61 3vot_A L-amino acid ligase, BL 95.8 0.0032 1.1E-07 48.4 1.8 59 28-91 127-204 (425)
62 1w96_A ACC, acetyl-coenzyme A 95.8 0.005 1.7E-07 49.3 2.8 41 50-91 234-284 (554)
63 3eth_A Phosphoribosylaminoimid 95.5 0.034 1.1E-06 42.4 6.6 60 28-90 94-158 (355)
64 3u9t_A MCC alpha, methylcroton 95.5 0.0019 6.4E-08 53.3 -0.6 62 28-91 156-232 (675)
65 1a9x_A Carbamoyl phosphate syn 94.9 0.023 7.8E-07 49.0 4.3 61 28-91 143-213 (1073)
66 3hbl_A Pyruvate carboxylase; T 94.8 0.017 5.8E-07 50.4 3.4 42 49-91 154-209 (1150)
67 3n6r_A Propionyl-COA carboxyla 94.8 0.0061 2.1E-07 50.3 0.4 41 50-91 152-206 (681)
68 1a9x_A Carbamoyl phosphate syn 94.7 0.02 6.7E-07 49.4 3.5 61 28-91 689-759 (1073)
69 2vob_A Trypanothione synthetas 94.5 0.038 1.3E-06 45.6 4.6 87 4-105 510-602 (652)
70 3va7_A KLLA0E08119P; carboxyla 93.4 0.033 1.1E-06 48.9 2.3 42 49-91 179-234 (1236)
71 2r7k_A 5-formaminoimidazole-4- 92.7 0.022 7.7E-07 43.5 0.2 39 50-89 150-203 (361)
72 2qf7_A Pyruvate carboxylase pr 92.7 0.051 1.7E-06 47.5 2.4 41 50-91 171-225 (1165)
73 1wr2_A Hypothetical protein PH 87.9 0.24 8.1E-06 35.1 2.0 60 28-90 36-118 (238)
74 2fp4_B Succinyl-COA ligase [GD 73.4 5 0.00017 30.9 4.8 45 28-73 19-74 (395)
75 3ufx_B Succinyl-COA synthetase 70.5 5.8 0.0002 30.5 4.6 59 28-89 19-95 (397)
76 3k1t_A Glutamate--cysteine lig 64.4 17 0.00057 28.5 6.0 55 49-104 276-347 (432)
77 2nu8_B SCS-beta, succinyl-COA 56.1 18 0.00063 27.5 5.0 44 28-73 19-67 (388)
78 3r8n_I 30S ribosomal protein S 32.8 32 0.0011 22.3 2.6 41 63-105 21-64 (127)
79 3pm7_A Uncharacterized protein 28.2 26 0.00089 21.0 1.4 8 97-104 37-44 (80)
80 4g06_A Uncharacterized protein 26.3 30 0.001 20.7 1.4 8 98-105 45-52 (79)
81 2l3a_A Uncharacterized protein 23.7 36 0.0012 20.5 1.4 8 97-104 39-46 (82)
82 3kxt_A Chromatin protein CREN7 22.7 76 0.0026 17.5 2.6 24 49-73 18-41 (56)
83 1g1s_C PSGL-1 peptide, PSGL-1; 20.8 24 0.00084 16.4 0.3 9 24-32 9-17 (28)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=99.97 E-value=1.2e-31 Score=208.39 Aligned_cols=107 Identities=26% Similarity=0.307 Sum_probs=87.7
Q ss_pred CccchhhHHHHHHHHHHHHhCCCCCCcccceeee-Cc-----------------------chHHHHHHHHh----cCCce
Q psy3860 1 MANLESKAILAYHLNRMKYFFPDEYNIFPKSWSL-PR-----------------------QWKEVISYNRE----HADET 52 (119)
Q Consensus 1 ~~~l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~l-p~-----------------------~~~~~~~~~~~----~~~~~ 52 (119)
|++|||||.|++++++++ ..++.++|+|+||.| |. |+++|++.+++ +.+++
T Consensus 71 ~~~l~rKd~L~~nl~~~~-~~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~ 149 (380)
T 3tig_A 71 ADKLCRKASLVKLIKTSP-ELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNV 149 (380)
T ss_dssp THHHHSHHHHHHHHHHCH-HHHTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCC
T ss_pred cccccccHHHHHHHHHhh-hcccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCe
Confidence 468999999999999954 557789999999999 75 34568776643 46799
Q ss_pred EEEecCCCCCCCcEEEeccCCcCcc-----CCCceEEeeccCCcccc--CCceeeEEEEEEEEe
Q psy3860 53 LILKPTRGAEGKGIKILNFIPEHEV-----MDQDASCQVYLSNVLLI--NGFKFDLRVKRYAVE 109 (119)
Q Consensus 53 wI~KP~~g~~G~GI~l~~~~~~~i~-----~~~~~vvQ~YI~~Plli--~g~KfDlR~yvlv~~ 109 (119)
||+||.++++|+||.++++.+ ++. ....+|||+||+||+|+ +|+|||+|+||||++
T Consensus 150 wI~KP~~~srG~GI~l~~~~~-~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts 212 (380)
T 3tig_A 150 WIAKSSSGAKGEGILISSDAT-ELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN 212 (380)
T ss_dssp EEEEESCC----CCBCCSCSH-HHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT
T ss_pred EEEeCCccCCCCCEEEeCCHH-HHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC
Confidence 999999999999999999988 553 35689999999999999 999999999999876
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.45 E-value=5.3e-07 Score=68.24 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceE
Q psy3860 12 YHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDAS 83 (119)
Q Consensus 12 ~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~v 83 (119)
+.+..+.+......+..|.|+. ++ ..+. +. ..+.+.|+||..|++|+|+.++++.+ ++. ....++
T Consensus 120 ~~~~~l~~~gi~~~P~~~~~~~-~~-~~~~---~~-~~g~PvVvK~~~Gs~G~GV~lv~~~~-~~~~~~~~~~~~~~~~~ 192 (309)
T 1i7n_A 120 QMVAIFKTLGGEKFPLIEQTYY-PN-HREM---LT-LPTFPVVVKIGHAHSGMGKVKVENHY-DFQDIASVVALTQTYAT 192 (309)
T ss_dssp HHHHHHHHHCTTTSCBCCCEEE-SS-GGGG---SS-CCCSSEEEEESSCSTTTTEEEECSHH-HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhCCCCCCCCCCEEee-CC-hhhh---hh-ccCCCEEEEeCCCCceeCeEEECCHH-HHHHHHHHHhccCCeEE
Confidence 3344444443345566666765 53 2222 22 24569999999999999999999987 432 245678
Q ss_pred EeeccCCccccCCceeeEEEEEE
Q psy3860 84 CQVYLSNVLLINGFKFDLRVKRY 106 (119)
Q Consensus 84 vQ~YI~~Plli~g~KfDlR~yvl 106 (119)
+|+||+ + .+|+|++|+
T Consensus 193 vQefI~-~------g~DiRv~Vv 208 (309)
T 1i7n_A 193 AEPFID-A------KYDIRVQKI 208 (309)
T ss_dssp EEECCC-E------EEEEEEEEE
T ss_pred EEeecC-C------CceEEEEEE
Confidence 999999 5 699999985
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=67.51 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceE
Q psy3860 12 YHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDAS 83 (119)
Q Consensus 12 ~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~v 83 (119)
+.+..+.+.....++..|.|+. ++. .+. +. ..+.+.|+||..|++|+|+.++++.+ ++. ....++
T Consensus 137 ~~l~~l~~~gi~~~P~~~~t~~-~~~-~~~---~~-~~g~PvVvK~~~Gs~G~GV~lve~~~-~~~~~~~~~~~~~~~~~ 209 (344)
T 2p0a_A 137 QLIKIFHSLGPEKFPLVEQTFF-PNH-KPM---VT-APHFPVVVKLGHAHAGMGKIKVENQL-DFQDITSVVAMAKTYAT 209 (344)
T ss_dssp HHHHHHHHHCTTTSCBCCCEEE-SSS-TTC---CC-CSSSSEEEEESSCCTTTTEEEECSHH-HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHCCCCCCCCCCEEec-Cch-hhh---hh-ccCCCEEEEeCCCCceeCeEEECCHH-HHHHHHHHHhccCCeEE
Confidence 3333333333334565666665 432 222 11 24569999999999999999999987 442 245677
Q ss_pred EeeccCCccccCCceeeEEEEEE
Q psy3860 84 CQVYLSNVLLINGFKFDLRVKRY 106 (119)
Q Consensus 84 vQ~YI~~Plli~g~KfDlR~yvl 106 (119)
+|+||+ + .+|+|++|+
T Consensus 210 vQefI~-~------g~DiRv~VV 225 (344)
T 2p0a_A 210 TEAFID-S------KYDIRIQKI 225 (344)
T ss_dssp EEECCC-E------EEEEEEEEE
T ss_pred EEeccC-C------CccEEEEEE
Confidence 999999 5 699999985
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.31 E-value=1.4e-06 Score=68.51 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCce
Q psy3860 11 AYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDA 82 (119)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~ 82 (119)
.+.+..+.+.....++..|.|+. +... +. + +..+.+.|+||..|++|+|+.++++.+ ++. ....+
T Consensus 231 ~~~l~ll~~~gi~~iP~t~~t~~-~~~~-~~---i-~~~g~PvVvKp~~GS~G~GV~lve~~~-~l~~ii~~~~~~~~~~ 303 (422)
T 1pk8_A 231 AQMVRLHKKLGTEEFPLIDQTFY-PNHK-EM---L-SSTTYPVVVKMGHAHSGMGKVKVDNQH-DFQDIASVVALTKTYA 303 (422)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEE-SSGG-GC---C-CCSSSSEEEEESSCCTTTTEEEECSHH-HHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHhCCCCCCCCCceEec-Cchh-hh---h-hccCCCEEEEeCCCCceeCeEEeCCHH-HHHHHHHHHhccCceE
Confidence 33444444443334566677765 5432 22 1 224569999999999999999999987 432 24567
Q ss_pred EEeeccCCccccCCceeeEEEEEE
Q psy3860 83 SCQVYLSNVLLINGFKFDLRVKRY 106 (119)
Q Consensus 83 vvQ~YI~~Plli~g~KfDlR~yvl 106 (119)
++|+||+ + .+|+|++|+
T Consensus 304 ~vQEfI~-~------g~DIRv~VV 320 (422)
T 1pk8_A 304 TAEPFID-A------KYDVRVQKI 320 (422)
T ss_dssp EEEECCC-E------EEEEEEEEE
T ss_pred EEEeecC-C------CceEEEEEE
Confidence 8999999 4 699999985
No 5
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.27 E-value=2.7e-06 Score=62.40 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=51.4
Q ss_pred cccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEec-cCCcCcc---------CCCceEEeeccCCccccCC
Q psy3860 27 IFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILN-FIPEHEV---------MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 27 ~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~-~~~~~i~---------~~~~~vvQ~YI~~Plli~g 96 (119)
..|+|+.+.+ .+++.+.+++. + .+|+||..|+.|+|+.+++ +.+ ++. ...++++|+||+.+
T Consensus 134 ~~P~t~~~~~-~~~~~~~~~~~-~-p~vvKP~~g~~g~Gv~~v~~~~~-~l~~~~~~~~~~~~~~~lvqe~i~~~----- 204 (316)
T 1gsa_A 134 LTPETLVTRN-KAQLKAFWEKH-S-DIILKPLDGMGGASIFRVKEGDP-NLGVIAETLTEHGTRYCMAQNYLPAI----- 204 (316)
T ss_dssp TSCCEEEESC-HHHHHHHHHHH-S-SEEEECSSCCTTTTCEEECTTCT-THHHHHHHHTTTTTSCEEEEECCGGG-----
T ss_pred cCCCeEEeCC-HHHHHHHHHHc-C-CEEEEECCCCCcccEEEecCChH-HHHHHHHHHHhcCCceEEEecccCCC-----
Confidence 5799988854 34554444432 2 7999999999999999998 554 431 13689999999952
Q ss_pred ceeeEEEEEE
Q psy3860 97 FKFDLRVKRY 106 (119)
Q Consensus 97 ~KfDlR~yvl 106 (119)
..+|+|++++
T Consensus 205 ~~~~~~v~~~ 214 (316)
T 1gsa_A 205 KDGDKRVLVV 214 (316)
T ss_dssp GGCEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 2588888763
No 6
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.00 E-value=2.6e-05 Score=57.80 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=52.2
Q ss_pred ccceeeeCcchHHHHHHHHhc-CCceEEEecCCCCCC---CcEEEeccCCcCcc-CCCceEEeeccCCccccCCceeeEE
Q psy3860 28 FPKSWSLPRQWKEVISYNREH-ADETLILKPTRGAEG---KGIKILNFIPEHEV-MDQDASCQVYLSNVLLINGFKFDLR 102 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~-~~~~wI~KP~~g~~G---~GI~l~~~~~~~i~-~~~~~vvQ~YI~~Plli~g~KfDlR 102 (119)
.|+|+.+.+ .++..+.+++. -..++|+||..|+.| +|+.++.+.+ ++. ...++++|+||+.+ | +|+|
T Consensus 113 ~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~-~l~~~~~~~lvqe~i~~~----g--~~~~ 184 (324)
T 1z2n_X 113 IPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQE-GIDDIHFPCLCQHYINHN----N--KIVK 184 (324)
T ss_dssp CSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGG-GGTTCCSSEEEEECCCCT----T--CEEE
T ss_pred CCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHH-HHhhcCCCEEEEEccCCC----C--cEEE
Confidence 789998854 34454444432 236899999999999 9999999876 554 24689999999852 3 7888
Q ss_pred EEEE
Q psy3860 103 VKRY 106 (119)
Q Consensus 103 ~yvl 106 (119)
++|+
T Consensus 185 v~v~ 188 (324)
T 1z2n_X 185 VFCI 188 (324)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
No 7
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.96 E-value=5.1e-05 Score=57.95 Aligned_cols=95 Identities=8% Similarity=0.024 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCcccceeeeCcc-hHHHHHHHH-hcCCceEEEecCCC--CCCCcEEEeccCCcCccC-C
Q psy3860 5 ESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQ-WKEVISYNR-EHADETLILKPTRG--AEGKGIKILNFIPEHEVM-D 79 (119)
Q Consensus 5 ~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~-~~~~~~~~~-~~~~~~wI~KP~~g--~~G~GI~l~~~~~~~i~~-~ 79 (119)
..|-.+.+.+.+..-.....-=-.|+|+.+.+. .++..+.+. ..-+.++|+||..| +.|.|+.++.+.+ ++.. .
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~-~l~~~~ 193 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQE-GLNAIQ 193 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGG-GTTC--
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHH-HHHhcC
Confidence 355566666655421111111237999999652 122333322 23467999999854 4588999998877 5543 4
Q ss_pred CceEEeeccCCccccCCceeeEEEEEE
Q psy3860 80 QDASCQVYLSNVLLINGFKFDLRVKRY 106 (119)
Q Consensus 80 ~~~vvQ~YI~~Plli~g~KfDlR~yvl 106 (119)
.++++|+||+.+ | .|+|+||+
T Consensus 194 ~~~lvQefI~~~----G--~dirv~Vv 214 (346)
T 2q7d_A 194 PPCVVQNFINHN----A--VLYKVFVV 214 (346)
T ss_dssp CCEEEEECCCCT----T--EEEEEEEE
T ss_pred CCEEEEEeeCCC----C--eEEEEEEE
Confidence 579999999853 4 79999985
No 8
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.87 E-value=6.8e-06 Score=59.29 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=48.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc---------C---CCceEEeeccCCccccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV---------M---DQDASCQVYLSNVLLIN 95 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------~---~~~~vvQ~YI~~Plli~ 95 (119)
.|+|+.+.+ .+++.+.+++ .+.++|+||..|+.|+|+.++++.+ ++. . ...+++|+||+.+
T Consensus 103 ~p~~~~~~~-~~~~~~~~~~-~~~p~vvKp~~g~~~~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~lvqe~i~~~---- 175 (280)
T 1uc8_A 103 QPKTALATD-REEALRLMEA-FGYPVVLKPVIGSWGRLLAXXXXXX-XXXXXXXXKEVLGGFQHQLFYIQEYVEKP---- 175 (280)
T ss_dssp CCCEEEESS-HHHHHHHHHH-HCSSEEEECSBCCBCSHHHHHHHHH-C------------CTTTTCEEEEECCCCS----
T ss_pred CCCeEeeCC-HHHHHHHHHH-hCCCEEEEECCCCCcccceeccccc-ccchhhhhHhhhcccCCCcEEEEeccCCC----
Confidence 688888854 3444444332 2358999999999999999998765 321 1 4689999999852
Q ss_pred CceeeEEEEE
Q psy3860 96 GFKFDLRVKR 105 (119)
Q Consensus 96 g~KfDlR~yv 105 (119)
.+|+|+++
T Consensus 176 --~~e~~v~v 183 (280)
T 1uc8_A 176 --GRDIRVFV 183 (280)
T ss_dssp --SCCEEEEE
T ss_pred --CceEEEEE
Confidence 46777765
No 9
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.75 E-value=4.9e-05 Score=55.59 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=43.1
Q ss_pred ccceeeeCcchHHHHH--------HHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVIS--------YNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~--------~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+|+.+.+. ++.+ ... ..+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+
T Consensus 111 ~p~~~~~~~~--~~~~~~~~~~~~~~~-~~~~p~vvKP~~g~~~~gv~~v~~~~-el~~~~~~~~~~~~~~lvee~i~ 184 (306)
T 1iow_A 111 VAPWVALTRA--EFEKGLSDKQLAEIS-ALGLPVIVKPSREGSSVGMSKVVAEN-ALQDALRLAFQHDEEVLIEKWLS 184 (306)
T ss_dssp BCCEEEEEHH--HHHHCCCTHHHHHHH-TTCSSEEEEETTCCTTTTCEEESSGG-GHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCeEEEchh--hhhccchhhhhhHHh-ccCCCEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhhCCCEEEEeCcC
Confidence 7888887542 3333 222 23468999999999999999999887 442 256899999998
No 10
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=5.3e-05 Score=47.39 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=42.6
Q ss_pred cccee--eeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~--~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|+++ .+. +.++..+...+ -+.++|+||..++.|+|+.++++.+ ++. ....++||+||+.+
T Consensus 23 ~p~~~~~~~~-~~~~~~~~~~~-~~~P~vvKp~~~~~~~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 23 TIPGFDGVVK-DAEEAVRIARE-IGYPVMIKASAGGGGKGMRIAWDDE-ETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp CCSCCCSCBS-SHHHHHHHHHH-HCSSEEEEETTSCCTTTCEEESSHH-HHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCCCcccccC-CHHHHHHHHHh-cCCCEEEEECCCCCCccEEEeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 46666 443 34444443322 2468999999999999999998876 332 13679999999865
No 11
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.48 E-value=0.00012 Score=54.21 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=27.2
Q ss_pred ccceeeeCcchHHHHHHHH-hcCCceEEEecCCCCCCCcEEEeccCCcCcc----CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNR-EHADETLILKPTRGAEGKGIKILNFIPEHEV----MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~-~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----~~~~~vvQ~YI~~ 90 (119)
.|+|+..+. ++.+.+. +..+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 129 ~p~~~~~~~---~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~-el~~~~~~~~~~lvee~i~G 192 (331)
T 2pn1_A 129 HARTYATMA---SFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVE-EVEQLFSKNTDLIVQELLVG 192 (331)
T ss_dssp CCCEESSHH---HHHHHHHTTSSCSCEEEEESBC------------------------CEEEEECCCS
T ss_pred CCcEEecHH---HhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHH-HHHHHHHhCCCeEEEecCCC
Confidence 577766432 3333332 234568999999999999999999887 553 2468999999983
No 12
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.46 E-value=0.00019 Score=54.78 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 124 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~lvEe~i~g~ 194 (403)
T 4dim_A 124 TARHFVVRN-ENELKNALEN-LKLPVIVKATDLQGSKGIYIAKKEE-EAIDGFNETMNLTKRDYCIVEEFIEGY 194 (403)
T ss_dssp CCCEECCCS-HHHHHHHHHT-SCSSEEEECSCC-----CEEESSHH-HHHHHHHHHHHHCSSSCCEEEECCCSE
T ss_pred CCCEEEeCC-HHHHHHHHhc-CCCCEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHhcCcCCcEEEEEccCCc
Confidence 677777643 4555554432 4568999999999999999999887 442 24679999999965
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=97.42 E-value=9.6e-05 Score=61.74 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=48.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEecc---CCcCcc--------CCCceEEeeccCCccccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNF---IPEHEV--------MDQDASCQVYLSNVLLING 96 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~---~~~~i~--------~~~~~vvQ~YI~~Plli~g 96 (119)
.|++..+.+ .++..+.+.+..+.++|+||..|++|+||.++++ .+ ++. ....++||+||+ |
T Consensus 499 vP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~e-el~~a~~~~~~~~~~vlVEefI~------G 570 (750)
T 3ln6_A 499 TPFGDEFTD-RKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLA-SYEKAIDIAFTEDSAILVEEYIE------G 570 (750)
T ss_dssp CCCCCCEET-TTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHH-HHHHHHHHHHHHCSEEEEEECCC------S
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHH-HHHHHHHHHHhhCCcEEEEeccC------C
Confidence 677777643 2333333323346799999999999999999984 33 331 256899999998 4
Q ss_pred ceeeEEEEEE
Q psy3860 97 FKFDLRVKRY 106 (119)
Q Consensus 97 ~KfDlR~yvl 106 (119)
.|+|+.|+
T Consensus 571 --~E~~v~Vv 578 (750)
T 3ln6_A 571 --TEYRFFVL 578 (750)
T ss_dssp --EEEEEEEE
T ss_pred --CEEEEEEE
Confidence 48898764
No 14
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=97.27 E-value=0.00025 Score=52.66 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=38.1
Q ss_pred ccceeeeCc--chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPR--QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~--~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+++.+.. +..++...+.+.-+.++|+||..++.|.|+.++++.+ ++. ....++||+||+
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~-el~~a~~~~~~~~~~~lvEe~i~ 192 (317)
T 4eg0_A 122 TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD-ALPAALSEAATHDKIVIVEKSIE 192 (317)
T ss_dssp CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGG-GHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhCCCeEEEEcCCC
Confidence 678877743 3333332111223568999999999999999999887 542 346799999998
No 15
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.26 E-value=0.00033 Score=58.60 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=49.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEe----ccCCcCcc--------CCCceEEeeccCCccccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKIL----NFIPEHEV--------MDQDASCQVYLSNVLLIN 95 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~----~~~~~~i~--------~~~~~vvQ~YI~~Plli~ 95 (119)
.|++..+.+ .++..+.+.+..+.++|+||..|+.|+||.++ ++.+ ++. ....++||+||+
T Consensus 504 vP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~e-el~~al~~a~~~~~~vlVEefI~------ 575 (757)
T 3ln7_A 504 VPQSVEFTS-LEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNRE-DFAKALEIAFREDKEVMVEDYLV------ 575 (757)
T ss_dssp CCCEEEESC-HHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHH-HHHHHHHHHHHHCSSEEEEECCC------
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHH-HHHHHHHHHHhcCCcEEEEEcCC------
Confidence 688887754 44554444333467899999999999999999 4444 332 246799999995
Q ss_pred CceeeEEEEEE
Q psy3860 96 GFKFDLRVKRY 106 (119)
Q Consensus 96 g~KfDlR~yvl 106 (119)
| .|+|+.|+
T Consensus 576 G--~Ei~v~Vl 584 (757)
T 3ln7_A 576 G--TEYRFFVL 584 (757)
T ss_dssp S--EEEEEEEE
T ss_pred C--cEEEEEEE
Confidence 3 48998874
No 16
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.18 E-value=0.0012 Score=49.94 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=38.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCccCC--CceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEVMD--QDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~~~--~~~vvQ~YI~~ 90 (119)
.|++..+.+ .+++ ++ .-+.++|+||..|+ .|+|+.++++.+ ++... ..+++|+||+.
T Consensus 115 ~p~~~~~~~-~~~~---~~-~~~~P~vvKp~~~~y~g~Gv~~v~~~~-el~~~~~~~~lvEe~i~~ 174 (380)
T 3ax6_A 115 VPEYKLVKD-LESD---VR-EFGFPVVQKARKGGYDGRGVFIIKNEK-DLENAIKGETYLEEFVEI 174 (380)
T ss_dssp CCCEEECSS-HHHH---HH-TTCSSEEEEESCCC-----EEEECSGG-GGGGCCCSSEEEEECCCE
T ss_pred CCCeEEeCC-HHHH---HH-hcCCCEEEEecCCCCCCCCeEEECCHH-HHHHHhcCCEEEEeccCC
Confidence 577777754 3342 22 23568999999999 999999999887 55422 68999999983
No 17
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.16 E-value=9.6e-05 Score=54.33 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=37.6
Q ss_pred ccceeeeCc--chHH-HHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPR--QWKE-VISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~--~~~~-~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+|+.+.. +... +... .+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+
T Consensus 112 ~p~~~~~~~~~~~~~~~~~~----~~~P~vvKP~~~~~s~Gv~~v~~~~-el~~~~~~~~~~~~~~lvee~i~ 179 (307)
T 3r5x_A 112 TPDWIELTKMEDLNFDELDK----LGFPLVVKPNSGGSSVGVKIVYDKD-ELISMLETVFEWDSEVVIEKYIK 179 (307)
T ss_dssp CCCEEEEESSSCCCHHHHHH----HCSSEEEEECC----CCCEEECSHH-HHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCEEEEeChhhhhHHHHHh----cCCCEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCCEEEECCcC
Confidence 688887743 2221 3322 2468999999999999999998877 442 256899999998
No 18
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.06 E-value=0.00089 Score=51.39 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=43.5
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------C---CCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------M---DQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~---~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. . ...+++|+||+.+
T Consensus 116 ~p~~~~~~~-~~~~~~~~~~-~~~P~vvKp~~~~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~lvEe~i~g~ 186 (417)
T 2ip4_A 116 TARYRVFRE-PLEALAYLEE-VGVPVVVKDSGLAAGKGVTVAFDLH-QAKQAVANILNRAEGGEVVVEEYLEGE 186 (417)
T ss_dssp BCCEEEESS-HHHHHHHHHH-HCSSEEEECTTSCSSTTCEEESCHH-HHHHHHHHHTTSSSCCCEEEEECCCSC
T ss_pred CCCeeeeCC-HHHHHHHHHH-cCCCEEEEECCCCCCCCEEEeCCHH-HHHHHHHHHHhhccCCeEEEEECccCc
Confidence 577777643 4444444332 2468999999999999999998876 432 1 2689999999843
No 19
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.06 E-value=0.00069 Score=52.57 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.0
Q ss_pred cccee--eeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~--~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|+++ .+ .+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 134 ~p~~~~~~~-~~~~e~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 210 (446)
T 3ouz_A 134 VIPGSDGAL-AGAEAAKKLAKE-IGYPVILKAAAGGGGRGMRVVENEK-DLEKAYWSAESEAMTAFGDGTMYMEKYIQNP 210 (446)
T ss_dssp BCSBCSSSC-CSHHHHHHHHHH-HCSSEEEEETTCCTTCSEEEECSGG-GHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred cCCCcccCC-CCHHHHHHHHHH-hCCCEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 55665 33 334455444332 2468999999999999999999988 542 15689999999976
No 20
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=96.98 E-value=0.001 Score=50.41 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=47.8
Q ss_pred ccceeeeCcchH------HHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCCccc
Q psy3860 28 FPKSWSLPRQWK------EVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSNVLL 93 (119)
Q Consensus 28 ~P~T~~lp~~~~------~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~Pll 93 (119)
.|+++.+..... ++.+... .-+.++|+||..|+.|.|+.++++.+ ++. ....++||+||+
T Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~-el~~a~~~~~~~~~~~lvEe~I~---- 217 (364)
T 2i87_A 144 QLPYISFLRSEYEKYEHNILKLVND-KLNYPVFVKPANLGSSVGISKCNNEA-ELKEGIKEAFQFDRKLVIEQGVN---- 217 (364)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHHHH-HCCSSEEEEESSCSSCTTCEEESSHH-HHHHHHHHHHTTCSEEEEEECCC----
T ss_pred CCCEEEEechhhcccchhHHHHHHH-hcCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhcCCeEEEEeCcc----
Confidence 688888753210 2222222 23568999999999999999999877 442 246899999998
Q ss_pred cCCceeeEEEEEE
Q psy3860 94 INGFKFDLRVKRY 106 (119)
Q Consensus 94 i~g~KfDlR~yvl 106 (119)
| .++++-++
T Consensus 218 --G--~E~~v~vl 226 (364)
T 2i87_A 218 --A--REIEVAVL 226 (364)
T ss_dssp --C--EEEEEEEE
T ss_pred --C--eEEEEEEE
Confidence 3 36666665
No 21
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=96.93 E-value=0.0019 Score=49.52 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=43.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------C-------CCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------M-------DQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~-------~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+.+++ .+.++|+||..|+.|+|+.++++.+ ++. . ...+++|+||+.+
T Consensus 117 ~p~~~~~~~-~~~~~~~~~~-~~~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~g~~~~~~lvEe~i~g~ 191 (424)
T 2yw2_A 117 TARYEVFTD-FEKAKEYVEK-VGAPIVVKADGLAAGKGAVVCETVE-KAIETLDRFLNKKIFGKSSERVVIEEFLEGE 191 (424)
T ss_dssp BCCEEEESC-HHHHHHHHHH-HCSSEEEEESSCCTTCSEEEESSHH-HHHHHHHHHHTSCTTGGGGSSEEEEECCCSE
T ss_pred CCCeEEECC-HHHHHHHHHH-cCCcEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhhhhccCCCCeEEEEECCCCc
Confidence 577777743 3444444432 2468999999999999999998876 432 1 2589999999844
No 22
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=96.93 E-value=0.0024 Score=49.65 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=42.7
Q ss_pred cccee--eeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~--~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|+++ .+. +.++..+..++ .+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 135 ~p~~~~~~~~-~~~~~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 135 VIPGSDGPVD-GLEDVVAFAEA-HGYPIIIKAALGGGGRGMRIVRSKS-EVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp BCCBCSSCCS-SHHHHHHHHHH-HCSCEEEEESTTCSSSSEEEECCGG-GHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred CCCCcccCcC-CHHHHHHHHHh-cCCcEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 45554 333 34444444332 2468999999999999999999887 442 14689999999965
No 23
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=96.92 E-value=0.0013 Score=50.57 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=43.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------C-------CCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------M-------DQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------~-------~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .++..+.+++ -+.++|+||..++.|+|+.++++.+ ++. . ...+++|+||+.
T Consensus 117 ~p~~~~~~~-~~~~~~~~~~-~~~P~vvKp~~~~~g~Gv~~v~~~~-el~~~~~~~~~~~~~g~~~~~~lvEe~i~g 190 (422)
T 2xcl_A 117 TAEYETFTS-FDEAKAYVQE-KGAPIVIKADGLAAGKGVTVAMTEE-EAIACLHDFLEDEKFGDASASVVIEEYLSG 190 (422)
T ss_dssp BCCEEEESC-HHHHHHHHHH-HCSSEEEEESSCGGGTCEEEESSHH-HHHHHHHHHHTSCTTGGGGSSEEEEECCCS
T ss_pred CCCeEEECC-HHHHHHHHHh-cCCCEEEEeCCCCCCCcEEEECCHH-HHHHHHHHHHhhhhccCCCCeEEEEECCcC
Confidence 577777753 4455444432 2468999999999999999998876 332 1 368999999984
No 24
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=96.86 E-value=0.0015 Score=49.00 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=41.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|++..+... ++..+ +.-+.++|+||..++.|.|+.++++.+ ++. ....++||+||+
T Consensus 147 ~p~~~~~~~~-~~~~~---~~~~~PvvvKP~~~~~s~Gv~~v~~~~-el~~a~~~~~~~~~~~lvEe~I~ 211 (343)
T 1e4e_A 147 TPAFWVINKD-DRPVA---ATFTYPVFVKPARSGSSFGVKKVNSAD-ELDYAIESARQYDSKILIEQAVS 211 (343)
T ss_dssp CCCEEEECTT-CCCCG---GGSCSCEEEEESSCCTTTTCEEECSGG-GHHHHHHHHTTTCSSEEEEECCC
T ss_pred cCCEEEEech-hhhhh---hccCCCEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCcEEEEeCcC
Confidence 6777777432 11111 223568999999999999999999887 542 346899999997
No 25
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.85 E-value=0.00092 Score=53.21 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=37.0
Q ss_pred ceEEEecCCCCCCCcEEEeccCCc-Cc--------cCCCceEEeeccCC---ccccC----CceeeEEEEEEE
Q psy3860 51 ETLILKPTRGAEGKGIKILNFIPE-HE--------VMDQDASCQVYLSN---VLLIN----GFKFDLRVKRYA 107 (119)
Q Consensus 51 ~~wI~KP~~g~~G~GI~l~~~~~~-~i--------~~~~~~vvQ~YI~~---Plli~----g~KfDlR~yvlv 107 (119)
.-|++||..|+.|.|+.+=...++ +. .....||+|++|+- |...+ .+++|+|.|++.
T Consensus 363 ~~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~ 435 (474)
T 3n6x_A 363 AELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLS 435 (474)
T ss_dssp GGEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEE
T ss_pred hheEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEc
Confidence 479999999999999988665541 11 13456999999983 22234 478999999974
No 26
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=96.84 E-value=0.0016 Score=49.43 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=37.5
Q ss_pred CceEEEecCCCC-----------CCCcE-EEeccCC---c------CccCCCceEEeeccCCccccCCceeeEEEEEE
Q psy3860 50 DETLILKPTRGA-----------EGKGI-KILNFIP---E------HEVMDQDASCQVYLSNVLLINGFKFDLRVKRY 106 (119)
Q Consensus 50 ~~~wI~KP~~g~-----------~G~GI-~l~~~~~---~------~i~~~~~~vvQ~YI~~Plli~g~KfDlR~yvl 106 (119)
..++|.||..|+ +|.|. ++++... . .+.....+++|+||.. +| -|+|+||+
T Consensus 145 ~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 145 QKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp ESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred cCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 368999999997 88888 5554332 0 2235679999999995 45 79999985
No 27
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=96.84 E-value=0.0015 Score=49.49 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=40.8
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .+++.+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 128 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~ 199 (391)
T 1kjq_A 128 TSTYRFADS-ESLFREAVAD-IGYPCIVKPVMSSSGKGQTFIRSAE-QLAQAWKYAQQGGRAGAGRVIVEGVVKF 199 (391)
T ss_dssp BCCEEEESS-HHHHHHHHHH-HCSSEEEEESCC---CCCEEECSGG-GHHHHHHHHHHHSGGGCCCEEEEECCCC
T ss_pred CCCeeeeCC-HHHHHHHHHh-cCCCEEEEeCCCCCCCCeEEECCHH-HHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 577777653 3444444332 2468999999999999999999877 442 1468999999983
No 28
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=96.81 E-value=0.0025 Score=48.53 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=43.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .+++.+..++ -+.++|+||..|. .|+|+.++++.+ ++. ....+++|+||+.
T Consensus 125 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~gg~~g~Gv~~v~~~~-el~~a~~~~~~~~~ivEe~i~g 191 (377)
T 3orq_A 125 VVPFISVKE-STDIDKAIET-LGYPFIVKTRFGGYDGKGQVLINNEK-DLQEGFKLIETSECVAEKYLNI 191 (377)
T ss_dssp BCCEEEECS-STHHHHHHHH-TCSSEEEEESSSCCTTTTEEEECSTT-SHHHHHHHHTTSCEEEEECCCE
T ss_pred CCCeEEECC-HHHHHHHHHH-cCCCEEEEeCCCCCCCCCeEEECCHH-HHHHHHHhcCCCcEEEEccCCC
Confidence 567777653 3344443332 3568999999886 899999999988 553 2478999999994
No 29
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=96.80 E-value=0.0021 Score=49.90 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=39.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .++..+.+++ -+.++|+||..++.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 138 ~p~~~~~~~-~~~~~~~~~~-~~~PvVvKp~~~~gg~Gv~~v~~~~-el~~~~~~~~~~~~~g~~~~~~lvEe~i~G 211 (451)
T 2yrx_A 138 TADHAAFTS-YEEAKAYIEQ-KGAPIVIKADGLAAGKGVTVAQTVE-EALAAAKAALVDGQFGTAGSQVVIEEYLEG 211 (451)
T ss_dssp BCCEEEESC-HHHHHHHHHH-HCSSEEEEECC----CCEEEESSHH-HHHHHHHHHHHHSCCBTTBCCEEEEECCCS
T ss_pred CCCeEEECC-HHHHHHHHHh-cCCcEEEEeCCCCCCCcEEEECCHH-HHHHHHHHHHhccccCCCCCeEEEEECCcC
Confidence 578777743 4444444332 2468999999999999999998876 332 1368999999984
No 30
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=96.77 E-value=0.00067 Score=51.07 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=45.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCCccccCCcee
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSNVLLINGFKF 99 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~Plli~g~Kf 99 (119)
.|+++.+.... ....+.-+.++|+||..++.|.|+.++++.+ ++. ....++||+||+ |+
T Consensus 147 ~p~~~~~~~~~----~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~-el~~a~~~~~~~~~~vlvEe~I~------G~-- 213 (346)
T 3se7_A 147 TPNFWTVTADE----KIPTDQLTYPVFVKPARSGSSFGVSKVAREE-DLQGAVEAAREYDSKVLIEEAVI------GT-- 213 (346)
T ss_dssp CCCEEEEETTS----CCCTTTCCSSEEEEESSCCTTTTCEEECSHH-HHHHHHHHHTTTCSEEEEEECCC------SE--
T ss_pred cCCEEEEcCcH----HHHHHhcCCCEEEEeCCCCCCcCEEEECCHH-HHHHHHHHHHhCCCcEEEEeCcC------CE--
Confidence 67777774321 1111223568999999999999999998887 442 356899999998 33
Q ss_pred eEEEEEE
Q psy3860 100 DLRVKRY 106 (119)
Q Consensus 100 DlR~yvl 106 (119)
++++.++
T Consensus 214 E~~v~vl 220 (346)
T 3se7_A 214 EIGCAVM 220 (346)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5666555
No 31
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=96.77 E-value=0.0031 Score=48.56 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=43.9
Q ss_pred ccceeeeC-cchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc------CCCceEEeeccC
Q psy3860 28 FPKSWSLP-RQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp-~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~ 89 (119)
.|+++.+. .+.+++.+...+ -+.++|+||..|+ .|+|+.++++.+ ++. ....+++|+||+
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~-~g~P~VvKp~~gg~~g~Gv~~v~~~~-el~~a~~~~~~~~~lvEe~i~ 205 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQ-LGYPLMLKSKTMAYDGRGNFRVNSQD-DIPEALEALKDRPLYAEKWAY 205 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHH-HCSSEEEEESSSCCTTTTEEEECSTT-SHHHHHHHTTTSCEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHH-hCCCEEEEeCCCCcCCCCEEEECCHH-HHHHHHHhcCCCcEEEecCCC
Confidence 67777775 134555544332 2468999998876 999999999988 553 356899999998
No 32
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.75 E-value=0.002 Score=49.93 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=42.6
Q ss_pred cccee--eeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSW--SLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~--~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|+++ .+. +.++..+..++ .+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 129 ~p~~~~~~~~-~~~~~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 129 VVPGSDGVLK-SLEEAKALARE-IGYPVLLKATAGGGGRGIRICRNEE-ELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp BCCBCSSSCC-CHHHHHHHHHH-HCSSEEEEECSSSSCCSCEEESSHH-HHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred CCCCcccccC-CHHHHHHHHHH-cCCCEEEEECCCCCCccEEEeCCHH-HHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 45655 443 23444444332 2468999999999999999998876 432 14689999999965
No 33
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=96.74 E-value=0.0037 Score=49.36 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=45.7
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------------CCCceEEeec
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------------MDQDASCQVY 87 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------------~~~~~vvQ~Y 87 (119)
.|+++.+.+ .++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+|
T Consensus 154 vp~~~~v~s-~ee~~~~~~~-lg~PvVVKP~~g~gg~Gv~iv~~~e-el~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~ 230 (474)
T 3vmm_A 154 SIKNKRVTT-LEDFRAALEE-IGTPLILKPTYLASSIGVTLITDTE-TAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEF 230 (474)
T ss_dssp CCCEEEECS-HHHHHHHHHH-SCSSEEEEESSCCTTTTCEEECCTT-SHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEEC
T ss_pred CCCeEEECC-HHHHHHHHHH-cCCCEEEEECCCCcCceEEEECCHH-HHHHHHHHHHHHHhhccccccccCCCeEEEEeC
Confidence 677777754 4455544432 4578999999999999999999887 442 1368999999
Q ss_pred cCCc
Q psy3860 88 LSNV 91 (119)
Q Consensus 88 I~~P 91 (119)
|+.+
T Consensus 231 I~G~ 234 (474)
T 3vmm_A 231 LQGE 234 (474)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 9976
No 34
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=96.72 E-value=0.0031 Score=48.91 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=40.3
Q ss_pred ccceeeeCcchHHHHHHHHhcCCce-EEEecCCCCCCCcEEEeccCCcCcc-------C-------CCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADET-LILKPTRGAEGKGIKILNFIPEHEV-------M-------DQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~-wI~KP~~g~~G~GI~l~~~~~~~i~-------~-------~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+.+++ -+.+ +|+||..++.|+|+.++++.+ ++. . ...+++|+||+.+
T Consensus 143 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvvKp~~~~gg~Gv~~v~~~~-el~~~~~~~~~~~~~g~~~~~~lvEe~i~G~ 218 (452)
T 2qk4_A 143 TAQWKAFTK-PEEACSFILS-ADFPALVVKASGLAAGKGVIVAKSKE-EACKAVQEIMQEKAFGAAGETIVIEELLDGE 218 (452)
T ss_dssp BCCEEEESS-HHHHHHHHHH-CSSCEEEEEESBC---CCEEECSSHH-HHHHHHHHHTTC-------CCEEEEECCCSE
T ss_pred CCCeEEECC-HHHHHHHHHh-CCCCeEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhhhhccCCCCeEEEEECCCCC
Confidence 577777643 4455444432 3467 999999999999999998876 332 1 3579999999843
No 35
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=96.71 E-value=0.0017 Score=49.02 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=39.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .++..+..++ -+.++|+||..++ .|+|+.++++.+ ++. ....+++|+||+.
T Consensus 111 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~~~~~g~Gv~~v~~~~-el~~~~~~~~~~~~lvEe~i~~ 177 (369)
T 3aw8_A 111 TPPFHPVDG-PEDLEEGLKR-VGLPALLKTRRGGYDGKGQALVRTEE-EALEALKALGGRGLILEGFVPF 177 (369)
T ss_dssp CCCEEEESS-HHHHHHHHTT-TCSSEEEEECCC------EEEECSHH-HHHHHHTTTCSSSEEEEECCCC
T ss_pred CCCceeeCC-HHHHHHHHHH-cCCCEEEEEcCCCCCcceEEEECCHH-HHHHHHHhcCCCcEEEEEcCCC
Confidence 577777754 4555554432 3568999999999 999999998876 432 2468999999983
No 36
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=96.69 E-value=0.001 Score=51.65 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=43.3
Q ss_pred ccceeeeCcchHHHHHHHHhc---CCceEEEecC-CCCCCCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREH---ADETLILKPT-RGAEGKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~---~~~~wI~KP~-~g~~G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+..++. - .++|+||. .|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 148 ~p~~~~v~~-~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~-el~~a~~~~~~~~~lvEe~i~~ 217 (419)
T 4e4t_A 148 VAPHVVIES-AAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAR-EARDAHAALGGVPCVLEKRLPL 217 (419)
T ss_dssp BCCEEEECS-HHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHH-HHHHHHHHTTTCCEEEEECCCE
T ss_pred CCCeEEECC-HHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHH-HHHHHHHhcCCCcEEEeecCCC
Confidence 567776643 44554433320 3 68999999 899999999999887 442 3468999999984
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=96.66 E-value=0.0022 Score=49.41 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=36.9
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 136 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~ 207 (433)
T 2dwc_A 136 TSRYMYATT-LDELYEACEK-IGYPCHTKAIMSSSGKGSYFVKGPE-DIPKAWEEAKTKARGSAEKIIVEEHIDF 207 (433)
T ss_dssp CCCEEEESS-HHHHHHHHHH-HCSSEEEEECCC------EEECSGG-GHHHHHHC---------CCEEEEECCCC
T ss_pred CCCeeEeCC-HHHHHHHHHh-cCCCEEEEECCCcCCCCeEEECCHH-HHHHHHHHHHhhcccCCCCEEEEccCCC
Confidence 577777653 3444444332 2468999999999999999999887 442 1367999999983
No 38
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=96.66 E-value=0.0019 Score=49.25 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=42.2
Q ss_pred ccceeeeCcchH---HHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWK---EVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~---~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|+++.+....+ .+.+... .-+.++|+||..++.|.|+.++++.+ ++. ....++||+||+.
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~-~~g~PvvVKP~~~~~s~Gv~~v~~~~-el~~a~~~~~~~~~~vlvEe~I~G 221 (377)
T 1ehi_A 150 NTKYIVVDPESANNWSWDKIVA-ELGNIVFVKAANQGSSVGISRVTNAE-EYTEALSDSFQYDYKVLIEEAVNG 221 (377)
T ss_dssp CCCEEEECTTGGGGCCHHHHHH-HHCSCEEEEESSCCTTTTEEEECSHH-HHHHHHHHHTTTCSCEEEEECCCC
T ss_pred CCCEEEEeccccchHHHHHHHH-hcCCCEEEEeCCCCCCcCEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCC
Confidence 678887753211 1222211 12468999999999999999999887 442 2468999999984
No 39
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=96.62 E-value=0.0049 Score=46.76 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred ccceeeeCc------chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPR------QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~------~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|++..+.. +..++... -+.++++||..+..|.|+.++++.+ ++. ....++||+||+
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~----lg~PvvVKP~~ggss~Gv~~v~~~~-el~~a~~~a~~~~~~vlVEe~I~ 225 (364)
T 3i12_A 155 IAPFITLTRTNRHAFSFAEVESR----LGLPLFVKPANQGSSVGVSKVANEA-QYQQAVALAFEFDHKVVVEQGIK 225 (364)
T ss_dssp BCCEEEEETTTGGGCCHHHHHHH----HCSSEEEEETTCCTTTTCEEESSHH-HHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCEEEEEccccchhhHHHHHHh----cCCCEEEEECCCCCCcCeEEeCCHH-HHHHHHHHHHhcCCcEEEEcCcC
Confidence 567777643 22233322 2468999999999999999998887 442 246899999998
No 40
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=96.61 E-value=0.0035 Score=47.38 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=42.6
Q ss_pred ccceeeeCc-chHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPR-QWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~-~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|++..+.. +...-.....+.-+.++|+||..|..|+|+.++++.+ ++. ....+++|+||+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~-el~~~~~~a~~~~~~vlvE~~i~ 223 (357)
T 4fu0_A 154 VPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQ-ELDAAIELAFEHDTEVIVEETIN 223 (357)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHH-HHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHH-hHHHHHHHHhccCCeEEEEEecC
Confidence 677777643 2111122222235688999999999999999999887 542 356789999996
No 41
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=96.60 E-value=0.0029 Score=49.41 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=45.0
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..++.++ .+.++|+||..++.|+|+.++++.+ ++. ....+++|+||+-+
T Consensus 138 ~p~~~~~~~-~~ea~~~~~~-~g~PvVvKp~~~~gg~GV~iv~~~e-el~~a~~~~~~~~~~g~~~~~vlvEe~i~G~ 212 (442)
T 3lp8_A 138 TAKYGYFVD-TNSAYKFIDK-HKLPLVVKADGLAQGKGTVICHTHE-EAYNAVDAMLVHHKFGEAGCAIIIEEFLEGK 212 (442)
T ss_dssp BCCEEEESS-HHHHHHHHHH-SCSSEEEEESSCCTTTSEEEESSHH-HHHHHHHHHHTSCTTGGGGSSEEEEECCCSE
T ss_pred CCCEEEECC-HHHHHHHHHH-cCCcEEEeECCCCCCCeEEEeCCHH-HHHHHHHHHHhhcccCCCCCeEEEEEeecCc
Confidence 678877753 4555555443 3578999999999999999999876 331 12589999999843
No 42
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.58 E-value=0.0048 Score=47.75 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=38.6
Q ss_pred hHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 38 WKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 38 ~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 140 ~~~~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 2vpq_A 140 VSEAKKIAKK-IGYPVIIKATAGGGGKGIRVARDEK-ELETGFRMTEQEAQTAFGNGGLYMEKFIENF 205 (451)
T ss_dssp HHHHHHHHHH-HCSSEEEEETTCCTTCSEEEESSHH-HHHHHHHHHHHHHHHHHSCCCEEEEECCCSE
T ss_pred HHHHHHHHHh-cCCcEEEEECCCCCCCCEEEeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEEecCCC
Confidence 4455444332 2468999999999999999998876 432 14689999999965
No 43
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=96.57 E-value=0.0027 Score=48.89 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=37.0
Q ss_pred ccceeeeCcc--h-HHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQ--W-KEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~--~-~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+++.+... . +++.+.. +.-+.++|+||..+..|.||.++++.+ ++. ....++||+||+
T Consensus 177 vp~~~~~~~~~~~~~~~~~~~-~~lg~PvvVKP~~ggss~GV~~v~~~~-el~~al~~a~~~~~~vlVEe~I~ 247 (383)
T 3k3p_A 177 QVAYVALIEGEPLESKLAEVE-EKLIYPVFVKPANMGSSVGISKAENRT-DLKQAIALALKYDSRVLIEQGVD 247 (383)
T ss_dssp BCCEEEEETTSCHHHHHHHHH-HHCCSSEEEEECC------CEEESSHH-HHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCEEEEeCccchhHHHHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhCCCeEEEEcCCC
Confidence 6777777532 1 2233322 234578999999999999999999887 542 246799999998
No 44
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.54 E-value=0.0012 Score=49.66 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=24.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCC-CCCcEEEeccCCcCcc-------CCCceEEeeccCCccccCCcee
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGA-EGKGIKILNFIPEHEV-------MDQDASCQVYLSNVLLINGFKF 99 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~-~G~GI~l~~~~~~~i~-------~~~~~vvQ~YI~~Plli~g~Kf 99 (119)
.|++..+. .++..+..++ -+.++|+||..|+ .|+|+.++++.+ ++. ....+++|+||+. | -
T Consensus 107 ~p~~~~~~--~~~~~~~~~~-~~~P~vvKp~~~~~~g~Gv~~v~~~~-el~~~~~~~~~~~~~lvEe~i~~-----g--~ 175 (365)
T 2z04_A 107 VPEFLVIK--RDEIIDALKS-FKLPVVIKAEKLGYDGKGQYRIKKLE-DANQVVKNHDKEESFIIEEFVKF-----E--A 175 (365)
T ss_dssp CCCEEEC-----------------CEEEECC-------------------------------CEEEECCCC-----S--E
T ss_pred CCCEEEEc--HHHHHHHHHh-cCCCEEEEEcCCCcCCCCeEEECCHH-HHHHHHHHhccCCCEEEEccCCC-----C--E
Confidence 67776654 2333333221 2468999999999 999999998887 443 2457999999983 2 2
Q ss_pred eEEEEEE
Q psy3860 100 DLRVKRY 106 (119)
Q Consensus 100 DlR~yvl 106 (119)
++++.++
T Consensus 176 e~sv~~~ 182 (365)
T 2z04_A 176 EISCIGV 182 (365)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5666554
No 45
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.54 E-value=0.0028 Score=49.00 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred cccee--eeCcchHHH-HHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCC
Q psy3860 28 FPKSW--SLPRQWKEV-ISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~--~lp~~~~~~-~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~ 90 (119)
.|+++ .+.+ .++. .+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 130 ~p~~~~~~~~~-~~~~~~~~~~~-~g~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 206 (449)
T 2w70_A 130 CVPGSDGPLGD-DMDKNRAIAKR-IGYPVIIKASGGGGGRGMRVVRGDA-ELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206 (449)
T ss_dssp BCSBCSSCCCS-CHHHHHHHHHH-HCSSEEEEETTCCTTTTCEEECSHH-HHHHHHHHHHHHHHHHHSCCCEEEEECCSS
T ss_pred cCCCcccccCC-HHHHHHHHHHH-hCCcEEEEECCCCCCCCEEEeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEeccCC
Confidence 45555 4432 3344 443332 2468999999999999999998876 432 1468999999996
Q ss_pred c
Q psy3860 91 V 91 (119)
Q Consensus 91 P 91 (119)
+
T Consensus 207 ~ 207 (449)
T 2w70_A 207 P 207 (449)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=96.53 E-value=0.0034 Score=47.90 Aligned_cols=60 Identities=8% Similarity=0.149 Sum_probs=43.0
Q ss_pred ccceeeeCcch-HHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQW-KEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~-~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|++..+.... .+..+ . +.-+.++|+||..++.|.|+.++++.+ ++. ....++||+||+.
T Consensus 164 ~p~~~~~~~~~~~~~~~-~-~~lg~PvvVKP~~g~ss~Gv~~v~~~~-el~~a~~~~~~~~~~vlVEe~I~G 232 (367)
T 2pvp_A 164 TLDYVLLNEKNRANALD-L-MNFNFPFIVKPSNAGSSLGVNVVKEEK-ELIYALDSAFEYSKEVLIEPFIQG 232 (367)
T ss_dssp CCCCEEECTTTGGGHHH-H-CCSCSCEEEEESSCCTTTTCEEESSTT-SHHHHHHHHTTTCSCEEEEECCTT
T ss_pred CCCEEEEeCCchHHHHH-H-hccCCCEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHhcCCcEEEEeCCCC
Confidence 57777774321 13333 2 234568999999999999999999887 542 2468999999984
No 47
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.0021 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=26.0
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCccCCCceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~~~~vvQ~YI~ 89 (119)
+.++|+||..|+.|+|+.++++ ....+++|+||+
T Consensus 133 ~~P~vvKP~~g~gs~Gv~~v~~------~~~~~lvEe~I~ 166 (305)
T 3df7_A 133 DCKFIIKPRTACAGEGIGFSDE------VPDGHIAQEFIE 166 (305)
T ss_dssp SSSEEEEESSCC----CBCCSS------CCTTEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCEEEEec------CCCCEEEEeccC
Confidence 5679999999999999999987 245899999998
No 48
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=96.50 E-value=0.0038 Score=51.16 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=54.0
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------
Q psy3860 4 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------ 77 (119)
Q Consensus 4 l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------ 77 (119)
+.+|..|+-....+ |. -+++++|+.-+. . . . +. .-|++||..|..|.||.+.+...+.+.
T Consensus 495 lsNKailalLw~l~----p~-hp~LLpT~f~~~-~-~-l---~~---~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~y 560 (619)
T 2io8_A 495 PGNKAILPILWSLF----PH-HRYLLDTDFTVN-D-E-L---VK---TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKF 560 (619)
T ss_dssp TTSTTHHHHHHHHS----TT-CTTCCCEESSCC-H-H-H---HH---HCEEEEETTCCTTTTCEEECTTSCEEEECCCTT
T ss_pred hhhHHHHHHHHHhC----CC-CCCCCCeeecCC-c-c-c---cc---CCEEEccCCCCCCCCEEEEeCCChhHhhccccc
Confidence 55666666544443 32 346777774333 2 1 1 11 349999999999999999986331221
Q ss_pred CCCceEEeeccCCccccCCceeeEEEEE
Q psy3860 78 MDQDASCQVYLSNVLLINGFKFDLRVKR 105 (119)
Q Consensus 78 ~~~~~vvQ~YI~~Plli~g~KfDlR~yv 105 (119)
..+.+|.|+|++-| ..++.-.=+.+|+
T Consensus 561 ~~~~~IyQe~~~lp-~~d~~~~~iG~f~ 587 (619)
T 2io8_A 561 AEQKNIYQQLWCLP-KVDGKYIQVCTFT 587 (619)
T ss_dssp TTSCEEEEECCCCC-EETTEEEEEEEEE
T ss_pred cCCCeEEEEecCCC-CcCCcceEEEEEE
Confidence 24689999999976 2333333366666
No 49
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=96.45 E-value=0.0034 Score=48.82 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=44.0
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .++..++.++ .+.++++||..++.|+|+.++++.+ ++. ....+++|+||+.
T Consensus 122 tp~~~~~~~-~~ea~~~~~~-~g~PvVvKp~~~~gg~GV~iv~~~~-el~~a~~~~~~~~~~g~~~~~vlvEe~i~G 195 (431)
T 3mjf_A 122 SAEYQNFTD-VEAALAYVRQ-KGAPIVIKADGLAAGKGVIVAMTQE-EAETAVNDMLAGNAFGDAGHRIVVEEFLDG 195 (431)
T ss_dssp BCCEEEESC-HHHHHHHHHH-HCSSEEEEESSSCTTCSEEEECSHH-HHHHHHHHHHTTHHHHCCCCCEEEEECCCS
T ss_pred CCCeEeeCC-HHHHHHHHHH-cCCeEEEEECCCCCCCcEEEeCCHH-HHHHHHHHHHhhccccCCCCeEEEEEeeCC
Confidence 577777753 4555554433 2468999999999999999999877 431 1358999999983
No 50
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=96.44 E-value=0.0037 Score=47.58 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=43.3
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCC-CCcEEEeccCCcCcc------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAE-GKGIKILNFIPEHEV------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~-G~GI~l~~~~~~~i~------~~~~~vvQ~YI~~ 90 (119)
.|+++.+.+ .+++.+..++ -+.++|+||..+.. |+|+.++++.+ ++. ....+++|+||+.
T Consensus 127 ~p~~~~~~~-~~~~~~~~~~-~g~P~vvKp~~~~~~g~Gv~~v~~~~-el~~~~~~~~~~~~lvEe~i~g 193 (389)
T 3q2o_A 127 VATYRLVQN-QEQLTEAIAE-LSYPSVLKTTTGGYDGKGQVVLRSEA-DVDEARKLANAAECILEKWVPF 193 (389)
T ss_dssp CCCEEEESS-HHHHHHHHHH-HCSSEEEEESSCCSSSCCEEEESSGG-GHHHHHHHHHHSCEEEEECCCC
T ss_pred CCCeEEECC-HHHHHHHHHh-cCCCEEEEeCCCCCCCCCeEEECCHH-HHHHHHHhcCCCCEEEEecccC
Confidence 677777754 3444444332 24689999998864 89999999888 553 2468999999984
No 51
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=96.40 E-value=0.00067 Score=50.03 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=29.4
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc-------------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV-------------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------------~~~~~vvQ~YI~~P 91 (119)
..++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 126 ~~P~vvKP~~g~~s~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~lvee~i~G~ 179 (334)
T 2r85_A 126 EKPVIVKPHGAKGGKGYFLAKDPE-DFWRKAEKFLGIKRKEDLKNIQIQEYVLGV 179 (334)
T ss_dssp CSCEEEEECC----TTCEEESSHH-HHHHHHHHHHCCCSGGGCCSEEEEECCCCE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhhcccCCCCcEEEEeccCCc
Confidence 368999999999999999998876 331 12689999999954
No 52
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=96.36 E-value=0.0033 Score=48.34 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=42.0
Q ss_pred ccceeeeCcchH----HHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWK----EVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~----~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
.|+++.+... + ++.+... .-+.++|+||..++.|.||.++++.+ ++. ....++||+||+-
T Consensus 174 ~p~~~~~~~~-~~~~~~~~~~~~-~lg~PvvVKP~~ggss~Gv~~v~~~~-el~~a~~~a~~~~~~vlVEe~I~G 245 (386)
T 3e5n_A 174 VAPFVCFDRH-TAAHADVDTLIA-QLGLPLFVKPANQGSSVGVSQVRTAD-AFAAALALALAYDHKVLVEAAVAG 245 (386)
T ss_dssp BCCEEEEEHH-HHTTCCHHHHHH-HHCSSEEEEESBSCSSTTCEEECSGG-GHHHHHHHHTTTCSEEEEEECCCS
T ss_pred CCCEEEEeCc-ccchhhHHHHHH-hcCCCEEEEECCCCcCCCEEEECCHH-HHHHHHHHHHhCCCcEEEEcCCCC
Confidence 6777777431 1 2222221 12468999999999999999999887 542 3467999999983
No 53
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=96.35 E-value=0.0033 Score=46.88 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=33.4
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccCC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLSN 90 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~~ 90 (119)
+.++|+||..|+.|.|+.++++.+ ++. ....++||+||+.
T Consensus 150 g~PvvvKP~~g~~s~Gv~~v~~~~-el~~a~~~~~~~~~~vlvEe~I~G 197 (322)
T 2fb9_A 150 DPPFFVKPANTGSSVGISRVERFQ-DLEAALALAFRYDEKAVVEKALSP 197 (322)
T ss_dssp CSCEEEEETTCCTTTTCEEESSHH-HHHHHHHHHTTTCSEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhcCCeEEEEeCCCC
Confidence 468999999999999999999877 442 2468999999984
No 54
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=96.30 E-value=0.0027 Score=48.68 Aligned_cols=60 Identities=7% Similarity=-0.063 Sum_probs=39.4
Q ss_pred ccceeeeCcch--H-HHHHHHHhcCCce-EEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 28 FPKSWSLPRQW--K-EVISYNREHADET-LILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~--~-~~~~~~~~~~~~~-wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
.|+++.+.... . .+.... +.-+.+ +++||..+..|.||.++++.+ ++. ....++||+||+
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~-~~lg~P~vvVKP~~ggss~Gv~~v~~~~-eL~~a~~~a~~~~~~vlVEe~I~ 226 (372)
T 3tqt_A 155 VVDWHTLSPRDATEGVYQRLL-DRWGTSELFVKAVSLGSSVATLPVKTET-EFTKAVKEVFRYDDRLMVEPRIR 226 (372)
T ss_dssp BCCCEEECTTSCCTTHHHHHH-HHC---CEEEEESSCCSGGGEEEECSHH-HHHHHHHHHTTTCSCEEEEECCC
T ss_pred CCCEEEEechhhhhhHHHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHhcCCCEEEECCCC
Confidence 67777774321 1 111221 224567 999999999999999999887 442 356899999998
No 55
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.27 E-value=0.004 Score=50.70 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=35.2
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
+.++|+||..|+.|+|+.++++.+ ++. ....++||+||+.|
T Consensus 244 GyPvVVKp~~GgGGkGv~iV~s~e-EL~~a~~~a~~~~~~~~vlVEeyI~g~ 294 (587)
T 3jrx_A 244 GFPLMIKASEGGGGKGIRKAESAE-DFPILFRQVQSEIPGSPIFLMKLAQHA 294 (587)
T ss_dssp CSSEEEEETTCCSSSSEEEECSTT-THHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred CCeEEEEeCCCCCCCCeEEeCCHH-HHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 578999999999999999999988 552 25689999999975
No 56
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=96.27 E-value=0.0022 Score=49.03 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.6
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc--------CCCceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV--------MDQDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~~~~~vvQ~YI~ 89 (119)
+.++|+||..++.|.||.++++.+ ++. ....++||+||+
T Consensus 188 g~PvvVKP~~ggss~GV~~v~~~~-eL~~a~~~a~~~~~~vlVEe~I~ 234 (373)
T 3lwb_A 188 GLPVFVKPARGGSSIGVSRVSSWD-QLPAAVARARRHDPKVIVEAAIS 234 (373)
T ss_dssp CSCEEEEESBCSTTTTCEEECSGG-GHHHHHHHHHTTCSSEEEEECCE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCCEEEeCCCC
Confidence 568999999999999999999988 553 256899999998
No 57
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.18 E-value=0.0051 Score=47.25 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=42.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------C------CCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------M------DQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------~------~~~~vvQ~YI~ 89 (119)
.|++..+.+ .++..+.+++ -+.++|+||..++.|+|+.++++.+ ++. . ...+++|+||+
T Consensus 121 ~p~~~~~~~-~~e~~~~~~~-~g~PvvvKp~~~~gg~Gv~~v~~~~-el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 121 TARFEVAET-PEELREKIKK-FSPPYVIKADGLARGKGVLILDSKE-ETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp CCCEEEESS-HHHHHHHHTT-SCSSEEEEESSCCSSCCEEEESSHH-HHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred CCCEEEECC-HHHHHHHHHh-cCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 477766643 4555555432 3568999999999999999998876 331 1 13899999998
No 58
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=96.14 E-value=0.0048 Score=46.37 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=30.3
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCc-cCCCceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHE-VMDQDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i-~~~~~~vvQ~YI~ 89 (119)
+.++|+||..|+.|+|+.++++.+ ++ .....+++|+||+
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~-~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDK-DLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC-------CCCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHH-Hhhhhccchhhhhhcc
Confidence 568999999999999999999988 44 3466899999997
No 59
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.14 E-value=0.0042 Score=49.98 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.1
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 228 gyPvVVKp~~ggGG~Gv~iv~~~~-eL~~a~~~~~~~~~~~~vlVEe~I~g~ 278 (540)
T 3glk_A 228 GFPLMIKASEGGGGKGIRKAESAE-DFPILFRQVQSEIPGSPIFLMKLAQHA 278 (540)
T ss_dssp CSSEEEEETTCC----EEEECSTT-THHHHHHHHHHHSTTCCEEEEECCSSE
T ss_pred CCcEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 568999999999999999999988 553 24689999999974
No 60
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.11 E-value=0.0025 Score=48.14 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=20.1
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCccCC-----CceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEVMD-----QDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~~~-----~~~vvQ~YI~ 89 (119)
+.+.|+||..++.|+|+.++++ + ++... .++++|+||+
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-e-el~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-S-ELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-E-ECSCCCC----CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-H-HHHHHHHhcCCCEEEEeeec
Confidence 5689999999999999999998 7 66421 4789999998
No 61
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=95.81 E-value=0.0032 Score=48.39 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=36.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc-------------------CCCceEEeecc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV-------------------MDQDASCQVYL 88 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-------------------~~~~~vvQ~YI 88 (119)
.|++..+.+ .+++.+ ..-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||
T Consensus 127 ~p~~~~~~~-~~~~~~---~~~g~P~vvKp~~g~gs~Gv~~v~~~~-el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i 201 (425)
T 3vot_A 127 TPVFHEFHT-LADLEN---RKLSYPLVVKPVNGFSSQGVVRVDDRK-ELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFI 201 (425)
T ss_dssp CCCEEEESS-GGGGTT---CCCCSSEEEEESCC-----CEEECSHH-HHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECC
T ss_pred CCceeccCc-HHHHHH---hhcCCcEEEEECCCCCCCCceEechHH-HHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEe
Confidence 466666543 222211 224568999999999999999999887 442 24579999999
Q ss_pred CCc
Q psy3860 89 SNV 91 (119)
Q Consensus 89 ~~P 91 (119)
+-+
T Consensus 202 ~G~ 204 (425)
T 3vot_A 202 DGP 204 (425)
T ss_dssp CSC
T ss_pred cCc
Confidence 854
No 62
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=95.75 E-value=0.005 Score=49.29 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.1
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
+.++|+||..|+.|+|+.++++.+ ++. ....++||+||+.+
T Consensus 234 g~PvVvKp~~g~gg~Gv~~v~~~~-el~~a~~~~~~~~~~~~vlvEe~i~g~ 284 (554)
T 1w96_A 234 GFPVMIKASEGGGGKGIRQVEREE-DFIALYHQAANEIPGSPIFIMKLAGRA 284 (554)
T ss_dssp CSSEEEEETTCCTTTTEEEECSHH-HHHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred CCCEEEEECCCCCCceEEEECCHH-HHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 468999999999999999999877 442 24689999999854
No 63
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=95.54 E-value=0.034 Score=42.36 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=40.6
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCC-CCCCCcEEEecc--CCcCccC--CCceEEeeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTR-GAEGKGIKILNF--IPEHEVM--DQDASCQVYLSN 90 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~-g~~G~GI~l~~~--~~~~i~~--~~~~vvQ~YI~~ 90 (119)
.|++..+.+ .+++.+..++ -+.++|+||.. |+.|+|+.++++ .+ ++.. ...+++|+||+.
T Consensus 94 tp~~~~v~~-~~e~~~~~~~-~G~P~VvKp~~~G~~GkGv~~v~~~~~~-el~~a~~~~vivEe~I~~ 158 (355)
T 3eth_A 94 TAPWQLLAE-RSEWPAVFDR-LGELAIVKRRTGGYDGRGQWRLRANETE-QLPAECYGECIVEQGINF 158 (355)
T ss_dssp BCCEEEECC-GGGHHHHHHH-HCSEEEEEESSSCCTTTTEEEEETTCGG-GSCGGGTTTEEEEECCCC
T ss_pred CCCEEEECC-HHHHHHHHHH-cCCCEEEEecCCCCCCCeEEEEcCCCHH-HHHHHhhCCEEEEEccCC
Confidence 456555543 3344433322 35789999997 599999999999 66 5532 116999999984
No 64
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=95.50 E-value=0.0019 Score=53.32 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred ccceeee-CcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 28 FPKSWSL-PRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~l-p~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
.|+++.. ..+.++..+..++ -+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 156 vpp~~~~~~~s~~e~~~~a~~-igyPvvvKp~~G~Gg~Gv~iv~~~~-el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 156 LVPGYHGEAQDLETFRREAGR-IGYPVLLKAAAGGGGKGMKVVEREA-ELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp BCCCCCSCCCCTTHHHHHHHH-SCSSBCCBCCC------CCCBCCTT-THHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred cCCccccCCCCHHHHHHHHHh-CCCcEEEEECCCCCCccEEEECCHH-HHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 4455542 2233444444332 3568999999999999999999887 442 13579999999987
No 65
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=94.90 E-value=0.023 Score=49.05 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=44.5
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|+++.+.+ .++..+..++ -+.++|+||..+..|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 143 vp~~~~v~~-~~ea~~~~~~-ig~PvVvKp~~~~Gg~Gv~iv~~~e-el~~~~~~~~~~~~~~~vlvEe~I~G~ 213 (1073)
T 1a9x_A 143 TARSGIAHT-MEEALAVAAD-VGFPCIIRPSFTMGGSGGGIAYNRE-EFEEICARGLDLSPTKELLIDESLIGW 213 (1073)
T ss_dssp CCSEEEESS-HHHHHHHHHH-HCSSEEEEETTCCTTTTCEEESSHH-HHHHHHHHHHHHCTTSCEEEEECCTTS
T ss_pred CCCEEEECC-HHHHHHHHHH-cCCCEEEEECCCCCCCceEEeCCHH-HHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 578887754 3444443332 3468999999999999999999887 442 23589999999965
No 66
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=94.85 E-value=0.017 Score=50.37 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=27.2
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 154 iGyPvVVKP~~GgGg~Gv~vv~s~e-eL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 154 AGFPLMIKATSGGGGKGMRIVREES-ELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp TCSSEEEECCC-------CEECCSS-SCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 3568999999999999999999988 553 13578999999987
No 67
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=94.77 E-value=0.0061 Score=50.31 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=3.4
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.|
T Consensus 152 gyPvVvKp~~ggggkGv~iv~~~~-el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~ 206 (681)
T 3n6r_A 152 GYPVMIKASAGGGGKGMRIAWNDQ-EAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206 (681)
T ss_dssp ----------------------------------------------------CCSC
T ss_pred CCcEEEEECCCCCCCCEEEECCHH-HHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Confidence 468999999999999999999887 442 13479999999976
No 68
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=94.74 E-value=0.02 Score=49.44 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=34.2
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc----------CCCceEEeeccCCc
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV----------MDQDASCQVYLSNV 91 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~----------~~~~~vvQ~YI~~P 91 (119)
.|++..+.+ .++..+..++ -+.++++||..+..|+|+.++.+.+ ++. ...++++|+||+.+
T Consensus 689 ~P~~~~~~s-~eea~~~~~~-ig~PvvVKP~~~~gG~Gv~iv~~~~-el~~~~~~a~~~~~~~~vlvEefI~g~ 759 (1073)
T 1a9x_A 689 QPANATVTA-IEMAVEKAKE-IGYPLVVRASYVLGGRAMEIVYDEA-DLRRYFQTAVSVSNDAPVLLDHFLDDA 759 (1073)
T ss_dssp CCCEEECCS-HHHHHHHHHH-HCSSEEEEC-------CEEEECSHH-HHHHHHHHCC--------EEEBCCTTC
T ss_pred CCCceEECC-HHHHHHHHHH-cCCCEEEEECCCCCCCCeEEECCHH-HHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 577776643 3444443332 2468999999999999999998876 432 23579999999976
No 69
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=94.52 E-value=0.038 Score=45.55 Aligned_cols=87 Identities=15% Similarity=0.032 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCcccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCCcEEEeccCCcCcc------
Q psy3860 4 LESKAILAYHLNRMKYFFPDEYNIFPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGKGIKILNFIPEHEV------ 77 (119)
Q Consensus 4 l~~K~~l~~~l~~~~~~~~~~~~~~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~GI~l~~~~~~~i~------ 77 (119)
+.+|.-|+-.=. .++.+ +++++|+.-+.. .. .. .-|+.||..|-.|.||.+.+...+.+.
T Consensus 510 lsNKaiLalLW~----l~p~h-p~LLpt~f~~~~---~~---~~---~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~y 575 (652)
T 2vob_A 510 PSNKAILPMIYH----NHPEH-PAILKAEYELTD---EL---RK---HGYAKKPIVGRVGSNVIITSGDGVVHAESGGKY 575 (652)
T ss_dssp TTSTTHHHHHHH----HCTTC-TTBCCEESSCCH---HH---HH---HCEEEEECC------------------------
T ss_pred hcCHHHHHHHHh----cccCC-CCCCchhhcCCC---cc---cc---CCeEeccCCCCCCCCEEEEcCCchhhhhccccc
Confidence 456665555322 34444 467777744332 11 11 249999999999999999875431111
Q ss_pred CCCceEEeeccCCccccCCceeeEEEEE
Q psy3860 78 MDQDASCQVYLSNVLLINGFKFDLRVKR 105 (119)
Q Consensus 78 ~~~~~vvQ~YI~~Plli~g~KfDlR~yv 105 (119)
..+.+|+|+|++-| ..++.-.=+.+|+
T Consensus 576 ~~~~~IyQe~~~lp-~f~~~~~~iG~~l 602 (652)
T 2vob_A 576 GKRNMIYQQLFELK-KQDDYYAIIGGWM 602 (652)
T ss_dssp ---CEEEEECCC---CBTTBCCEEEEEE
T ss_pred CCCCeEEEecccCC-ccCCcceEEEEEE
Confidence 25789999999966 4565555566665
No 70
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=93.41 E-value=0.033 Score=48.95 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=1.1
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
-+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 179 iGyPvVVKP~~GgGGkGV~iv~s~e-EL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~ 234 (1236)
T 3va7_A 179 LEYPVMVKSTAGGGGIGLQKVDSED-DIERVFETVQHQGKSYFGDAGVFMERFVNNA 234 (1236)
T ss_dssp -------------------------------------------------------CC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHHHHHhccCCCcEEEeeccCCC
Confidence 3568999999999999999999887 442 13568999999964
No 71
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=92.71 E-value=0.022 Score=43.51 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=29.0
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc---------C----C--CceEEeeccC
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV---------M----D--QDASCQVYLS 89 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~---------~----~--~~~vvQ~YI~ 89 (119)
+.+.|+||..++.|+|+.++++.+ ++. . . ..+|||+||+
T Consensus 150 ~~PvVVK~~~~a~GkGv~v~~s~e-e~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 150 DGTVIVKFPGARGGRGYFIASSTE-EFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp CSCEEEECSCCCC---EEEESSHH-HHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCCEEEeeCCCCCCCCEEEECCHH-HHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 468999999999999999999887 332 0 1 4689999999
No 72
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=92.68 E-value=0.051 Score=47.47 Aligned_cols=41 Identities=12% Similarity=0.286 Sum_probs=4.9
Q ss_pred CceEEEecCCCCCCCcEEEeccCCcCcc--------------CCCceEEeeccCCc
Q psy3860 50 DETLILKPTRGAEGKGIKILNFIPEHEV--------------MDQDASCQVYLSNV 91 (119)
Q Consensus 50 ~~~wI~KP~~g~~G~GI~l~~~~~~~i~--------------~~~~~vvQ~YI~~P 91 (119)
+.++|+||..|+.|+|+.++++.+ ++. ....+++|+||+.+
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~e-EL~~a~~~~~~~a~~~fg~~~vlVEefI~gg 225 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEA-DLAKEVTEAKREAMAAFGKDEVYLEKLVERA 225 (1165)
T ss_dssp --------------------------------------------------CCCSSE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHH-HHHHHHHHHHHHHHhhcCCCcEEEEEeccCC
Confidence 468999999999999999999887 442 12468999999864
No 73
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=87.85 E-value=0.24 Score=35.11 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=39.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCC-----CCCCcEEE-eccCCcCcc-------C----------CCceEE
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRG-----AEGKGIKI-LNFIPEHEV-------M----------DQDASC 84 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g-----~~G~GI~l-~~~~~~~i~-------~----------~~~~vv 84 (119)
.|++..+.+ .++..+...+ -+.++++||..+ +.|.|+.+ +++.+ ++. . ...++|
T Consensus 36 ~p~~~~~~~-~~ea~~~a~~-lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~-el~~a~~~~~~~~~~~~~~~~~~~vlV 112 (238)
T 1wr2_A 36 VPEEKLAKT-LDEALEYAKE-IGYPVVLKLMSPQILHKSDAKVVMLNIKNEE-ELKKKWEEIHENAKKYRPDAEILGVLV 112 (238)
T ss_dssp CCCCEEESS-HHHHHHHHHH-HCSSEEEEEECTTCCCHHHHTCEEEEECSHH-HHHHHHHHHHHHHHHHCTTCCCCEEEE
T ss_pred CCCeEEeCC-HHHHHHHHHH-hCCCEEEEEccCCCCcCCccCCEEEeCCCHH-HHHHHHHHHHHhhhhhCCCCccceEEE
Confidence 677777643 3444333222 246899999988 66778888 67766 432 0 257999
Q ss_pred eeccCC
Q psy3860 85 QVYLSN 90 (119)
Q Consensus 85 Q~YI~~ 90 (119)
|+||+.
T Consensus 113 Ee~i~~ 118 (238)
T 1wr2_A 113 APMLKP 118 (238)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999983
No 74
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=73.39 E-value=5 Score=30.87 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=27.4
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecC--CCCCCCc---------EEEeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPT--RGAEGKG---------IKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~--~g~~G~G---------I~l~~~~~ 73 (119)
.|++....+ .++..+..++-...++++||. .|.||+| +.+.++.+
T Consensus 19 vp~~~~~~s-~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~ 74 (395)
T 2fp4_B 19 VQRFFVADT-ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPE 74 (395)
T ss_dssp CCCEEEESS-HHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHH
T ss_pred CCCeEEECC-HHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHH
Confidence 566666643 445554443322226899995 6667766 88887665
No 75
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=70.50 E-value=5.8 Score=30.51 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=37.1
Q ss_pred ccceeeeCcchHHHHHHHHhcCCceEEEecCCCCCCC----cEEEeccCCcCcc-------C-------CCceEEeeccC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADETLILKPTRGAEGK----GIKILNFIPEHEV-------M-------DQDASCQVYLS 89 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~wI~KP~~g~~G~----GI~l~~~~~~~i~-------~-------~~~~vvQ~YI~ 89 (119)
.|++....+ .++..+..++ -+.++++||.....|+ |+.+.++.+ ++. . ....++|++++
T Consensus 19 vp~~~~~~s-~eea~~aa~~-lG~PvVvKa~~~~ggkg~~GGV~l~~s~e-e~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 19 VPPGKVAYT-PEEAKRIAEE-FGKRVVIKAQVHVGGRGKAGGVKLADTPQ-EAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp CCCEEEESS-HHHHHHHHHH-HTSCEEEEECCSSSCTTTTTCEEEESSHH-HHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCCeEEECC-HHHHHHHHHH-cCCCEEEEEccccCCCCccceEEEeCCHH-HHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 677777754 3444443332 2478999999744444 999997665 331 1 24688898886
No 76
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=64.41 E-value=17 Score=28.45 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=39.8
Q ss_pred CCceEEEecCCCCCCCcEEEeccCCcCcc-----------------CCCceEEeeccCCccccCCceeeEEEE
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIPEHEV-----------------MDQDASCQVYLSNVLLINGFKFDLRVK 104 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~~~i~-----------------~~~~~vvQ~YI~~Plli~g~KfDlR~y 104 (119)
.+...|+|.++|.=|-||..+++.+ ++. .-...|||+-|.---.+++---.==+|
T Consensus 276 ~~PfV~VKADaGTYGMGImtV~s~~-ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVY 347 (432)
T 3k1t_A 276 QEPFVIVKADAGTYGMGIMTVKSAD-DVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIY 347 (432)
T ss_dssp SCCCEEEEEECGGGCEEEEEESSGG-GGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEE
T ss_pred CCceEEEEcCCCCCCceEEEecCHH-HHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEE
Confidence 4567899999999999999999998 552 235789999887444455544443333
No 77
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=56.12 E-value=18 Score=27.55 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred ccceeeeCcchHHHHHHHHhcCCce-EEEecCCCC--CCC--cEEEeccCC
Q psy3860 28 FPKSWSLPRQWKEVISYNREHADET-LILKPTRGA--EGK--GIKILNFIP 73 (119)
Q Consensus 28 ~P~T~~lp~~~~~~~~~~~~~~~~~-wI~KP~~g~--~G~--GI~l~~~~~ 73 (119)
.|++....+ .++..+..++ -+.+ +++||..+. +|+ |+.++.+.+
T Consensus 19 vp~~~~~~s-~eea~~aa~~-lG~P~vVvK~~~~~ggrg~~gGV~l~~s~e 67 (388)
T 2nu8_B 19 APVGYACTT-PREAEEAASK-IGAGPWVVKCQVHAGGRGKAGGVKVVNSKE 67 (388)
T ss_dssp CCCEEEESS-HHHHHHHHHH-HCSSCEEEEECCSSSCTTTTTCEEEECSHH
T ss_pred CCCeeEECC-HHHHHHHHHH-hCCCeEEEEEecCCCCCCccCCEEEECCHH
Confidence 466666643 3444443332 2346 899999763 333 999997665
No 78
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=32.77 E-value=32 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCcEEEeccCCcCcc-CCCceEEeeccCCccccCC--ceeeEEEEE
Q psy3860 63 GKGIKILNFIPEHEV-MDQDASCQVYLSNVLLING--FKFDLRVKR 105 (119)
Q Consensus 63 G~GI~l~~~~~~~i~-~~~~~vvQ~YI~~Plli~g--~KfDlR~yv 105 (119)
|.|...++... +. .-.+...+.-|-.|+++-+ -+||+++-|
T Consensus 21 G~G~i~VNg~~--l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V 64 (127)
T 3r8n_I 21 GNGKIVINQRS--LEQYFGRETARMVVRQPLELVDMVEKLDLYITV 64 (127)
T ss_dssp SCSCEEETTBC--STTTTTTSTTTTTTTGGGSSSCCSSSEEEEEEE
T ss_pred CcEEEEECCEe--HHHHcCCHHHHHHHHHHHHHhCccCccceEEEE
Confidence 66778887665 21 1123345556666887754 378988766
No 79
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=28.22 E-value=26 Score=20.95 Aligned_cols=8 Identities=63% Similarity=0.601 Sum_probs=6.8
Q ss_pred ceeeEEEE
Q psy3860 97 FKFDLRVK 104 (119)
Q Consensus 97 ~KfDlR~y 104 (119)
-|||||-|
T Consensus 37 pKyDIR~W 44 (80)
T 3pm7_A 37 PKFDLREW 44 (80)
T ss_dssp CEEEEEEE
T ss_pred CCcccccc
Confidence 38999987
No 80
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=26.30 E-value=30 Score=20.67 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=6.8
Q ss_pred eeeEEEEE
Q psy3860 98 KFDLRVKR 105 (119)
Q Consensus 98 KfDlR~yv 105 (119)
|||||-|-
T Consensus 45 KyDIR~W~ 52 (79)
T 4g06_A 45 KFDIRAWS 52 (79)
T ss_dssp EEEEEEEC
T ss_pred CccccccC
Confidence 89999873
No 81
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=23.65 E-value=36 Score=20.46 Aligned_cols=8 Identities=50% Similarity=0.696 Sum_probs=6.8
Q ss_pred ceeeEEEE
Q psy3860 97 FKFDLRVK 104 (119)
Q Consensus 97 ~KfDlR~y 104 (119)
-|||||-|
T Consensus 39 pKyDIR~W 46 (82)
T 2l3a_A 39 AKFDIRAW 46 (82)
T ss_dssp EEEEEEEE
T ss_pred CCcccccc
Confidence 38999988
No 82
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=22.74 E-value=76 Score=17.53 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCceEEEecCCCCCCCcEEEeccCC
Q psy3860 49 ADETLILKPTRGAEGKGIKILNFIP 73 (119)
Q Consensus 49 ~~~~wI~KP~~g~~G~GI~l~~~~~ 73 (119)
+...|.++|. |-.|--|-++..++
T Consensus 18 P~KvWvL~P~-GrkGVkIgLFk~P~ 41 (56)
T 3kxt_A 18 PEKVWALAPK-GRKGVKIGLFKDPE 41 (56)
T ss_dssp CSEEEEECCT-TSCCEEEEEEECTT
T ss_pred eeEEEEEcCC-CCCceEEEEEECCC
Confidence 5679999995 34555566677663
No 83
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=20.84 E-value=24 Score=16.44 Aligned_cols=9 Identities=22% Similarity=0.804 Sum_probs=6.6
Q ss_pred CCCccccee
Q psy3860 24 EYNIFPKSW 32 (119)
Q Consensus 24 ~~~~~P~T~ 32 (119)
.++|+|+|-
T Consensus 9 dydflpete 17 (28)
T 1g1s_C 9 DYDFLPETE 17 (28)
T ss_pred cccccccCC
Confidence 578888874
Done!