RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3860
         (119 letters)



>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
          ribonucleotide synthetase PurP {Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 235

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 53 LILKPTRGAEGKGIKILNFIPEHEVMDQDASCQVYLS 89
          +I+KP     GKG  +     +     +         
Sbjct: 30 VIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,597
Number of extensions: 19744
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)