Query psy3862
Match_columns 671
No_of_seqs 317 out of 2136
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:21:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05096 guanosine 5'-monophos 100.0 1.8E-90 3.9E-95 724.5 19.3 328 287-669 1-344 (346)
2 TIGR01305 GMP_reduct_1 guanosi 100.0 1.5E-85 3.2E-90 688.0 19.9 327 288-669 1-343 (343)
3 PF00478 IMPDH: IMP dehydrogen 100.0 1.5E-78 3.2E-83 646.0 10.5 321 293-666 1-346 (352)
4 PRK05096 guanosine 5'-monophos 100.0 7.9E-70 1.7E-74 569.1 32.7 343 12-571 2-345 (346)
5 KOG2550|consensus 100.0 7.6E-71 1.6E-75 578.0 11.7 325 290-669 25-490 (503)
6 TIGR01305 GMP_reduct_1 guanosi 100.0 6.5E-66 1.4E-70 540.0 33.2 337 15-568 4-341 (343)
7 PRK06843 inosine 5-monophospha 100.0 6E-66 1.3E-70 558.7 16.4 323 286-664 2-390 (404)
8 TIGR01303 IMP_DH_rel_1 IMP deh 100.0 1.4E-65 3E-70 570.3 16.0 320 291-664 8-465 (475)
9 PF00478 IMPDH: IMP dehydrogen 100.0 6.2E-63 1.3E-67 526.3 29.6 325 18-565 2-344 (352)
10 PRK07107 inosine 5-monophospha 100.0 6.7E-63 1.4E-67 552.1 15.5 325 289-664 4-481 (502)
11 PTZ00314 inosine-5'-monophosph 100.0 5.3E-61 1.1E-65 537.2 27.4 372 17-664 16-481 (495)
12 KOG2550|consensus 100.0 2.3E-61 4.9E-66 506.7 20.1 371 10-557 20-477 (503)
13 PRK07807 inosine 5-monophospha 100.0 1E-61 2.2E-66 539.8 16.4 319 292-664 10-467 (479)
14 PLN02274 inosine-5'-monophosph 100.0 2.2E-57 4.9E-62 508.4 31.1 379 11-664 13-487 (505)
15 TIGR01306 GMP_reduct_2 guanosi 100.0 2.2E-58 4.8E-63 487.1 18.1 305 295-667 2-320 (321)
16 TIGR01302 IMP_dehydrog inosine 100.0 2.8E-57 6.2E-62 503.4 27.7 362 18-654 1-450 (450)
17 PRK05567 inosine 5'-monophosph 100.0 1.1E-55 2.4E-60 495.1 28.1 374 15-664 5-464 (486)
18 cd00381 IMPDH IMPDH: The catal 100.0 5E-56 1.1E-60 474.4 18.2 312 294-661 1-325 (325)
19 TIGR01303 IMP_DH_rel_1 IMP deh 100.0 3.9E-54 8.5E-59 478.7 29.2 369 15-565 8-465 (475)
20 PRK06843 inosine 5-monophospha 100.0 7.1E-53 1.5E-57 456.8 30.6 325 15-565 6-390 (404)
21 PRK07807 inosine 5-monophospha 100.0 1.3E-52 2.9E-57 466.8 29.1 368 16-565 10-467 (479)
22 PRK07107 inosine 5-monophospha 100.0 4.7E-53 1E-57 472.9 24.6 382 13-565 4-481 (502)
23 PRK08649 inosine 5-monophospha 100.0 3.7E-50 8E-55 433.9 16.7 295 286-659 7-366 (368)
24 PRK05458 guanosine 5'-monophos 100.0 5.6E-50 1.2E-54 424.8 16.7 303 293-664 3-319 (326)
25 TIGR01306 GMP_reduct_2 guanosi 100.0 1.8E-47 4E-52 404.1 29.6 313 19-565 2-316 (321)
26 cd00381 IMPDH IMPDH: The catal 100.0 7.5E-45 1.6E-49 388.4 31.0 319 18-561 1-324 (325)
27 PRK05458 guanosine 5'-monophos 100.0 1.8E-41 3.9E-46 359.9 28.5 314 17-565 3-319 (326)
28 TIGR01302 IMP_dehydrog inosine 100.0 5.1E-42 1.1E-46 381.4 13.1 246 294-593 1-387 (450)
29 PLN02274 inosine-5'-monophosph 100.0 1.6E-41 3.5E-46 380.6 12.7 250 290-593 17-411 (505)
30 PRK08649 inosine 5-monophospha 100.0 1.6E-38 3.5E-43 343.5 24.5 326 15-555 12-362 (368)
31 TIGR01304 IMP_DH_rel_2 IMP deh 100.0 1.5E-39 3.3E-44 350.7 14.0 292 287-655 5-365 (369)
32 PTZ00314 inosine-5'-monophosph 100.0 8.3E-39 1.8E-43 358.5 13.5 229 293-549 16-386 (495)
33 PRK05567 inosine 5'-monophosph 100.0 4.2E-38 9E-43 353.3 12.3 249 291-593 5-391 (486)
34 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 1.5E-25 3.2E-30 242.3 22.1 328 16-554 10-363 (369)
35 COG0516 GuaB IMP dehydrogenase 99.8 2.8E-21 6E-26 189.1 1.9 79 291-374 11-89 (170)
36 cd02811 IDI-2_FMN Isopentenyl- 99.6 7.5E-15 1.6E-19 157.8 16.3 216 17-241 18-284 (326)
37 TIGR03151 enACPred_II putative 99.6 8.6E-15 1.9E-19 156.1 15.8 185 51-259 6-200 (307)
38 PF03060 NMO: Nitronate monoox 99.6 7.6E-15 1.6E-19 158.0 15.1 201 51-271 6-241 (330)
39 PRK05437 isopentenyl pyrophosp 99.6 1.1E-14 2.4E-19 157.9 15.5 216 17-241 26-290 (352)
40 TIGR02151 IPP_isom_2 isopenten 99.6 1E-14 2.3E-19 157.1 13.6 215 18-241 20-283 (333)
41 cd04743 NPD_PKS 2-Nitropropane 99.6 8.7E-14 1.9E-18 148.1 16.9 190 56-268 2-221 (320)
42 COG2070 Dioxygenases related t 99.5 3.7E-13 8E-18 145.0 14.2 192 51-261 9-225 (336)
43 COG0516 GuaB IMP dehydrogenase 99.4 2.3E-14 5.1E-19 140.3 0.8 78 16-98 12-89 (170)
44 cd02809 alpha_hydroxyacid_oxid 99.4 8.9E-12 1.9E-16 132.5 15.8 204 18-241 33-256 (299)
45 cd04742 NPD_FabD 2-Nitropropan 99.4 8.3E-12 1.8E-16 137.2 15.6 201 51-269 8-268 (418)
46 TIGR02814 pfaD_fam PfaD family 99.3 5.6E-11 1.2E-15 131.5 16.4 201 51-268 13-272 (444)
47 cd02808 GltS_FMN Glutamate syn 99.1 5.4E-10 1.2E-14 123.2 14.0 235 18-261 36-326 (392)
48 cd02922 FCB2_FMN Flavocytochro 98.9 3.1E-08 6.7E-13 107.5 17.4 207 18-241 33-300 (344)
49 cd02811 IDI-2_FMN Isopentenyl- 98.8 2.1E-08 4.5E-13 108.2 12.3 221 292-533 17-276 (326)
50 cd02809 alpha_hydroxyacid_oxid 98.8 2E-08 4.3E-13 107.0 10.1 197 295-532 34-247 (299)
51 cd04730 NPD_like 2-Nitropropan 98.7 2.8E-07 6E-12 94.2 16.2 172 56-241 2-185 (236)
52 PRK05437 isopentenyl pyrophosp 98.7 1.1E-07 2.4E-12 103.6 13.1 274 293-657 26-336 (352)
53 TIGR03151 enACPred_II putative 98.7 3.2E-08 6.8E-13 105.9 7.2 140 329-477 8-199 (307)
54 cd03332 LMO_FMN L-Lactate 2-mo 98.6 6.9E-07 1.5E-11 98.1 15.4 209 18-241 54-337 (383)
55 TIGR02151 IPP_isom_2 isopenten 98.6 4.7E-07 1E-11 98.0 13.3 267 295-657 21-329 (333)
56 PLN02535 glycolate oxidase 98.6 1.8E-06 4E-11 94.2 17.4 205 17-241 40-307 (364)
57 PRK11197 lldD L-lactate dehydr 98.5 1.9E-06 4.2E-11 94.5 15.8 211 18-241 39-329 (381)
58 PLN02493 probable peroxisomal 98.5 2.3E-06 5.1E-11 93.3 15.3 204 17-241 38-308 (367)
59 cd02911 arch_FMN Archeal FMN-b 98.5 1.5E-06 3.3E-11 89.6 12.9 174 58-241 1-220 (233)
60 PF01070 FMN_dh: FMN-dependent 98.5 1.6E-06 3.5E-11 94.6 13.6 214 17-265 26-317 (356)
61 cd04737 LOX_like_FMN L-Lactate 98.4 3.4E-06 7.3E-11 91.8 14.9 205 18-241 41-305 (351)
62 cd04736 MDH_FMN Mandelate dehy 98.4 6.2E-06 1.4E-10 89.9 15.3 213 17-241 32-318 (361)
63 PLN02493 probable peroxisomal 98.3 2.1E-06 4.5E-11 93.7 10.2 257 296-655 41-352 (367)
64 TIGR02708 L_lactate_ox L-lacta 98.3 1.8E-05 3.9E-10 86.6 17.1 207 18-241 49-312 (367)
65 PLN02979 glycolate oxidase 98.3 2.2E-05 4.8E-10 85.4 17.4 195 24-241 44-307 (366)
66 PLN02535 glycolate oxidase 98.3 1.5E-06 3.1E-11 95.0 8.2 254 296-655 43-351 (364)
67 PF01645 Glu_synthase: Conserv 98.3 4.3E-07 9.4E-12 99.0 3.5 193 47-241 56-303 (368)
68 cd04736 MDH_FMN Mandelate dehy 98.3 4.3E-06 9.4E-11 91.2 10.8 256 295-653 34-360 (361)
69 PRK11197 lldD L-lactate dehydr 98.3 4.4E-06 9.5E-11 91.7 10.9 256 296-655 41-373 (381)
70 TIGR02708 L_lactate_ox L-lacta 98.3 2.7E-06 5.9E-11 92.9 9.2 257 296-655 51-356 (367)
71 cd03332 LMO_FMN L-Lactate 2-mo 98.2 3.6E-06 7.7E-11 92.5 9.7 258 295-654 55-380 (383)
72 cd04730 NPD_like 2-Nitropropan 98.2 4.8E-06 1E-10 85.0 9.2 182 332-548 2-197 (236)
73 PLN02979 glycolate oxidase 98.1 1E-05 2.2E-10 88.0 10.3 254 300-655 44-351 (366)
74 TIGR01037 pyrD_sub1_fam dihydr 98.0 8.6E-05 1.9E-09 79.1 14.4 195 41-241 1-263 (300)
75 PF03060 NMO: Nitronate monoox 98.0 2.6E-05 5.7E-10 84.4 9.4 139 331-479 10-230 (330)
76 cd02922 FCB2_FMN Flavocytochro 97.9 3.5E-05 7.5E-10 83.9 9.7 162 296-469 35-242 (344)
77 PF01070 FMN_dh: FMN-dependent 97.9 1.4E-05 2.9E-10 87.5 6.6 207 295-533 28-301 (356)
78 COG1304 idi Isopentenyl diphos 97.9 4.2E-05 9E-10 83.6 9.1 221 18-268 33-313 (360)
79 cd00452 KDPG_aldolase KDPG and 97.9 5.7E-05 1.2E-09 75.4 9.1 60 171-239 19-81 (190)
80 cd02810 DHOD_DHPD_FMN Dihydroo 97.7 0.00039 8.5E-09 73.5 13.5 189 51-241 4-272 (289)
81 COG1304 idi Isopentenyl diphos 97.7 0.00012 2.7E-09 80.0 9.8 253 295-658 34-349 (360)
82 cd04742 NPD_FabD 2-Nitropropan 97.7 9.4E-05 2E-09 82.1 8.8 47 330-376 11-59 (418)
83 cd04737 LOX_like_FMN L-Lactate 97.7 7.4E-05 1.6E-09 81.5 7.6 256 296-654 43-348 (351)
84 cd04738 DHOD_2_like Dihydrooro 97.7 0.00043 9.3E-09 74.9 12.6 197 36-241 34-309 (327)
85 PRK07259 dihydroorotate dehydr 97.6 0.0016 3.4E-08 69.5 16.2 195 40-241 1-263 (301)
86 TIGR02814 pfaD_fam PfaD family 97.6 0.00022 4.8E-09 79.7 9.4 47 330-376 16-64 (444)
87 cd04739 DHOD_like Dihydroorota 97.6 0.0024 5.1E-08 69.2 16.9 134 107-241 101-266 (325)
88 TIGR01182 eda Entner-Doudoroff 97.6 0.0039 8.5E-08 63.2 17.2 69 113-186 16-85 (204)
89 cd00452 KDPG_aldolase KDPG and 97.6 0.0048 1E-07 61.6 17.7 109 113-240 12-123 (190)
90 PRK01130 N-acetylmannosamine-6 97.6 0.0023 4.9E-08 65.2 15.4 160 70-241 26-202 (221)
91 PRK11750 gltB glutamate syntha 97.5 0.0002 4.3E-09 88.9 8.2 217 17-243 829-1098(1485)
92 COG2070 Dioxygenases related t 97.5 0.0002 4.3E-09 77.9 7.3 144 328-479 10-224 (336)
93 cd04743 NPD_PKS 2-Nitropropane 97.5 0.00038 8.1E-09 75.0 8.9 45 332-376 2-48 (320)
94 TIGR00736 nifR3_rel_arch TIM-b 97.5 0.00076 1.6E-08 69.6 10.7 161 71-241 33-220 (231)
95 TIGR01036 pyrD_sub2 dihydrooro 97.4 0.0011 2.4E-08 72.0 11.4 189 41-241 46-317 (335)
96 PF04131 NanE: Putative N-acet 97.4 0.00074 1.6E-08 67.2 9.0 115 119-241 54-173 (192)
97 cd04740 DHOD_1B_like Dihydroor 97.4 0.003 6.4E-08 67.2 14.1 188 51-241 5-260 (296)
98 PRK05286 dihydroorotate dehydr 97.4 0.00091 2E-08 72.9 10.3 195 37-241 45-318 (344)
99 TIGR00737 nifR3_yhdG putative 97.3 0.0035 7.5E-08 67.6 13.8 183 52-241 3-222 (319)
100 PRK06552 keto-hydroxyglutarate 97.3 0.017 3.7E-07 59.0 18.0 99 121-240 30-135 (213)
101 PRK07565 dihydroorotate dehydr 97.3 0.0069 1.5E-07 65.7 16.1 134 107-241 103-268 (334)
102 cd02940 DHPD_FMN Dihydropyrimi 97.2 0.0027 5.9E-08 67.9 11.6 128 113-241 108-281 (299)
103 cd02808 GltS_FMN Glutamate syn 97.2 0.0023 5E-08 71.0 11.2 77 295-371 37-122 (392)
104 KOG0538|consensus 97.2 0.01 2.2E-07 62.8 15.1 205 18-241 37-307 (363)
105 cd04741 DHOD_1A_like Dihydroor 97.1 0.0053 1.1E-07 65.6 12.9 189 51-241 4-272 (294)
106 PRK08318 dihydropyrimidine deh 97.1 0.0051 1.1E-07 68.8 12.6 124 115-241 111-282 (420)
107 PRK02506 dihydroorotate dehydr 97.1 0.0042 9.2E-08 66.8 11.4 194 40-241 1-270 (310)
108 PLN02495 oxidoreductase, actin 97.0 0.023 4.9E-07 63.0 17.1 199 36-241 6-299 (385)
109 cd04729 NanE N-acetylmannosami 97.0 0.0076 1.7E-07 61.3 12.3 117 119-241 82-206 (219)
110 COG0069 GltB Glutamate synthas 96.9 0.0031 6.7E-08 71.0 8.5 189 51-241 161-403 (485)
111 PRK09140 2-dehydro-3-deoxy-6-p 96.7 0.0057 1.2E-07 62.1 8.7 69 389-469 111-180 (206)
112 TIGR00343 pyridoxal 5'-phospha 96.7 0.011 2.3E-07 62.5 10.8 116 119-241 79-228 (287)
113 PRK10415 tRNA-dihydrouridine s 96.7 0.071 1.5E-06 57.7 17.5 183 52-241 5-224 (321)
114 cd04732 HisA HisA. Phosphorib 96.7 0.02 4.4E-07 58.4 12.6 45 147-191 61-105 (234)
115 COG3010 NanE Putative N-acetyl 96.7 0.011 2.3E-07 59.6 9.9 168 224-469 36-210 (229)
116 COG3010 NanE Putative N-acetyl 96.6 0.055 1.2E-06 54.6 14.1 169 58-241 23-209 (229)
117 PF04131 NanE: Putative N-acet 96.6 0.0061 1.3E-07 60.8 7.5 94 363-469 77-174 (192)
118 PRK09140 2-dehydro-3-deoxy-6-p 96.5 0.21 4.5E-06 50.8 18.0 108 113-240 18-130 (206)
119 PRK06552 keto-hydroxyglutarate 96.5 0.017 3.6E-07 59.1 9.9 70 388-469 115-184 (213)
120 PRK07455 keto-hydroxyglutarate 96.4 0.16 3.5E-06 50.7 16.6 101 120-240 28-131 (187)
121 cd04727 pdxS PdxS is a subunit 96.4 0.027 5.8E-07 59.5 11.1 116 119-241 77-225 (283)
122 PRK05718 keto-hydroxyglutarate 96.3 0.071 1.5E-06 54.5 13.5 109 113-240 23-134 (212)
123 PLN02826 dihydroorotate dehydr 96.3 0.05 1.1E-06 60.8 13.4 80 159-241 264-370 (409)
124 cd00331 IGPS Indole-3-glycerol 96.3 0.18 3.9E-06 51.2 16.3 124 332-469 72-202 (217)
125 PRK01130 N-acetylmannosamine-6 96.2 0.018 3.9E-07 58.7 8.5 66 170-241 77-146 (221)
126 PRK04180 pyridoxal biosynthesi 96.2 0.02 4.3E-07 60.7 8.8 116 119-241 86-234 (293)
127 PRK11815 tRNA-dihydrouridine s 96.1 0.12 2.5E-06 56.4 14.9 181 56-241 10-233 (333)
128 PF01081 Aldolase: KDPG and KH 96.1 0.01 2.2E-07 59.9 6.2 71 388-469 107-177 (196)
129 PRK05848 nicotinate-nucleotide 96.1 0.012 2.6E-07 62.3 6.7 88 146-241 167-257 (273)
130 PRK05718 keto-hydroxyglutarate 96.1 0.044 9.5E-07 56.0 10.5 60 171-238 30-91 (212)
131 PRK10550 tRNA-dihydrouridine s 96.0 0.22 4.7E-06 53.8 16.2 188 57-261 1-233 (312)
132 PF01081 Aldolase: KDPG and KH 96.0 0.074 1.6E-06 53.8 11.7 110 113-241 16-128 (196)
133 TIGR00742 yjbN tRNA dihydrouri 96.0 0.095 2.1E-06 56.7 13.4 189 58-262 2-233 (318)
134 PRK06015 keto-hydroxyglutarate 96.0 0.12 2.5E-06 52.6 13.1 110 113-241 12-124 (201)
135 PRK00278 trpC indole-3-glycero 96.0 0.17 3.7E-06 53.2 14.6 128 332-469 111-241 (260)
136 cd02801 DUS_like_FMN Dihydrour 95.9 0.46 9.9E-06 48.3 17.4 178 58-241 1-213 (231)
137 COG0269 SgbH 3-hexulose-6-phos 95.8 0.13 2.8E-06 52.5 12.4 52 358-409 133-192 (217)
138 cd04722 TIM_phosphate_binding 95.8 0.064 1.4E-06 51.7 10.1 114 124-241 79-199 (200)
139 KOG0538|consensus 95.7 0.089 1.9E-06 56.0 10.9 260 297-656 40-352 (363)
140 PF01645 Glu_synthase: Conserv 95.7 0.01 2.2E-07 65.3 4.1 108 362-469 182-304 (368)
141 COG0042 tRNA-dihydrouridine sy 95.7 0.16 3.4E-06 55.2 13.2 191 52-263 6-239 (323)
142 PRK06015 keto-hydroxyglutarate 95.6 0.069 1.5E-06 54.1 9.6 60 171-238 19-80 (201)
143 PRK07114 keto-hydroxyglutarate 95.6 0.36 7.8E-06 49.7 14.9 101 120-241 31-139 (222)
144 COG0800 Eda 2-keto-3-deoxy-6-p 95.6 0.16 3.4E-06 51.8 11.9 110 113-241 21-133 (211)
145 PRK00311 panB 3-methyl-2-oxobu 95.6 0.27 5.9E-06 51.9 14.3 27 162-188 16-42 (264)
146 TIGR00262 trpA tryptophan synt 95.5 0.2 4.4E-06 52.6 13.1 121 345-469 104-228 (256)
147 KOG3111|consensus 95.5 0.086 1.9E-06 52.7 9.3 114 72-189 79-198 (224)
148 PRK00748 1-(5-phosphoribosyl)- 95.4 0.39 8.4E-06 49.0 14.6 66 171-241 33-103 (233)
149 PRK02227 hypothetical protein; 95.4 0.098 2.1E-06 54.2 10.0 73 340-412 128-211 (238)
150 cd06557 KPHMT-like Ketopantoat 95.4 0.64 1.4E-05 48.9 16.1 78 162-241 13-111 (254)
151 PRK02083 imidazole glycerol ph 95.3 0.25 5.4E-06 51.5 12.8 66 171-241 33-103 (253)
152 PF04476 DUF556: Protein of un 95.2 0.2 4.4E-06 51.7 11.4 72 341-412 129-211 (235)
153 PLN02746 hydroxymethylglutaryl 95.2 0.14 3.1E-06 56.1 11.0 102 172-278 72-178 (347)
154 cd04732 HisA HisA. Phosphorib 95.2 0.19 4.1E-06 51.3 11.3 121 107-241 75-219 (234)
155 cd00331 IGPS Indole-3-glycerol 95.1 0.11 2.4E-06 52.7 9.5 109 120-241 85-201 (217)
156 cd04729 NanE N-acetylmannosami 95.1 0.21 4.5E-06 50.9 11.2 66 170-241 81-150 (219)
157 PRK07455 keto-hydroxyglutarate 95.0 0.27 6E-06 49.1 11.7 68 391-469 114-181 (187)
158 PRK07114 keto-hydroxyglutarate 95.0 0.17 3.6E-06 52.2 10.2 77 388-481 118-196 (222)
159 PF01180 DHO_dh: Dihydroorotat 95.0 0.17 3.6E-06 53.9 10.7 122 116-241 111-273 (295)
160 PRK13125 trpA tryptophan synth 95.0 0.63 1.4E-05 48.4 14.7 119 343-469 88-215 (244)
161 PRK13585 1-(5-phosphoribosyl)- 94.9 0.35 7.6E-06 49.7 12.4 121 107-241 78-222 (241)
162 PRK13587 1-(5-phosphoribosyl)- 94.8 0.6 1.3E-05 48.4 13.9 168 171-409 34-221 (234)
163 cd02911 arch_FMN Archeal FMN-b 94.8 0.17 3.6E-06 52.5 9.7 28 334-361 1-28 (233)
164 TIGR00262 trpA tryptophan synt 94.8 0.4 8.7E-06 50.3 12.6 130 55-189 86-228 (256)
165 TIGR00735 hisF imidazoleglycer 94.7 0.71 1.5E-05 48.2 14.4 65 171-241 33-103 (254)
166 PRK13585 1-(5-phosphoribosyl)- 94.6 0.89 1.9E-05 46.7 14.6 66 171-241 35-105 (241)
167 COG0167 PyrD Dihydroorotate de 94.5 0.6 1.3E-05 50.4 13.3 125 116-241 108-270 (310)
168 COG0069 GltB Glutamate synthas 94.5 0.03 6.6E-07 63.2 3.6 107 362-468 282-403 (485)
169 PRK07428 nicotinate-nucleotide 94.4 0.07 1.5E-06 57.0 6.0 85 147-241 182-271 (288)
170 PLN02424 ketopantoate hydroxym 94.4 1 2.3E-05 48.9 14.9 31 450-482 204-234 (332)
171 cd04731 HisF The cyclase subun 94.2 1.2 2.6E-05 45.9 14.6 64 171-241 30-100 (243)
172 cd04728 ThiG Thiazole synthase 94.2 0.19 4.2E-06 52.2 8.5 66 168-241 131-204 (248)
173 PRK00208 thiG thiazole synthas 94.1 0.21 4.6E-06 52.0 8.5 66 168-241 131-204 (250)
174 TIGR00343 pyridoxal 5'-phospha 94.0 1.1 2.3E-05 47.8 13.5 61 168-239 76-139 (287)
175 TIGR00007 phosphoribosylformim 93.9 0.56 1.2E-05 47.9 11.3 122 106-241 73-218 (230)
176 PRK00748 1-(5-phosphoribosyl)- 93.7 0.96 2.1E-05 46.1 12.6 122 107-242 76-221 (233)
177 PRK14024 phosphoribosyl isomer 93.5 1.4 3E-05 45.7 13.5 62 171-241 35-104 (241)
178 cd06556 ICL_KPHMT Members of t 93.4 0.88 1.9E-05 47.4 11.8 80 162-241 13-109 (240)
179 TIGR01182 eda Entner-Doudoroff 93.4 0.1 2.2E-06 53.0 4.7 103 347-473 24-130 (204)
180 cd04723 HisA_HisF Phosphoribos 93.3 1.6 3.5E-05 45.0 13.6 62 171-241 38-107 (233)
181 cd04727 pdxS PdxS is a subunit 93.2 1.6 3.5E-05 46.3 13.4 59 170-239 76-137 (283)
182 TIGR03572 WbuZ glycosyl amidat 93.2 0.94 2E-05 46.4 11.6 122 106-241 75-227 (232)
183 cd04724 Tryptophan_synthase_al 93.1 1.3 2.8E-05 46.1 12.5 120 345-469 93-216 (242)
184 CHL00200 trpA tryptophan synth 93.0 1.5 3.3E-05 46.3 13.0 127 55-189 90-232 (263)
185 PLN02591 tryptophan synthase 93.0 1.5 3.2E-05 46.1 12.6 129 55-189 77-219 (250)
186 TIGR00007 phosphoribosylformim 92.9 3.2 6.9E-05 42.3 14.9 66 171-241 31-101 (230)
187 COG0826 Collagenase and relate 92.8 2.9 6.2E-05 46.0 15.2 48 332-379 113-161 (347)
188 TIGR03572 WbuZ glycosyl amidat 92.7 5.3 0.00012 40.9 16.3 62 171-241 33-103 (232)
189 PF04481 DUF561: Protein of un 92.6 0.68 1.5E-05 47.3 9.2 194 111-377 18-233 (242)
190 PRK07695 transcriptional regul 92.6 0.51 1.1E-05 47.4 8.4 84 152-241 87-177 (201)
191 cd00405 PRAI Phosphoribosylant 92.6 3.5 7.5E-05 41.4 14.5 157 68-241 7-181 (203)
192 PRK05692 hydroxymethylglutaryl 92.6 0.88 1.9E-05 48.6 10.6 103 172-279 30-137 (287)
193 cd02940 DHPD_FMN Dihydropyrimi 92.6 1.9 4.2E-05 46.1 13.3 46 40-91 1-47 (299)
194 COG0800 Eda 2-keto-3-deoxy-6-p 92.5 1.3 2.8E-05 45.3 11.1 74 157-238 12-89 (211)
195 PRK13586 1-(5-phosphoribosyl)- 92.5 3.4 7.4E-05 42.8 14.5 166 171-409 33-218 (232)
196 PRK14024 phosphoribosyl isomer 92.4 1.5 3.2E-05 45.5 11.9 123 107-241 77-222 (241)
197 cd01573 modD_like ModD; Quinol 92.4 0.24 5.2E-06 52.5 6.1 82 148-240 171-257 (272)
198 PRK00043 thiE thiamine-phospha 92.4 1.9 4.1E-05 43.1 12.3 68 391-469 113-189 (212)
199 PRK13125 trpA tryptophan synth 92.4 3.1 6.6E-05 43.3 14.2 131 55-189 73-215 (244)
200 PRK00208 thiG thiazole synthas 92.3 1 2.2E-05 47.0 10.2 68 392-469 134-205 (250)
201 PRK01033 imidazole glycerol ph 92.2 4.9 0.00011 42.2 15.5 65 171-241 33-103 (258)
202 PRK00278 trpC indole-3-glycero 92.2 0.84 1.8E-05 48.0 9.8 152 70-241 73-240 (260)
203 PF01729 QRPTase_C: Quinolinat 92.1 0.12 2.5E-06 51.1 3.0 88 146-241 65-155 (169)
204 TIGR00640 acid_CoA_mut_C methy 92.0 0.4 8.7E-06 45.4 6.5 92 347-473 20-113 (132)
205 PF03437 BtpA: BtpA family; I 91.9 2.6 5.7E-05 44.3 13.0 58 400-469 170-228 (254)
206 PRK09427 bifunctional indole-3 91.9 3.2 7E-05 47.2 14.6 158 167-409 165-336 (454)
207 cd07938 DRE_TIM_HMGL 3-hydroxy 91.8 1.2 2.6E-05 47.2 10.5 102 172-278 24-130 (274)
208 PRK04180 pyridoxal biosynthesi 91.8 2.9 6.2E-05 44.7 13.1 70 168-258 83-155 (293)
209 cd01568 QPRTase_NadC Quinolina 91.8 0.32 6.8E-06 51.5 6.0 82 149-241 169-255 (269)
210 cd00564 TMP_TenI Thiamine mono 91.8 9.9 0.00021 36.9 16.3 105 120-241 16-122 (196)
211 TIGR00735 hisF imidazoleglycer 91.7 2.5 5.4E-05 44.1 12.6 121 107-241 76-229 (254)
212 PRK08072 nicotinate-nucleotide 91.5 0.4 8.6E-06 51.1 6.4 84 147-241 174-260 (277)
213 cd04722 TIM_phosphate_binding 91.3 8.6 0.00019 36.8 15.1 65 398-468 132-199 (200)
214 TIGR01163 rpe ribulose-phospha 91.2 2.4 5.1E-05 42.3 11.5 115 346-469 69-194 (210)
215 PRK01033 imidazole glycerol ph 91.2 1.9 4.2E-05 45.2 11.2 121 107-241 76-226 (258)
216 PRK06543 nicotinate-nucleotide 91.1 1 2.3E-05 48.0 9.1 85 146-241 178-265 (281)
217 TIGR00259 thylakoid_BtpA membr 91.1 3.3 7.2E-05 43.7 12.7 61 399-469 167-228 (257)
218 PLN02495 oxidoreductase, actin 91.1 3.8 8.2E-05 45.7 13.8 95 145-240 98-213 (385)
219 PLN02334 ribulose-phosphate 3- 91.0 2.7 5.9E-05 43.1 11.9 71 393-469 129-203 (229)
220 CHL00200 trpA tryptophan synth 91.0 4.3 9.2E-05 43.0 13.5 122 344-469 107-232 (263)
221 cd00564 TMP_TenI Thiamine mono 90.9 0.43 9.3E-06 46.6 5.7 78 158-241 92-178 (196)
222 cd00429 RPE Ribulose-5-phospha 90.8 2.6 5.7E-05 41.9 11.3 114 346-469 70-195 (211)
223 PRK07565 dihydroorotate dehydr 90.5 1.2 2.6E-05 48.5 9.2 26 444-469 244-269 (334)
224 TIGR00078 nadC nicotinate-nucl 90.5 0.57 1.2E-05 49.6 6.5 84 147-241 164-250 (265)
225 PRK00507 deoxyribose-phosphate 90.3 1.2 2.6E-05 45.9 8.4 112 121-242 79-207 (221)
226 PF01207 Dus: Dihydrouridine s 90.2 1.2 2.5E-05 48.1 8.7 172 61-241 2-213 (309)
227 cd04726 KGPDC_HPS 3-Keto-L-gul 90.2 4.1 8.8E-05 40.4 12.0 110 347-469 68-187 (202)
228 cd01572 QPRTase Quinolinate ph 90.1 1.4 3E-05 46.7 9.0 83 148-241 169-254 (268)
229 PRK13111 trpA tryptophan synth 90.1 5.3 0.00011 42.2 13.2 124 342-469 103-229 (258)
230 cd00945 Aldolase_Class_I Class 90.1 2.7 5.9E-05 40.9 10.6 162 66-241 12-201 (201)
231 cd04731 HisF The cyclase subun 90.1 3 6.5E-05 43.0 11.3 65 170-241 151-223 (243)
232 PRK06559 nicotinate-nucleotide 90.0 1.4 3.1E-05 47.1 9.0 85 146-241 182-269 (290)
233 PRK05581 ribulose-phosphate 3- 89.9 3.1 6.8E-05 41.9 11.1 25 444-469 175-199 (220)
234 TIGR00736 nifR3_rel_arch TIM-b 89.8 2 4.2E-05 44.7 9.6 64 398-469 157-221 (231)
235 cd04740 DHOD_1B_like Dihydroor 89.8 9.2 0.0002 40.6 15.1 25 217-241 16-41 (296)
236 PRK08195 4-hyroxy-2-oxovalerat 89.7 5.7 0.00012 43.5 13.6 93 172-279 29-132 (337)
237 PRK00043 thiE thiamine-phospha 89.7 0.6 1.3E-05 46.7 5.7 74 162-241 105-188 (212)
238 cd04739 DHOD_like Dihydroorota 89.7 9 0.0002 41.6 15.1 25 217-241 18-43 (325)
239 PRK06106 nicotinate-nucleotide 89.5 1.6 3.5E-05 46.5 8.9 84 147-241 180-266 (281)
240 PRK02083 imidazole glycerol ph 89.4 3.8 8.3E-05 42.6 11.5 121 107-241 76-227 (253)
241 PRK08385 nicotinate-nucleotide 89.3 1.7 3.6E-05 46.4 8.8 87 146-241 168-259 (278)
242 cd02803 OYE_like_FMN_family Ol 89.3 3.9 8.4E-05 44.0 11.9 111 131-241 154-311 (327)
243 PF02548 Pantoate_transf: Keto 89.2 11 0.00023 39.9 14.5 32 449-482 183-214 (261)
244 PRK04128 1-(5-phosphoribosyl)- 89.2 6 0.00013 40.9 12.6 25 217-241 78-102 (228)
245 PRK14114 1-(5-phosphoribosyl)- 89.1 8.4 0.00018 40.2 13.7 62 171-241 33-102 (241)
246 TIGR00737 nifR3_yhdG putative 88.9 3.4 7.3E-05 44.6 11.1 24 445-469 198-223 (319)
247 cd04728 ThiG Thiazole synthase 88.9 1.9 4.1E-05 45.1 8.6 68 392-469 134-205 (248)
248 cd07941 DRE_TIM_LeuA3 Desulfob 88.8 2 4.2E-05 45.5 9.0 53 223-276 80-133 (273)
249 PRK11750 gltB glutamate syntha 88.8 0.35 7.6E-06 61.2 3.8 105 363-468 976-1096(1485)
250 PRK13587 1-(5-phosphoribosyl)- 88.7 7 0.00015 40.5 12.7 120 107-241 78-221 (234)
251 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.6 3.7 8E-05 43.5 10.9 40 223-276 93-132 (275)
252 PRK08227 autoinducer 2 aldolas 88.5 2.3 5E-05 45.0 9.1 46 227-280 100-145 (264)
253 PRK04302 triosephosphate isome 88.3 2.9 6.2E-05 42.8 9.6 133 332-469 56-203 (223)
254 PF01729 QRPTase_C: Quinolinat 88.0 1.8 4E-05 42.7 7.6 68 118-189 89-156 (169)
255 PF05690 ThiG: Thiazole biosyn 87.9 8.8 0.00019 40.0 12.6 123 131-271 90-227 (247)
256 cd07939 DRE_TIM_NifV Streptomy 87.9 1.7 3.6E-05 45.6 7.7 95 172-276 24-124 (259)
257 TIGR00222 panB 3-methyl-2-oxob 87.8 8.1 0.00018 40.9 12.6 166 218-482 19-212 (263)
258 TIGR01334 modD putative molybd 87.7 2.1 4.6E-05 45.6 8.3 87 146-241 174-263 (277)
259 TIGR00693 thiE thiamine-phosph 87.6 13 0.00029 36.7 13.7 73 389-469 103-181 (196)
260 PF05690 ThiG: Thiazole biosyn 87.4 1.1 2.4E-05 46.5 5.7 66 396-469 138-205 (247)
261 PRK00366 ispG 4-hydroxy-3-meth 87.4 5 0.00011 44.0 11.0 138 120-310 46-187 (360)
262 cd02810 DHOD_DHPD_FMN Dihydroo 87.4 1.7 3.7E-05 45.9 7.5 26 444-469 248-273 (289)
263 PRK05848 nicotinate-nucleotide 87.4 1.9 4.1E-05 45.9 7.7 68 118-189 191-258 (273)
264 PRK14041 oxaloacetate decarbox 87.3 5.2 0.00011 45.8 11.6 39 227-279 101-139 (467)
265 cd07948 DRE_TIM_HCS Saccharomy 87.3 2 4.4E-05 45.3 7.9 94 172-275 26-125 (262)
266 TIGR03217 4OH_2_O_val_ald 4-hy 87.3 10 0.00022 41.4 13.5 90 172-277 28-129 (333)
267 PRK13957 indole-3-glycerol-pho 87.1 7.5 0.00016 40.8 11.8 62 171-240 64-130 (247)
268 TIGR00693 thiE thiamine-phosph 87.1 1.2 2.5E-05 44.3 5.7 76 161-241 96-180 (196)
269 COG0106 HisA Phosphoribosylfor 86.9 20 0.00043 37.6 14.5 165 171-409 34-221 (241)
270 cd04724 Tryptophan_synthase_al 86.9 3.9 8.4E-05 42.5 9.6 114 121-241 96-215 (242)
271 cd02071 MM_CoA_mut_B12_BD meth 86.9 2 4.3E-05 39.8 6.7 91 347-473 17-110 (122)
272 PRK13111 trpA tryptophan synth 86.8 10 0.00022 40.1 12.7 127 54-189 87-229 (258)
273 PRK13397 3-deoxy-7-phosphohept 86.7 4.3 9.2E-05 42.7 9.8 61 262-342 29-89 (250)
274 PLN02617 imidazole glycerol ph 86.7 9.7 0.00021 44.4 13.6 67 346-414 441-517 (538)
275 cd00959 DeoC 2-deoxyribose-5-p 86.6 6.6 0.00014 39.6 10.9 111 121-238 74-200 (203)
276 PF00977 His_biosynth: Histidi 86.5 3 6.5E-05 43.0 8.5 167 171-409 32-220 (229)
277 cd00405 PRAI Phosphoribosylant 86.5 15 0.00033 36.7 13.4 121 332-469 53-182 (203)
278 PRK07428 nicotinate-nucleotide 86.2 2.4 5.1E-05 45.5 7.7 71 115-189 202-272 (288)
279 PRK06096 molybdenum transport 86.1 3.3 7.1E-05 44.3 8.7 87 146-241 175-264 (284)
280 TIGR03128 RuMP_HxlA 3-hexulose 85.8 4 8.6E-05 40.8 8.8 110 121-241 68-186 (206)
281 CHL00162 thiG thiamin biosynth 85.7 2.1 4.6E-05 44.9 6.8 110 145-271 124-241 (267)
282 COG0106 HisA Phosphoribosylfor 85.7 8 0.00017 40.4 11.0 42 148-189 64-105 (241)
283 PRK05742 nicotinate-nucleotide 85.7 4 8.7E-05 43.5 9.1 82 148-241 177-261 (277)
284 COG0157 NadC Nicotinate-nucleo 85.1 4 8.7E-05 43.4 8.6 85 146-241 173-262 (280)
285 PRK08508 biotin synthase; Prov 85.1 6.3 0.00014 41.8 10.3 57 218-277 96-152 (279)
286 PF00290 Trp_syntA: Tryptophan 85.0 7.6 0.00017 41.0 10.7 126 55-189 86-227 (259)
287 cd07943 DRE_TIM_HOA 4-hydroxy- 85.0 4.7 0.0001 42.2 9.2 42 221-276 85-126 (263)
288 TIGR00126 deoC deoxyribose-pho 84.3 7.4 0.00016 39.9 10.0 111 120-238 74-201 (211)
289 PRK07896 nicotinate-nucleotide 84.2 3.8 8.2E-05 44.0 8.1 67 118-188 208-274 (289)
290 PRK13586 1-(5-phosphoribosyl)- 84.0 15 0.00032 38.2 12.2 120 107-241 75-218 (232)
291 COG0036 Rpe Pentose-5-phosphat 84.0 18 0.00039 37.3 12.5 116 70-189 74-198 (220)
292 PRK06852 aldolase; Validated 84.0 2.8 6E-05 45.3 7.0 46 227-280 121-172 (304)
293 PRK09016 quinolinate phosphori 83.9 5.1 0.00011 43.1 9.0 83 147-241 195-280 (296)
294 COG0352 ThiE Thiamine monophos 83.9 4.4 9.6E-05 41.5 8.1 98 131-240 81-185 (211)
295 TIGR00612 ispG_gcpE 1-hydroxy- 83.8 9 0.0002 41.8 10.7 138 120-310 38-178 (346)
296 cd04726 KGPDC_HPS 3-Keto-L-gul 83.7 15 0.00033 36.4 11.8 126 56-188 53-186 (202)
297 PRK08005 epimerase; Validated 83.6 5.2 0.00011 40.9 8.6 114 70-189 71-192 (210)
298 COG0214 SNZ1 Pyridoxine biosyn 83.6 0.97 2.1E-05 46.6 3.2 97 162-268 126-257 (296)
299 COG2022 ThiG Uncharacterized e 83.6 3.4 7.5E-05 42.8 7.1 185 245-469 12-212 (262)
300 PRK04302 triosephosphate isome 83.5 5.8 0.00012 40.6 8.9 113 122-241 78-202 (223)
301 COG0352 ThiE Thiamine monophos 83.4 53 0.0011 33.7 15.7 125 119-266 24-151 (211)
302 PRK11815 tRNA-dihydrouridine s 83.4 14 0.00031 40.2 12.4 70 398-469 160-234 (333)
303 PRK07028 bifunctional hexulose 83.3 14 0.0003 41.6 12.7 110 121-241 73-190 (430)
304 PF00977 His_biosynth: Histidi 83.3 5.6 0.00012 41.0 8.7 43 147-189 61-103 (229)
305 COG2185 Sbm Methylmalonyl-CoA 83.1 3 6.4E-05 40.2 6.1 26 444-473 98-123 (143)
306 TIGR00742 yjbN tRNA dihydrouri 83.1 9.6 0.00021 41.4 10.8 64 398-469 150-224 (318)
307 cd03174 DRE_TIM_metallolyase D 83.0 8 0.00017 39.9 9.9 102 172-277 23-130 (265)
308 TIGR02090 LEU1_arch isopropylm 82.5 3.5 7.5E-05 45.5 7.3 94 172-275 26-125 (363)
309 PRK08745 ribulose-phosphate 3- 82.3 25 0.00053 36.4 13.0 116 70-189 75-200 (223)
310 PRK06106 nicotinate-nucleotide 82.3 5.6 0.00012 42.5 8.4 75 343-420 201-275 (281)
311 PRK15452 putative protease; Pr 82.2 3.7 8E-05 46.6 7.5 137 221-379 10-158 (443)
312 cd04723 HisA_HisF Phosphoribos 82.2 15 0.00033 37.9 11.5 167 57-241 25-218 (233)
313 PRK06978 nicotinate-nucleotide 82.2 6.5 0.00014 42.3 8.9 83 147-241 192-277 (294)
314 PF01884 PcrB: PcrB family; I 81.9 6.6 0.00014 40.8 8.5 58 131-188 153-211 (230)
315 PRK04128 1-(5-phosphoribosyl)- 81.7 9.2 0.0002 39.5 9.7 27 215-241 183-211 (228)
316 PRK11840 bifunctional sulfur c 81.3 15 0.00032 40.1 11.2 87 168-271 205-301 (326)
317 PRK14114 1-(5-phosphoribosyl)- 81.2 13 0.00029 38.7 10.7 42 147-189 62-103 (241)
318 cd07944 DRE_TIM_HOA_like 4-hyd 81.1 35 0.00076 36.0 13.9 90 172-275 24-122 (266)
319 PRK06543 nicotinate-nucleotide 81.0 7 0.00015 41.8 8.6 77 343-422 200-276 (281)
320 PRK12331 oxaloacetate decarbox 81.0 15 0.00032 41.9 11.7 90 172-277 30-138 (448)
321 PF00218 IGPS: Indole-3-glycer 80.6 15 0.00032 38.8 10.8 124 333-469 110-239 (254)
322 TIGR01949 AroFGH_arch predicte 80.5 5.3 0.00011 41.8 7.5 47 226-280 95-141 (258)
323 PRK11840 bifunctional sulfur c 80.5 12 0.00026 40.7 10.3 27 443-469 253-279 (326)
324 TIGR01334 modD putative molybd 80.1 6.6 0.00014 41.9 8.1 67 118-188 197-263 (277)
325 cd01573 modD_like ModD; Quinol 79.7 5.8 0.00012 42.2 7.5 67 117-187 191-257 (272)
326 KOG3111|consensus 79.7 2.4 5.2E-05 42.7 4.3 68 393-469 126-198 (224)
327 TIGR02660 nifV_homocitr homoci 79.6 8.2 0.00018 42.6 9.0 94 172-275 27-126 (365)
328 PRK08385 nicotinate-nucleotide 79.6 7.2 0.00016 41.7 8.2 67 118-188 191-259 (278)
329 TIGR00640 acid_CoA_mut_C methy 79.1 20 0.00043 34.0 10.2 88 70-186 19-110 (132)
330 cd02932 OYE_YqiM_FMN Old yello 78.9 15 0.00033 39.9 10.6 22 224-245 157-178 (336)
331 PRK10415 tRNA-dihydrouridine s 78.6 16 0.00034 39.7 10.7 30 224-257 80-109 (321)
332 PRK06559 nicotinate-nucleotide 78.6 9.5 0.00021 41.0 8.7 76 344-422 205-280 (290)
333 cd07940 DRE_TIM_IPMS 2-isoprop 78.4 8.5 0.00018 40.5 8.3 193 172-473 24-226 (268)
334 cd02931 ER_like_FMN Enoate red 78.3 26 0.00057 39.0 12.5 70 172-241 256-335 (382)
335 cd00429 RPE Ribulose-5-phospha 77.9 32 0.00069 34.1 11.9 114 71-189 71-195 (211)
336 KOG1606|consensus 77.9 2 4.4E-05 43.7 3.2 81 162-243 127-240 (296)
337 PRK06806 fructose-bisphosphate 77.8 13 0.00029 39.6 9.6 127 332-468 74-230 (281)
338 PF04481 DUF561: Protein of un 77.7 18 0.00038 37.4 9.8 55 172-241 31-88 (242)
339 PRK13802 bifunctional indole-3 77.6 8.4 0.00018 46.2 8.8 68 391-469 169-241 (695)
340 COG0159 TrpA Tryptophan syntha 77.4 31 0.00067 36.6 11.9 129 55-189 93-234 (265)
341 PLN02716 nicotinate-nucleotide 77.2 13 0.00028 40.4 9.2 90 147-241 186-290 (308)
342 PF02581 TMP-TENI: Thiamine mo 77.1 4.9 0.00011 39.6 5.7 97 131-239 72-175 (180)
343 PRK06096 molybdenum transport 76.9 9.1 0.0002 41.0 8.0 67 118-188 198-264 (284)
344 KOG2335|consensus 76.8 9 0.0002 42.1 8.0 126 145-275 127-267 (358)
345 cd01568 QPRTase_NadC Quinolina 76.7 6.4 0.00014 41.7 6.8 66 117-187 189-254 (269)
346 PRK09016 quinolinate phosphori 76.5 11 0.00024 40.5 8.6 76 344-422 216-291 (296)
347 PRK11858 aksA trans-homoaconit 76.4 9.6 0.00021 42.3 8.4 57 218-275 72-129 (378)
348 PRK06978 nicotinate-nucleotide 76.3 12 0.00026 40.3 8.7 76 344-422 213-288 (294)
349 PLN02591 tryptophan synthase 76.2 15 0.00032 38.6 9.2 112 122-241 99-218 (250)
350 cd02932 OYE_YqiM_FMN Old yello 76.1 26 0.00057 38.0 11.6 69 172-241 245-320 (336)
351 PRK08091 ribulose-phosphate 3- 75.6 16 0.00034 38.0 9.0 118 69-189 80-208 (228)
352 COG0135 TrpF Phosphoribosylant 75.5 74 0.0016 32.7 13.7 156 67-241 9-183 (208)
353 PRK08883 ribulose-phosphate 3- 75.5 9.8 0.00021 39.1 7.6 116 70-189 71-196 (220)
354 TIGR01037 pyrD_sub1_fam dihydr 75.4 6.1 0.00013 42.1 6.3 24 445-469 240-264 (300)
355 TIGR03128 RuMP_HxlA 3-hexulose 75.3 40 0.00086 33.6 11.8 67 120-189 117-187 (206)
356 cd00959 DeoC 2-deoxyribose-5-p 75.1 8.8 0.00019 38.7 7.0 42 226-272 74-115 (203)
357 PRK00311 panB 3-methyl-2-oxobu 74.9 26 0.00057 37.1 10.7 70 115-190 91-183 (264)
358 cd04734 OYE_like_3_FMN Old yel 74.8 27 0.00059 38.2 11.2 111 131-241 154-315 (343)
359 TIGR01769 GGGP geranylgeranylg 74.1 15 0.00032 37.6 8.3 58 130-187 146-204 (205)
360 PRK07259 dihydroorotate dehydr 74.1 5.5 0.00012 42.5 5.6 25 444-469 239-264 (301)
361 COG0274 DeoC Deoxyribose-phosp 74.1 14 0.0003 38.3 8.1 112 121-242 82-211 (228)
362 cd02067 B12-binding B12 bindin 74.0 11 0.00023 34.4 6.7 87 347-465 17-106 (119)
363 cd08205 RuBisCO_IV_RLP Ribulos 73.7 23 0.00051 39.2 10.5 73 344-416 268-354 (367)
364 cd07945 DRE_TIM_CMS Leptospira 73.4 11 0.00024 40.2 7.6 152 225-480 78-237 (280)
365 TIGR01769 GGGP geranylgeranylg 73.4 9.2 0.0002 39.0 6.7 61 174-241 140-205 (205)
366 PRK07695 transcriptional regul 73.2 1E+02 0.0022 30.7 16.3 100 124-241 22-122 (201)
367 cd02801 DUS_like_FMN Dihydrour 73.1 64 0.0014 32.5 12.9 65 122-188 144-213 (231)
368 COG0826 Collagenase and relate 73.0 22 0.00047 39.2 9.9 49 224-277 16-64 (347)
369 PRK00366 ispG 4-hydroxy-3-meth 72.9 13 0.00028 41.0 7.9 81 170-271 44-129 (360)
370 cd00958 DhnA Class I fructose- 72.8 23 0.00051 36.1 9.7 58 174-241 149-214 (235)
371 PRK06512 thiamine-phosphate py 72.7 12 0.00026 38.5 7.5 73 162-240 111-191 (221)
372 PRK07896 nicotinate-nucleotide 72.7 14 0.0003 39.7 8.1 66 344-409 207-274 (289)
373 PRK11613 folP dihydropteroate 72.1 7.7 0.00017 41.5 6.0 69 396-465 45-114 (282)
374 cd02072 Glm_B12_BD B12 binding 72.1 15 0.00033 34.8 7.3 26 351-376 21-48 (128)
375 PRK14040 oxaloacetate decarbox 72.1 30 0.00066 40.9 11.4 188 174-480 33-240 (593)
376 PRK07226 fructose-bisphosphate 72.0 34 0.00074 36.0 10.8 55 174-241 166-231 (267)
377 PRK10550 tRNA-dihydrouridine s 71.8 32 0.0007 37.3 10.8 63 399-469 158-225 (312)
378 PRK08883 ribulose-phosphate 3- 71.8 33 0.00072 35.3 10.4 111 346-469 71-196 (220)
379 PRK09722 allulose-6-phosphate 71.7 54 0.0012 34.1 11.9 114 70-189 72-198 (229)
380 PF00682 HMGL-like: HMGL-like 71.7 68 0.0015 32.7 12.8 63 122-187 20-86 (237)
381 COG0821 gcpE 1-hydroxy-2-methy 71.7 44 0.00095 36.6 11.4 138 120-310 40-180 (361)
382 cd02812 PcrB_like PcrB_like pr 71.6 13 0.00028 38.4 7.3 63 125-189 142-205 (219)
383 PF00218 IGPS: Indole-3-glycer 71.4 34 0.00073 36.2 10.5 72 167-241 164-238 (254)
384 PRK02615 thiamine-phosphate py 71.2 1.4E+02 0.0031 32.9 15.7 104 119-241 160-267 (347)
385 TIGR01768 GGGP-family geranylg 71.0 19 0.00042 37.2 8.4 59 131-189 149-209 (223)
386 cd04735 OYE_like_4_FMN Old yel 71.0 15 0.00033 40.3 8.3 68 172-241 239-313 (353)
387 cd00377 ICL_PEPM Members of th 70.8 54 0.0012 34.2 11.9 112 161-272 9-137 (243)
388 PRK13753 dihydropteroate synth 70.8 8.3 0.00018 41.2 5.9 69 396-466 32-101 (279)
389 PRK08255 salicylyl-CoA 5-hydro 70.7 30 0.00065 42.0 11.4 108 131-241 564-717 (765)
390 PRK13523 NADPH dehydrogenase N 70.6 18 0.00039 39.6 8.6 108 131-241 155-305 (337)
391 PRK13958 N-(5'-phosphoribosyl) 70.5 94 0.002 31.6 13.2 156 68-240 9-181 (207)
392 PRK05286 dihydroorotate dehydr 70.2 9.5 0.00021 41.8 6.4 26 444-469 294-319 (344)
393 TIGR01859 fruc_bis_ald_ fructo 70.1 25 0.00055 37.5 9.4 127 333-468 75-230 (282)
394 COG1646 Predicted phosphate-bi 70.1 13 0.00028 38.7 6.8 55 131-187 164-219 (240)
395 PRK14057 epimerase; Provisiona 69.9 17 0.00036 38.4 7.8 117 70-189 88-222 (254)
396 TIGR01919 hisA-trpF 1-(5-phosp 69.8 55 0.0012 34.2 11.6 132 215-408 75-224 (243)
397 COG0434 SgcQ Predicted TIM-bar 69.0 60 0.0013 34.1 11.3 169 172-468 38-232 (263)
398 PF00682 HMGL-like: HMGL-like 68.0 62 0.0013 33.0 11.5 90 121-234 142-237 (237)
399 TIGR01108 oadA oxaloacetate de 68.0 58 0.0013 38.4 12.5 190 172-480 25-234 (582)
400 cd00956 Transaldolase_FSA Tran 67.8 24 0.00051 36.1 8.3 88 145-241 88-185 (211)
401 cd02930 DCR_FMN 2,4-dienoyl-Co 67.7 24 0.00053 38.6 9.0 69 172-241 228-306 (353)
402 PTZ00170 D-ribulose-5-phosphat 67.7 33 0.00071 35.4 9.4 127 333-469 66-202 (228)
403 PRK00915 2-isopropylmalate syn 67.7 17 0.00037 42.1 8.0 192 172-473 30-233 (513)
404 PLN02446 (5-phosphoribosyl)-5- 67.5 60 0.0013 34.5 11.3 118 107-241 85-238 (262)
405 TIGR01859 fruc_bis_ald_ fructo 67.4 51 0.0011 35.2 11.0 68 169-241 153-230 (282)
406 KOG2335|consensus 67.3 24 0.00053 38.8 8.6 110 351-469 111-234 (358)
407 COG0042 tRNA-dihydrouridine sy 67.1 28 0.0006 38.0 9.1 65 395-469 157-229 (323)
408 cd04738 DHOD_2_like Dihydrooro 66.7 7.2 0.00016 42.4 4.5 27 443-469 284-310 (327)
409 PRK02615 thiamine-phosphate py 66.6 24 0.00052 38.9 8.5 75 162-241 241-322 (347)
410 PLN03228 methylthioalkylmalate 66.2 21 0.00047 41.2 8.4 194 172-473 110-323 (503)
411 TIGR00734 hisAF_rel hisA/hisF 66.0 16 0.00034 37.6 6.6 62 173-241 146-213 (221)
412 PRK04169 geranylgeranylglycery 65.9 25 0.00055 36.6 8.1 59 131-189 154-214 (232)
413 TIGR00612 ispG_gcpE 1-hydroxy- 65.6 20 0.00043 39.3 7.4 66 170-247 36-104 (346)
414 cd00956 Transaldolase_FSA Tran 65.5 34 0.00075 34.9 8.9 113 346-468 67-185 (211)
415 COG0159 TrpA Tryptophan syntha 65.2 1E+02 0.0022 32.8 12.5 109 122-241 115-233 (265)
416 PRK08005 epimerase; Validated 65.2 78 0.0017 32.5 11.4 112 346-469 71-192 (210)
417 PRK03512 thiamine-phosphate py 65.0 26 0.00056 35.8 7.9 81 155-240 96-185 (211)
418 PTZ00170 D-ribulose-5-phosphat 65.0 76 0.0016 32.7 11.4 44 145-188 158-201 (228)
419 cd02812 PcrB_like PcrB_like pr 64.8 5.7 0.00012 40.9 3.1 58 174-241 141-204 (219)
420 PRK05581 ribulose-phosphate 3- 64.7 88 0.0019 31.3 11.7 67 119-189 122-199 (220)
421 PRK10128 2-keto-3-deoxy-L-rham 64.5 29 0.00062 36.9 8.4 80 167-272 25-110 (267)
422 TIGR01163 rpe ribulose-phospha 64.5 97 0.0021 30.7 11.9 126 56-189 56-194 (210)
423 PRK08318 dihydropyrimidine deh 64.4 9.4 0.0002 42.8 5.0 38 39-83 2-40 (420)
424 PF02581 TMP-TENI: Thiamine mo 64.2 1.5E+02 0.0033 29.1 15.7 105 118-241 14-122 (180)
425 PRK13307 bifunctional formalde 63.5 1.1E+02 0.0024 34.4 13.0 68 119-189 290-359 (391)
426 PF00834 Ribul_P_3_epim: Ribul 63.3 16 0.00035 37.1 6.0 171 224-468 15-194 (201)
427 PRK02227 hypothetical protein; 63.3 36 0.00079 35.6 8.6 135 115-259 6-161 (238)
428 PF09370 TIM-br_sig_trns: TIM- 63.2 13 0.00028 39.4 5.4 92 147-241 139-246 (268)
429 PLN02716 nicotinate-nucleotide 63.1 33 0.00072 37.2 8.6 76 343-421 210-300 (308)
430 TIGR00126 deoC deoxyribose-pho 62.6 18 0.00039 37.1 6.2 67 387-465 126-201 (211)
431 PRK09427 bifunctional indole-3 62.4 2.9E+02 0.0063 31.7 18.3 80 151-238 200-281 (454)
432 TIGR00259 thylakoid_BtpA membr 62.3 7.5 0.00016 41.1 3.5 60 171-241 160-227 (257)
433 CHL00162 thiG thiamin biosynth 61.8 27 0.00058 36.9 7.3 27 443-469 193-219 (267)
434 cd04733 OYE_like_2_FMN Old yel 61.2 58 0.0013 35.5 10.3 70 172-241 240-322 (338)
435 cd00377 ICL_PEPM Members of th 60.9 54 0.0012 34.1 9.6 38 217-261 12-49 (243)
436 cd06557 KPHMT-like Ketopantoat 60.8 63 0.0014 34.1 10.0 66 119-190 93-180 (254)
437 PRK13958 N-(5'-phosphoribosyl) 60.8 35 0.00076 34.7 7.9 67 343-409 8-82 (207)
438 PRK12330 oxaloacetate decarbox 60.0 52 0.0011 38.1 10.0 21 226-246 102-122 (499)
439 TIGR01362 KDO8P_synth 3-deoxy- 59.5 77 0.0017 33.6 10.2 30 346-375 106-137 (258)
440 TIGR03239 GarL 2-dehydro-3-deo 59.5 22 0.00048 37.3 6.4 80 167-272 19-104 (249)
441 cd02930 DCR_FMN 2,4-dienoyl-Co 59.4 57 0.0012 35.8 9.9 34 436-469 271-307 (353)
442 PRK08255 salicylyl-CoA 5-hydro 58.8 67 0.0014 39.1 11.2 68 399-469 648-718 (765)
443 PRK12595 bifunctional 3-deoxy- 58.5 1.5E+02 0.0032 33.0 12.8 106 225-374 136-245 (360)
444 COG1902 NemA NADH:flavin oxido 58.3 1.4E+02 0.003 33.2 12.7 72 115-187 235-317 (363)
445 PRK01222 N-(5'-phosphoribosyl) 58.2 2.2E+02 0.0047 29.0 13.7 153 68-240 11-182 (210)
446 cd01572 QPRTase Quinolinate ph 57.8 45 0.00098 35.4 8.4 66 343-409 189-254 (268)
447 cd02070 corrinoid_protein_B12- 57.7 26 0.00056 35.2 6.4 30 347-376 100-131 (201)
448 PRK13802 bifunctional indole-3 57.6 50 0.0011 39.8 9.6 72 167-241 166-240 (695)
449 cd00945 Aldolase_Class_I Class 57.1 32 0.00068 33.4 6.8 159 224-408 16-200 (201)
450 PRK08999 hypothetical protein; 57.0 25 0.00055 37.5 6.6 72 162-238 227-305 (312)
451 PLN02389 biotin synthase 57.0 85 0.0018 35.1 10.8 58 220-280 174-231 (379)
452 PRK09426 methylmalonyl-CoA mut 56.9 23 0.00049 42.8 6.7 62 399-473 630-693 (714)
453 PRK13398 3-deoxy-7-phosphohept 56.7 1.7E+02 0.0037 31.0 12.5 52 224-280 44-96 (266)
454 COG1891 Uncharacterized protei 56.6 42 0.00091 33.6 7.2 50 363-412 162-211 (235)
455 PRK10558 alpha-dehydro-beta-de 56.3 43 0.00092 35.3 7.9 80 167-272 26-111 (256)
456 PF00290 Trp_syntA: Tryptophan 55.6 31 0.00067 36.5 6.7 121 345-469 104-227 (259)
457 PRK12331 oxaloacetate decarbox 55.6 85 0.0018 35.9 10.6 89 120-233 158-252 (448)
458 cd02071 MM_CoA_mut_B12_BD meth 55.5 1.6E+02 0.0035 27.0 10.8 55 132-186 51-107 (122)
459 PRK05742 nicotinate-nucleotide 55.4 52 0.0011 35.2 8.4 76 343-421 196-271 (277)
460 PRK09282 pyruvate carboxylase 55.3 83 0.0018 37.3 10.8 179 172-465 30-226 (592)
461 PRK07315 fructose-bisphosphate 55.3 2E+02 0.0044 30.9 13.0 128 107-241 79-232 (293)
462 PF01791 DeoC: DeoC/LacD famil 55.1 37 0.00081 34.8 7.2 64 172-241 150-230 (236)
463 cd06556 ICL_KPHMT Members of t 54.9 1.2E+02 0.0025 31.8 10.8 60 120-188 93-176 (240)
464 COG0821 gcpE 1-hydroxy-2-methy 54.9 34 0.00075 37.4 6.9 81 170-270 38-121 (361)
465 COG2022 ThiG Uncharacterized e 54.7 52 0.0011 34.4 7.9 67 169-241 139-211 (262)
466 PLN02428 lipoic acid synthase 54.6 2.6E+02 0.0057 30.9 13.9 113 144-280 165-280 (349)
467 PF01207 Dus: Dihydrouridine s 54.4 45 0.00097 36.0 7.9 63 398-469 147-214 (309)
468 PRK12581 oxaloacetate decarbox 54.4 2.4E+02 0.0052 32.5 14.0 89 120-233 167-261 (468)
469 PRK05692 hydroxymethylglutaryl 54.3 1.2E+02 0.0026 32.5 11.0 94 121-233 160-260 (287)
470 COG0119 LeuA Isopropylmalate/h 54.1 1E+02 0.0022 34.9 10.8 52 223-275 78-130 (409)
471 PRK13957 indole-3-glycerol-pho 53.9 1.4E+02 0.0031 31.4 11.2 71 167-241 157-230 (247)
472 PRK08091 ribulose-phosphate 3- 53.8 30 0.00065 36.0 6.1 114 345-469 80-208 (228)
473 PRK12344 putative alpha-isopro 53.6 58 0.0013 37.9 9.1 197 172-473 31-238 (524)
474 COG0059 IlvC Ketol-acid reduct 53.3 3.9 8.5E-05 44.0 -0.4 60 461-544 123-182 (338)
475 TIGR00078 nadC nicotinate-nucl 53.2 53 0.0011 34.8 8.0 64 344-408 186-249 (265)
476 TIGR02320 PEP_mutase phosphoen 53.0 1.9E+02 0.0041 31.1 12.2 180 220-468 15-240 (285)
477 PRK14041 oxaloacetate decarbox 52.5 96 0.0021 35.7 10.5 65 120-187 157-227 (467)
478 COG4981 Enoyl reductase domain 52.2 1.1E+02 0.0025 35.6 10.6 55 35-94 18-75 (717)
479 PRK05283 deoxyribose-phosphate 52.0 25 0.00055 37.2 5.3 111 120-236 87-219 (257)
480 PRK02261 methylaspartate mutas 51.9 44 0.00095 31.8 6.5 29 348-376 22-52 (137)
481 PRK06512 thiamine-phosphate py 51.7 30 0.00066 35.6 5.8 68 389-468 118-192 (221)
482 PRK12330 oxaloacetate decarbox 51.5 1.2E+02 0.0025 35.4 10.9 65 121-187 160-231 (499)
483 cd07943 DRE_TIM_HOA 4-hydroxy- 51.4 1.5E+02 0.0033 30.9 11.2 93 115-232 139-239 (263)
484 PF04551 GcpE: GcpE protein; 51.4 74 0.0016 35.2 8.8 136 120-310 35-187 (359)
485 COG5016 Pyruvate/oxaloacetate 51.2 47 0.001 37.3 7.3 67 120-189 160-232 (472)
486 cd02933 OYE_like_FMN Old yello 50.9 1.7E+02 0.0038 32.0 11.9 64 172-241 245-314 (338)
487 TIGR01949 AroFGH_arch predicte 50.8 12 0.00027 39.0 2.9 55 174-241 162-227 (258)
488 cd07938 DRE_TIM_HMGL 3-hydroxy 50.8 1.5E+02 0.0032 31.5 11.0 64 122-187 155-224 (274)
489 PRK09389 (R)-citramalate synth 50.6 91 0.002 36.0 10.0 94 172-275 28-127 (488)
490 PRK04169 geranylgeranylglycery 50.5 13 0.00029 38.6 3.0 25 217-241 189-213 (232)
491 KOG4175|consensus 50.2 3E+02 0.0064 28.4 12.1 130 51-189 90-236 (268)
492 COG0107 HisF Imidazoleglycerol 50.1 32 0.0007 35.9 5.5 86 171-279 33-125 (256)
493 TIGR02129 hisA_euk phosphoribo 50.0 33 0.00072 36.2 5.8 57 172-241 42-104 (253)
494 PRK00507 deoxyribose-phosphate 50.0 52 0.0011 33.9 7.2 70 114-185 133-205 (221)
495 PF02310 B12-binding: B12 bind 49.9 67 0.0015 28.7 7.3 56 133-188 53-111 (121)
496 PRK05198 2-dehydro-3-deoxyphos 49.9 1.5E+02 0.0032 31.6 10.5 30 346-375 114-145 (264)
497 COG1954 GlpP Glycerol-3-phosph 49.6 97 0.0021 31.0 8.5 106 118-238 36-170 (181)
498 PF01884 PcrB: PcrB family; I 49.6 12 0.00026 38.9 2.5 25 217-241 187-211 (230)
499 PRK07028 bifunctional hexulose 49.5 1.7E+02 0.0038 32.9 12.0 67 119-188 121-190 (430)
500 COG2185 Sbm Methylmalonyl-CoA 49.1 77 0.0017 30.7 7.6 99 59-186 15-120 (143)
No 1
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-90 Score=724.49 Aligned_cols=328 Identities=39% Similarity=0.608 Sum_probs=300.2
Q ss_pred ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC
Q psy3862 287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT 366 (671)
Q Consensus 287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~ 366 (671)
|||++|.+||||||||+|+||+++||+||||+++|+|+||++.|+++||||||||||++++||++|+++|+|++||||++
T Consensus 1 ~~i~~~~~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~ 80 (346)
T PRK05096 1 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYS 80 (346)
T ss_pred CcccccCCCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-ccccceeeecccChhhH---HHHHH--cCCcEEEEcccccccccccccccccccccccccccccccc
Q psy3862 367 LEEWKAFAVQNP-DVIKHVADGGCTSPGDV---AKAMG--AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL 440 (671)
Q Consensus 367 ~e~~~~~v~~~~-~~~~~v~~~~~~~~~~~---~~l~~--aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (671)
+|+|++|+++.+ +...++..+.+++++|+ ++|++ +|+|+|||| +|||||++++++++.++..||.++
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD-~AhGhs~~~i~~ik~ik~~~P~~~------ 153 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICID-VANGYSEHFVQFVAKAREAWPDKT------ 153 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEE-CCCCcHHHHHHHHHHHHHhCCCCc------
Confidence 999999998865 55677777888887655 44577 599999999 999999999999999999999884
Q ss_pred CceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCC
Q psy3862 441 GGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEG 516 (671)
Q Consensus 441 ~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G 516 (671)
|++|||+|+++++ ++++|||+||||+ ||| |+||||++ +|+|+||+||+++|+.++++| .++||
T Consensus 154 ---vIaGNV~T~e~a~~Li~aGAD~vKVGI-GpG-SiCtTr~v--------tGvG~PQltAV~~~a~~a~~~gvpiIADG 220 (346)
T PRK05096 154 ---ICAGNVVTGEMVEELILSGADIVKVGI-GPG-SVCTTRVK--------TGVGYPQLSAVIECADAAHGLGGQIVSDG 220 (346)
T ss_pred ---EEEecccCHHHHHHHHHcCCCEEEEcc-cCC-ccccCccc--------cccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence 6899999999999 5699999999996 999 99999875 689999999999999988877 36777
Q ss_pred ceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccc
Q psy3862 517 KTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASK 591 (671)
Q Consensus 517 ~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s 591 (671)
+ |+++|||+|||+ ||||+||||++|+||+++. .+| +++|.||||+|
T Consensus 221 G---i~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~-------------------------~~G-~~~K~yrGMgS 271 (346)
T PRK05096 221 G---CTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVE-------------------------ENG-EKFMLFYGMSS 271 (346)
T ss_pred C---cccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEE-------------------------ECC-EEEEEEecccc
Confidence 5 799999999999 9999999999999999522 235 57899999999
Q ss_pred ccccccc-cccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862 592 LKELPRR-ATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669 (671)
Q Consensus 592 ~~a~~~~-~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~ 669 (671)
..||+++ ++.+|| ++|||++.+||||||++++|++|+|||||+|+|+|+++|+|||+|++|||||+|+|+||
T Consensus 272 ~~Am~~~~g~~~ry------~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~q~n~~~ 344 (346)
T PRK05096 272 ESAMKRHVGGVAEY------RAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF 344 (346)
T ss_pred HHHHhhccCccccc------ccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEEChhhcccc
Confidence 9999853 444455 57999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=100.00 E-value=1.5e-85 Score=687.96 Aligned_cols=327 Identities=44% Similarity=0.662 Sum_probs=295.9
Q ss_pred eeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCH
Q psy3862 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL 367 (671)
Q Consensus 288 ~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~ 367 (671)
|||+|++||||||||+|+||+++||+||||+++|+|+||++.|+++|||||||||||+++||++|+++|+|++||||+++
T Consensus 1 ~~~~~~~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~ 80 (343)
T TIGR01305 1 RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSV 80 (343)
T ss_pred CccccCCCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcccccceeeecccChhhH---HHHHHcC--CcEEEEccccccccccccccccccccccccccccccccC
Q psy3862 368 EEWKAFAVQ-NPDVIKHVADGGCTSPGDV---AKAMGAG--ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG 441 (671)
Q Consensus 368 e~~~~~v~~-~~~~~~~v~~~~~~~~~~~---~~l~~aG--~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (671)
|+|++|+++ .++...++..+.+++++|+ ++|+++| +|+|||| +|||||+++++++++++..||.+
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD-~AhGhs~~~i~~ik~ir~~~p~~-------- 151 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLD-VANGYSEHFVEFVKLVREAFPEH-------- 151 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEE-CCCCcHHHHHHHHHHHHhhCCCC--------
Confidence 999999987 5676677777888887554 5558885 9999999 99999999999998888887766
Q ss_pred ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCc
Q psy3862 442 GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGK 517 (671)
Q Consensus 442 ~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~ 517 (671)
.|++|||.|++.++ ++++|||+|+||| ||| |+||||.+ .|+|+||++|+.+|+.++..| ..+||+
T Consensus 152 -~viaGNV~T~e~a~~Li~aGAD~ikVgi-GpG-SicttR~~--------~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 152 -TIMAGNVVTGEMVEELILSGADIVKVGI-GPG-SVCTTRTK--------TGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred -eEEEecccCHHHHHHHHHcCCCEEEEcc-cCC-CcccCcee--------CCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 47899999999999 6799999999996 999 99999986 589999999999999887765 245654
Q ss_pred eEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccc
Q psy3862 518 TVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKL 592 (671)
Q Consensus 518 ~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~ 592 (671)
|+++|||+|||| ||+|+++||++|+|++.+. .+| +++|.||||+|.
T Consensus 221 ---Ir~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~-------------------------~~G-~~~K~yrGMgS~ 271 (343)
T TIGR01305 221 ---CTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIE-------------------------RNG-RKFKLFYGMSSD 271 (343)
T ss_pred ---cCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEe-------------------------ECC-EEEEEEeccchH
Confidence 799999999999 9999999999999999532 235 578999999999
Q ss_pred ccccc-ccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862 593 KELPR-RATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669 (671)
Q Consensus 593 ~a~~~-~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~ 669 (671)
.||++ .++.+|| +.+||++.+||||||++++|++|++||||+|+|+|+.+|+|||+|++|||||+|+|+||
T Consensus 272 ~Am~~~~g~~~ry------~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~~~~~~~ 343 (343)
T TIGR01305 272 TAMKKHAGGVAEY------RASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNTVF 343 (343)
T ss_pred HHHhhccCccccc------ccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEECcccccCC
Confidence 99985 3444555 45899999999999999999999999999999999999999999999999999999998
No 3
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=100.00 E-value=1.5e-78 Score=645.98 Aligned_cols=321 Identities=29% Similarity=0.377 Sum_probs=273.6
Q ss_pred ccCCCceeeeecCCCc-cCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862 293 IKLDFKDVMLRPKRST-LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK 371 (671)
Q Consensus 293 ~~l~fdDVll~P~rst-~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~ 371 (671)
.+||||||||+|++|| +.||+||||+|+++ +++++++|||||||||||+++||++|+++||||+||||+++|+|+
T Consensus 1 ~~ltfdDVllvP~~s~v~~s~~dv~~~~~~~----~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~ 76 (352)
T PF00478_consen 1 KGLTFDDVLLVPGRSTVLPSRSDVSLSTKLT----RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA 76 (352)
T ss_dssp EE--GGGEEEE--SBSSTGGGGG-BEEEESS----TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH
T ss_pred CCCccccEEEecCCCCCCCCHhheECccccc----CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH
Confidence 3799999999999999 66999999998886 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccc----------cceeeecccCh---hhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccc
Q psy3862 372 AFAVQNPDVI----------KHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNS 438 (671)
Q Consensus 372 ~~v~~~~~~~----------~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~ 438 (671)
+++++++... -.++++.++.+ ++..+|++||+|+|||| ++|||++++++.++.++..||.++
T Consensus 77 ~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID-~a~g~s~~~~~~ik~ik~~~~~~~---- 151 (352)
T PF00478_consen 77 EEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVID-SAHGHSEHVIDMIKKIKKKFPDVP---- 151 (352)
T ss_dssp HHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE--SSTTSHHHHHHHHHHHHHSTTSE----
T ss_pred HHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEcc-ccCccHHHHHHHHHHHHHhCCCce----
Confidence 9998865431 14566666765 45566789999999999 999999999999999999988774
Q ss_pred ccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---cc
Q psy3862 439 YLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AA 514 (671)
Q Consensus 439 ~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~ 514 (671)
|++|||+|+++++ ++++|||+||||+ ||| |+||||.+ +|+|+||+||+++|+.++.+|. ++
T Consensus 152 -----viaGNV~T~e~a~~L~~aGad~vkVGi-GpG-siCtTr~v--------~GvG~PQ~tAv~~~a~~a~~~~v~iIA 216 (352)
T PF00478_consen 152 -----VIAGNVVTYEGAKDLIDAGADAVKVGI-GPG-SICTTREV--------TGVGVPQLTAVYECAEAARDYGVPIIA 216 (352)
T ss_dssp -----EEEEEE-SHHHHHHHHHTT-SEEEESS-SSS-TTBHHHHH--------HSBSCTHHHHHHHHHHHHHCTTSEEEE
T ss_pred -----EEecccCCHHHHHHHHHcCCCEEEEec-cCC-cccccccc--------cccCCcHHHHHHHHHHHhhhccCceee
Confidence 6899999999999 6799999999996 999 99999986 6899999999999999988874 45
Q ss_pred CCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecc
Q psy3862 515 EGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGA 589 (671)
Q Consensus 515 ~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm 589 (671)
||. |+++|||+|||+ ||||++|||++|+||+.+. .+| +++|.||||
T Consensus 217 DGG---i~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~-------------------------~~g-~~~K~yrGM 267 (352)
T PF00478_consen 217 DGG---IRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIY-------------------------IDG-KRYKKYRGM 267 (352)
T ss_dssp ESS----SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEE-------------------------ETT-EEEEEEEET
T ss_pred cCC---cCcccceeeeeeecccceeechhhccCcCCCCceEE-------------------------ECC-eEEEEeccc
Confidence 554 799999999999 9999999999999999422 235 478999999
Q ss_pred cccccccc-ccccchhccc-cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccc
Q psy3862 590 SKLKELPR-RATFIRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666 (671)
Q Consensus 590 ~s~~a~~~-~~~~~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n 666 (671)
+|..||.+ .++.+||+.. ...++|||+++.||||||++++|++|++||||+|+|+|+++|+|||++++|||+|++-+
T Consensus 268 gS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~fvrvs~a~~ 346 (352)
T PF00478_consen 268 GSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARFVRVSSAGI 346 (352)
T ss_dssp TSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEEEEESHHHH
T ss_pred ccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeEEEEChhhc
Confidence 99999985 5678899765 36789999999999999999999999999999999999999999999999999998865
No 4
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-70 Score=569.11 Aligned_cols=343 Identities=67% Similarity=1.121 Sum_probs=311.5
Q ss_pred ccccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCH
Q psy3862 12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL 91 (671)
Q Consensus 12 ~~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~ 91 (671)
.|..+.+|+||||+|+|+++++.||++|||+.+|+++.+++.++++||+++||++|++.+||++||+.|+|++||+++++
T Consensus 2 ~i~~~~~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~ 81 (346)
T PRK05096 2 RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSV 81 (346)
T ss_pred cccccCCCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEecc
Q psy3862 92 EEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVT 170 (671)
Q Consensus 92 Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t 170 (671)
|+|.+|+++.+ .....+.+++|+.++|++|+.+|+++.+++|+|++|.+|||+..++++++++|+.||+..+++|
T Consensus 82 e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaG---- 157 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAG---- 157 (346)
T ss_pred HHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEe----
Confidence 99999997654 4455677889999999999999999777899999999999999999999999999997555554
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccc
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~T 250 (671)
||+|++++++|+++|||+|||||||||+|||
T Consensus 158 -------------------------------------------------NV~T~e~a~~Li~aGAD~vKVGIGpGSiCtT 188 (346)
T PRK05096 158 -------------------------------------------------NVVTGEMVEELILSGADIVKVGIGPGSVCTT 188 (346)
T ss_pred -------------------------------------------------cccCHHHHHHHHHcCCCEEEEcccCCccccC
Confidence 5555555555555566666999999999999
Q ss_pred ceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCcee
Q psy3862 251 RLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTY 330 (671)
Q Consensus 251 r~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~ 330 (671)
|+|+|+|+||+|||++||++|+++|
T Consensus 189 r~vtGvG~PQltAV~~~a~~a~~~g------------------------------------------------------- 213 (346)
T PRK05096 189 RVKTGVGYPQLSAVIECADAAHGLG------------------------------------------------------- 213 (346)
T ss_pred ccccccChhHHHHHHHHHHHHHHcC-------------------------------------------------------
Confidence 9999999999999999999999754
Q ss_pred eCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcc
Q psy3862 331 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGG 410 (671)
Q Consensus 331 ~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~ 410 (671)
+||||
T Consensus 214 --vpiIA------------------------------------------------------------------------- 218 (346)
T PRK05096 214 --GQIVS------------------------------------------------------------------------- 218 (346)
T ss_pred --CCEEe-------------------------------------------------------------------------
Confidence 56665
Q ss_pred ccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEE
Q psy3862 411 MFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVK 490 (671)
Q Consensus 411 ~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k 490 (671)
|||+..+||++|++.+|||+||+|.+.+|+.++|++++..+|+++|
T Consensus 219 ----------------------------------DGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K 264 (346)
T PRK05096 219 ----------------------------------DGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFM 264 (346)
T ss_pred ----------------------------------cCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEE
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred EeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccc
Q psy3862 491 LFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVN 570 (671)
Q Consensus 491 ~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~ 570 (671)
.|+||+|..||.+..+..++|+.++|..+.++|.|++.+.+..|+|+++++++|+|+..++|++.+++|+.++.+.|.++
T Consensus 265 ~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~q~n~~~ 344 (346)
T PRK05096 265 LFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF 344 (346)
T ss_pred EEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEEChhhcccc
Confidence 99999999999876677889988999999999999999999999999999999999999999999999999998877554
Q ss_pred c
Q psy3862 571 D 571 (671)
Q Consensus 571 ~ 571 (671)
+
T Consensus 345 ~ 345 (346)
T PRK05096 345 N 345 (346)
T ss_pred c
Confidence 3
No 5
>KOG2550|consensus
Probab=100.00 E-value=7.6e-71 Score=578.04 Aligned_cols=325 Identities=23% Similarity=0.267 Sum_probs=288.3
Q ss_pred eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH
Q psy3862 290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369 (671)
Q Consensus 290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~ 369 (671)
.+..+|||+||||+|+++++.+ +||||+++|+| ++.+++|+||||||||||++||++||.+||+|+||+||+||+
T Consensus 25 ~~~~~LtynDfliLPg~idF~s-~eVsL~t~ltr----~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~ 99 (503)
T KOG2550|consen 25 DSKIGLTYNDFLILPGFIDFAS-DEVSLQTKLTR----NITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPED 99 (503)
T ss_pred hcccCccccceeeccccccccc-ccceeehhhhh----cccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHH
Confidence 3455899999999999999999 59999999996 567889999999999999999999999999999999999999
Q ss_pred HHHHHhcCccc-------------------------------cc------------------------------------
Q psy3862 370 WKAFAVQNPDV-------------------------------IK------------------------------------ 382 (671)
Q Consensus 370 ~~~~v~~~~~~-------------------------------~~------------------------------------ 382 (671)
|++++++++.. ++
T Consensus 100 QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~ 179 (503)
T KOG2550|consen 100 QADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTK 179 (503)
T ss_pred HHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhccc
Confidence 99999875221 00
Q ss_pred -------------------------------------------------------------ceeeecccCh---hhHHHH
Q psy3862 383 -------------------------------------------------------------HVADGGCTSP---GDVAKA 398 (671)
Q Consensus 383 -------------------------------------------------------------~v~~~~~~~~---~~~~~l 398 (671)
.+.++.++.+ ++++.|
T Consensus 180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll 259 (503)
T KOG2550|consen 180 NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLL 259 (503)
T ss_pred ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHh
Confidence 1235566665 345666
Q ss_pred HHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccC
Q psy3862 399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQS 477 (671)
Q Consensus 399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~c 477 (671)
++||+|++|+| +++|+|.++++++++++..||.++ |+||||+|.++++ ++++|||+++|| ||+| |+|
T Consensus 260 ~~aGvdvviLD-SSqGnS~~qiemik~iK~~yP~l~---------ViaGNVVT~~qa~nLI~aGaDgLrVG-MGsG-SiC 327 (503)
T KOG2550|consen 260 VQAGVDVVILD-SSQGNSIYQLEMIKYIKETYPDLQ---------IIAGNVVTKEQAANLIAAGADGLRVG-MGSG-SIC 327 (503)
T ss_pred hhcCCcEEEEe-cCCCcchhHHHHHHHHHhhCCCce---------eeccceeeHHHHHHHHHccCceeEec-cccC-cee
Confidence 89999999999 999999999999999999999996 7899999999998 689999999999 6999 999
Q ss_pred CCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccc
Q psy3862 478 GGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASK 549 (671)
Q Consensus 478 tt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~ 549 (671)
+|+.++ ++|+||.||+++|+..+.++. .+||+ |++.|||+|||+ ||||++|||++|+||++
T Consensus 328 iTqevm--------a~GrpQ~TAVy~va~~A~q~gvpviADGG---iq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGey 396 (503)
T KOG2550|consen 328 ITQKVM--------ACGRPQGTAVYKVAEFANQFGVPCIADGG---IQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEY 396 (503)
T ss_pred eeceee--------eccCCcccchhhHHHHHHhcCCceeecCC---cCccchhHhhhhcCchhheecceeeeeeccCcce
Confidence 999974 799999999999988776653 45554 799999999999 99999999999999996
Q ss_pred ccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHH
Q psy3862 550 LKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVND 628 (671)
Q Consensus 550 i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~ 628 (671)
| +.+| +++|+||||+|++||+ ..+..||+.+. +++++||+++.|+||||++.
T Consensus 397 ---------f----------------~~~g-~rlKkyrGMGSl~AM~-~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~k 449 (503)
T KOG2550|consen 397 ---------F----------------FRDG-VRLKKYRGMGSLDAME-SSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQK 449 (503)
T ss_pred ---------e----------------eecC-eeehhccCcchHHHHh-hhhhhccccccceEeeccCcEEEeccCcchhh
Confidence 3 2345 5789999999999999 66778999865 67999999999999999999
Q ss_pred HHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862 629 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669 (671)
Q Consensus 629 ~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~ 669 (671)
+|+++++||||+|+|+|+++|++|+++.+|.+++.+.|+++
T Consensus 450 fipyl~~giqh~cqdiGa~sL~~l~~~~~~~~vrfe~rt~~ 490 (503)
T KOG2550|consen 450 FIPYLLAGIQHSCQDIGARSLKELREMMYSGEVRFEKRTMS 490 (503)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHhhcceEEEEecccc
Confidence 99999999999999999999999999999999999999986
No 6
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=100.00 E-value=6.5e-66 Score=540.00 Aligned_cols=337 Identities=74% Similarity=1.207 Sum_probs=307.7
Q ss_pred cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862 15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 94 (671)
Q Consensus 15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq 94 (671)
.+.+|+||||+|+|+++++.||++|||+++|++|.++.+++++||+++||+++++.+||++||+.|+|++||+|+++|+|
T Consensus 4 ~~~~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~ 83 (343)
T TIGR01305 4 ADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEW 83 (343)
T ss_pred ccCCCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc-CcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHH
Q psy3862 95 KAFAVQ-NPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEM 173 (671)
Q Consensus 95 ~~~i~~-~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~ 173 (671)
.+|+++ .++....+.+++|+.++|++|+++|+++.+++|+|++|.+|||+..+++.++++|+.+|...+++||+.|+|.
T Consensus 84 ~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~ 163 (343)
T TIGR01305 84 KAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEM 163 (343)
T ss_pred HHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHH
Confidence 999976 4555566778899999999999999999888999999999999999999999999999876555555555555
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK 253 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V 253 (671)
++ +|+++|||+|||||||||+||||.+
T Consensus 164 a~-----------------------------------------------------~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 164 VE-----------------------------------------------------ELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred HH-----------------------------------------------------HHHHcCCCEEEEcccCCCcccCcee
Confidence 55 5555555556999999999999999
Q ss_pred cccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862 254 TGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV 333 (671)
Q Consensus 254 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i 333 (671)
+|+|+||+|||++|+++++++ ++
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~---------------------------------------------------------~v 213 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGL---------------------------------------------------------KG 213 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccC---------------------------------------------------------CC
Confidence 999999999999999999864 46
Q ss_pred ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862 334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA 413 (671)
Q Consensus 334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~ 413 (671)
|||+
T Consensus 214 ~VIa---------------------------------------------------------------------------- 217 (343)
T TIGR01305 214 HIIS---------------------------------------------------------------------------- 217 (343)
T ss_pred eEEE----------------------------------------------------------------------------
Confidence 7766
Q ss_pred cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862 414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY 493 (671)
Q Consensus 414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~ 493 (671)
|||+..++|++|++.+|||+||+|.+.+|+.+++++.+..+|+++|.|+
T Consensus 218 -------------------------------DGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yr 266 (343)
T TIGR01305 218 -------------------------------DGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFY 266 (343)
T ss_pred -------------------------------cCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEe
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccc
Q psy3862 494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNN 568 (671)
Q Consensus 494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~ 568 (671)
||+|..||.+..+..++|+..+|..+.++|.|++.+.+..|+|+++++++|+|+..++|++.+++|+.++.+.|.
T Consensus 267 GMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~~~~~ 341 (343)
T TIGR01305 267 GMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNT 341 (343)
T ss_pred ccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEECccccc
Confidence 999999998666778899889999999999999999999999999999999999999999999999999887654
No 7
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=6e-66 Score=558.70 Aligned_cols=323 Identities=23% Similarity=0.344 Sum_probs=278.7
Q ss_pred cceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC
Q psy3862 286 AQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY 365 (671)
Q Consensus 286 ~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~ 365 (671)
-|++ ...+||||||||+|++|++.| +|||++|+|+ +.+.+++|||+||||||++++||++|++.||||+||+++
T Consensus 2 ~~~~-~~~~ltfdDvll~P~~s~~~~-~~vdl~t~lt----~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~ 75 (404)
T PRK06843 2 PNKI-TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM 75 (404)
T ss_pred Cccc-cccccCccceEEccCCCccCH-Hhccccchhh----hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCC
Confidence 3454 456899999999999999995 9999999997 578899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCccc-------------------------c---------------c----------ceeeecccCh---
Q psy3862 366 TLEEWKAFAVQNPDV-------------------------I---------------K----------HVADGGCTSP--- 392 (671)
Q Consensus 366 ~~e~~~~~v~~~~~~-------------------------~---------------~----------~v~~~~~~~~--- 392 (671)
++|+|.++++++++. + + .++++.++++
T Consensus 76 ~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~ 155 (404)
T PRK06843 76 SIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTI 155 (404)
T ss_pred CHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHH
Confidence 999999999754321 0 0 2455555655
Q ss_pred hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccc
Q psy3862 393 GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMF 471 (671)
Q Consensus 393 ~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g 471 (671)
++++.|+++|+|+|+|| ++|||+.+..++++.++.+||.+. ++.|||.|.+.++ ++++|||+|+||+ |
T Consensus 156 ~~v~~lv~aGvDvI~iD-~a~g~~~~~~~~v~~ik~~~p~~~---------vi~g~V~T~e~a~~l~~aGaD~I~vG~-g 224 (404)
T PRK06843 156 ERVEELVKAHVDILVID-SAHGHSTRIIELVKKIKTKYPNLD---------LIAGNIVTKEAALDLISVGADCLKVGI-G 224 (404)
T ss_pred HHHHHHHhcCCCEEEEE-CCCCCChhHHHHHHHHHhhCCCCc---------EEEEecCCHHHHHHHHHcCCCEEEECC-C
Confidence 46677899999999999 999999999999999998888774 5678899999998 6799999999996 9
Q ss_pred cCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhcc
Q psy3862 472 AGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACT 543 (671)
Q Consensus 472 ~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~ 543 (671)
|| |+||||.+ .|+|.||++++.+|+..+.++. .++|+ |+++|||+|||+ ||+|++|++++
T Consensus 225 ~G-s~c~tr~~--------~g~g~p~ltai~~v~~~~~~~~vpVIAdGG---I~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 225 PG-SICTTRIV--------AGVGVPQITAICDVYEVCKNTNICIIADGG---IRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred CC-cCCcceee--------cCCCCChHHHHHHHHHHHhhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 99 99999875 5789999999988876554331 35554 799999999999 99999999999
Q ss_pred ccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcc----ccccccCCCceEe
Q psy3862 544 YVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA----QLNNVAAEGKTVQ 619 (671)
Q Consensus 544 e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~----~~~~~~~eG~~~~ 619 (671)
||||+++. .+| +++|.||||+|+.||.+ ++.+||+. ..++++|||+++.
T Consensus 293 Espg~~~~-------------------------~~g-~~~K~yrGmgS~~Am~~-~~~~ry~~~~~~~~~~~v~eGveg~ 345 (404)
T PRK06843 293 ESPSEEII-------------------------YNG-KKFKSYVGMGSISAMKR-GSKSRYFQLENNEPKKLVPEGIEGM 345 (404)
T ss_pred cCCCcEEE-------------------------ECC-EEEEEEeccchHHHHhc-cccccccccccccccccCCCccEEE
Confidence 99999421 335 57899999999999974 45689976 2467999999999
Q ss_pred cccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862 620 VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664 (671)
Q Consensus 620 v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q 664 (671)
||||||++++|++|+|||||+|+|+|+++|+|||+|++|+|+|.+
T Consensus 346 v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~ 390 (404)
T PRK06843 346 VPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 390 (404)
T ss_pred ecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchh
Confidence 999999999999999999999999999999999999999999976
No 8
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=100.00 E-value=1.4e-65 Score=570.31 Aligned_cols=320 Identities=21% Similarity=0.272 Sum_probs=275.1
Q ss_pred ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862 291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 370 (671)
Q Consensus 291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~ 370 (671)
+..+||||||||+|++|++.||++|||+++++ +.+++|||||||||||+.+||++||++||+|+||||+++|+|
T Consensus 8 ~~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~q 81 (475)
T TIGR01303 8 PGYDLTYNDVFMVPSRSEVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAV 81 (475)
T ss_pred CCCCCCccceEEccCccCccCCCceeeccccc------CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence 46789999999999999999989999999987 368999999999999999999999999999999999999999
Q ss_pred HHHHhcCcc--c----------------------------------------c---------------------------
Q psy3862 371 KAFAVQNPD--V----------------------------------------I--------------------------- 381 (671)
Q Consensus 371 ~~~v~~~~~--~----------------------------------------~--------------------------- 381 (671)
.++++.++. . +
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~ 161 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA 161 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence 998875411 0 0
Q ss_pred ----------------cc------------------------------------eeeecccCh---hhHHHHHHcCCcEE
Q psy3862 382 ----------------KH------------------------------------VADGGCTSP---GDVAKAMGAGADFV 406 (671)
Q Consensus 382 ----------------~~------------------------------------v~~~~~~~~---~~~~~l~~aG~d~i 406 (671)
++ +.+..++.+ +++..|+++|+|+|
T Consensus 162 ~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i 241 (475)
T TIGR01303 162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVL 241 (475)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEE
Confidence 00 111111222 45667789999999
Q ss_pred EEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862 407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD 485 (671)
Q Consensus 407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~ 485 (671)
+|| ++|||+.+++++++.++..||.+. |++||+.|.+.++ ++++|||+|+||+ ||| |+||||.+
T Consensus 242 ~~D-~a~g~~~~~~~~i~~i~~~~~~~~---------vi~g~~~t~~~~~~l~~~G~d~i~vg~-g~G-s~~ttr~~--- 306 (475)
T TIGR01303 242 VID-TAHGHQVKMISAIKAVRALDLGVP---------IVAGNVVSAEGVRDLLEAGANIIKVGV-GPG-AMCTTRMM--- 306 (475)
T ss_pred EEe-CCCCCcHHHHHHHHHHHHHCCCCe---------EEEeccCCHHHHHHHHHhCCCEEEECC-cCC-ccccCccc---
Confidence 999 999999999999999999888773 6789999999999 5699999999996 999 99999975
Q ss_pred CeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcc
Q psy3862 486 GKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRA 557 (671)
Q Consensus 486 g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a 557 (671)
+|+|+||++|+.+|+.++.+| ..++|+ |+++|||+|||+ ||+|++|||++|+||+++.+
T Consensus 307 -----~~~g~~~~~a~~~~~~~~~~~~~~viadGg---i~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~----- 373 (475)
T TIGR01303 307 -----TGVGRPQFSAVLECAAEARKLGGHVWADGG---VRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRD----- 373 (475)
T ss_pred -----cCCCCchHHHHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEe-----
Confidence 689999999999998776665 246664 799999999999 99999999999999995210
Q ss_pred eEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceE----ecccccCHHHHHHH
Q psy3862 558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTV----QVPYRGDVNDTVQD 632 (671)
Q Consensus 558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~----~v~~kG~v~~~l~~ 632 (671)
.+| +++|.||||+|++||.+.++.+||+.+. ++.+|||+++ .||||||++++|++
T Consensus 374 -------------------~~g-~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~ 433 (475)
T TIGR01303 374 -------------------RDG-RPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDH 433 (475)
T ss_pred -------------------ECC-EEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHH
Confidence 345 5789999999999998666788998643 5689999996 56789999999999
Q ss_pred HHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862 633 ILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664 (671)
Q Consensus 633 l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q 664 (671)
|+|||||+|+|+|+++|+|||++++|+|+|.+
T Consensus 434 ~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~~ 465 (475)
T TIGR01303 434 IISGVRSSCTYAGASSLEEFHERAVVGVQSGA 465 (475)
T ss_pred HHHHHHHHhhhcCCCcHHHHHhCCEEEEEccc
Confidence 99999999999999999999999999999975
No 9
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=100.00 E-value=6.2e-63 Score=526.28 Aligned_cols=325 Identities=45% Similarity=0.718 Sum_probs=273.2
Q ss_pred CCCCCceEEecCCcC-CCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862 18 KLDFKDVMLRPKRST-LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA 96 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~-~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~ 96 (671)
+||||||+|+|++++ ..++.+|||+++++ ++++|++||++||||+|++.+||++|++.||||+||+|+++|+|.+
T Consensus 2 ~ltfdDVllvP~~s~v~~s~~dv~~~~~~~----~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~ 77 (352)
T PF00478_consen 2 GLTFDDVLLVPGRSTVLPSRSDVSLSTKLT----RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAE 77 (352)
T ss_dssp E--GGGEEEE--SBSSTGGGGG-BEEEESS----TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHH
T ss_pred CCccccEEEecCCCCCCCCHhheECccccc----CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHH
Confidence 689999999999998 44568888888887 7999999999999999999999999999999999999999999988
Q ss_pred hhhc----Ccc----cccc--eEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE
Q psy3862 97 FAVQ----NPD----VIKH--VAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG 166 (671)
Q Consensus 97 ~i~~----~p~----~~~~--~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g 166 (671)
++++ .|. ..++ +++++|...++.+|+.+|+++ ++|++++|.+|||++..++.++++|+.||+..+++|
T Consensus 78 ~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~a--gvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaG 155 (352)
T PF00478_consen 78 EVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEA--GVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAG 155 (352)
T ss_dssp HHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHT--T-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEE
T ss_pred HHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHc--CCCEEEccccCccHHHHHHHHHHHHHhCCCceEEec
Confidence 8752 122 1223 456777887889999999998 899999999999999999999999999987666665
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
|+. |++++++|+++|||+|||||||||
T Consensus 156 NV~-----------------------------------------------------T~e~a~~L~~aGad~vkVGiGpGs 182 (352)
T PF00478_consen 156 NVV-----------------------------------------------------TYEGAKDLIDAGADAVKVGIGPGS 182 (352)
T ss_dssp EE------------------------------------------------------SHHHHHHHHHTT-SEEEESSSSST
T ss_pred ccC-----------------------------------------------------CHHHHHHHHHcCCCEEEEeccCCc
Confidence 554 455555555555666699999999
Q ss_pred ccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccC
Q psy3862 247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNS 326 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s 326 (671)
+||||+|+|+|+||+|||+|||++|+++
T Consensus 183 iCtTr~v~GvG~PQ~tAv~~~a~~a~~~---------------------------------------------------- 210 (352)
T PF00478_consen 183 ICTTREVTGVGVPQLTAVYECAEAARDY---------------------------------------------------- 210 (352)
T ss_dssp TBHHHHHHSBSCTHHHHHHHHHHHHHCT----------------------------------------------------
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhc----------------------------------------------------
Confidence 9999999999999999999999999864
Q ss_pred CceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEE
Q psy3862 327 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFV 406 (671)
Q Consensus 327 ~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i 406 (671)
++||||
T Consensus 211 -----~v~iIA--------------------------------------------------------------------- 216 (352)
T PF00478_consen 211 -----GVPIIA--------------------------------------------------------------------- 216 (352)
T ss_dssp -----TSEEEE---------------------------------------------------------------------
T ss_pred -----cCceee---------------------------------------------------------------------
Confidence 467777
Q ss_pred EEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCC
Q psy3862 407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDG 486 (671)
Q Consensus 407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g 486 (671)
|||+..++|++|+|.+|||+||+|.+++|+.++|++.+..+|
T Consensus 217 --------------------------------------DGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g 258 (352)
T PF00478_consen 217 --------------------------------------DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDG 258 (352)
T ss_dssp --------------------------------------ESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETT
T ss_pred --------------------------------------cCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECC
Confidence 899999999999999999999999999999999999999999
Q ss_pred eEEEEeeCcccHHHHHhhcccccccc-------ccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceE
Q psy3862 487 KKVKLFYGMSSTTAMDKHAGGVAEYR-------AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATF 559 (671)
Q Consensus 487 ~~~k~g~G~~q~tAi~~~a~~~~~y~-------~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~f 559 (671)
.++|.|+||+|..|+.+..+..++|+ .++|....++|.|++.+.+..++|+++++++++|...++|++.++.|
T Consensus 259 ~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~f 338 (352)
T PF00478_consen 259 KRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARF 338 (352)
T ss_dssp EEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEE
T ss_pred eEEEEecccccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeE
Confidence 99999999999999987556667774 35788888999999999999999999999999999999999999999
Q ss_pred EEeccc
Q psy3862 560 IRCTAQ 565 (671)
Q Consensus 560 v~~~~~ 565 (671)
++++.+
T Consensus 339 vrvs~a 344 (352)
T PF00478_consen 339 VRVSSA 344 (352)
T ss_dssp EEESHH
T ss_pred EEEChh
Confidence 987664
No 10
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=6.7e-63 Score=552.07 Aligned_cols=325 Identities=20% Similarity=0.218 Sum_probs=274.7
Q ss_pred eeccccCCCceeeeecCCCc--cCCCCcccceeeeee-c-cCC-ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEcc
Q psy3862 289 IINDIKLDFKDVMLRPKRST--LKSRSEVDITRTFTF-R-NSG-KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK 363 (671)
Q Consensus 289 i~~~~~l~fdDVll~P~rst--~~sr~eVdl~~~l~~-~-~s~-~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr 363 (671)
+.++.+||||||||+|++|+ +.| ++|||+++|+. + .++ ++.+++|++||+||||++.+||++|++.|||++||+
T Consensus 4 ~~~~~~~tfddvll~P~~~~~~~~~-~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~ 82 (502)
T PRK07107 4 YFEEPSRTFSEYLLVPGLSSKECVP-ANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFG 82 (502)
T ss_pred eecCCCccccceEEccCCCCCCcCc-cceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeC
Confidence 35788899999999999997 455 89999999983 2 333 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCccc---------------------------------------------------------------
Q psy3862 364 YYTLEEWKAFAVQNPDV--------------------------------------------------------------- 380 (671)
Q Consensus 364 ~~~~e~~~~~v~~~~~~--------------------------------------------------------------- 380 (671)
|+++|+|+++++++++.
T Consensus 83 n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~ 162 (502)
T PRK07107 83 SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTK 162 (502)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCC
Confidence 99999999985432110
Q ss_pred -----------c-----------------------c--------------------------------ceeeecccC--h
Q psy3862 381 -----------I-----------------------K--------------------------------HVADGGCTS--P 392 (671)
Q Consensus 381 -----------~-----------------------~--------------------------------~v~~~~~~~--~ 392 (671)
+ + ++....+++ +
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~ 242 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRD 242 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhh
Confidence 0 0 000011111 2
Q ss_pred --hhHHHHHHcCCcEEEEcccccccccccccccccccccccc-ccccccccCceeeccccCchhHHH-HHHcCCcEEEEC
Q psy3862 393 --GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPL-VGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLG 468 (671)
Q Consensus 393 --~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG 468 (671)
++.+.|+++|+|+|+|| ++|||+.++++.++.++..||. + .|.+|||.|.+.++ ++++|||+|+||
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~---------~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 243 YAERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSV---------KVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCc---------eEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 44566789999999999 9999999999998888877763 3 46899999999999 679999999999
Q ss_pred ccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEe------eecCCCHHHHHH-----HHHhh
Q psy3862 469 GMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQ------VPYRGDVNDTVQ-----DILGG 537 (671)
Q Consensus 469 ~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~------i~~~Gdi~kAia-----vMlG~ 537 (671)
+ ||| |+||||.+ +|+|+||++|+.+|+.++++|+.+.|.+++ |+++|||+|||| ||+|+
T Consensus 313 ~-g~G-s~c~tr~~--------~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~ 382 (502)
T PRK07107 313 I-GGG-SICITREQ--------KGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGR 382 (502)
T ss_pred C-CCC-cCcccccc--------cCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeCh
Confidence 6 999 99999875 689999999999999988887767775555 699999999999 99999
Q ss_pred HhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcc--ccccccCCC
Q psy3862 538 LRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA--QLNNVAAEG 615 (671)
Q Consensus 538 ~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~--~~~~~~~eG 615 (671)
+|||++|+||+++ +.+| +++|.||||+|..||. .+||+. ..++++|||
T Consensus 383 ~~ag~~espg~~~-------------------------~~~g-~~~k~yrgm~s~~a~~----~~ry~~~~~~~~~~~eg 432 (502)
T PRK07107 383 YFARFDESPTNKV-------------------------NING-NYMKEYWGEGSNRARN----WQRYDLGGDKKLSFEEG 432 (502)
T ss_pred hhhccccCCCcEE-------------------------EECC-EEEEEeecccCHhhhh----ccccccccccccccCCc
Confidence 9999999999942 2346 5789999999999995 467762 235789999
Q ss_pred ceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862 616 KTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664 (671)
Q Consensus 616 ~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q 664 (671)
+++.||||||++++|++|+|||||+|+|+|+.+|+|||++++|+|+|.+
T Consensus 433 v~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~~ 481 (502)
T PRK07107 433 VDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSST 481 (502)
T ss_pred cEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECcc
Confidence 9999999999999999999999999999999999999999999999976
No 11
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-61 Score=537.22 Aligned_cols=372 Identities=29% Similarity=0.432 Sum_probs=277.4
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA 96 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~ 96 (671)
.+||||||+|+|+++++.| ++||++|+|| +.+.|++||++++|+|||+.+||+|||++||||+||+||++|+|.+
T Consensus 16 ~~lt~ddv~l~p~~~~~~~-~~v~~~t~l~----~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~ 90 (495)
T PTZ00314 16 TGLTYDDVILLPGYIDFSR-DDVDLSTRLT----RNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE 90 (495)
T ss_pred cCCCccceEeccccccccc-cccccccccc----CCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHH
Confidence 5899999999999999975 7999999998 7899999999999999999999999999999999999999999988
Q ss_pred hhhcCcc-----cccceEEecCCChhhHHHHHHHHHhCC-----------------------------------------
Q psy3862 97 FAVQNPD-----VIKHVAVSSGISAKDLAGLKEILAALP----------------------------------------- 130 (671)
Q Consensus 97 ~i~~~p~-----~~~~~~v~~G~~~~d~~rl~~l~~a~~----------------------------------------- 130 (671)
++++... ...++.+.+..+. ..+.+++....
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv---~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~ 167 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTV---ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTP 167 (495)
T ss_pred HHhhccccccccccCCeecCCCCCH---HHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCC
Confidence 8863221 1112222111111 11111221100
Q ss_pred ------------------------CceEEEeeccCCCChHHHHHHHHHH--HhCCCc------eEEE-EEec----cHHH
Q psy3862 131 ------------------------EIEYICLDVANGYTQTFVDFVRRIR--EMYPKH------VIIA-GNVV----TGEM 173 (671)
Q Consensus 131 ------------------------~~d~Ivld~a~G~~~~~~~~ik~lr--~~~P~~------~li~-g~v~----t~e~ 173 (671)
.....++|..+ ....++ ..+++. ..||++ .+++ +.+. ..++
T Consensus 168 ~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGII-T~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~ 245 (495)
T PTZ00314 168 REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALV-SRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER 245 (495)
T ss_pred cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEE-EehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence 00011111100 000000 011111 125543 2444 4553 2589
Q ss_pred HHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcc
Q psy3862 174 VEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC 248 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~ 248 (671)
+++|+++|+|+|++|.+|||+. ++++++.+|++.+ +||||.|.++++.|+++|||+|+||+||||+|
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v--------~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDI--------IAGNVVTADQAKNLIDAGADGLRIGMGSGSIC 317 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceE--------EECCcCCHHHHHHHHHcCCCEEEECCcCCccc
Confidence 9999999999999999999862 3334444444322 69999999999999999999999999999999
Q ss_pred ccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCc
Q psy3862 249 TTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGK 328 (671)
Q Consensus 249 ~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~ 328 (671)
|||.++|+|+||++|+++|++++++.
T Consensus 318 ~t~~~~~~g~p~~~ai~~~~~~~~~~------------------------------------------------------ 343 (495)
T PTZ00314 318 ITQEVCAVGRPQASAVYHVARYARER------------------------------------------------------ 343 (495)
T ss_pred ccchhccCCCChHHHHHHHHHHHhhc------------------------------------------------------
Confidence 99999999999999999999999753
Q ss_pred eeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE
Q psy3862 329 TYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML 408 (671)
Q Consensus 329 ~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i 408 (671)
++|+|+
T Consensus 344 ---~v~vIa----------------------------------------------------------------------- 349 (495)
T PTZ00314 344 ---GVPCIA----------------------------------------------------------------------- 349 (495)
T ss_pred ---CCeEEe-----------------------------------------------------------------------
Confidence 477777
Q ss_pred ccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeE
Q psy3862 409 GGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKK 488 (671)
Q Consensus 409 d~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~ 488 (671)
+||+..+++++|++.+|||+||+|.+..|+.+||++.+..+|++
T Consensus 350 ------------------------------------dGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~ 393 (495)
T PTZ00314 350 ------------------------------------DGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVR 393 (495)
T ss_pred ------------------------------------cCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeE
Confidence 79999999999999999999999976666555555554444444
Q ss_pred EEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccc
Q psy3862 489 VKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNN 568 (671)
Q Consensus 489 ~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~ 568 (671)
+
T Consensus 394 ~------------------------------------------------------------------------------- 394 (495)
T PTZ00314 394 L------------------------------------------------------------------------------- 394 (495)
T ss_pred E-------------------------------------------------------------------------------
Confidence 4
Q ss_pred cccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcc
Q psy3862 569 VNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGAS 647 (671)
Q Consensus 569 ~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~ 647 (671)
|.||||+|..||...++.+||+... ++.+|||+++.||||||++++|++|.+||||+|+|+|++
T Consensus 395 ---------------k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~ 459 (495)
T PTZ00314 395 ---------------KVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAH 459 (495)
T ss_pred ---------------EEEeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence 4555555555554334445555422 457999999999999999999999999999999999999
Q ss_pred ccccccc-----ccEEEEeccc
Q psy3862 648 KLKELPR-----RATFIRCTAQ 664 (671)
Q Consensus 648 ~l~el~~-----~a~Fvrvt~q 664 (671)
+|+|||+ |++|+|+|.+
T Consensus 460 ~i~~~~~~~~~~~~~f~~~t~~ 481 (495)
T PTZ00314 460 SIPELHEKLYSGQVRFERRSGS 481 (495)
T ss_pred cHHHHHhhcccCceEEEEEChh
Confidence 9999999 9999999975
No 12
>KOG2550|consensus
Probab=100.00 E-value=2.3e-61 Score=506.66 Aligned_cols=371 Identities=33% Similarity=0.511 Sum_probs=287.5
Q ss_pred ccccccc-cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC
Q psy3862 10 AQKIIND-IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY 88 (671)
Q Consensus 10 ~~~~~~~-~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n 88 (671)
+++++.. .+|||+|++|+|+++++.+ ++|||++.|| ++++|++|+++||||+||+.+||++||..||+|+||+|
T Consensus 20 ~~~L~~~~~~LtynDfliLPg~idF~s-~eVsL~t~lt----r~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhN 94 (503)
T KOG2550|consen 20 VQELFDSKIGLTYNDFLILPGFIDFAS-DEVSLQTKLT----RNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHN 94 (503)
T ss_pred HHHHhhcccCccccceeeccccccccc-ccceeehhhh----hcccccCceeccCCcccchhHHHHHHHhcCCceeeecC
Confidence 4556644 5899999999999999975 6999999998 78889999999999999999999999999999999999
Q ss_pred CCHHHHHHhhhc----------Ccccccc-------------eE---E-----------ecC-CChhhHHHHH-------
Q psy3862 89 YTLEEWKAFAVQ----------NPDVIKH-------------VA---V-----------SSG-ISAKDLAGLK------- 123 (671)
Q Consensus 89 ~~~Eeq~~~i~~----------~p~~~~~-------------~~---v-----------~~G-~~~~d~~rl~------- 123 (671)
|+||+|+.++++ +|..+.| .+ + -+| ++.+|+.+++
T Consensus 95 ctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~ 174 (503)
T KOG2550|consen 95 CTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVS 174 (503)
T ss_pred CCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhh
Confidence 999999888752 1211111 00 0 011 1233443332
Q ss_pred HHHHhCC--CceEEEeeccCCCC--------------hHHHHHH--HHHH--HhCCCc------eEEEE-Eecc----HH
Q psy3862 124 EILAALP--EIEYICLDVANGYT--------------QTFVDFV--RRIR--EMYPKH------VIIAG-NVVT----GE 172 (671)
Q Consensus 124 ~l~~a~~--~~d~Ivld~a~G~~--------------~~~~~~i--k~lr--~~~P~~------~li~g-~v~t----~e 172 (671)
++|...+ ...-|.++.+|+.. .+++.++ .+++ +.||.+ +++|| ++.| .+
T Consensus 175 ~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~ 254 (503)
T KOG2550|consen 175 DVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKE 254 (503)
T ss_pred hhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhH
Confidence 2222211 00011222221110 1111111 2232 347754 36666 4544 68
Q ss_pred HHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862 173 MVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSV 247 (671)
Q Consensus 173 ~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~ 247 (671)
+.+.|.+||+|+|++|++||.++ ++.+++++|.+++ +||||+|++++++||++||||+|||||+||+
T Consensus 255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~V--------iaGNVVT~~qa~nLI~aGaDgLrVGMGsGSi 326 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQI--------IAGNVVTKEQAANLIAAGADGLRVGMGSGSI 326 (503)
T ss_pred HHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCcee--------eccceeeHHHHHHHHHccCceeEeccccCce
Confidence 89999999999999999999752 2234444444333 6999999999999999999999999999999
Q ss_pred cccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCC
Q psy3862 248 CTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSG 327 (671)
Q Consensus 248 ~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~ 327 (671)
||||+|++|||||.||||+||++|+++
T Consensus 327 CiTqevma~GrpQ~TAVy~va~~A~q~----------------------------------------------------- 353 (503)
T KOG2550|consen 327 CITQKVMACGRPQGTAVYKVAEFANQF----------------------------------------------------- 353 (503)
T ss_pred eeeceeeeccCCcccchhhHHHHHHhc-----------------------------------------------------
Confidence 999999999999999999999999974
Q ss_pred ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEE
Q psy3862 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVM 407 (671)
Q Consensus 328 ~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~ 407 (671)
++|+||
T Consensus 354 ----gvpviA---------------------------------------------------------------------- 359 (503)
T KOG2550|consen 354 ----GVPCIA---------------------------------------------------------------------- 359 (503)
T ss_pred ----CCceee----------------------------------------------------------------------
Confidence 566666
Q ss_pred EccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862 408 LGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK 487 (671)
Q Consensus 408 id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~ 487 (671)
+||+...++++|++..||+.||+|.+.+|+.++|++++..+|+
T Consensus 360 -------------------------------------DGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~ 402 (503)
T KOG2550|consen 360 -------------------------------------DGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGV 402 (503)
T ss_pred -------------------------------------cCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCe
Confidence 8999999999999999999999999999999999999999999
Q ss_pred EEEEeeCcccHHHHHh-----hccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcc
Q psy3862 488 KVKLFYGMSSTTAMDK-----HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557 (671)
Q Consensus 488 ~~k~g~G~~q~tAi~~-----~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a 557 (671)
|+|+++||++++||.. ..+..++|..+.|..+.|+++|++.|-+...++++..++++.|++.+++++...
T Consensus 403 rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~ 477 (503)
T KOG2550|consen 403 RLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMM 477 (503)
T ss_pred eehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence 9999999999999983 223445555788888889999999999999999999999999999988877764
No 13
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1e-61 Score=539.79 Aligned_cols=319 Identities=23% Similarity=0.281 Sum_probs=271.9
Q ss_pred cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862 292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK 371 (671)
Q Consensus 292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~ 371 (671)
..+||||||||+|++|++.||++|||+++++ +.+++||+||||||||+.+||++|++.||+|+||+|+++++|.
T Consensus 10 ~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~ 83 (479)
T PRK07807 10 AYDLTYDDVFLVPSRSDVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVA 83 (479)
T ss_pred CcCcCccceEecccccCccCCCceecccCCC------CccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHH
Confidence 4689999999999999999988999999753 5799999999999999999999999999999999999999999
Q ss_pred HHHhcCcc--c-----------------------------------------c---------------------------
Q psy3862 372 AFAVQNPD--V-----------------------------------------I--------------------------- 381 (671)
Q Consensus 372 ~~v~~~~~--~-----------------------------------------~--------------------------- 381 (671)
++++.++. . +
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~ 163 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA 163 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence 98765310 0 0
Q ss_pred ----------------cc------------------------------------eeeecccCh---hhHHHHHHcCCcEE
Q psy3862 382 ----------------KH------------------------------------VADGGCTSP---GDVAKAMGAGADFV 406 (671)
Q Consensus 382 ----------------~~------------------------------------v~~~~~~~~---~~~~~l~~aG~d~i 406 (671)
+. +.+..++.+ +.+..|+++|+|+|
T Consensus 164 d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i 243 (479)
T PRK07807 164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVL 243 (479)
T ss_pred CCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEE
Confidence 00 011111122 33455688999999
Q ss_pred EEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862 407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD 485 (671)
Q Consensus 407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~ 485 (671)
++| ++|||+.+++++++.++..||.+. |++|||.|.+.++ ++++|||+|+||+ ||| |+||||.+
T Consensus 244 ~~D-~a~~~~~~~~~~i~~ik~~~p~~~---------v~agnv~t~~~a~~l~~aGad~v~vgi-g~g-sictt~~~--- 308 (479)
T PRK07807 244 VVD-TAHGHQEKMLEALRAVRALDPGVP---------IVAGNVVTAEGTRDLVEAGADIVKVGV-GPG-AMCTTRMM--- 308 (479)
T ss_pred EEe-ccCCccHHHHHHHHHHHHHCCCCe---------EEeeccCCHHHHHHHHHcCCCEEEECc-cCC-cccccccc---
Confidence 999 999999999999999999999884 7899999999999 6799999999996 999 99999986
Q ss_pred CeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcc
Q psy3862 486 GKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRA 557 (671)
Q Consensus 486 g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a 557 (671)
+|+|+||+||+.+|+.++.+| ..++|+ |+++||++|||+ ||+|++|||++|+||+++.+
T Consensus 309 -----~~~~~p~~~av~~~~~~~~~~~~~via~gg---i~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~----- 375 (479)
T PRK07807 309 -----TGVGRPQFSAVLECAAAARELGAHVWADGG---VRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRD----- 375 (479)
T ss_pred -----cCCchhHHHHHHHHHHHHHhcCCcEEecCC---CCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEec-----
Confidence 578999999999998876654 246664 799999999999 99999999999999985221
Q ss_pred eEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEec----ccccCHHHHHHH
Q psy3862 558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQV----PYRGDVNDTVQD 632 (671)
Q Consensus 558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v----~~kG~v~~~l~~ 632 (671)
.+| +.+|.||||+|.+||.+..+.+||+... +.++|||++.+| |||||+.++|++
T Consensus 376 -------------------~~g-~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~ 435 (479)
T PRK07807 376 -------------------RDG-RPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDH 435 (479)
T ss_pred -------------------cCC-eEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHH
Confidence 234 4678999999999998665667887643 578999999974 779999999999
Q ss_pred HHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862 633 ILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664 (671)
Q Consensus 633 l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q 664 (671)
|.+||||+|+|+|+++|+|||++++|+|+|.+
T Consensus 436 l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~ 467 (479)
T PRK07807 436 ITSGVRSSCTYAGARTLAEFHERAVVGVQSAA 467 (479)
T ss_pred HHHHHHHHHhhcCcCcHHHHHhCCEEEEECcc
Confidence 99999999999999999999999999999975
No 14
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=100.00 E-value=2.2e-57 Score=508.35 Aligned_cols=379 Identities=29% Similarity=0.404 Sum_probs=285.0
Q ss_pred ccccc-ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCC
Q psy3862 11 QKIIN-DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY 89 (671)
Q Consensus 11 ~~~~~-~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~ 89 (671)
.++|+ ..+||||||+|+|+++++.| ++||++|.|| +.+.+++||++++|+|+++.+||.||+++||+|+||.|+
T Consensus 13 ~~~~~~~~~ltfddv~l~p~~~~~~~-~~~~~~t~lt----~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~a 87 (505)
T PLN02274 13 EKLFNQGVSYTYDDVIFHPGYIDFPA-DAVDLSTRLS----RNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNN 87 (505)
T ss_pred HHHhcCCCCCCccceEecccccCcCC-cccccccccc----cccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCC
Confidence 34443 57899999999999999987 7999999998 889999999999999999999999999999999999999
Q ss_pred CHHHHHHhhhcCcc-----cccceEEecCC---------------------------------ChhhHHH-------HHH
Q psy3862 90 TLEEWKAFAVQNPD-----VIKHVAVSSGI---------------------------------SAKDLAG-------LKE 124 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~-----~~~~~~v~~G~---------------------------------~~~d~~r-------l~~ 124 (671)
++|+|..++++... ...++.+.+.. +.+|+.+ +.+
T Consensus 88 s~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~e 167 (505)
T PLN02274 88 TAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSE 167 (505)
T ss_pred CHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHH
Confidence 99998766642110 00111111111 1111110 112
Q ss_pred HHHh----------------------CCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc---------eEEEE-Eec
Q psy3862 125 ILAA----------------------LPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH---------VIIAG-NVV 169 (671)
Q Consensus 125 l~~a----------------------~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~---------~li~g-~v~ 169 (671)
+|.. .......++|..+ .. -...+.++. ..||++ .+++| ++.
T Consensus 168 IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~--~~~p~~~~~~~d~~~~l~vgaavg 244 (505)
T PLN02274 168 VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRV--KGYPKLGKPSVGKDGKLLVGAAIG 244 (505)
T ss_pred HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHH--hhCcCccccccCCCCCEEEEEEEc
Confidence 2221 1111112222111 10 111122221 236654 34444 564
Q ss_pred c----HHHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862 170 T----GEMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 170 t----~e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
+ .+++++|++||+|+|++|.+|||+ .++++++.+|+..+ ++|||+|.+.+++|+++|||+|+|
T Consensus 245 ~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~v--------i~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 245 TRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDV--------IGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcE--------EEecCCCHHHHHHHHHcCcCEEEE
Confidence 3 599999999999999999999996 23445555554322 599999999999999999999999
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~ 320 (671)
|+|+||+||||+++|+|+||++++++|++++++
T Consensus 317 g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~----------------------------------------------- 349 (505)
T PLN02274 317 GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ----------------------------------------------- 349 (505)
T ss_pred CCCCCccccCccccccCCCcccHHHHHHHHHHh-----------------------------------------------
Confidence 999999999999999999999999999999864
Q ss_pred eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHH
Q psy3862 321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG 400 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~ 400 (671)
.++|||+
T Consensus 350 ----------~~vpVIa--------------------------------------------------------------- 356 (505)
T PLN02274 350 ----------HGVPVIA--------------------------------------------------------------- 356 (505)
T ss_pred ----------cCCeEEE---------------------------------------------------------------
Confidence 2578888
Q ss_pred cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCc
Q psy3862 401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 480 (671)
Q Consensus 401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~ 480 (671)
+||+..+++++++|.+|||+||+|.+..|+.+|+++
T Consensus 357 --------------------------------------------dGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~ 392 (505)
T PLN02274 357 --------------------------------------------DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGE 392 (505)
T ss_pred --------------------------------------------eCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcc
Confidence 899999999999999999999999988888888877
Q ss_pred EEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEE
Q psy3862 481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI 560 (671)
Q Consensus 481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv 560 (671)
.+..+|.++|.|+||+|+.||..
T Consensus 393 ~~~~~g~~~k~yrgmgs~~a~~~--------------------------------------------------------- 415 (505)
T PLN02274 393 YFYQDGVRVKKYRGMGSLEAMTK--------------------------------------------------------- 415 (505)
T ss_pred eeeeCCeEEEEEeccchHHHHhc---------------------------------------------------------
Confidence 76666666666666666666642
Q ss_pred Eecccccccccchhhhcccccccceeeccccccccccccccchhccc-cccccCCCceEecccccCHHHHHHHHHHHHhh
Q psy3862 561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRS 639 (671)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs 639 (671)
++.+||+.+ .++.+|||+++.||||||++++|++|+|||||
T Consensus 416 --------------------------------------~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~ 457 (505)
T PLN02274 416 --------------------------------------GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQ 457 (505)
T ss_pred --------------------------------------cccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHH
Confidence 122333321 14579999999999999999999999999999
Q ss_pred hccccCcccccccccc-----cEEEEeccc
Q psy3862 640 ACTYVGASKLKELPRR-----ATFIRCTAQ 664 (671)
Q Consensus 640 ~m~y~Ga~~l~el~~~-----a~Fvrvt~q 664 (671)
+|+|+|+++|+|||+| ++|+|+|.+
T Consensus 458 ~~~y~g~~~~~~~~~~~~~~~~~f~~~t~~ 487 (505)
T PLN02274 458 GFQDLGASSLQSAHELLRSGTLRLEVRTGA 487 (505)
T ss_pred hhhhcCcchHHHHHhhcccCceEEEEEchh
Confidence 9999999999999999 799999975
No 15
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=100.00 E-value=2.2e-58 Score=487.08 Aligned_cols=305 Identities=21% Similarity=0.315 Sum_probs=261.8
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHH
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA 374 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v 374 (671)
||||||+|+|++++..||+||||+++|. ..++++|++++||||+++.+||+.++++|+++++|| +++|+|.+|+
T Consensus 2 ~~FddV~lvp~~lp~~s~~dVdlst~~~-----~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfv 75 (321)
T TIGR01306 2 FDYEDIQLIPNKCIVNSRSECDTSVTLG-----KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFI 75 (321)
T ss_pred CCcccEEEecCCCCCCCHHHceeeEEEC-----CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHH
Confidence 8999999999999999999999999997 678999999999999999999999999999999999 6999999999
Q ss_pred hcCcccccceeeecccChhh---HHHHHHcC--CcEEEEccccccccccccccccccccccccccccccccCceeecccc
Q psy3862 375 VQNPDVIKHVADGGCTSPGD---VAKAMGAG--ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCT 449 (671)
Q Consensus 375 ~~~~~~~~~v~~~~~~~~~~---~~~l~~aG--~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v 449 (671)
++.++....+..+.+++++| +.+|+++| +|+|++| +|||||.++++.++.++..+|.. .++.|||
T Consensus 76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D-~ahg~s~~~~~~i~~i~~~~p~~---------~vi~GnV 145 (321)
T TIGR01306 76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITID-IAHGHSNSVINMIKHIKTHLPDS---------FVIAGNV 145 (321)
T ss_pred HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEe-CccCchHHHHHHHHHHHHhCCCC---------EEEEecC
Confidence 88654333677778887655 55668999 7999999 99999999999988888877655 3678889
Q ss_pred CchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCc--ccHHHHHhhccccccccccCCceEeeecCCC
Q psy3862 450 SPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGM--SSTTAMDKHAGGVAEYRAAEGKTVQVPYRGD 526 (671)
Q Consensus 450 ~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~--~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gd 526 (671)
.+.+.++ ++++|||+|+||+ ||| ++||||++ +|.|. +|++|+.+|+.+++-...++|+ |+++||
T Consensus 146 ~t~e~a~~l~~aGad~I~V~~-G~G-~~~~tr~~--------~g~g~~~~~l~ai~ev~~a~~~pVIadGG---Ir~~~D 212 (321)
T TIGR01306 146 GTPEAVRELENAGADATKVGI-GPG-KVCITKIK--------TGFGTGGWQLAALRWCAKAARKPIIADGG---IRTHGD 212 (321)
T ss_pred CCHHHHHHHHHcCcCEEEECC-CCC-ccccceee--------eccCCCchHHHHHHHHHHhcCCeEEEECC---cCcHHH
Confidence 9999999 5799999999996 999 99999986 34455 4999999998765433456664 799999
Q ss_pred HHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccccccc
Q psy3862 527 VNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATF 601 (671)
Q Consensus 527 i~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~ 601 (671)
|+|||+ ||+|++|||++|+||+.+. .+| +++|.||||.+. +.+
T Consensus 213 i~KALa~GAd~Vmig~~~ag~~Espg~~~~-------------------------~~g-~~~k~y~g~~~~--~~~---- 260 (321)
T TIGR01306 213 IAKSIRFGASMVMIGSLFAGHEESPGETVE-------------------------KDG-KLYKEYFGSASE--FQK---- 260 (321)
T ss_pred HHHHHHcCCCEEeechhhcCcccCCCceEe-------------------------eCC-eEHhhhcCchhh--hcc----
Confidence 999999 9999999999999999522 235 578999998653 221
Q ss_pred chhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc-ccc
Q psy3862 602 IRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ-LNN 667 (671)
Q Consensus 602 ~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q-~n~ 667 (671)
..++.+||++++||||||++++|++|+|||||+|+|+|+++|+||| +++|+++|++ .|+
T Consensus 261 ------~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~~~~~~ 320 (321)
T TIGR01306 261 ------GEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKNSIFNG 320 (321)
T ss_pred ------cccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEecCCcCC
Confidence 1223359999999999999999999999999999999999999999 8999999987 553
No 16
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=100.00 E-value=2.8e-57 Score=503.44 Aligned_cols=362 Identities=35% Similarity=0.545 Sum_probs=268.5
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHh
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF 97 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~ 97 (671)
+||||||+|+|+++++.| ++|||+|+|| ++++|++||+++||+++|+.+||.+|++.||+|+||+||++|+|.++
T Consensus 1 ~~t~ddv~l~p~~~~~~~-~~~~~~~~~~----~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~ 75 (450)
T TIGR01302 1 GLTFDDVLLLPGFIDVEP-DDVDLSTRIT----RNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ 75 (450)
T ss_pred CCCccceEecccccccCc-cccccccccc----cccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH
Confidence 589999999999999987 6999999998 89999999999999999999999999999999999999999999888
Q ss_pred hhcC---ccc--ccceEEecCCChh---------------------------------hHH-------HHHHHH------
Q psy3862 98 AVQN---PDV--IKHVAVSSGISAK---------------------------------DLA-------GLKEIL------ 126 (671)
Q Consensus 98 i~~~---p~~--~~~~~v~~G~~~~---------------------------------d~~-------rl~~l~------ 126 (671)
+++. .+. ..++.+....+.. |+. .+.++|
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~ 155 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVI 155 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCE
Confidence 7521 110 1111111111111 110 011111
Q ss_pred ---------------HhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc------e-EEEEEecc----HHHHHHH
Q psy3862 127 ---------------AALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH------V-IIAGNVVT----GEMVEEL 177 (671)
Q Consensus 127 ---------------~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~------~-li~g~v~t----~e~a~~L 177 (671)
.......++++|.. |.. -...+.++.+ .||.. . ++.|++.+ .+++++|
T Consensus 156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~--~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 156 TVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR--KFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc--cCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 11100111222211 110 0011111111 23432 2 45556654 5899999
Q ss_pred HHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccce
Q psy3862 178 ILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252 (671)
Q Consensus 178 i~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~ 252 (671)
+++|+|+|.+|.+|||+ .++++++++|++++ ++|||.|.+++++|+++|||+|+||+||||+||||.
T Consensus 233 ~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~v--------i~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~ 304 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDI--------IAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304 (450)
T ss_pred HHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCE--------EEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccce
Confidence 99999999999999986 23344444444322 699999999999999999999999999999999999
Q ss_pred ecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeC
Q psy3862 253 KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQG 332 (671)
Q Consensus 253 V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~ 332 (671)
++|+|+||++|+.+|++++++. +
T Consensus 305 ~~~~g~p~~~~i~~~~~~~~~~---------------------------------------------------------~ 327 (450)
T TIGR01302 305 VAGVGVPQITAVYDVAEYAAQS---------------------------------------------------------G 327 (450)
T ss_pred ecCCCccHHHHHHHHHHHHhhc---------------------------------------------------------C
Confidence 9999999999999999998753 4
Q ss_pred cceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc
Q psy3862 333 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412 (671)
Q Consensus 333 iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a 412 (671)
+|||+
T Consensus 328 vpvia--------------------------------------------------------------------------- 332 (450)
T TIGR01302 328 IPVIA--------------------------------------------------------------------------- 332 (450)
T ss_pred CeEEE---------------------------------------------------------------------------
Confidence 78877
Q ss_pred ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862 413 AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF 492 (671)
Q Consensus 413 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g 492 (671)
+||+..+++++|+|.+|||+||+|.+.+|+.+||++++..+|+++|.|
T Consensus 333 --------------------------------dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~y 380 (450)
T TIGR01302 333 --------------------------------DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQY 380 (450)
T ss_pred --------------------------------eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEE
Confidence 899999999999999999999999877776667766666666666666
Q ss_pred eCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccc
Q psy3862 493 YGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDT 572 (671)
Q Consensus 493 ~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~ 572 (671)
+||+|+.||..
T Consensus 381 rgm~s~~a~~~--------------------------------------------------------------------- 391 (450)
T TIGR01302 381 RGMGSLGAMTK--------------------------------------------------------------------- 391 (450)
T ss_pred eccchHHHHhc---------------------------------------------------------------------
Confidence 66666665542
Q ss_pred hhhhcccccccceeeccccccccccccccchhccc---cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccc
Q psy3862 573 VQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ---LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL 649 (671)
Q Consensus 573 ~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~---~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l 649 (671)
++.+||+.. .++.+|||+++.||||||++++|++|+|||||+|+|+|+++|
T Consensus 392 --------------------------~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~ 445 (450)
T TIGR01302 392 --------------------------GSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSI 445 (450)
T ss_pred --------------------------cccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcH
Confidence 222333322 245799999999999999999999999999999999999999
Q ss_pred ccccc
Q psy3862 650 KELPR 654 (671)
Q Consensus 650 ~el~~ 654 (671)
+|||+
T Consensus 446 ~~~~~ 450 (450)
T TIGR01302 446 DELRE 450 (450)
T ss_pred HHHhC
Confidence 99984
No 17
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-55 Score=495.15 Aligned_cols=374 Identities=36% Similarity=0.578 Sum_probs=278.0
Q ss_pred cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862 15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 94 (671)
Q Consensus 15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq 94 (671)
...+||||||+|+|+++++.| ++||++|+|| +.+.+++||+++||+++|+.+||.++++.||+|+||+|+++|+|
T Consensus 5 ~~~~~t~ddv~l~p~~~~~~~-~~~~~~t~l~----~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~ 79 (486)
T PRK05567 5 AKEALTFDDVLLVPAHSEVLP-NDVDLSTQLT----KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQ 79 (486)
T ss_pred ccCCcCccceEecccccCcCc-ccccccchhh----hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHH
Confidence 346899999999999999987 6999999998 78999999999999999999999999999999999999999998
Q ss_pred HHhhhcC---ccc--ccceEEec-----------------------------C-CChhhHH-------HHHHHH------
Q psy3862 95 KAFAVQN---PDV--IKHVAVSS-----------------------------G-ISAKDLA-------GLKEIL------ 126 (671)
Q Consensus 95 ~~~i~~~---p~~--~~~~~v~~-----------------------------G-~~~~d~~-------rl~~l~------ 126 (671)
.+++++. .+. ..+..+.. | ++..|+. .+.++|
T Consensus 80 ~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v 159 (486)
T PRK05567 80 AEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLV 159 (486)
T ss_pred HHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCE
Confidence 7776421 110 00111110 0 0111110 111122
Q ss_pred ---------------HhCCCce-EEEeeccCCCChH---HHHHHHHHHHhCCCc------e-EEEEEec----cHHHHHH
Q psy3862 127 ---------------AALPEIE-YICLDVANGYTQT---FVDFVRRIREMYPKH------V-IIAGNVV----TGEMVEE 176 (671)
Q Consensus 127 ---------------~a~~~~d-~Ivld~a~G~~~~---~~~~ik~lr~~~P~~------~-li~g~v~----t~e~a~~ 176 (671)
... +.. .+++| .++.... ..+.++.+ .+|.. . ++++++. +.+++++
T Consensus 160 ~v~~~~sl~eal~~m~~~-~~~~lpVVD-e~g~lvGiIT~~DLl~~~--~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~ 235 (486)
T PRK05567 160 TVPEGTTLEEALELLHEH-RIEKLPVVD-DNGRLKGLITVKDIEKAE--EFPNACKDEQGRLRVGAAVGVGADNEERAEA 235 (486)
T ss_pred EECCCCCHHHHHHHHHHc-CCCEEEEEc-CCCcEEEEEEhHHhhhhh--hCCCcccccCCCEEEEeecccCcchHHHHHH
Confidence 111 112 22333 2222111 11222221 24432 2 3455554 4689999
Q ss_pred HHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccc
Q psy3862 177 LILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251 (671)
Q Consensus 177 Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr 251 (671)
|+++|+|+|++|.+|||+. ++.+++++|++++ ++|||.|.+++++|+++|||+|+||+||||+||||
T Consensus 236 L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~v--------i~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r 307 (486)
T PRK05567 236 LVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQI--------IAGNVATAEAARALIEAGADAVKVGIGPGSICTTR 307 (486)
T ss_pred HHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCE--------EEeccCCHHHHHHHHHcCCCEEEECCCCCccccce
Confidence 9999999999999999851 2223333333222 68999999999999999999999999999999999
Q ss_pred eecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862 252 LKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ 331 (671)
Q Consensus 252 ~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~ 331 (671)
.++|+|+||++++++|++++++.
T Consensus 308 ~~~~~g~p~~~~~~~~~~~~~~~--------------------------------------------------------- 330 (486)
T PRK05567 308 IVAGVGVPQITAIADAAEAAKKY--------------------------------------------------------- 330 (486)
T ss_pred eecCCCcCHHHHHHHHHHHhccC---------------------------------------------------------
Confidence 99999999999999999988642
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccc
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGM 411 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~ 411 (671)
++|||+
T Consensus 331 ~~~via-------------------------------------------------------------------------- 336 (486)
T PRK05567 331 GIPVIA-------------------------------------------------------------------------- 336 (486)
T ss_pred CCeEEE--------------------------------------------------------------------------
Confidence 477777
Q ss_pred cccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEE
Q psy3862 412 FAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKL 491 (671)
Q Consensus 412 a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~ 491 (671)
+||+..+++++|++.+|||+||+|.+.+|+.++|++.+..+|+++|.
T Consensus 337 ---------------------------------dGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~ 383 (486)
T PRK05567 337 ---------------------------------DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKS 383 (486)
T ss_pred ---------------------------------cCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEE
Confidence 79999999999999999999999986777666666666556666666
Q ss_pred eeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccccc
Q psy3862 492 FYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND 571 (671)
Q Consensus 492 g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~ 571 (671)
|+||+|..||..
T Consensus 384 y~gm~s~~a~~~-------------------------------------------------------------------- 395 (486)
T PRK05567 384 YRGMGSLGAMSK-------------------------------------------------------------------- 395 (486)
T ss_pred EeccchHHHHhc--------------------------------------------------------------------
Confidence 666666655532
Q ss_pred chhhhcccccccceeeccccccccccccccchhcc---ccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccc
Q psy3862 572 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTA---QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK 648 (671)
Q Consensus 572 ~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~---~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~ 648 (671)
++.+||+. ..++.+|||+++.||||||++++|++|.|||||+|+|+|++|
T Consensus 396 ---------------------------~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~ 448 (486)
T PRK05567 396 ---------------------------GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAAT 448 (486)
T ss_pred ---------------------------ccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCc
Confidence 22233332 225679999999999999999999999999999999999999
Q ss_pred ccccccccEEEEeccc
Q psy3862 649 LKELPRRATFIRCTAQ 664 (671)
Q Consensus 649 l~el~~~a~Fvrvt~q 664 (671)
|+|||++++|+++|.+
T Consensus 449 ~~~~~~~~~~~~~t~~ 464 (486)
T PRK05567 449 IEELREKAEFVRITGA 464 (486)
T ss_pred HHHHHhcCeEEEEChh
Confidence 9999999999999975
No 18
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=100.00 E-value=5e-56 Score=474.37 Aligned_cols=312 Identities=28% Similarity=0.392 Sum_probs=264.7
Q ss_pred cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHH
Q psy3862 294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF 373 (671)
Q Consensus 294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~ 373 (671)
+||||||+|+|++|++. |+||||+|+|+ +.+.+++|||+||||+||+++||++|++.||||+||+++++|+|.++
T Consensus 1 ~~~~ddv~l~p~~~~~~-~~~vdl~t~l~----~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~ 75 (325)
T cd00381 1 GLTFDDVLLVPGYSTVL-PSEVDLSTKLT----KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEE 75 (325)
T ss_pred CCCcccEEEeCCCCCCC-HHHceeeEEec----CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHH
Confidence 58999999999999999 59999999998 35789999999999999999999999999999999999999999999
Q ss_pred HhcCcccccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccC
Q psy3862 374 AVQNPDVIKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTS 450 (671)
Q Consensus 374 v~~~~~~~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~ 450 (671)
+++.+..+. +..+.+.++ ++++.++++|+|+|+|| ++|||+.+..++++.++..+|.+ .|+.|++.
T Consensus 76 i~~vk~~l~-v~~~~~~~~~~~~~~~~l~eagv~~I~vd-~~~G~~~~~~~~i~~ik~~~p~v---------~Vi~G~v~ 144 (325)
T cd00381 76 VRKVKGRLL-VGAAVGTREDDKERAEALVEAGVDVIVID-SAHGHSVYVIEMIKFIKKKYPNV---------DVIAGNVV 144 (325)
T ss_pred HHHhccCce-EEEecCCChhHHHHHHHHHhcCCCEEEEE-CCCCCcHHHHHHHHHHHHHCCCc---------eEEECCCC
Confidence 988764322 223333333 44566689999999999 89999988888888777777644 24568889
Q ss_pred chhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCC
Q psy3862 451 PGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGD 526 (671)
Q Consensus 451 t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gd 526 (671)
+.+.++ ++++|||+|+||+ ||| ++|+|+.+ .|.|.|+++++.+++..+.++ ..++|. |.+++|
T Consensus 145 t~~~A~~l~~aGaD~I~vg~-g~G-~~~~t~~~--------~g~g~p~~~~i~~v~~~~~~~~vpVIA~GG---I~~~~d 211 (325)
T cd00381 145 TAEAARDLIDAGADGVKVGI-GPG-SICTTRIV--------TGVGVPQATAVADVAAAARDYGVPVIADGG---IRTSGD 211 (325)
T ss_pred CHHHHHHHHhcCCCEEEECC-CCC-cCccccee--------CCCCCCHHHHHHHHHHHHhhcCCcEEecCC---CCCHHH
Confidence 988888 6799999999995 999 89999875 578999999999987665543 235553 689999
Q ss_pred HHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccccccc
Q psy3862 527 VNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATF 601 (671)
Q Consensus 527 i~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~ 601 (671)
++||++ ||+|++|++++|||++++. .+| +++|.||||+|+.+|.+. +.
T Consensus 212 i~kAla~GA~~VmiGt~fa~t~Es~g~~~~-------------------------~~g-~~~~~~~g~~s~~~~~~~-~~ 264 (325)
T cd00381 212 IVKALAAGADAVMLGSLLAGTDESPGEYIE-------------------------ING-KRYKEYRGMGSLGAMKKG-GG 264 (325)
T ss_pred HHHHHHcCCCEEEecchhcccccCCCcEEE-------------------------ECC-eeeeeEecccchhhhhcC-cc
Confidence 999999 9999999999999998522 234 467899999999999854 45
Q ss_pred chhccc-cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEe
Q psy3862 602 IRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC 661 (671)
Q Consensus 602 ~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrv 661 (671)
+||+.. .++++|||++..||||||++++|+||.|||||+|+|+|+++|+|||++++|+|+
T Consensus 265 ~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~~~~ 325 (325)
T cd00381 265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVRI 325 (325)
T ss_pred ccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeEEeC
Confidence 688764 367899999999999999999999999999999999999999999999999985
No 19
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=100.00 E-value=3.9e-54 Score=478.71 Aligned_cols=369 Identities=34% Similarity=0.502 Sum_probs=282.7
Q ss_pred cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862 15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 94 (671)
Q Consensus 15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq 94 (671)
...+||||||+|+|+++++.|+++|||+|++| .+|++||++||||+||+.+||+|||+.||+|+||+||++|+|
T Consensus 8 ~~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~q 81 (475)
T TIGR01303 8 PGYDLTYNDVFMVPSRSEVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAV 81 (475)
T ss_pred CCCCCCccceEEccCccCccCCCceeeccccc------CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence 34689999999999999999877999999986 367999999999999999999999999999999999999999
Q ss_pred HHhhhcCc---cc-ccceEEecCCC-----------------------------hhhH----------------------
Q psy3862 95 KAFAVQNP---DV-IKHVAVSSGIS-----------------------------AKDL---------------------- 119 (671)
Q Consensus 95 ~~~i~~~p---~~-~~~~~v~~G~~-----------------------------~~d~---------------------- 119 (671)
.+.+++.+ .. ..++.+....+ .+|+
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~ 161 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA 161 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence 88775211 00 11111111111 1111
Q ss_pred ----HHHHHHHHhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc-----e-EEEEEec----cHHHHHHHHHCCC
Q psy3862 120 ----AGLKEILAALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH-----V-IIAGNVV----TGEMVEELILSGA 182 (671)
Q Consensus 120 ----~rl~~l~~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~-----~-li~g~v~----t~e~a~~Li~AGa 182 (671)
..+.++|.........++|.. +.. -...+.++. +.+|.. . .+++.+. ..++++.|+++|+
T Consensus 162 ~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~--~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 162 DTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA--TIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH--HhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 111111111111111222211 110 111122221 123321 1 2333332 3699999999999
Q ss_pred cEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862 183 DVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG 257 (671)
Q Consensus 183 D~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~ 257 (671)
|+|++|.+|||+ .++++++.+|++++ ++|||+|.+++++|+++|||+|+||+||||+||||.++|+|
T Consensus 239 d~i~~D~a~g~~~~~~~~i~~i~~~~~~~~v--------i~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g 310 (475)
T TIGR01303 239 DVLVIDTAHGHQVKMISAIKAVRALDLGVPI--------VAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVG 310 (475)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHCCCCeE--------EEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCC
Confidence 999999999997 23344444444332 69999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862 258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA 337 (671)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa 337 (671)
+||++|+++|+++++++ ++||||
T Consensus 311 ~~~~~a~~~~~~~~~~~---------------------------------------------------------~~~via 333 (475)
T TIGR01303 311 RPQFSAVLECAAEARKL---------------------------------------------------------GGHVWA 333 (475)
T ss_pred CchHHHHHHHHHHHHHc---------------------------------------------------------CCcEEE
Confidence 99999999999999742 578887
Q ss_pred cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862 338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ 417 (671)
Q Consensus 338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~ 417 (671)
T Consensus 334 -------------------------------------------------------------------------------- 333 (475)
T TIGR01303 334 -------------------------------------------------------------------------------- 333 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEE-eCCeEEEEeeCcc
Q psy3862 418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIE-KDGKKVKLFYGMS 496 (671)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~-~~g~~~k~g~G~~ 496 (671)
+||+..+++++|+|.+|||+||+|.+.+|+.++|++++. .+|.++|.|+||+
T Consensus 334 ---------------------------dGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmg 386 (475)
T TIGR01303 334 ---------------------------DGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMA 386 (475)
T ss_pred ---------------------------eCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEeccc
Confidence 799999999999999999999999999999999999998 8999999999999
Q ss_pred cHHHHHhhcccccccc-------ccCCceE----eeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 497 STTAMDKHAGGVAEYR-------AAEGKTV----QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 497 q~tAi~~~a~~~~~y~-------~~~G~~v----~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
|..||.. .+..++|+ .++|... .++|+|++.+.|..|+||+++++.|+|...++|++.+++|++++..
T Consensus 387 s~~a~~~-~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~~ 465 (475)
T TIGR01303 387 SKRAVVA-RTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSGA 465 (475)
T ss_pred CHHHHhh-ccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEEEEccc
Confidence 9999974 23456775 3467653 3588999999999999999999999999999999999999998775
No 20
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=7.1e-53 Score=456.81 Aligned_cols=325 Identities=36% Similarity=0.619 Sum_probs=283.8
Q ss_pred cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862 15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 94 (671)
Q Consensus 15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq 94 (671)
...+||||||+|+|+++++.| ++||++|+|+ +.+.+++||+++||+++++.+||.|+|++||||+||+++++|+|
T Consensus 6 ~~~~ltfdDvll~P~~s~~~~-~~vdl~t~lt----~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l 80 (404)
T PRK06843 6 TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ 80 (404)
T ss_pred cccccCccceEEccCCCccCH-Hhccccchhh----hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHH
Confidence 346899999999999999985 8999999998 78999999999999999999999999999999999999999998
Q ss_pred HHhhhcC--------------------------------------------cc----cccc--eEEecCCChhhHHHHHH
Q psy3862 95 KAFAVQN--------------------------------------------PD----VIKH--VAVSSGISAKDLAGLKE 124 (671)
Q Consensus 95 ~~~i~~~--------------------------------------------p~----~~~~--~~v~~G~~~~d~~rl~~ 124 (671)
.+++++. |. ..++ +++++|+.+++++++++
T Consensus 81 ~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~ 160 (404)
T PRK06843 81 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEE 160 (404)
T ss_pred HHHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHH
Confidence 8777421 11 0111 33456677777899999
Q ss_pred HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862 125 ILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS 204 (671)
Q Consensus 125 l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~ 204 (671)
++++ ++|+|++|.+|+++..+.++++++|+.||+..+++|++.|.+.++.|+++|||+|
T Consensus 161 lv~a--GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I------------------- 219 (404)
T PRK06843 161 LVKA--HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCL------------------- 219 (404)
T ss_pred HHhc--CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEE-------------------
Confidence 9999 8999999999999999999999999999986666666666666665555555555
Q ss_pred cchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhh
Q psy3862 205 DFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTA 284 (671)
Q Consensus 205 ~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (671)
+||+||||+||||.++|+|+||++++++|++++++
T Consensus 220 ----------------------------------~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~----------- 254 (404)
T PRK06843 220 ----------------------------------KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKN----------- 254 (404)
T ss_pred ----------------------------------EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-----------
Confidence 89999999999999999999999999999998864
Q ss_pred ccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccC
Q psy3862 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY 364 (671)
Q Consensus 285 ~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~ 364 (671)
.++|||+
T Consensus 255 ----------------------------------------------~~vpVIA--------------------------- 261 (404)
T PRK06843 255 ----------------------------------------------TNICIIA--------------------------- 261 (404)
T ss_pred ----------------------------------------------cCCeEEE---------------------------
Confidence 2478887
Q ss_pred CCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCcee
Q psy3862 365 YTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV 444 (671)
Q Consensus 365 ~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 444 (671)
T Consensus 262 -------------------------------------------------------------------------------- 261 (404)
T PRK06843 262 -------------------------------------------------------------------------------- 261 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc----------cc
Q psy3862 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR----------AA 514 (671)
Q Consensus 445 ~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~----------~~ 514 (671)
+||+..+++++|+|.+|||+||+|....|+.+||++++..+|+++|.|+||+|..||.. +..++|+ .+
T Consensus 262 dGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~--~~~~ry~~~~~~~~~~~v~ 339 (404)
T PRK06843 262 DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR--GSKSRYFQLENNEPKKLVP 339 (404)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhc--cccccccccccccccccCC
Confidence 89999999999999999999999999999999999999999999999999999999974 2345554 36
Q ss_pred CCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 515 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 515 ~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
+|..+.++|.|++.+.+..++||+++++.|+|+..++|++.+++|+.++.+
T Consensus 340 eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~ 390 (404)
T PRK06843 340 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 390 (404)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchh
Confidence 788888999999999999999999999999999999999999999998774
No 21
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-52 Score=466.84 Aligned_cols=368 Identities=35% Similarity=0.497 Sum_probs=280.3
Q ss_pred ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862 16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK 95 (671)
Q Consensus 16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~ 95 (671)
..+||||||+|+|+++++.|+++|||+|++ ++.|++||++||||+||+.+||.+|++.||+|+||+|+++++|.
T Consensus 10 ~~~ltfddvll~p~~~~~~~~~~v~~~t~~------~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~ 83 (479)
T PRK07807 10 AYDLTYDDVFLVPSRSDVGSRFDVDLSTAD------GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVA 83 (479)
T ss_pred CcCcCccceEecccccCccCCCceecccCC------CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHH
Confidence 478999999999999999987799999975 56899999999999999999999999999999999999999988
Q ss_pred HhhhcCc--c-c-ccceEEecCC------------------------------ChhhH----------------------
Q psy3862 96 AFAVQNP--D-V-IKHVAVSSGI------------------------------SAKDL---------------------- 119 (671)
Q Consensus 96 ~~i~~~p--~-~-~~~~~v~~G~------------------------------~~~d~---------------------- 119 (671)
+.+++.. + . ..++.+.... +.+|+
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~ 163 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA 163 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence 7764211 0 0 0111111111 11111
Q ss_pred ----HHHHHHHHhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc-----eE-EEEEe----ccHHHHHHHHHCCC
Q psy3862 120 ----AGLKEILAALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH-----VI-IAGNV----VTGEMVEELILSGA 182 (671)
Q Consensus 120 ----~rl~~l~~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~-----~l-i~g~v----~t~e~a~~Li~AGa 182 (671)
..+.++|.........++|.. +.. -...+.++. +.+|.. .+ +++.+ ...+.++.|+++|+
T Consensus 164 d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~--~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGv 240 (479)
T PRK07807 164 GTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRA--TIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGV 240 (479)
T ss_pred CCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH--hhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCC
Confidence 111111111111111222211 110 011111111 113211 11 22222 23589999999999
Q ss_pred cEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862 183 DVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG 257 (671)
Q Consensus 183 D~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~ 257 (671)
|+|++|.+|||+ .++++++++|++.+ +||||+|.+++++|+++|||+|||||||||+||||.++|+|
T Consensus 241 d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v--------~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~ 312 (479)
T PRK07807 241 DVLVVDTAHGHQEKMLEALRAVRALDPGVPI--------VAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG 312 (479)
T ss_pred CEEEEeccCCccHHHHHHHHHHHHHCCCCeE--------EeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc
Confidence 999999999996 24456666665433 69999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862 258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA 337 (671)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa 337 (671)
+||+|||++|+++|+++ ++|+||
T Consensus 313 ~p~~~av~~~~~~~~~~---------------------------------------------------------~~~via 335 (479)
T PRK07807 313 RPQFSAVLECAAAAREL---------------------------------------------------------GAHVWA 335 (479)
T ss_pred hhHHHHHHHHHHHHHhc---------------------------------------------------------CCcEEe
Confidence 99999999999999753 577877
Q ss_pred cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862 338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ 417 (671)
Q Consensus 338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~ 417 (671)
T Consensus 336 -------------------------------------------------------------------------------- 335 (479)
T PRK07807 336 -------------------------------------------------------------------------------- 335 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEE-eCCeEEEEeeCcc
Q psy3862 418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIE-KDGKKVKLFYGMS 496 (671)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~-~~g~~~k~g~G~~ 496 (671)
+||+..+++++++|.+|||+||+|.+++|+.+++++++. .+|.++|.|+||+
T Consensus 336 ---------------------------~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmg 388 (479)
T PRK07807 336 ---------------------------DGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA 388 (479)
T ss_pred ---------------------------cCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccc
Confidence 799999999999999999999999999999999999988 8999999999999
Q ss_pred cHHHHHhhcccccccc-------ccCCceEe----eecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 497 STTAMDKHAGGVAEYR-------AAEGKTVQ----VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 497 q~tAi~~~a~~~~~y~-------~~~G~~v~----i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
|..|+.+. ...++|+ .++|.... ++|.|++.+.+..|.|++++++.|+|+..++|++.++.|+.++..
T Consensus 389 s~~a~~~~-~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~ 467 (479)
T PRK07807 389 SARAVAAR-TAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAA 467 (479)
T ss_pred cHHHHhcc-cCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECcc
Confidence 99999752 2334554 25664443 478999999999999999999999999999999999999998775
No 22
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=4.7e-53 Score=472.87 Aligned_cols=382 Identities=27% Similarity=0.397 Sum_probs=286.5
Q ss_pred cccccCCCCCceEEecCCcC--CCCCCcceeeeeeec--ccCC-CcccCceEEecCCCccccHHHHHHHHHcCCeEEeec
Q psy3862 13 IINDIKLDFKDVMLRPKRST--LKSRSEVDITRTFTF--RNSG-KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK 87 (671)
Q Consensus 13 ~~~~~~l~fdDv~lvP~~~~--~~~~~~Vdlst~lt~--r~~~-~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~ 87 (671)
++++.+||||||+|+|++++ +.| ++|||+|+||+ +-+. ++.|++|+++++|+++++..||++|++.||||+||+
T Consensus 4 ~~~~~~~tfddvll~P~~~~~~~~~-~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~ 82 (502)
T PRK07107 4 YFEEPSRTFSEYLLVPGLSSKECVP-ANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFG 82 (502)
T ss_pred eecCCCccccceEEccCCCCCCcCc-cceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeC
Confidence 45678999999999999997 465 79999999981 0111 888999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhhcCcc-----cccceEEe--------------------------------cC-CChhhHH--------H
Q psy3862 88 YYTLEEWKAFAVQNPD-----VIKHVAVS--------------------------------SG-ISAKDLA--------G 121 (671)
Q Consensus 88 n~~~Eeq~~~i~~~p~-----~~~~~~v~--------------------------------~G-~~~~d~~--------r 121 (671)
|+++|+|.+++++..+ ...+..+. .| ++..|+. .
T Consensus 83 n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~ 162 (502)
T PRK07107 83 SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTK 162 (502)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCC
Confidence 9999999877531100 00000000 00 1111111 1
Q ss_pred HHHHHH----------------------hCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc------eE-EEEEec
Q psy3862 122 LKEILA----------------------ALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH------VI-IAGNVV 169 (671)
Q Consensus 122 l~~l~~----------------------a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~------~l-i~g~v~ 169 (671)
+.++|. ...-....++|.. +.. -...+.++ ++.||+. .+ +++.+.
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk--~~~~P~a~~d~~grL~V~~av~ 239 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDS--HKENPLELLDSSKRYVVGAGIN 239 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHh--cccChhhhhhhccCeeeeeccC
Confidence 222332 1111111222211 111 01111222 1235532 23 333443
Q ss_pred ---cHHHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCc-chhhhhccccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862 170 ---TGEMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSD-FFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 170 ---t~e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~-~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
..+++++|+++|+|+|++|.+|||+ .++++++.+|. +.+ .||||+|.+++++|+++|||+|||
T Consensus 240 ~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V--------~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 240 TRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKV--------GAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hhhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceE--------EeccccCHHHHHHHHHcCCCEEEE
Confidence 2589999999999999999999996 23445544442 222 699999999999999999999999
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~ 320 (671)
||||||+||||+++|+|+||+|||++|+++++++
T Consensus 312 g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~---------------------------------------------- 345 (502)
T PRK07107 312 GIGGGSICITREQKGIGRGQATALIEVAKARDEY---------------------------------------------- 345 (502)
T ss_pred CCCCCcCcccccccCCCccHHHHHHHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999999998642
Q ss_pred eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHH
Q psy3862 321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG 400 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~ 400 (671)
++.++ .++|||+
T Consensus 346 --~~~~g---~~~~via--------------------------------------------------------------- 357 (502)
T PRK07107 346 --FEETG---VYIPICS--------------------------------------------------------------- 357 (502)
T ss_pred --HhhcC---CcceEEE---------------------------------------------------------------
Confidence 00000 1388888
Q ss_pred cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCc
Q psy3862 401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 480 (671)
Q Consensus 401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~ 480 (671)
+||+..++|++|+|.+|||+||+|.+.+|+.++|++
T Consensus 358 --------------------------------------------dgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~ 393 (502)
T PRK07107 358 --------------------------------------------DGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTN 393 (502)
T ss_pred --------------------------------------------cCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCc
Confidence 899999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCcccHHHHHhhcc----ccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCc
Q psy3862 481 LIEKDGKKVKLFYGMSSTTAMDKHAG----GVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR 556 (671)
Q Consensus 481 ~v~~~g~~~k~g~G~~q~tAi~~~a~----~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~ 556 (671)
++..+|+++|.|+||+|..||.. .. ...++..++|....++|+|++.+.+..++||++++++|+|+..++|++.+
T Consensus 394 ~~~~~g~~~k~yrgm~s~~a~~~-~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 394 KVNINGNYMKEYWGEGSNRARNW-QRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred EEEECCEEEEEeecccCHhhhhc-cccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 99999999999999999999941 00 11123467898888999999999999999999999999999999999999
Q ss_pred ceEEEeccc
Q psy3862 557 ATFIRCTAQ 565 (671)
Q Consensus 557 a~fv~~~~~ 565 (671)
++|+.++.+
T Consensus 473 ~~f~~~t~~ 481 (502)
T PRK07107 473 AKITLVSST 481 (502)
T ss_pred CeEEEECcc
Confidence 999998775
No 23
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-50 Score=433.90 Aligned_cols=295 Identities=21% Similarity=0.263 Sum_probs=237.6
Q ss_pred cceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc---
Q psy3862 286 AQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH--- 362 (671)
Q Consensus 286 ~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih--- 362 (671)
|+-.....+|+||||+|+|+||++.| +||||+|++. .+++++||+.+|||+||+++||.+++++||||+||
T Consensus 7 ~~~~~~~~~~~fddV~lvp~~~~~~~-~dvdls~~~~-----~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~g 80 (368)
T PRK08649 7 GRGKTARRAYGLDEIAIVPSRRTRDP-EDVSTSWQID-----AYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEG 80 (368)
T ss_pred cCCccccccCCcceEEEeCCCCCCCH-HHceeeeeec-----ceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecc
Confidence 34445677999999999999999999 9999999885 78899999999999999999999999999999999
Q ss_pred ---cCCCHHHHHHHHhcCc------------------cc----ccceeeecc-----cCh----hhHHHHHHcCCcEEEE
Q psy3862 363 ---KYYTLEEWKAFAVQNP------------------DV----IKHVADGGC-----TSP----GDVAKAMGAGADFVML 408 (671)
Q Consensus 363 ---r~~~~e~~~~~v~~~~------------------~~----~~~v~~~~~-----~~~----~~~~~l~~aG~d~i~i 408 (671)
||+++|+|.+++.+.+ ++ ++.+..++. .++ +..+.++++|+|+|++
T Consensus 81 l~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~v 160 (368)
T PRK08649 81 LWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVI 160 (368)
T ss_pred ccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEE
Confidence 9999999999987531 11 111221111 122 3345558999999999
Q ss_pred cc----ccccccc-cccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862 409 GG----MFAGHDQ-SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 409 d~----~a~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
++ .+|+|+. +..++.+.++. . +-.|++||+.+.+.++ ++++|||+||||+ |+| +.|||+.+
T Consensus 161 hgrt~~~~h~~~~~~~~~i~~~ik~----------~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~-G~G-s~~~t~~~ 227 (368)
T PRK08649 161 QGTVVSAEHVSKEGEPLNLKEFIYE----------L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGI-GPG-AACTSRGV 227 (368)
T ss_pred eccchhhhccCCcCCHHHHHHHHHH----------C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECC-CCC-cCCCCccc
Confidence 75 4566665 45554333332 1 1123557899999988 6799999999996 999 89999865
Q ss_pred EeCCeEEEEeeCcccHHHHHhhccccccccccC-CceEe------eecCCCHHHHHH-----HHHhhHhHhccccCcccc
Q psy3862 483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAE-GKTVQ------VPYRGDVNDTVQ-----DILGGLRSACTYVGASKL 550 (671)
Q Consensus 483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~-G~~v~------i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i 550 (671)
+|+|+||++|+.+|+.++++|..+. |++++ |+++||++|||+ ||+|++|++++|||++.
T Consensus 228 --------~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~- 298 (368)
T PRK08649 228 --------LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRG- 298 (368)
T ss_pred --------CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcc-
Confidence 5789999999999987766664333 23333 699999999999 99999999999988871
Q ss_pred cccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHH
Q psy3862 551 KELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTV 630 (671)
Q Consensus 551 ~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l 630 (671)
+||||+|. ++++|||++.+||||||++++|
T Consensus 299 ----------------------------------~~~gm~s~----------------~~~~~eg~~~~~~~~g~~~~~~ 328 (368)
T PRK08649 299 ----------------------------------WHWGMAAP----------------HPSLPRGTRIKVGTTGSLEQIL 328 (368)
T ss_pred ----------------------------------cccCcccC----------------CCcCCCceEEeCCCcCcHHHHh
Confidence 68999995 6789999999999999999999
Q ss_pred H----------HHHHHHhhhccccCcccccccccccEEE
Q psy3862 631 Q----------DILGGLRSACTYVGASKLKELPRRATFI 659 (671)
Q Consensus 631 ~----------~l~gGLrs~m~y~Ga~~l~el~~~a~Fv 659 (671)
+ ||+|||||+|+|+|+++|+|||+ .++|
T Consensus 329 ~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~-~~~~ 366 (368)
T PRK08649 329 FGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQK-VEVV 366 (368)
T ss_pred cCcccccchHHHHHHHHHHHHHhcCCCcHHHHhh-cCeE
Confidence 9 99999999999999999999986 4554
No 24
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=5.6e-50 Score=424.82 Aligned_cols=303 Identities=20% Similarity=0.322 Sum_probs=258.4
Q ss_pred ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862 293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA 372 (671)
Q Consensus 293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~ 372 (671)
.+|+||||+|+|++++..||+||||+++|. ..+++.|++++||||+++.+||+.++++|+++++|| +++|+|.+
T Consensus 3 ~~l~Fddv~lv~~~lp~~s~~dvdlst~~~-----~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~ 76 (326)
T PRK05458 3 KVFDYEDIQLIPNKCIVNSRSECDTSVTLG-----PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIP 76 (326)
T ss_pred CccCccceEEecCCCCCCCHHHcccceEEC-----CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHH
Confidence 579999999999999999999999999996 568999999999999999999999999999999999 79999999
Q ss_pred HHhcC-cccccceeeecccCh---hhHHHHHHcCC--cEEEEccccccccccccccccccccccccccccccccCceeec
Q psy3862 373 FAVQN-PDVIKHVADGGCTSP---GDVAKAMGAGA--DFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDG 446 (671)
Q Consensus 373 ~v~~~-~~~~~~v~~~~~~~~---~~~~~l~~aG~--d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 446 (671)
|+++. |+.+ .+..+.++++ ++..+|++||+ |+|+|| ++|||+....++++.++..||.+ .|++
T Consensus 77 ~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD-~a~gh~~~~~e~I~~ir~~~p~~---------~vi~ 145 (326)
T PRK05458 77 FIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITID-IAHGHSDSVINMIQHIKKHLPET---------FVIA 145 (326)
T ss_pred HHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEE-CCCCchHHHHHHHHHHHhhCCCC---------eEEE
Confidence 99875 4444 5666666665 45677799965 999999 99999999999998888888866 4678
Q ss_pred cccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcc--cHHHHHhhccccccccccCCceEeeec
Q psy3862 447 GCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS--STTAMDKHAGGVAEYRAAEGKTVQVPY 523 (671)
Q Consensus 447 G~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~--q~tAi~~~a~~~~~y~~~~G~~v~i~~ 523 (671)
|+|.|.+.++ ++++|||+++||+ ++| +.|+|+.. .|.|.| |++++.+++....--..++|+ |++
T Consensus 146 g~V~t~e~a~~l~~aGad~i~vg~-~~G-~~~~t~~~--------~g~~~~~w~l~ai~~~~~~~~ipVIAdGG---I~~ 212 (326)
T PRK05458 146 GNVGTPEAVRELENAGADATKVGI-GPG-KVCITKIK--------TGFGTGGWQLAALRWCAKAARKPIIADGG---IRT 212 (326)
T ss_pred EecCCHHHHHHHHHcCcCEEEECC-CCC-cccccccc--------cCCCCCccHHHHHHHHHHHcCCCEEEeCC---CCC
Confidence 8899999988 6799999999996 999 88999864 466788 899999887654333356664 799
Q ss_pred CCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccc
Q psy3862 524 RGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRR 598 (671)
Q Consensus 524 ~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~ 598 (671)
++|++|||+ ||+|++|++++|+||+.+. .+| +.+|.||||.+. +.
T Consensus 213 ~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~-------------------------~~g-~~~k~y~g~~~~--~~-- 262 (326)
T PRK05458 213 HGDIAKSIRFGATMVMIGSLFAGHEESPGKTVE-------------------------IDG-KLYKEYFGSASE--FQ-- 262 (326)
T ss_pred HHHHHHHHHhCCCEEEechhhcCCccCCCceee-------------------------ecc-hhHHHhhCcHhh--hc--
Confidence 999999999 9999999999999999522 124 467899997653 11
Q ss_pred cccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862 599 ATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664 (671)
Q Consensus 599 ~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q 664 (671)
. .+++.+||++..|||||++.++|+++.+||||+|+|+|+++|+|||+ ++|++||++
T Consensus 263 -------~-~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~-~~~v~~~~~ 319 (326)
T PRK05458 263 -------K-GEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK-VDYVIVKNS 319 (326)
T ss_pred -------c-ccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc-CCEEEEecC
Confidence 1 12344599999999999999999999999999999999999999995 999999987
No 25
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=100.00 E-value=1.8e-47 Score=404.12 Aligned_cols=313 Identities=36% Similarity=0.615 Sum_probs=271.5
Q ss_pred CCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHhh
Q psy3862 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA 98 (671)
Q Consensus 19 l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i 98 (671)
|+||||+|+|+++|..++++|||+++|+ ++++++||++++|+++.+.+||+++++.|+++++|+ +++|+|.+|+
T Consensus 2 ~~FddV~lvp~~lp~~s~~dVdlst~~~-----~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfv 75 (321)
T TIGR01306 2 FDYEDIQLIPNKCIVNSRSECDTSVTLG-----KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFI 75 (321)
T ss_pred CCcccEEEecCCCCCCCHHHceeeEEEC-----CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHH
Confidence 7999999999999999999999999995 789999999999999889999999999999999999 7999999998
Q ss_pred hcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHH
Q psy3862 99 VQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELI 178 (671)
Q Consensus 99 ~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li 178 (671)
++.......+.+++|.+++|.+|+..++++...+|++++|.+|||+...+++++++++.+|...+++||+.|.+.++.|+
T Consensus 76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~ 155 (321)
T TIGR01306 76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELE 155 (321)
T ss_pred HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH
Confidence 76532222567788999999999999999843479999999999999999999999988886556665555555555554
Q ss_pred HCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCc
Q psy3862 179 LSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY 258 (671)
Q Consensus 179 ~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~ 258 (671)
++|||+|+||+|||++||||+++|+|+
T Consensus 156 -----------------------------------------------------~aGad~I~V~~G~G~~~~tr~~~g~g~ 182 (321)
T TIGR01306 156 -----------------------------------------------------NAGADATKVGIGPGKVCITKIKTGFGT 182 (321)
T ss_pred -----------------------------------------------------HcCcCEEEECCCCCccccceeeeccCC
Confidence 455555599999999999999999998
Q ss_pred c--hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceE
Q psy3862 259 P--QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPII 336 (671)
Q Consensus 259 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiI 336 (671)
| |++||++|++++ ++|||
T Consensus 183 ~~~~l~ai~ev~~a~------------------------------------------------------------~~pVI 202 (321)
T TIGR01306 183 GGWQLAALRWCAKAA------------------------------------------------------------RKPII 202 (321)
T ss_pred CchHHHHHHHHHHhc------------------------------------------------------------CCeEE
Confidence 7 999999999754 26888
Q ss_pred ecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccc
Q psy3862 337 AANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHD 416 (671)
Q Consensus 337 aa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~ 416 (671)
+
T Consensus 203 a------------------------------------------------------------------------------- 203 (321)
T TIGR01306 203 A------------------------------------------------------------------------------- 203 (321)
T ss_pred E-------------------------------------------------------------------------------
Confidence 7
Q ss_pred ccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcc
Q psy3862 417 QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS 496 (671)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~ 496 (671)
+||+...+|++|+|.+|||+||+|.+.+|+.++|++.+..+|+++|.|+|+.
T Consensus 204 ----------------------------dGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~ 255 (321)
T TIGR01306 204 ----------------------------DGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSA 255 (321)
T ss_pred ----------------------------ECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCch
Confidence 8999999999999999999999999999999999999999999999999954
Q ss_pred cHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 497 STTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 497 q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
+++.+ + ..+ ..+|..+.++|+|++.+.+..++|++++++.++|...++|++ +++|+.++..
T Consensus 256 --~~~~~--~-~~~--~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~~ 316 (321)
T TIGR01306 256 --SEFQK--G-EHK--NVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKNS 316 (321)
T ss_pred --hhhcc--c-ccc--cccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEecC
Confidence 34432 1 111 247888889999999999999999999999999999999999 7889987664
No 26
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=100.00 E-value=7.5e-45 Score=388.40 Aligned_cols=319 Identities=43% Similarity=0.664 Sum_probs=272.6
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHh
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF 97 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~ 97 (671)
+||||||+|+|+++++. +++|||+|+|+ +.+.+++||+++||+++++.+||++++++||+|+||+++++|+|.++
T Consensus 1 ~~~~ddv~l~p~~~~~~-~~~vdl~t~l~----~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~ 75 (325)
T cd00381 1 GLTFDDVLLVPGYSTVL-PSEVDLSTKLT----KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEE 75 (325)
T ss_pred CCCcccEEEeCCCCCCC-HHHceeeEEec----CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHH
Confidence 58999999999999987 58999999998 57999999999999999999999999999999999999999998887
Q ss_pred hhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHH
Q psy3862 98 AVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEEL 177 (671)
Q Consensus 98 i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~L 177 (671)
+++.... ..+..+++..+++.+++..++++ ++++|.+|.+||++..+.+.++++++.+|...+++|++.|.+.++.|
T Consensus 76 i~~vk~~-l~v~~~~~~~~~~~~~~~~l~ea--gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l 152 (325)
T cd00381 76 VRKVKGR-LLVGAAVGTREDDKERAEALVEA--GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL 152 (325)
T ss_pred HHHhccC-ceEEEecCCChhHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH
Confidence 7654311 12334455566677899999998 78999999999999889999999988777555555565555555555
Q ss_pred HHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862 178 ILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG 257 (671)
Q Consensus 178 i~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~ 257 (671)
+++|||+| +||+|||+.|+||.++|+|
T Consensus 153 ~~aGaD~I-----------------------------------------------------~vg~g~G~~~~t~~~~g~g 179 (325)
T cd00381 153 IDAGADGV-----------------------------------------------------KVGIGPGSICTTRIVTGVG 179 (325)
T ss_pred HhcCCCEE-----------------------------------------------------EECCCCCcCcccceeCCCC
Confidence 55555555 8999999999999999999
Q ss_pred cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862 258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA 337 (671)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa 337 (671)
+||++++.+|++++++. ++|||+
T Consensus 180 ~p~~~~i~~v~~~~~~~---------------------------------------------------------~vpVIA 202 (325)
T cd00381 180 VPQATAVADVAAAARDY---------------------------------------------------------GVPVIA 202 (325)
T ss_pred CCHHHHHHHHHHHHhhc---------------------------------------------------------CCcEEe
Confidence 99999999999988642 578887
Q ss_pred cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862 338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ 417 (671)
Q Consensus 338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~ 417 (671)
T Consensus 203 -------------------------------------------------------------------------------- 202 (325)
T cd00381 203 -------------------------------------------------------------------------------- 202 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCccc
Q psy3862 418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS 497 (671)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q 497 (671)
+||+...+++++++.+|||+||+|....++.+|+++.+..+|.++|.++||++
T Consensus 203 ---------------------------~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s 255 (325)
T cd00381 203 ---------------------------DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGS 255 (325)
T ss_pred ---------------------------cCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccc
Confidence 79988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccc-----ccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEE
Q psy3862 498 TTAMDKHAGGV-----AEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 561 (671)
Q Consensus 498 ~tAi~~~a~~~-----~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~ 561 (671)
..|+.+.+..+ .++..++|....++|+|++.+.+..++|++++++.++|+..++|++.++.|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~~~ 324 (325)
T cd00381 256 LGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVR 324 (325)
T ss_pred hhhhhcCccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeEEe
Confidence 99997543221 12335778888899999999999999999999999999999999999988864
No 27
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-41 Score=359.92 Aligned_cols=314 Identities=35% Similarity=0.609 Sum_probs=275.3
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA 96 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~ 96 (671)
.+|+||||+|+|+++|..++++|||+++|+ ++++++|+++++|++..+.+||.++++.|+++++|+ +++|+|.+
T Consensus 3 ~~l~Fddv~lv~~~lp~~s~~dvdlst~~~-----~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~ 76 (326)
T PRK05458 3 KVFDYEDIQLIPNKCIVNSRSECDTSVTLG-----PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIP 76 (326)
T ss_pred CccCccceEEecCCCCCCCHHHcccceEEC-----CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHH
Confidence 589999999999999999999999999995 779999999999999889999999999999999999 89999999
Q ss_pred hhhcC-cccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHH
Q psy3862 97 FAVQN-PDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVE 175 (671)
Q Consensus 97 ~i~~~-p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~ 175 (671)
|+++. |..+ .+.+++|+++++.+++.+++++..++|+|.+|.+|||++...++++++|+.+|+..+++|++.|.+.++
T Consensus 77 ~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~ 155 (326)
T PRK05458 77 FIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVR 155 (326)
T ss_pred HHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHH
Confidence 99654 4323 455678888888999999999843449999999999999999999999999998788888887777777
Q ss_pred HHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862 176 ELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG 255 (671)
Q Consensus 176 ~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g 255 (671)
.|+++|||++ +||+++|++|+||.++|
T Consensus 156 ~l~~aGad~i-----------------------------------------------------~vg~~~G~~~~t~~~~g 182 (326)
T PRK05458 156 ELENAGADAT-----------------------------------------------------KVGIGPGKVCITKIKTG 182 (326)
T ss_pred HHHHcCcCEE-----------------------------------------------------EECCCCCcccccccccC
Confidence 7777777666 89999999999999999
Q ss_pred cCcc--hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862 256 VGYP--QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV 333 (671)
Q Consensus 256 v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i 333 (671)
+++| |++++.+|++++ ++
T Consensus 183 ~~~~~w~l~ai~~~~~~~------------------------------------------------------------~i 202 (326)
T PRK05458 183 FGTGGWQLAALRWCAKAA------------------------------------------------------------RK 202 (326)
T ss_pred CCCCccHHHHHHHHHHHc------------------------------------------------------------CC
Confidence 9999 999999998654 27
Q ss_pred ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862 334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA 413 (671)
Q Consensus 334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~ 413 (671)
|||+
T Consensus 203 pVIA---------------------------------------------------------------------------- 206 (326)
T PRK05458 203 PIIA---------------------------------------------------------------------------- 206 (326)
T ss_pred CEEE----------------------------------------------------------------------------
Confidence 8888
Q ss_pred cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862 414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY 493 (671)
Q Consensus 414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~ 493 (671)
+||+...++++|++.+|||+|++|....|+.++|++++..+|+++|.++
T Consensus 207 -------------------------------dGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~ 255 (326)
T PRK05458 207 -------------------------------DGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYF 255 (326)
T ss_pred -------------------------------eCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhh
Confidence 7999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
|+. +...+ + .++ ..+|..+.++|+|++.|.|..+.+++++++.++|...++|++. ++|+.++..
T Consensus 256 g~~--~~~~~--~--~~~-~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~-~~~v~~~~~ 319 (326)
T PRK05458 256 GSA--SEFQK--G--EYK-NVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK-VDYVIVKNS 319 (326)
T ss_pred CcH--hhhcc--c--ccc-ccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc-CCEEEEecC
Confidence 853 33321 1 112 2478888899999999999999999999999999999999994 889887664
No 28
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=100.00 E-value=5.1e-42 Score=381.44 Aligned_cols=246 Identities=25% Similarity=0.308 Sum_probs=206.1
Q ss_pred cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHH
Q psy3862 294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF 373 (671)
Q Consensus 294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~ 373 (671)
+||||||||+|++|++.| ++|||+++|+ +++.+++|||||||||||+.|||++|++.||+|+||+|+++|+|.++
T Consensus 1 ~~t~ddv~l~p~~~~~~~-~~~~~~~~~~----~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~ 75 (450)
T TIGR01302 1 GLTFDDVLLLPGFIDVEP-DDVDLSTRIT----RNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ 75 (450)
T ss_pred CCCccceEecccccccCc-cccccccccc----cccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH
Confidence 599999999999999999 6999999998 68999999999999999999999999999999999999999999998
Q ss_pred HhcCccc-------------------------------c--------------------------------------c--
Q psy3862 374 AVQNPDV-------------------------------I--------------------------------------K-- 382 (671)
Q Consensus 374 v~~~~~~-------------------------------~--------------------------------------~-- 382 (671)
++++.+. + +
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~ 155 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVI 155 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCE
Confidence 8764210 0 0
Q ss_pred --------------------------------------------------------c--eeeecccCh---hhHHHHHHc
Q psy3862 383 --------------------------------------------------------H--VADGGCTSP---GDVAKAMGA 401 (671)
Q Consensus 383 --------------------------------------------------------~--v~~~~~~~~---~~~~~l~~a 401 (671)
+ +.++.++++ ++...|+++
T Consensus 156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~a 235 (450)
T TIGR01302 156 TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKA 235 (450)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHh
Confidence 0 000111222 445666899
Q ss_pred CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862 402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE 480 (671)
Q Consensus 402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~ 480 (671)
|+|+|+|| ++|||+.+..+.++.++..||.+. |++||+.|.+.++ ++++|||+|+||+ ||| ++|+||
T Consensus 236 G~d~I~vd-~a~g~~~~~~~~i~~i~~~~~~~~---------vi~G~v~t~~~a~~l~~aGad~i~vg~-g~G-~~~~t~ 303 (450)
T TIGR01302 236 GVDVIVID-SSHGHSIYVIDSIKEIKKTYPDLD---------IIAGNVATAEQAKALIDAGADGLRVGI-GPG-SICTTR 303 (450)
T ss_pred CCCEEEEE-CCCCcHhHHHHHHHHHHHhCCCCC---------EEEEeCCCHHHHHHHHHhCCCEEEECC-CCC-cCCccc
Confidence 99999999 999999999999998888888663 5778899999998 6799999999996 999 999998
Q ss_pred EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccc
Q psy3862 481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKE 552 (671)
Q Consensus 481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e 552 (671)
.+ .|+|+||++|+.+|+..+.++ ..++|+ |+++|||+|||+ ||+|++|||++|+||++
T Consensus 304 ~~--------~~~g~p~~~~i~~~~~~~~~~~vpviadGG---i~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~--- 369 (450)
T TIGR01302 304 IV--------AGVGVPQITAVYDVAEYAAQSGIPVIADGG---IRYSGDIVKALAAGADAVMLGSLLAGTTESPGEY--- 369 (450)
T ss_pred ee--------cCCCccHHHHHHHHHHHHhhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEECchhhcCCcCCCce---
Confidence 76 579999999999987655443 245554 799999999999 99999999999999994
Q ss_pred cCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862 553 LPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK 593 (671)
Q Consensus 553 ~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~ 593 (671)
| +.+| +++|.||||+|+.
T Consensus 370 ------~----------------~~~g-~~~k~yrgm~s~~ 387 (450)
T TIGR01302 370 ------E----------------IING-RRYKQYRGMGSLG 387 (450)
T ss_pred ------E----------------EECC-EEEEEEeccchHH
Confidence 2 2346 5789999999984
No 29
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=100.00 E-value=1.6e-41 Score=380.64 Aligned_cols=250 Identities=22% Similarity=0.259 Sum_probs=208.1
Q ss_pred eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH
Q psy3862 290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369 (671)
Q Consensus 290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~ 369 (671)
....+||||||||+|++|++.| +|||++++++ +.+.+++|||+||||||++++||++|++.||||+||+++++|+
T Consensus 17 ~~~~~ltfddv~l~p~~~~~~~-~~~~~~t~lt----~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~ 91 (505)
T PLN02274 17 NQGVSYTYDDVIFHPGYIDFPA-DAVDLSTRLS----RNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNTAEE 91 (505)
T ss_pred cCCCCCCccceEecccccCcCC-cccccccccc----cccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCCCHHH
Confidence 3457899999999999999998 8999999998 6788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcc----------------------------------------------------------------------
Q psy3862 370 WKAFAVQNPD---------------------------------------------------------------------- 379 (671)
Q Consensus 370 ~~~~v~~~~~---------------------------------------------------------------------- 379 (671)
|.++++++++
T Consensus 92 q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~ 171 (505)
T PLN02274 92 QAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTS 171 (505)
T ss_pred HHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhcc
Confidence 9887754310
Q ss_pred ---c-----------------------c------------------------c-------------ceeeecccCh---h
Q psy3862 380 ---V-----------------------I------------------------K-------------HVADGGCTSP---G 393 (671)
Q Consensus 380 ---~-----------------------~------------------------~-------------~v~~~~~~~~---~ 393 (671)
+ + + .++++.++++ +
T Consensus 172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~ 251 (505)
T PLN02274 172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKE 251 (505)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHH
Confidence 0 0 0 0233344443 6
Q ss_pred hHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECcccc
Q psy3862 394 DVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFA 472 (671)
Q Consensus 394 ~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~ 472 (671)
+.++|++||+|+|+|| ++|||+.++++++++++..||.+. ++.|||.|.+-++ ++++|||+|+||+ |+
T Consensus 252 r~~~l~~ag~d~i~iD-~~~g~~~~~~~~i~~ik~~~p~~~---------vi~g~v~t~e~a~~a~~aGaD~i~vg~-g~ 320 (505)
T PLN02274 252 RLEHLVKAGVDVVVLD-SSQGDSIYQLEMIKYIKKTYPELD---------VIGGNVVTMYQAQNLIQAGVDGLRVGM-GS 320 (505)
T ss_pred HHHHHHHcCCCEEEEe-CCCCCcHHHHHHHHHHHHhCCCCc---------EEEecCCCHHHHHHHHHcCcCEEEECC-CC
Confidence 6777899999999999 899999999999998888888663 5677889999988 6799999999996 99
Q ss_pred CCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccc
Q psy3862 473 GHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTY 544 (671)
Q Consensus 473 G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e 544 (671)
| ++|+|+.+ .|.|+||.+++..++..+.++. .++|+ |++++|++|||+ ||+|++|++++|
T Consensus 321 G-~~~~t~~~--------~~~g~~~~~~i~~~~~~~~~~~vpVIadGG---I~~~~di~kAla~GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 321 G-SICTTQEV--------CAVGRGQATAVYKVASIAAQHGVPVIADGG---ISNSGHIVKALTLGASTVMMGSFLAGTTE 388 (505)
T ss_pred C-ccccCccc--------cccCCCcccHHHHHHHHHHhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence 9 99999875 4689999999888776554431 34443 799999999999 999999999999
Q ss_pred cCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862 545 VGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK 593 (671)
Q Consensus 545 ~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~ 593 (671)
+|+++ + +.+| +++|.||||+|+.
T Consensus 389 sp~~~---------~----------------~~~g-~~~k~yrgmgs~~ 411 (505)
T PLN02274 389 APGEY---------F----------------YQDG-VRVKKYRGMGSLE 411 (505)
T ss_pred CCcce---------e----------------eeCC-eEEEEEeccchHH
Confidence 99984 1 2346 6789999999984
No 30
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-38 Score=343.48 Aligned_cols=326 Identities=26% Similarity=0.362 Sum_probs=250.4
Q ss_pred cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee------cC
Q psy3862 15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH------KY 88 (671)
Q Consensus 15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh------~n 88 (671)
...+++||||+|+|+.++..+ ++|||++.+ .++++++||+++||+++++.+||.+++++||+|+|| ++
T Consensus 12 ~~~~~~fddV~lvp~~~~~~~-~dvdls~~~-----~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~ 85 (368)
T PRK08649 12 ARRAYGLDEIAIVPSRRTRDP-EDVSTSWQI-----DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWTRY 85 (368)
T ss_pred ccccCCcceEEEeCCCCCCCH-HHceeeeee-----cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccccC
Confidence 346899999999999766665 999999877 589999999999999999999999999999999999 77
Q ss_pred CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEE-
Q psy3862 89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN- 167 (671)
Q Consensus 89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~- 167 (671)
.++|++..++.+... . +-.++++++ ...| -.+....+.++.+++.. ...++.-+
T Consensus 86 ~~~e~l~~qi~~~~~----~--------~~~~~~~~~-~~~P-----------~~p~l~~~iv~~~~~~~-V~v~vr~~~ 140 (368)
T PRK08649 86 EDPEPILDEIASLGK----D--------EATRLMQEL-YAEP-----------IKPELITERIAEIRDAG-VIVAVSLSP 140 (368)
T ss_pred CCHHHHHHHHHhcCc----H--------HHHHHHHHh-hcCC-----------CCHHHHHHHHHHHHhCe-EEEEEecCC
Confidence 888888887754311 0 001122222 1111 01333455556555421 11111111
Q ss_pred eccHHHHHHHHHCCCcEEEECc-----CCCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEE
Q psy3862 168 VVTGEMVEELILSGADVIKVGI-----GPGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdg-----a~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvk 239 (671)
..+.+.++.|+++|+|+|++++ +|+|+.. ....++++++ .+| ++|||.|.+.+++++++|||+|+
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~-------~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~ 213 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG-------EPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVL 213 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC-------CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 2357999999999999999954 4544310 0111222332 245 67999999999999999999999
Q ss_pred EcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCccccee
Q psy3862 240 VGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITR 319 (671)
Q Consensus 240 VG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~ 319 (671)
||+||||+||||.++|+|+||++||++|+++++++-
T Consensus 214 VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l-------------------------------------------- 249 (368)
T PRK08649 214 VGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL-------------------------------------------- 249 (368)
T ss_pred ECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 999999999999999999999999999999887520
Q ss_pred eeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHH
Q psy3862 320 TFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAM 399 (671)
Q Consensus 320 ~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~ 399 (671)
+... -.++|||+
T Consensus 250 ----~~~~--~~~vpVIA-------------------------------------------------------------- 261 (368)
T PRK08649 250 ----DETG--GRYVHVIA-------------------------------------------------------------- 261 (368)
T ss_pred ----hhhc--CCCCeEEE--------------------------------------------------------------
Confidence 0000 02589998
Q ss_pred HcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCC
Q psy3862 400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG 479 (671)
Q Consensus 400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt 479 (671)
+||+...++++|+|.+|||+||+|....++.+|++
T Consensus 262 ---------------------------------------------dGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg 296 (368)
T PRK08649 262 ---------------------------------------------DGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296 (368)
T ss_pred ---------------------------------------------eCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence 89999999999999999999999999999999999
Q ss_pred cEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH----------HHHhhHhHhccccCccc
Q psy3862 480 ELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ----------DILGGLRSACTYVGASK 549 (671)
Q Consensus 480 ~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia----------vMlG~~~ag~~e~~g~~ 549 (671)
+.. ++||.+. ++..++|..+.++|+|++.+.+. .++|++++++.++|+..
T Consensus 297 ~~~---------~~gm~s~-----------~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~ 356 (368)
T PRK08649 297 RGW---------HWGMAAP-----------HPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSD 356 (368)
T ss_pred ccc---------ccCcccC-----------CCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCc
Confidence 863 6898884 22358899999999999999988 99999999999999999
Q ss_pred ccccCC
Q psy3862 550 LKELPR 555 (671)
Q Consensus 550 i~e~~~ 555 (671)
++|++.
T Consensus 357 ~~~~~~ 362 (368)
T PRK08649 357 LKEFQK 362 (368)
T ss_pred HHHHhh
Confidence 998753
No 31
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=100.00 E-value=1.5e-39 Score=350.70 Aligned_cols=292 Identities=23% Similarity=0.307 Sum_probs=230.2
Q ss_pred ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc----
Q psy3862 287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH---- 362 (671)
Q Consensus 287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih---- 362 (671)
+-..-+.+|+||||+|||+|+|++| +|||++|++. .+.+++||+.||||.||++.|+++++++|++++|.
T Consensus 5 ~~~~~~~~~~~d~i~~vp~~~t~~~-~~v~~~~~i~-----~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl 78 (369)
T TIGR01304 5 RGRTARRTYSLDDISVVPSRRTRSS-KDVDTAWQID-----AYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGL 78 (369)
T ss_pred CCccccccCCcceEEEcCCCCCCCh-hhccceeEEc-----ceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHH
Confidence 3345578999999999999999999 8999999985 78899999999999999999999999999999995
Q ss_pred --cCCCHHHHHHHHhcC----------------------ccc----ccceeeeccc-----Ch---hhH-HHHHHcCCcE
Q psy3862 363 --KYYTLEEWKAFAVQN----------------------PDV----IKHVADGGCT-----SP---GDV-AKAMGAGADF 405 (671)
Q Consensus 363 --r~~~~e~~~~~v~~~----------------------~~~----~~~v~~~~~~-----~~---~~~-~~l~~aG~d~ 405 (671)
+|.+++++..++... |++ ++.++.++++ ++ .++ ..++++|+|+
T Consensus 79 ~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~ 158 (369)
T TIGR01304 79 WGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADL 158 (369)
T ss_pred HhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCE
Confidence 899999999888763 111 1233332222 22 344 3447899999
Q ss_pred EEEcccc--ccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862 406 VMLGGMF--AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 406 i~id~~a--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
|+|+++. ++|.....++.+..+ ..++.--.++ +|++.+.+.++ ++++|||+|++ |.| +.|+++.+
T Consensus 159 I~ihgrt~~q~~~sg~~~p~~l~~-------~i~~~~IPVI-~G~V~t~e~A~~~~~aGaDgV~~---G~g-g~~~~~~~ 226 (369)
T TIGR01304 159 LVIQGTLVSAEHVSTSGEPLNLKE-------FIGELDVPVI-AGGVNDYTTALHLMRTGAAGVIV---GPG-GANTTRLV 226 (369)
T ss_pred EEEeccchhhhccCCCCCHHHHHH-------HHHHCCCCEE-EeCCCCHHHHHHHHHcCCCEEEE---CCC-CCcccccc
Confidence 9999764 455211122211111 0111101244 45678888887 78999999994 455 56888764
Q ss_pred EeCCeEEEEeeCcccHHHHHhhccccccccccCC-ceEe------eecCCCHHHHHH-----HHHhhHhHhccccCcccc
Q psy3862 483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEG-KTVQ------VPYRGDVNDTVQ-----DILGGLRSACTYVGASKL 550 (671)
Q Consensus 483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G-~~v~------i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i 550 (671)
+|+|.|+++++.+++.++++|..+.| ++++ |.+++|++|||+ ||+|++|+.++|+||+
T Consensus 227 --------lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~-- 296 (369)
T TIGR01304 227 --------LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR-- 296 (369)
T ss_pred --------cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCC--
Confidence 57899999999999988888877775 6676 699999999999 9999999999988777
Q ss_pred cccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEeccccc---CHH
Q psy3862 551 KELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRG---DVN 627 (671)
Q Consensus 551 ~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG---~v~ 627 (671)
| +||||... |+++|+|....+...| +|+
T Consensus 297 ----------------------------~-----~~w~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 327 (369)
T TIGR01304 297 ----------------------------G-----YFWPAAAA----------------HPRLPRGVVTESGTVGEAPTLE 327 (369)
T ss_pred ----------------------------C-----Cccchhhc----------------CccCCccccccccccCCCCcHH
Confidence 4 89999885 8999999999999999 999
Q ss_pred HHHH----------HHHHHHhhhccccCcccccccccc
Q psy3862 628 DTVQ----------DILGGLRSACTYVGASKLKELPRR 655 (671)
Q Consensus 628 ~~l~----------~l~gGLrs~m~y~Ga~~l~el~~~ 655 (671)
++|+ ||+|+||++|+++||++||||||.
T Consensus 328 ~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~ 365 (369)
T TIGR01304 328 EILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKV 365 (369)
T ss_pred HHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhc
Confidence 9995 999999999999999999999974
No 32
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-39 Score=358.52 Aligned_cols=229 Identities=24% Similarity=0.276 Sum_probs=193.8
Q ss_pred ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862 293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA 372 (671)
Q Consensus 293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~ 372 (671)
.+||||||||+|++|++.| ++|||+++|+ +++.+++|||+|||||||+.+||++||+.||||+||+|+++|+|.+
T Consensus 16 ~~lt~ddv~l~p~~~~~~~-~~v~~~t~l~----~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~ 90 (495)
T PTZ00314 16 TGLTYDDVILLPGYIDFSR-DDVDLSTRLT----RNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE 90 (495)
T ss_pred cCCCccceEeccccccccc-cccccccccc----CCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHH
Confidence 5899999999999999965 9999999998 6789999999999999999999999999999999999999999999
Q ss_pred HHhcCccc-------------------------------c---------------------------------------c
Q psy3862 373 FAVQNPDV-------------------------------I---------------------------------------K 382 (671)
Q Consensus 373 ~v~~~~~~-------------------------------~---------------------------------------~ 382 (671)
+++++++. + +
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~ 170 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREK 170 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCC
Confidence 98775310 0 0
Q ss_pred ------------------------------------------------------------ceeeecccCh---hhHHHHH
Q psy3862 383 ------------------------------------------------------------HVADGGCTSP---GDVAKAM 399 (671)
Q Consensus 383 ------------------------------------------------------------~v~~~~~~~~---~~~~~l~ 399 (671)
.++++.++++ ++...|+
T Consensus 171 lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~ 250 (495)
T PTZ00314 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALI 250 (495)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0122222334 3456668
Q ss_pred HcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCC
Q psy3862 400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSG 478 (671)
Q Consensus 400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ct 478 (671)
++|+|+|+|| ++|||+...+++++.++..||.+ .|++||+.|.+.++ +.++|||+|+||+ ||| |+|+
T Consensus 251 ~ag~d~i~id-~a~G~s~~~~~~i~~ik~~~~~~---------~v~aG~V~t~~~a~~~~~aGad~I~vg~-g~G-s~~~ 318 (495)
T PTZ00314 251 EAGVDVLVVD-SSQGNSIYQIDMIKKLKSNYPHV---------DIIAGNVVTADQAKNLIDAGADGLRIGM-GSG-SICI 318 (495)
T ss_pred HCCCCEEEEe-cCCCCchHHHHHHHHHHhhCCCc---------eEEECCcCCHHHHHHHHHcCCCEEEECC-cCC-cccc
Confidence 9999999999 89999999999988888888766 36788999998888 6799999999995 999 9999
Q ss_pred CcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccc
Q psy3862 479 GELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASK 549 (671)
Q Consensus 479 t~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~ 549 (671)
||.+ +|+|+||++|+.+|+..+.++. .++|+ |++++||+||++ ||+|++|++++|+|++.
T Consensus 319 t~~~--------~~~g~p~~~ai~~~~~~~~~~~v~vIadGG---i~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~ 386 (495)
T PTZ00314 319 TQEV--------CAVGRPQASAVYHVARYARERGVPCIADGG---IKNSGDICKALALGADCVMLGSLLAGTEEAPGEY 386 (495)
T ss_pred cchh--------ccCCCChHHHHHHHHHHHhhcCCeEEecCC---CCCHHHHHHHHHcCCCEEEECchhccccccCCce
Confidence 9875 5799999999999877665542 45554 699999999999 99999999999988883
No 33
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-38 Score=353.33 Aligned_cols=249 Identities=24% Similarity=0.339 Sum_probs=203.4
Q ss_pred ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862 291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 370 (671)
Q Consensus 291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~ 370 (671)
...+||||||||+|++|++.| ++||++++|+ +.+.+++|||+|||||||+.|||++|++.||+|+||+++++|++
T Consensus 5 ~~~~~t~ddv~l~p~~~~~~~-~~~~~~t~l~----~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~ 79 (486)
T PRK05567 5 AKEALTFDDVLLVPAHSEVLP-NDVDLSTQLT----KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQ 79 (486)
T ss_pred ccCCcCccceEecccccCcCc-ccccccchhh----hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHH
Confidence 455899999999999999999 6999999998 57889999999999999999999999999999999999999999
Q ss_pred HHHHhcCccc---------------------------------------------------------------c--c---
Q psy3862 371 KAFAVQNPDV---------------------------------------------------------------I--K--- 382 (671)
Q Consensus 371 ~~~v~~~~~~---------------------------------------------------------------~--~--- 382 (671)
.+++++++.. . .
T Consensus 80 ~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v 159 (486)
T PRK05567 80 AEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLV 159 (486)
T ss_pred HHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCE
Confidence 8887743110 0 0
Q ss_pred --------------------------------------------------------c--eeeecccCh---hhHHHHHHc
Q psy3862 383 --------------------------------------------------------H--VADGGCTSP---GDVAKAMGA 401 (671)
Q Consensus 383 --------------------------------------------------------~--v~~~~~~~~---~~~~~l~~a 401 (671)
. +.++.++++ +....++++
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a 239 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEA 239 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence 0 011111122 345566899
Q ss_pred CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862 402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE 480 (671)
Q Consensus 402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~ 480 (671)
|+|+|++| ++|||+...++.++.++..+|.+. ++.|++.|.+.++ ++++|||+|+||+ ||| |+|+||
T Consensus 240 gvdvivvD-~a~g~~~~vl~~i~~i~~~~p~~~---------vi~g~v~t~e~a~~l~~aGad~i~vg~-g~g-s~~~~r 307 (486)
T PRK05567 240 GVDVLVVD-TAHGHSEGVLDRVREIKAKYPDVQ---------IIAGNVATAEAARALIEAGADAVKVGI-GPG-SICTTR 307 (486)
T ss_pred CCCEEEEE-CCCCcchhHHHHHHHHHhhCCCCC---------EEEeccCCHHHHHHHHHcCCCEEEECC-CCC-ccccce
Confidence 99999999 889999999998887777776552 4567789999988 6799999999996 999 999999
Q ss_pred EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccc
Q psy3862 481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKE 552 (671)
Q Consensus 481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e 552 (671)
.+ .|+|.||++|+.+|+..+.++ ..++|+ |++++|++|||+ ||+|++|||++|+||+.
T Consensus 308 ~~--------~~~g~p~~~~~~~~~~~~~~~~~~viadGG---i~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~--- 373 (486)
T PRK05567 308 IV--------AGVGVPQITAIADAAEAAKKYGIPVIADGG---IRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV--- 373 (486)
T ss_pred ee--------cCCCcCHHHHHHHHHHHhccCCCeEEEcCC---CCCHHHHHHHHHhCCCEEEECccccccccCCCce---
Confidence 75 579999999999987655443 246664 799999999999 99999999999999984
Q ss_pred cCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862 553 LPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK 593 (671)
Q Consensus 553 ~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~ 593 (671)
| +.+| +++|.||||+|..
T Consensus 374 ------~----------------~~~g-~~~k~y~gm~s~~ 391 (486)
T PRK05567 374 ------E----------------LYQG-RSYKSYRGMGSLG 391 (486)
T ss_pred ------E----------------EECC-EEEEEEeccchHH
Confidence 2 1235 5789999999984
No 34
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.94 E-value=1.5e-25 Score=242.31 Aligned_cols=328 Identities=24% Similarity=0.315 Sum_probs=227.6
Q ss_pred ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee------cCC
Q psy3862 16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH------KYY 89 (671)
Q Consensus 16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh------~n~ 89 (671)
...|+||||.|||++.++.| ++||+++++ ..+.+++||+.+||+++++..++.++++.|++|+|+ ++.
T Consensus 10 ~~~~~~d~i~~vp~~~t~~~-~~v~~~~~i-----~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl~~~~~ 83 (369)
T TIGR01304 10 RRTYSLDDISVVPSRRTRSS-KDVDTAWQI-----DAYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGLWGRHE 83 (369)
T ss_pred cccCCcceEEEcCCCCCCCh-hhccceeEE-----cceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHHHhcCC
Confidence 46899999999999999987 799999988 589999999999999999999999999999999975 344
Q ss_pred CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-Ee
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-NV 168 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~v 168 (671)
.++.+..++... ...++ ..+...++... ..+. + .++-..++++.+++.. ...++-- ..
T Consensus 84 ~~~~~~~QI~g~-----------~~~~~-~a~aa~~~~e~-~~~~--~-----~p~l~~~ii~~vr~a~-VtvkiRl~~~ 142 (369)
T TIGR01304 84 DPDPAIAKIAEA-----------YEEGD-QAAATRLLQEL-HAAP--L-----KPELLGERIAEVRDSG-VITAVRVSPQ 142 (369)
T ss_pred CHHHHHHHHhhc-----------CCChH-HHHHHHHHHHc-CCCc--c-----ChHHHHHHHHHHHhcc-eEEEEecCCc
Confidence 444433333210 01111 11222233321 1111 1 2344455666665531 1111111 12
Q ss_pred ccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862 169 VTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKVGI 242 (671)
Q Consensus 169 ~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkVG~ 242 (671)
...+.++.++++|+|+|++++ ++.|. +..-...++.++++ .+| ++|+|.|.+.++.++++|||+|. +
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~-----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~--~ 215 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHV-----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVI--V 215 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhcc-----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE--E
Confidence 356899999999999999964 22220 00011234444554 356 57999999999999999999998 8
Q ss_pred cCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeee
Q psy3862 243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFT 322 (671)
Q Consensus 243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~ 322 (671)
|.|+.|||+.+.|+|.||++++.+|+.+++++-
T Consensus 216 G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~----------------------------------------------- 248 (369)
T TIGR01304 216 GPGGANTTRLVLGIEVPMATAIADVAAARRDYL----------------------------------------------- 248 (369)
T ss_pred CCCCCcccccccCCCCCHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 899999999999999999999999998886420
Q ss_pred eccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcC
Q psy3862 323 FRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAG 402 (671)
Q Consensus 323 ~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG 402 (671)
++++. ..+|||+
T Consensus 249 -~e~g~--r~vpVIA----------------------------------------------------------------- 260 (369)
T TIGR01304 249 -DETGG--RYVHVIA----------------------------------------------------------------- 260 (369)
T ss_pred -HhcCC--CCceEEE-----------------------------------------------------------------
Confidence 00000 1389988
Q ss_pred CcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862 403 ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 403 ~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
+||+...+++++++.+|||+|++|.-...+.+|+++
T Consensus 261 ------------------------------------------dGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~-- 296 (369)
T TIGR01304 261 ------------------------------------------DGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR-- 296 (369)
T ss_pred ------------------------------------------eCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCC--
Confidence 799999999999999999999999877777778775
Q ss_pred EeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCC---CHHHHHH----------HHHhhHhHhccccCccc
Q psy3862 483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRG---DVNDTVQ----------DILGGLRSACTYVGASK 549 (671)
Q Consensus 483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~G---di~kAia----------vMlG~~~ag~~e~~g~~ 549 (671)
|+-.|+.++ ..+ -+.|..+++...| .+...|- .++|+++..+..+|...
T Consensus 297 ---------~~~w~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~ 358 (369)
T TIGR01304 297 ---------GYFWPAAAA-------HPR--LPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTD 358 (369)
T ss_pred ---------CCccchhhc-------Ccc--CCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchh
Confidence 344444322 111 1445444555556 6666665 68999999998888888
Q ss_pred ccccC
Q psy3862 550 LKELP 554 (671)
Q Consensus 550 i~e~~ 554 (671)
+||++
T Consensus 359 ~~~~~ 363 (369)
T TIGR01304 359 LKEFQ 363 (369)
T ss_pred hhhhh
Confidence 88754
No 35
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.81 E-value=2.8e-21 Score=189.10 Aligned_cols=79 Identities=28% Similarity=0.320 Sum_probs=71.8
Q ss_pred ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862 291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW 370 (671)
Q Consensus 291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~ 370 (671)
...+|+||||||+|.+|++.| ++|||+|+++ +++.+|+|++||+|||||+.+||++|++.||+||||+|+++|++
T Consensus 11 ~~~~ltfddVll~p~~s~v~p-~~~~vkt~i~----~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~ 85 (170)
T COG0516 11 ARPGLTFDDVLLLPAASDVAP-AGVDVKTGLG----PGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEES 85 (170)
T ss_pred hCCCceeccCcchhhHHhhcc-CCCeeEeccc----CCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhC
Confidence 345599999999999999999 5599999998 56999999999999999999999999999999999999999766
Q ss_pred HHHH
Q psy3862 371 KAFA 374 (671)
Q Consensus 371 ~~~v 374 (671)
..++
T Consensus 86 ~~~v 89 (170)
T COG0516 86 PGEY 89 (170)
T ss_pred CCce
Confidence 6544
No 36
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.62 E-value=7.5e-15 Score=157.78 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=146.5
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcC---CeEEeec
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIHK 87 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~g---glgvIh~ 87 (671)
....|||+.|+|+.++..+.++|||+++| -+.++++||++++|++++ ..+||.+.++.| ++|....
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~-----~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~ 92 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEF-----LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRA 92 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEE-----CCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchh
Confidence 57889999999999998889999999998 377899999999999876 478999888888 6776643
Q ss_pred C-CCHHHHHHhh--hc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHH
Q psy3862 88 Y-YTLEEWKAFA--VQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVD 149 (671)
Q Consensus 88 n-~~~Eeq~~~i--~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~ 149 (671)
+ .++|.+..+. ++ .|+ .|+.++.+. +.++..+..+++++ +...+.++..++ . ...+++
T Consensus 93 ~~~~~e~~~~~~~vr~~~~~--~p~~~Nl~~~~~~~~~~~~~~~~i~~~~a--dalel~l~~~q~~~~~~~~~df~~~~~ 168 (326)
T cd02811 93 ALEDPELAESFTVVREAPPN--GPLIANLGAVQLNGYGVEEARRAVEMIEA--DALAIHLNPLQEAVQPEGDRDFRGWLE 168 (326)
T ss_pred hccChhhhhHHHHHHHhCCC--ceEEeecCccccCCCCHHHHHHHHHhcCC--CcEEEeCcchHhhcCCCCCcCHHHHHH
Confidence 3 4455442222 21 221 344444332 33333444444443 444455544222 1 234668
Q ss_pred HHHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce--EEEEecc--------------cCCcchhhhh
Q psy3862 150 FVRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV--CTTRLKN--------------KTSDFFLIQF 211 (671)
Q Consensus 150 ~ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~--------------~~~~~~~i~~ 211 (671)
.++.+++. .|...+..|...+.+.++.|.++|||+|++++.+|++ .+...+. ..+....+..
T Consensus 169 ~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~ 248 (326)
T cd02811 169 RIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLE 248 (326)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHH
Confidence 88888764 5877788787788999999999999999998877753 1110000 0122222222
Q ss_pred c----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 212 Y----SCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 212 i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+ ..+| +.|||-++..+..++.+|||+|.+|
T Consensus 249 ~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 249 VRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA 284 (326)
T ss_pred HHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence 1 1355 7999999999999999999999777
No 37
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.61 E-value=8.6e-15 Score=156.06 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=135.4
Q ss_pred CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCc-ccccceEEecCC-ChhhHHHHHHHHH
Q psy3862 51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNP-DVIKHVAVSSGI-SAKDLAGLKEILA 127 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p-~~~~~~~v~~G~-~~~d~~rl~~l~~ 127 (671)
+-+.+++||+.++|.++++.+|+.|++++||||+|+. ++++|+..+.+++.. .+.+|++++.-. ++...+.++.+++
T Consensus 6 ~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~ 85 (307)
T TIGR03151 6 DLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIE 85 (307)
T ss_pred HHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHh
Confidence 5678899999999999999999999999999999995 577887766665332 234678775433 3333345566777
Q ss_pred hCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCc
Q psy3862 128 ALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSD 205 (671)
Q Consensus 128 a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~ 205 (671)
+ +++++.+ +.|.+..+++.+|+ . +.++...+.+.+.++.+.++|+|.|++++ ++||.- ..++
T Consensus 86 ~--~v~~v~~--~~g~p~~~i~~lk~---~---g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g------~~~~ 149 (307)
T TIGR03151 86 E--KVPVVTT--GAGNPGKYIPRLKE---N---GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIG------ELTT 149 (307)
T ss_pred C--CCCEEEE--cCCCcHHHHHHHHH---c---CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCC------CCcH
Confidence 7 5566665 45666555454443 2 34555688899999999999999999988 677631 1234
Q ss_pred chhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc
Q psy3862 206 FFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP 259 (671)
Q Consensus 206 ~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~ 259 (671)
+.+++.+. .+| ++|||.|++.+++++.+|||||.+| ||.++..-.+
T Consensus 150 ~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG--------t~f~~t~Es~ 200 (307)
T TIGR03151 150 MALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG--------TRFLCAKECN 200 (307)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc--------hHHhcccccC
Confidence 55555553 357 7999999999999999999999999 7666655443
No 38
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.60 E-value=7.6e-15 Score=157.98 Aligned_cols=201 Identities=19% Similarity=0.156 Sum_probs=124.9
Q ss_pred CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCc-ccccceEEecCCChhhHHH-------
Q psy3862 51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNP-DVIKHVAVSSGISAKDLAG------- 121 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~r------- 121 (671)
+.+.+++||+.++|.+++..+||.|++++||||+|.. ++++|+..+.+.+.. .+.+|++++.-+...+...
T Consensus 6 ~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~ 85 (330)
T PF03060_consen 6 ELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPK 85 (330)
T ss_dssp HHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHH
T ss_pred HHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhh
Confidence 5677899999999999999999999999999999995 467776555554322 2345777654332111110
Q ss_pred -----HHH-HHHhCC------------CceEEEeeccCCCC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCC
Q psy3862 122 -----LKE-ILAALP------------EIEYICLDVANGYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGA 182 (671)
Q Consensus 122 -----l~~-l~~a~~------------~~d~Ivld~a~G~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGa 182 (671)
+.+ .++... ..++++ ...|.+ ..+++.+++ .+.++...+.+.+.|+.++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~a~~~G~ 157 (330)
T PF03060_consen 86 ELGNAVLELCIEEGVPFEEQLDVALEAKPDVVS--FGFGLPPPEVIERLHA------AGIKVIPQVTSVREARKAAKAGA 157 (330)
T ss_dssp HTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEE--EESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHhCcccccccccccccceEEEE--eecccchHHHHHHHHH------cCCccccccCCHHHHHHhhhcCC
Confidence 111 122100 122343 345666 666666664 34667778899999999999999
Q ss_pred cEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862 183 DVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG 255 (671)
Q Consensus 183 D~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g 255 (671)
|+|+++| ++||.- ..+. +.+.+++.+. .+| +||||+|++++++++.+|||||++| ||.++.
T Consensus 158 D~iv~qG~eAGGH~g-~~~~---~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~G--------TrFl~t 225 (330)
T PF03060_consen 158 DAIVAQGPEAGGHRG-FEVG---STFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG--------TRFLAT 225 (330)
T ss_dssp SEEEEE-TTSSEE----SSG----HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEES--------HHHHTS
T ss_pred CEEEEeccccCCCCC-cccc---ceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecC--------CeEEec
Confidence 9999999 788853 1111 2455555553 356 7999999999999999999999999 999988
Q ss_pred cCcchhhhHHHHHHHh
Q psy3862 256 VGYPQFSAVLECADAA 271 (671)
Q Consensus 256 v~~~~~~~~~~~~~~~ 271 (671)
.-.+--.+..+.--.+
T Consensus 226 ~Es~~~~~~K~~l~~a 241 (330)
T PF03060_consen 226 EESGASDAYKQALVDA 241 (330)
T ss_dssp TTS-S-HHHHHHHHHG
T ss_pred ccccChHHHHHHHHhC
Confidence 7766555555444333
No 39
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.60 E-value=1.1e-14 Score=157.90 Aligned_cols=216 Identities=17% Similarity=0.175 Sum_probs=148.2
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcC---CeEEeec
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHG---LFTTIHK 87 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~g---glgvIh~ 87 (671)
...+||||.|+|+++|.++.++|||+++|- +.++++|+++++|+++++ .+||.+.++.| ++|.+..
T Consensus 26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~-----g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~ 100 (352)
T PRK05437 26 KTTGFDDVRLIHNALPELDLDDIDLSTEFL-----GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA 100 (352)
T ss_pred CCCChheEEEecccCCCCChhhccceeeEC-----CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence 468899999999999998899999999983 668999999999999865 67999888898 7787764
Q ss_pred CC-CHHHH--HHhhhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHH
Q psy3862 88 YY-TLEEW--KAFAVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVD 149 (671)
Q Consensus 88 n~-~~Eeq--~~~i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~ 149 (671)
.+ +++-. .+.+++ .|+ .|+.++.+. ++++..+..+++++ +...+.++..++ + ...+.+
T Consensus 101 ~~~~~~~~~~~~~vr~~~p~--~p~~aNl~~~~~~~~~~~~~~~~~~~~~a--dal~l~l~~~qe~~~p~g~~~f~~~le 176 (352)
T PRK05437 101 ALKDPELADSFSVVRKVAPD--GLLFANLGAVQLYGYGVEEAQRAVEMIEA--DALQIHLNPLQELVQPEGDRDFRGWLD 176 (352)
T ss_pred hccChhhHHHHHHHHHHCCC--ceEEeecCccccCCCCHHHHHHHHHhcCC--CcEEEeCccchhhcCCCCcccHHHHHH
Confidence 42 34411 122222 232 345444442 23334444444443 444455544332 1 234567
Q ss_pred HHHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--EE--Eec--------c--cCCcchhhhhcc
Q psy3862 150 FVRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--TT--RLK--------N--KTSDFFLIQFYS 213 (671)
Q Consensus 150 ~ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~t--~v~--------~--~~~~~~~i~~i~ 213 (671)
.++.+++. .|...|..|...+.+.++.|.++|||+|++.+.+|++- +. +-. . ..|+...+..+.
T Consensus 177 ~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~ 256 (352)
T PRK05437 177 NIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEAR 256 (352)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHH
Confidence 88888764 58888888877889999999999999999988777541 11 100 0 113223332231
Q ss_pred ----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 ----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 ----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| +.|||-++..+..++.+|||+|.+|
T Consensus 257 ~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 257 SLLPDLPIIASGGIRNGLDIAKALALGADAVGMA 290 (352)
T ss_pred HhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEh
Confidence 245 7999999999999999999999777
No 40
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.58 E-value=1e-14 Score=157.09 Aligned_cols=215 Identities=18% Similarity=0.182 Sum_probs=147.0
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcC---CeEEeecC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIHKY 88 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~g---glgvIh~n 88 (671)
...||||.|+|+++|..+.++|||+++| -+.+|+.||++++|++++ ..+||.+.++.| ++|....+
T Consensus 20 ~~~~~~~~~~~~~lp~~~~~~~d~s~~~-----~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~ 94 (333)
T TIGR02151 20 STGFDDITLIHNALPEINLDDIDLTTEF-----LGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAA 94 (333)
T ss_pred CCCcceEEEecCCCCCCCcccCCCceEE-----CCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhh
Confidence 4779999999999999999999999999 478899999999999887 567999888888 77765533
Q ss_pred -CCHHHHHHh--hhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHHH
Q psy3862 89 -YTLEEWKAF--AVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVDF 150 (671)
Q Consensus 89 -~~~Eeq~~~--i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~~ 150 (671)
.++|.+..+ +++ .| ..|+..+.+. ..++..++.+++++ +...+.++..+. + ...+++.
T Consensus 95 ~~~~~~~~~~~~vr~~~~--~~p~i~nl~~~~~~~~~~~~~~~~i~~i~a--dal~i~ln~~q~~~~p~g~~~f~~~le~ 170 (333)
T TIGR02151 95 LKDPETADTFEVVREEAP--NGPLIANIGAPQLVEGGPEEAQEAIDMIEA--DALAIHLNVLQELVQPEGDRNFKGWLEK 170 (333)
T ss_pred ccChhhHhHHHHHHHhCC--CCcEEeecCchhhccccHHHHHHHHHHhcC--CCEEEcCcccccccCCCCCcCHHHHHHH
Confidence 334433333 232 23 2344433332 12234445555554 555556554332 2 2456688
Q ss_pred HHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--E--EEecc----------cCCcchhhhhcc-
Q psy3862 151 VRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--T--TRLKN----------KTSDFFLIQFYS- 213 (671)
Q Consensus 151 ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~--t~v~~----------~~~~~~~i~~i~- 213 (671)
++.+++. .|...|..|...+.+.++.|.++|+|+|++.+++|++- + .+..+ ..+....+..+.
T Consensus 171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~ 250 (333)
T TIGR02151 171 IAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS 250 (333)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh
Confidence 8888764 58777877877789999999999999999999888751 1 11111 001111111111
Q ss_pred ---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 ---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 ---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| +.|||-|+..+..++.+|||+|-+|
T Consensus 251 ~~~~ipVIasGGI~~~~di~kaLalGAd~V~ig 283 (333)
T TIGR02151 251 DAPDAPIIASGGLRTGLDVAKAIALGADAVGMA 283 (333)
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhh
Confidence 245 7999999999999999999999555
No 41
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.55 E-value=8.7e-14 Score=148.06 Aligned_cols=190 Identities=17% Similarity=0.088 Sum_probs=132.4
Q ss_pred CceEEecCCCcccc-HHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc--cccceEEecC-CChh--hHHHHHHHHHh
Q psy3862 56 GVPIIAANMDTVGT-FEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD--VIKHVAVSSG-ISAK--DLAGLKEILAA 128 (671)
Q Consensus 56 ~~Piv~a~M~~vt~-~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~--~~~~~~v~~G-~~~~--d~~rl~~l~~a 128 (671)
++||+.++|.++++ .+||.|++++||||+|.. .+++|+..+.+++... +.+|++++.- ..+. ..+.++-+++.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~ 81 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAI 81 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhc
Confidence 58999999999987 899999999999999985 4778776666654433 4678887642 1111 12455556666
Q ss_pred CCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCce--EEEEecccCC
Q psy3862 129 LPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSV--CTTRLKNKTS 204 (671)
Q Consensus 129 ~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~--~~t~v~~~~~ 204 (671)
.++++++ +.|.+.. .+.++ + .+.++...+.+.+.++.++++|||+|+++| ++||. .++.+ ..|
T Consensus 82 --~v~~V~~--~~G~P~~-~~~lk---~---~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~--L~~ 148 (320)
T cd04743 82 --KPTFALI--AGGRPDQ-ARALE---A---IGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFV--LWE 148 (320)
T ss_pred --CCcEEEE--cCCChHH-HHHHH---H---CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchh--hHH
Confidence 3455554 3555543 33333 3 356677788899999999999999999999 88885 11211 001
Q ss_pred cchhhhhcc---------ccC--CccccccHHHHHHHHHcCC--------CEEEEcccCCCccccceecccCcchhhhHH
Q psy3862 205 DFFLIQFYS---------CIP--QAGNVVTGEMVEELILSGA--------DVIKVGIGPGSVCTTRLKTGVGYPQFSAVL 265 (671)
Q Consensus 205 ~~~~i~~i~---------~~p--~aGnV~t~~~a~~li~aGA--------dgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~ 265 (671)
. +++.+. .+| +||||+|++++.+++.+|| +||++| ||.++.--.|.-.++.
T Consensus 149 ~--v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mG--------TrFl~t~Es~~~~~~~ 218 (320)
T cd04743 149 S--AIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMG--------TAYLFTEEAVSAGAIL 218 (320)
T ss_pred H--HHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEc--------cHHhcchhhcCccccc
Confidence 0 111121 366 7999999999999999998 899999 9988877666444444
Q ss_pred HHH
Q psy3862 266 ECA 268 (671)
Q Consensus 266 ~~~ 268 (671)
+..
T Consensus 219 ~~~ 221 (320)
T cd04743 219 PTF 221 (320)
T ss_pred HHH
Confidence 443
No 42
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.47 E-value=3.7e-13 Score=145.01 Aligned_cols=192 Identities=22% Similarity=0.228 Sum_probs=131.0
Q ss_pred CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC-CCHHHHHHhhhc------CcccccceE-----EecC-CCh-
Q psy3862 51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY-YTLEEWKAFAVQ------NPDVIKHVA-----VSSG-ISA- 116 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n-~~~Eeq~~~i~~------~p~~~~~~~-----v~~G-~~~- 116 (671)
..+.+.+||+.++|.+++..+||.|.+++||+|++..+ ++.|...+++++ .|.....+. ++.- +..
T Consensus 9 ~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~ 88 (336)
T COG2070 9 LLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVAR 88 (336)
T ss_pred cccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheeccc
Confidence 67889999999999999999999999999999998876 343333333321 232211122 1111 111
Q ss_pred -hhH-HHHHHHHHhCCCceEEEeeccCC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CC
Q psy3862 117 -KDL-AGLKEILAALPEIEYICLDVANG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GP 191 (671)
Q Consensus 117 -~d~-~rl~~l~~a~~~~d~Ivld~a~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~ 191 (671)
... +.+..+++. .+ ..++....| .+..+++.++. .+.++...+.+.+.++.+.++|+|+|++++ ++
T Consensus 89 ~~~~~~~~~~ii~~-~~--vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAG 159 (336)
T COG2070 89 RNAAEAGVDAIIEG-AG--VPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVREALKAERAGADAVIAQGAEAG 159 (336)
T ss_pred ccchHHhhhhHHhc-CC--CCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCC
Confidence 222 233334442 12 223333455 47777887775 355777788999999999999999999999 78
Q ss_pred CceEEEEecccCCcchhhhhcc---c-cC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchh
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS---C-IP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQF 261 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~---~-~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~ 261 (671)
||... ....+..+.|++.+. . +| +||||+|++++++++.+|||||++| ||.++..-.+--
T Consensus 160 GH~g~--~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G--------T~Fl~t~Ea~a~ 225 (336)
T COG2070 160 GHRGG--VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG--------TRFLATKEADAS 225 (336)
T ss_pred CcCCC--CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh--------hhhhcccccCCC
Confidence 88422 111223455666663 3 67 7999999999999999999999999 999887765543
No 43
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.43 E-value=2.3e-14 Score=140.33 Aligned_cols=78 Identities=28% Similarity=0.318 Sum_probs=71.5
Q ss_pred ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862 16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK 95 (671)
Q Consensus 16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~ 95 (671)
..+||||||+++|+++++.|. ++|++|.|+ ++..+++|+++++||++++.+||++|++.||+||||+||++|||.
T Consensus 12 ~~~ltfddVll~p~~s~v~p~-~~~vkt~i~----~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~~ 86 (170)
T COG0516 12 RPGLTFDDVLLLPAASDVAPA-GVDVKTGLG----PGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEESP 86 (170)
T ss_pred CCCceeccCcchhhHHhhccC-CCeeEeccc----CCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhCC
Confidence 356999999999999999985 599999998 679999999999999999999999999999999999999998765
Q ss_pred Hhh
Q psy3862 96 AFA 98 (671)
Q Consensus 96 ~~i 98 (671)
..+
T Consensus 87 ~~v 89 (170)
T COG0516 87 GEY 89 (170)
T ss_pred Cce
Confidence 444
No 44
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.37 E-value=8.9e-12 Score=132.53 Aligned_cols=204 Identities=21% Similarity=0.159 Sum_probs=135.4
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEee--cCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh--~n~ 89 (671)
...||++.|+|+.++. .+++|++++| -+.+++.|+++++|++.+ +..+|.+.++.|..+.+. .+.
T Consensus 33 ~~~~~~i~~~~~~l~~--~~~id~~~~~-----lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~ 105 (299)
T cd02809 33 RAAFDRIRLRPRVLRD--VSKRDTSTTL-----LGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT 105 (299)
T ss_pred HHHHHhceeecccCCC--CCCCCCceEE-----CCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC
Confidence 4679999999999987 4799999999 477889999999997654 468999999998887766 346
Q ss_pred CHHHHHHhhhcCcccccceEEec--CCChhhHHHHHH-HHHhCCCceEEEe--eccCCCChHHHHHHHHHHHhCCCceEE
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSS--GISAKDLAGLKE-ILAALPEIEYICL--DVANGYTQTFVDFVRRIREMYPKHVII 164 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~--G~~~~d~~rl~~-l~~a~~~~d~Ivl--d~a~G~~~~~~~~ik~lr~~~P~~~li 164 (671)
++|+..+. .| +++.+.. ...+++..++.+ +.+. +.+++.+ +..+.-.....+.++++++..+ ..++
T Consensus 106 ~~~~i~~~---~~---~~~~~ql~~~~~~~~~~~~i~~~~~~--g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvi 176 (299)
T cd02809 106 SLEEVAAA---AP---GPRWFQLYVPRDREITEDLLRRAEAA--GYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLI 176 (299)
T ss_pred CHHHHHHh---cC---CCeEEEEeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEE
Confidence 66654322 22 3443321 123333333322 3333 5566555 3332111123466777776543 2344
Q ss_pred EEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc----c-ccC--CccccccHHHHHHHHHcCCCE
Q psy3862 165 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY----S-CIP--QAGNVVTGEMVEELILSGADV 237 (671)
Q Consensus 165 ~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aGAdg 237 (671)
+..+.+.+.++.++++|||+|++.+.+|+.... ..+++..+..+ . .+| +.|||-|++.+..++++|||+
T Consensus 177 vK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~----g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~ 252 (299)
T cd02809 177 LKGILTPEDALRAVDAGADGIVVSNHGGRQLDG----APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADA 252 (299)
T ss_pred EeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCC----CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 445688999999999999999998866653110 11223233222 1 255 799999999999999999999
Q ss_pred EEEc
Q psy3862 238 IKVG 241 (671)
Q Consensus 238 vkVG 241 (671)
|.||
T Consensus 253 V~ig 256 (299)
T cd02809 253 VLIG 256 (299)
T ss_pred EEEc
Confidence 9998
No 45
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.36 E-value=8.3e-12 Score=137.23 Aligned_cols=201 Identities=18% Similarity=0.070 Sum_probs=124.2
Q ss_pred CCcccCceEEecCCC-ccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc--c-ccceEEecCCChhh----HHH
Q psy3862 51 GKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD--V-IKHVAVSSGISAKD----LAG 121 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~-~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~--~-~~~~~v~~G~~~~d----~~r 121 (671)
+.+.+++||+.++|. ++++.+|+.|++++||||++.. ++++|+..+.+.+... + .+|++++.-..+.+ .+.
T Consensus 8 ~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~ 87 (418)
T cd04742 8 EDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGL 87 (418)
T ss_pred HHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHH
Confidence 567789999999999 6899999999999999999995 5888876666643322 2 46888764333221 122
Q ss_pred HHHHHHhCCCceEEEeeccCCCChHHHHHHHH--HHHhCCCc-----eEEEEEe--------------------------
Q psy3862 122 LKEILAALPEIEYICLDVANGYTQTFVDFVRR--IREMYPKH-----VIIAGNV-------------------------- 168 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~--lr~~~P~~-----~li~g~v-------------------------- 168 (671)
++..++. ++..+... ++..+.+.+...+. ++. -+.+ ..+...+
T Consensus 88 v~l~le~--gV~~ve~s-a~~~~~p~~~~~r~~G~~~-~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 88 VDLFLRH--GVRVVEAS-AFMQLTPALVRYRAKGLRR-DADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHc--CCCEEEec-cccCCCcchhhHHhcCCcc-cccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 3334444 44443321 11111111111111 000 0010 1111111
Q ss_pred ccHHHHHHHHHCC-CcEEEECc-CCCceEEEEecccCCcchhhhhcc--------------ccC--CccccccHHHHHHH
Q psy3862 169 VTGEMVEELILSG-ADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFYS--------------CIP--QAGNVVTGEMVEEL 230 (671)
Q Consensus 169 ~t~e~a~~Li~AG-aD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i~--------------~~p--~aGnV~t~~~a~~l 230 (671)
.|.+.|+.+.+.| +|.|+++. ++||.- ..+.+.+++.+. .+| +||||+|++++.++
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq~EAGGH~g------~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA 237 (418)
T cd04742 164 ITEEQAELARRVPVADDITVEADSGGHTD------NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAA 237 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEcccCCCCCC------CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHH
Confidence 2556666666666 69999998 788841 112222222221 256 79999999999999
Q ss_pred HHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHH
Q psy3862 231 ILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECAD 269 (671)
Q Consensus 231 i~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~ 269 (671)
+.+|||+|++| |+.++..-.+.-.++-+.-.
T Consensus 238 ~alGAd~V~~G--------T~flat~Ea~~s~~~K~~L~ 268 (418)
T cd04742 238 FALGADFIVTG--------SINQCTVEAGTSDAVKDLLQ 268 (418)
T ss_pred HHcCCcEEeec--------cHHHhCccccCCHHHHHHHH
Confidence 99999999999 99999888776666655543
No 46
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.29 E-value=5.6e-11 Score=131.50 Aligned_cols=201 Identities=18% Similarity=0.132 Sum_probs=123.7
Q ss_pred CCcccCceEEecCCC-ccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc-cc-cc-eEEecCCChhh----HHH
Q psy3862 51 GKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD-VI-KH-VAVSSGISAKD----LAG 121 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~-~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~-~~-~~-~~v~~G~~~~d----~~r 121 (671)
+-+.+++||+.++|. ++++.+|+.|++++||||++.. ++++|+..+.+.+... +. +| ++++.=.++.+ .+.
T Consensus 13 ~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~ 92 (444)
T TIGR02814 13 EDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGL 92 (444)
T ss_pred HHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHH
Confidence 567889999999998 6899999999999999999995 5788876666643221 22 25 77754332222 223
Q ss_pred HHHHHHhCCCceEEEeeccCCCChHHHHHHHH--H------------------------HHhC-CCce-----EEEEEec
Q psy3862 122 LKEILAALPEIEYICLDVANGYTQTFVDFVRR--I------------------------REMY-PKHV-----IIAGNVV 169 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~--l------------------------r~~~-P~~~-----li~g~v~ 169 (671)
++.+++. ++..+......+....+. ..+. + ...+ |... ++...+.
T Consensus 93 v~l~l~~--~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~i 169 (444)
T TIGR02814 93 VDLLLRH--GVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRI 169 (444)
T ss_pred HHHHHHc--CCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCC
Confidence 3444444 444332211101111111 1000 0 0000 1000 1111223
Q ss_pred cHHHHHHHHHCC-CcEEEECc-CCCceEEEEecccCCcchhhhhcc--------------ccC--CccccccHHHHHHHH
Q psy3862 170 TGEMVEELILSG-ADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFYS--------------CIP--QAGNVVTGEMVEELI 231 (671)
Q Consensus 170 t~e~a~~Li~AG-aD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i~--------------~~p--~aGnV~t~~~a~~li 231 (671)
|.+.|+.+.+.| +|.|+++. ++||. ..++.+.+++.+. .+| +||||+|++++.+++
T Consensus 170 t~eEA~~a~~~g~aD~Ivve~EAGGHt------g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAl 243 (444)
T TIGR02814 170 TREEAELARRVPVADDICVEADSGGHT------DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAF 243 (444)
T ss_pred CHHHHHHHHhCCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHH
Confidence 666677777777 59999987 88884 1223334444441 245 799999999999999
Q ss_pred HcCCCEEEEcccCCCccccceecccCcchhhhHHHHH
Q psy3862 232 LSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECA 268 (671)
Q Consensus 232 ~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~ 268 (671)
.+|||+|++| |+.++..-.+.-.++-+.-
T Consensus 244 aLGAdgV~~G--------T~flat~Esgas~~~K~~L 272 (444)
T TIGR02814 244 MLGADFIVTG--------SVNQCTVEAGTSDNVKKLL 272 (444)
T ss_pred HcCCcEEEec--------cHHHhCccccCCHHHHHHH
Confidence 9999999999 9999988877666665554
No 47
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.12 E-value=5.4e-10 Score=123.19 Aligned_cols=235 Identities=16% Similarity=0.117 Sum_probs=143.9
Q ss_pred CCCCCceEEecCCcCCCC---CCcceeeeeeecccCCCcccCceEEecCCCcccc-----HHHHHHHHHcCCeEEeec-C
Q psy3862 18 KLDFKDVMLRPKRSTLKS---RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT-----FEMAKHLAKHGLFTTIHK-Y 88 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~---~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~-----~~lA~Ala~~gglgvIh~-n 88 (671)
..+++|+.+.|.+....| ...++.++.++++.++++.++.||+.++|.+++. ..||.++++.|+++.++- +
T Consensus 36 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg 115 (392)
T cd02808 36 FGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGG 115 (392)
T ss_pred CCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCCC
Confidence 468899999886544332 2345558888888889999999999999998753 679999999999999995 4
Q ss_pred CCHHHHHHhhhcCc-ccccceEEe-------------------cCCC---hh-h-HHHHHHHHHhCCCceEEEeeccCC-
Q psy3862 89 YTLEEWKAFAVQNP-DVIKHVAVS-------------------SGIS---AK-D-LAGLKEILAALPEIEYICLDVANG- 142 (671)
Q Consensus 89 ~~~Eeq~~~i~~~p-~~~~~~~v~-------------------~G~~---~~-d-~~rl~~l~~a~~~~d~Ivld~a~G- 142 (671)
+++|+......... ...++|++. +|.. +. . ..++..+....++.+++.....+.
T Consensus 116 ~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~ 195 (392)
T cd02808 116 ELPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDI 195 (392)
T ss_pred CCHHHHhhhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCC
Confidence 77776543332110 111222211 0100 00 0 012222222234444444322221
Q ss_pred -CChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHC-CCcEEEECcCCCce-EEEE-eccc--CCcchhhhhcc
Q psy3862 143 -YTQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILS-GADVIKVGIGPGSV-CTTR-LKNK--TSDFFLIQFYS 213 (671)
Q Consensus 143 -~~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~A-GaD~IvVdga~G~~-~~t~-v~~~--~~~~~~i~~i~ 213 (671)
.++.+.+.++++|+.. |...++++.. +.+.+..++++ |+|+|+|++.+|.. .... .... .|.+..+..+.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~ 274 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAH 274 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHH
Confidence 2356788899988764 5555666554 44555555555 59999999975532 1111 1111 24433333331
Q ss_pred ----------ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchh
Q psy3862 214 ----------CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQF 261 (671)
Q Consensus 214 ----------~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~ 261 (671)
.+| ++|||.|+..+..++++|||+|.+| |....+.|.-|.
T Consensus 275 ~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig--------~~~l~al~c~~~ 326 (392)
T cd02808 275 QALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIG--------TAALIALGCIQA 326 (392)
T ss_pred HHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeec--------hHHHHhcchHHH
Confidence 245 7999999999999999999999999 666666665443
No 48
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.92 E-value=3.1e-08 Score=107.45 Aligned_cols=207 Identities=21% Similarity=0.210 Sum_probs=127.3
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~ 89 (671)
..-||++.|+|..++.. +++||+++| -+.++..||+++||+.. ++..+|.|.++.|-..++. ..+
T Consensus 33 ~~af~~~~l~pr~L~dv--~~~d~~~~~-----lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~ 105 (344)
T cd02922 33 LEAFQRIRFRPRVLRDV--EKVDTSTTI-----LGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC 105 (344)
T ss_pred HHHHHhCceeccccCCC--CCCCCceEE-----CCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC
Confidence 45699999999999876 699999999 47889999999999942 2457888888887665543 457
Q ss_pred CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHH----HhCCCceEEEeeccC-CC---------------------
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEIL----AALPEIEYICLDVAN-GY--------------------- 143 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~----~a~~~~d~Ivld~a~-G~--------------------- 143 (671)
++|+..+.. .|+...=+++... .|.+...+++ .+.-..-++++|... |.
T Consensus 106 s~e~v~~~~--~~~~~~w~Qly~~---~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~ 180 (344)
T cd02922 106 SLEEIVDAR--PPDQPLFFQLYVN---KDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKK 180 (344)
T ss_pred CHHHHHHhc--CCCCcEEEEEeec---CCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccc
Confidence 888744321 1221111222111 1222222222 221122234444330 00
Q ss_pred -----------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc
Q psy3862 144 -----------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF 206 (671)
Q Consensus 144 -----------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~ 206 (671)
+....+.++++++..+ .++++-.+.+.+.++.+.++|||.|++.+.+|...-.. .+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~----~~~~ 255 (344)
T cd02922 181 TKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK-LPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTA----PAPI 255 (344)
T ss_pred cccccchHHHHHhhccCCCCCHHHHHHHHHhcC-CcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCC----CCHH
Confidence 0011244666665442 23455566789999999999999999987666531110 1222
Q ss_pred hhhhhcc--------ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 207 FLIQFYS--------CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 207 ~~i~~i~--------~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..+..+. .+| ..|||-++..+..++.+|||+|.||
T Consensus 256 ~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 256 EVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 2222221 245 7999999999999999999999887
No 49
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.84 E-value=2.1e-08 Score=108.15 Aligned_cols=221 Identities=15% Similarity=0.150 Sum_probs=127.1
Q ss_pred cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcC---CeEEEc
Q psy3862 292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIH 362 (671)
Q Consensus 292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~G---glgvih 362 (671)
.....||||.|+|.--...+.++|||+++|- ...+..||+-++|=-.+ +.++|++-.++| ++|-.-
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~-----G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~ 91 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFL-----GKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQR 91 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEEC-----CceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCch
Confidence 3577899999999887666789999999974 45789999999995444 589999999999 888774
Q ss_pred -cCCCHHHHHH--HHhcCcccccceeeecc-----cChhhHHHHHH-cCCcEEEEccccc--------ccccc--ccccc
Q psy3862 363 -KYYTLEEWKA--FAVQNPDVIKHVADGGC-----TSPGDVAKAMG-AGADFVMLGGMFA--------GHDQS--GGELT 423 (671)
Q Consensus 363 -r~~~~e~~~~--~v~~~~~~~~~v~~~~~-----~~~~~~~~l~~-aG~d~i~id~~a~--------gh~~~--~~~~~ 423 (671)
-..++|.|.+ .+++...-.+.++-.++ .+++++.+.++ +++|.+-|. ... ++... .++.
T Consensus 92 ~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~-l~~~q~~~~~~~~~df~~~~~~- 169 (326)
T cd02811 92 AALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIH-LNPLQEAVQPEGDRDFRGWLER- 169 (326)
T ss_pred hhccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-CcchHhhcCCCCCcCHHHHHHH-
Confidence 4556775522 23332211122221222 24566666643 578888775 211 11100 0111
Q ss_pred cccccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCccCCC---cEEEeC---CeEEEEee
Q psy3862 424 NIEYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG---ELIEKD---GKKVKLFY 493 (671)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt---~~v~~~---g~~~k~g~ 493 (671)
++.+++.+. .++. -|+..+.+.++ +.++|+|+|-|+. ..|++...- |....+ + ..-..+
T Consensus 170 ---------i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG-~GGt~~~~ie~~r~~~~~~~~~-~~~~~~ 238 (326)
T cd02811 170 ---------IEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAG-AGGTSWARVENYRAKDSDQRLA-EYFADW 238 (326)
T ss_pred ---------HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccccccccccccccccc-cccccc
Confidence 222222221 1222 23345677777 5699999999974 223121110 100000 0 112346
Q ss_pred CcccHHHHHhhccccccc-cccCCceEeeecCCCHHHHHHH
Q psy3862 494 GMSSTTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQD 533 (671)
Q Consensus 494 G~~q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAiav 533 (671)
|.|...++.++.....+. ..++|+ |+++.|+.|||+-
T Consensus 239 g~~t~~~l~~~~~~~~~ipIiasGG---Ir~~~dv~kal~l 276 (326)
T cd02811 239 GIPTAASLLEVRSALPDLPLIASGG---IRNGLDIAKALAL 276 (326)
T ss_pred cccHHHHHHHHHHHcCCCcEEEECC---CCCHHHHHHHHHh
Confidence 778777777654433111 134443 7899999999983
No 50
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.79 E-value=2e-08 Score=107.01 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=120.6
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYT 366 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~ 366 (671)
..|||+.|+|.. +..-+++|++++|- ...+..||+-++|...+ +.++|.+-+++|...++. ...+
T Consensus 34 ~~~~~i~~~~~~--l~~~~~id~~~~~l-----g~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~ 106 (299)
T cd02809 34 AAFDRIRLRPRV--LRDVSKRDTSTTLL-----GQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS 106 (299)
T ss_pred HHHHhceeeccc--CCCCCCCCCceEEC-----CeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC
Confidence 359999999943 33358999999984 45678999999996554 568899999999999887 5668
Q ss_pred HHHHHHHHhcCcccccceeeecccChhhH----HHHHHcCCcEEEEcc-ccccccccccccccccccccccccccccccC
Q psy3862 367 LEEWKAFAVQNPDVIKHVADGGCTSPGDV----AKAMGAGADFVMLGG-MFAGHDQSGGELTNIEYMFFPLVGDMNSYLG 441 (671)
Q Consensus 367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~~----~~l~~aG~d~i~id~-~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (671)
+|+..+... .|- .-++. +...++.. +.+.+.|+|.|.+.- ..+.-... ....+.++++.++
T Consensus 107 ~~~i~~~~~-~~~-~~ql~--~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~----------~~~~i~~l~~~~~ 172 (299)
T cd02809 107 LEEVAAAAP-GPR-WFQLY--VPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRL----------TWDDLAWLRSQWK 172 (299)
T ss_pred HHHHHHhcC-CCe-EEEEe--ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC----------CHHHHHHHHHhcC
Confidence 777664421 111 11111 11123333 333567999999851 11110000 1123444555443
Q ss_pred -ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-c-ccccCCc
Q psy3862 442 -GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-E-YRAAEGK 517 (671)
Q Consensus 442 -~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~-y~~~~G~ 517 (671)
.+++-+ +.+.+.++ +.++|||+|.|.. .|. +. ...|.+...++.++..... + -...+|.
T Consensus 173 ~pvivK~-v~s~~~a~~a~~~G~d~I~v~~--~gG-----~~---------~~~g~~~~~~l~~i~~~~~~~ipvia~GG 235 (299)
T cd02809 173 GPLILKG-ILTPEDALRAVDAGADGIVVSN--HGG-----RQ---------LDGAPATIDALPEIVAAVGGRIEVLLDGG 235 (299)
T ss_pred CCEEEee-cCCHHHHHHHHHCCCCEEEEcC--CCC-----CC---------CCCCcCHHHHHHHHHHHhcCCCeEEEeCC
Confidence 355555 46666666 6799999999973 331 11 2356777888877544331 1 1134443
Q ss_pred eEeeecCCCHHHHHH
Q psy3862 518 TVQVPYRGDVNDTVQ 532 (671)
Q Consensus 518 ~v~i~~~Gdi~kAia 532 (671)
|++..|+.|+|+
T Consensus 236 ---I~~~~d~~kal~ 247 (299)
T cd02809 236 ---IRRGTDVLKALA 247 (299)
T ss_pred ---CCCHHHHHHHHH
Confidence 688899999987
No 51
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.74 E-value=2.8e-07 Score=94.19 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=108.8
Q ss_pred CceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCccc-ccceEEecCCCh---hhHHHHHHHHHhCC
Q psy3862 56 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPDV-IKHVAVSSGISA---KDLAGLKEILAALP 130 (671)
Q Consensus 56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~~-~~~~~v~~G~~~---~d~~rl~~l~~a~~ 130 (671)
+.||+.++|.++++.+++.++++.|++|+++. +.+.++..+.+++.... ..++.++.-... ...++++.+.++
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~-- 79 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE-- 79 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC--
Confidence 47999999999999999999999999999984 56676654444322111 123333222221 223456666666
Q ss_pred CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC--CCceEEEEecccCCcchh
Q psy3862 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG--PGSVCTTRLKNKTSDFFL 208 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga--~G~~~~t~v~~~~~~~~~ 208 (671)
+.+.+++... .+..+. +.+++. . ..+...+.+.++++.+.++|+|+|.+++. +|+.-... .+.+..
T Consensus 80 g~d~v~l~~~--~~~~~~---~~~~~~--~-i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~----~~~~~~ 147 (236)
T cd04730 80 GVPVVSFSFG--PPAEVV---ERLKAA--G-IKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFAL 147 (236)
T ss_pred CCCEEEEcCC--CCHHHH---HHHHHc--C-CEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccc----cCHHHH
Confidence 7788877532 333333 333332 1 22334566778899999999999998763 23321100 011222
Q ss_pred hhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 209 IQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 209 i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+..+. .+| ++|||.+.+.+..++++|||||-||
T Consensus 148 i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 148 VPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 22221 356 7999999999999999999999998
No 52
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.72 E-value=1.1e-07 Score=103.65 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=161.1
Q ss_pred ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCC------HHHHHHHHHcC---CeEEEcc
Q psy3862 293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHG---LFTTIHK 363 (671)
Q Consensus 293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~------~~mA~~la~~G---glgvihr 363 (671)
...+||||.|+|.--.....+||||+++|- ...++.||+-++|=-.++ .++|++-.+.| ++|-+.-
T Consensus 26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~-----g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~ 100 (352)
T PRK05437 26 KTTGFDDVRLIHNALPELDLDDIDLSTEFL-----GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA 100 (352)
T ss_pred CCCChheEEEecccCCCCChhhccceeeEC-----CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence 567899999999996655679999999984 346899999999998877 88999999999 9998863
Q ss_pred -CCCHH--HHHHHHhc-Ccccccceeeec-----ccChhhHHHHHH-cCCcEEEEccccc--------ccccc--ccccc
Q psy3862 364 -YYTLE--EWKAFAVQ-NPDVIKHVADGG-----CTSPGDVAKAMG-AGADFVMLGGMFA--------GHDQS--GGELT 423 (671)
Q Consensus 364 -~~~~e--~~~~~v~~-~~~~~~~v~~~~-----~~~~~~~~~l~~-aG~d~i~id~~a~--------gh~~~--~~~~~ 423 (671)
..+++ +....+++ .|+. +.++-.+ +.+++++.+.++ .++|.+-|. .-. ||... .++.
T Consensus 101 ~~~~~~~~~~~~~vr~~~p~~-p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~-l~~~qe~~~p~g~~~f~~~le~- 177 (352)
T PRK05437 101 ALKDPELADSFSVVRKVAPDG-LLFANLGAVQLYGYGVEEAQRAVEMIEADALQIH-LNPLQELVQPEGDRDFRGWLDN- 177 (352)
T ss_pred hccChhhHHHHHHHHHHCCCc-eEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-CccchhhcCCCCcccHHHHHHH-
Confidence 23444 44444444 2342 1111111 223466666543 578888876 211 22110 1122
Q ss_pred cccccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCcc---CCCcEEEeCCeEEEEeeCcc
Q psy3862 424 NIEYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQ---SGGELIEKDGKKVKLFYGMS 496 (671)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~---ctt~~v~~~g~~~k~g~G~~ 496 (671)
++.+++.++ ++++ -|+..+.+.++ +.++|+|+|-|+. ..|++. +..|.....-......+|.|
T Consensus 178 ---------i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~p 247 (352)
T PRK05437 178 ---------IAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIP 247 (352)
T ss_pred ---------HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCC
Confidence 222233221 1222 23345677777 5699999999985 334221 11121000000112357889
Q ss_pred cHHHHHhhccccccc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhh
Q psy3862 497 STTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQD 575 (671)
Q Consensus 497 q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~ 575 (671)
.+.++.++.....+. ..++|+ |++..|+.|+|+. |++ ++.++..
T Consensus 248 t~~~l~~i~~~~~~ipvia~GG---I~~~~dv~k~l~~-------GAd---------------~v~ig~~---------- 292 (352)
T PRK05437 248 TAQSLLEARSLLPDLPIIASGG---IRNGLDIAKALAL-------GAD---------------AVGMAGP---------- 292 (352)
T ss_pred HHHHHHHHHHhcCCCeEEEECC---CCCHHHHHHHHHc-------CCC---------------EEEEhHH----------
Confidence 888887764432111 123342 7889999998884 332 2211000
Q ss_pred hcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccc
Q psy3862 576 ILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR 655 (671)
Q Consensus 576 ~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~ 655 (671)
++.+ ....| .-.+.+++..+...||..|..+|+++++||+..
T Consensus 293 ~l~~-------------------------------~~~~g-------~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~ 334 (352)
T PRK05437 293 FLKA-------------------------------ALEGG-------EEAVIELIEQWIEELKIAMFLTGAKNIAELRKV 334 (352)
T ss_pred HHHH-------------------------------HHhcc-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence 0000 00111 113678889999999999999999999999865
Q ss_pred cE
Q psy3862 656 AT 657 (671)
Q Consensus 656 a~ 657 (671)
-.
T Consensus 335 ~~ 336 (352)
T PRK05437 335 PL 336 (352)
T ss_pred CE
Confidence 43
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.67 E-value=3.2e-08 Score=105.93 Aligned_cols=140 Identities=22% Similarity=0.214 Sum_probs=90.5
Q ss_pred eeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccc-------------------c-------
Q psy3862 329 TYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDV-------------------I------- 381 (671)
Q Consensus 329 ~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~-------------------~------- 381 (671)
+.+..|||.++|..+++++||.+.++.||||+|+ .+.++|++.+++++.++. +
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~ 87 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEK 87 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCC
Confidence 3467899999999999999999999999999999 677888876666543221 0
Q ss_pred -cce--------------eeecc------cChhhHHHHHHcCCcEEEEcccc-ccccc--cccccccccccccccccccc
Q psy3862 382 -KHV--------------ADGGC------TSPGDVAKAMGAGADFVMLGGMF-AGHDQ--SGGELTNIEYMFFPLVGDMN 437 (671)
Q Consensus 382 -~~v--------------~~~~~------~~~~~~~~l~~aG~d~i~id~~a-~gh~~--~~~~~~~~~~~~~~~~~~~~ 437 (671)
+.+ ...+. .+.++..++.++|+|.|+++|.- .||.. ...++++.+...+
T Consensus 88 v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~------- 160 (307)
T TIGR03151 88 VPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV------- 160 (307)
T ss_pred CCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-------
Confidence 001 11111 12344556678999999998754 47743 2233333333211
Q ss_pred cccCceeeccccCchh-HHHHHHcCCcEEEECccccCCccC
Q psy3862 438 SYLGGVVDGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQS 477 (671)
Q Consensus 438 ~~~~~~i~gG~v~t~~-~a~~l~aGAd~V~vG~~g~G~s~c 477 (671)
.++=+..|| +.+++ +++++..|||+|++|...-.+.+|
T Consensus 161 -~iPviaaGG-I~~~~~~~~al~~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 -SIPVIAAGG-IADGRGMAAAFALGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred -CCCEEEECC-CCCHHHHHHHHHcCCCEeecchHHhccccc
Confidence 012134556 55555 677889999999999744443444
No 54
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.61 E-value=6.9e-07 Score=98.06 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=126.3
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~ 89 (671)
-..|+++.|.|..+.-. +++|++++| -+.++..||+++|+... ++..+|.|.++.|-.-++- .++
T Consensus 54 ~~af~~~~l~PRvL~dv--~~~dt~t~l-----lG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~ 126 (383)
T cd03332 54 RDAFSRWRIVPRMLRGV--TERDLSVEL-----FGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS 126 (383)
T ss_pred HHHHHhcCccccccccC--CCCCCceee-----CCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC
Confidence 35699999999998764 699999999 48889999999999863 2467888878887666654 458
Q ss_pred CHHHHHHhhh-----------cCccc----ccc--------eEEecC-----CChhhHHH-H---------HHHHHhCCC
Q psy3862 90 TLEEWKAFAV-----------QNPDV----IKH--------VAVSSG-----ISAKDLAG-L---------KEILAALPE 131 (671)
Q Consensus 90 ~~Eeq~~~i~-----------~~p~~----~~~--------~~v~~G-----~~~~d~~r-l---------~~l~~a~~~ 131 (671)
++||..+... ++.+. ++. +.+.+. ...+|.+. . ...+. .|.
T Consensus 127 slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~-~~~ 205 (383)
T cd03332 127 SIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFS-DPV 205 (383)
T ss_pred CHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhc-cch
Confidence 8988654310 01100 000 001100 01111100 0 00000 000
Q ss_pred ceEEEeecc---C-C------------------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 132 IEYICLDVA---N-G------------------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 132 ~d~Ivld~a---~-G------------------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
....+... + . ...+| +.++++++..+ ..++...+.+.+.++.++++|||.|+|.+
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW-~~i~~lr~~~~-~pvivKgV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 206 -FRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTW-EDLAFLREWTD-LPIVLKGILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred -hhhccccCCCCCcccccccchhHHHHHHhcCCCCCCH-HHHHHHHHhcC-CCEEEecCCCHHHHHHHHHCCCCEEEEcC
Confidence 00000000 0 0 00122 45666666543 45666677899999999999999999998
Q ss_pred CCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 190 GPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 190 a~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+|+..- ...+++..++.+. .+| +.|||-++..+..++.+|||++-+|
T Consensus 283 hGGr~~d----~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 283 HGGRQVD----GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIG 337 (383)
T ss_pred CCCcCCC----CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 7775310 1123344444441 255 7999999999999999999999777
No 55
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.59 E-value=4.7e-07 Score=98.01 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=155.5
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcC---CeEEEc-cC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIH-KY 364 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~G---glgvih-r~ 364 (671)
-.||||.|+|.--...+.++|||+++|- ...++.||+-++|=-.+ +.++|.+-++.| ++|-.. -.
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~-----g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~ 95 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFL-----GKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAAL 95 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEEC-----CccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhc
Confidence 5699999999998888889999999985 45689999999996555 778899999999 888765 24
Q ss_pred CCHHHHHHH--Hhc-Ccccccceeeeccc-----ChhhHHHHHH-cCCcEEEEcccc--c------ccccc--ccccccc
Q psy3862 365 YTLEEWKAF--AVQ-NPDVIKHVADGGCT-----SPGDVAKAMG-AGADFVMLGGMF--A------GHDQS--GGELTNI 425 (671)
Q Consensus 365 ~~~e~~~~~--v~~-~~~~~~~v~~~~~~-----~~~~~~~l~~-aG~d~i~id~~a--~------gh~~~--~~~~~~~ 425 (671)
.++|.+..+ +++ .|+ .+.++--++. ..+++.+.++ .++|.+-|. .- + ||... .++.++
T Consensus 96 ~~~~~~~~~~~vr~~~~~-~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~-ln~~q~~~~p~g~~~f~~~le~i~- 172 (333)
T TIGR02151 96 KDPETADTFEVVREEAPN-GPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIH-LNVLQELVQPEGDRNFKGWLEKIA- 172 (333)
T ss_pred cChhhHhHHHHHHHhCCC-CcEEeecCchhhccccHHHHHHHHHHhcCCCEEEc-CcccccccCCCCCcCHHHHHHHHH-
Confidence 456654444 343 333 2222222111 1344555433 467777664 21 1 22111 112222
Q ss_pred cccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCc---cCCCcEEEeCCeEEEEeeCcccH
Q psy3862 426 EYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHD---QSGGELIEKDGKKVKLFYGMSST 498 (671)
Q Consensus 426 ~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s---~ctt~~v~~~g~~~k~g~G~~q~ 498 (671)
.+++.+. .+++ .|+-.+.+.++ +.++|+|+|-|+. ..|++ +...|.........-..+|.|.+
T Consensus 173 ---------~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg-~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~ 242 (333)
T TIGR02151 173 ---------EICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG-AGGTSWAQVENYRAKGSNLASFFNDWGIPTA 242 (333)
T ss_pred ---------HHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccchhhhcccccccchhhhcccHhHH
Confidence 2222221 1211 23345777787 4599999999984 33422 11222100000001135677877
Q ss_pred HHHHhhcccccc-ccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccc
Q psy3862 499 TAMDKHAGGVAE-YRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDT 572 (671)
Q Consensus 499 tAi~~~a~~~~~-y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~ 572 (671)
.++.+......+ -..++|+ |++..|+.|+|+ ||+|+.+=..-
T Consensus 243 ~~l~~~~~~~~~ipVIasGG---I~~~~di~kaLalGAd~V~igr~~L~~~----------------------------- 290 (333)
T TIGR02151 243 ASLLEVRSDAPDAPIIASGG---LRTGLDVAKAIALGADAVGMARPFLKAA----------------------------- 290 (333)
T ss_pred HHHHHHHhcCCCCeEEEECC---CCCHHHHHHHHHhCCCeehhhHHHHHHH-----------------------------
Confidence 777664320001 0123343 688999999998 33333321100
Q ss_pred hhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccc
Q psy3862 573 VQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 652 (671)
Q Consensus 573 ~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el 652 (671)
..+| .--+.+.+..+...||..|..+|+++++||
T Consensus 291 ---------------------------------------~~~g-------~~~v~~~i~~~~~eL~~~m~~~G~~~i~el 324 (333)
T TIGR02151 291 ---------------------------------------LDEG-------EEAVIEEIELIIEELKVAMFLTGAKTIAEL 324 (333)
T ss_pred ---------------------------------------HhcC-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 0011 112567788999999999999999999999
Q ss_pred ccccE
Q psy3862 653 PRRAT 657 (671)
Q Consensus 653 ~~~a~ 657 (671)
+..-.
T Consensus 325 ~~~~~ 329 (333)
T TIGR02151 325 KKVPL 329 (333)
T ss_pred ccCCe
Confidence 86543
No 56
>PLN02535 glycolate oxidase
Probab=98.57 E-value=1.8e-06 Score=94.15 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=124.8
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cC
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KY 88 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n 88 (671)
+...|+++.|.|..+.-. +++|++++| -+.++..||+++|+... ++..+|.|.++.|-.-++- .+
T Consensus 40 N~~af~~~~l~Pr~L~dv--~~~d~~t~~-----lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~ 112 (364)
T PLN02535 40 NVQAFRRITFRPRVLVDV--SKIDMSTTI-----LGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMAS 112 (364)
T ss_pred HHHHHHhCCeecccccCC--CCCCCceEE-----CCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCccc
Confidence 345699999999998764 599999999 48889999999998752 3467888877787665543 46
Q ss_pred CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceEEEeecc----------CC------------
Q psy3862 89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEYICLDVA----------NG------------ 142 (671)
Q Consensus 89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~Ivld~a----------~G------------ 142 (671)
+++||..+.. ....=+++-. . .|.+..+++ -.+.-.+-++++|.. ++
T Consensus 113 ~slEeva~~~----~~~~wfQlY~--~-~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~ 185 (364)
T PLN02535 113 CTVEEVASSC----NAVRFLQLYV--Y-KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGL 185 (364)
T ss_pred CCHHHHHhcC----CCCeEEEEec--c-CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhh
Confidence 8888865321 1000011100 0 011111111 111000111111110 00
Q ss_pred ---------------------C-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862 143 ---------------------Y-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK 200 (671)
Q Consensus 143 ---------------------~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~ 200 (671)
. +..| +.++++++. ...++++..+.+.+.++.++++|||.|++.+.+|.. +-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~tW-~~i~~lr~~-~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~----~d 259 (364)
T PLN02535 186 LSTEVVSDKGSGLEAFASETFDASLSW-KDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ----LD 259 (364)
T ss_pred hccCCCccccccHHHHHHhccCCCCCH-HHHHHHHhc-cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC----CC
Confidence 0 0111 345666553 345688888899999999999999999998765532 00
Q ss_pred ccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 201 NKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 201 ~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
...+++..+..+. .+| +.|||-++..+..++.+|||+|.||
T Consensus 260 ~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vG 307 (364)
T PLN02535 260 YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVG 307 (364)
T ss_pred CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0012233333331 255 7999999999999999999999887
No 57
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.52 E-value=1.9e-06 Score=94.47 Aligned_cols=211 Identities=18% Similarity=0.222 Sum_probs=125.5
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEE--eecCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTT--IHKYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgv--Ih~n~ 89 (671)
.-.|+.+.|.|..+.-. +++||+|+| -+.++..||+++|+... ++..+|.|.++.|-.-+ ...+.
T Consensus 39 ~~af~~~~l~PR~L~dv--~~~d~~t~l-----lG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~ 111 (381)
T PRK11197 39 VEDLADIALRQRVLKDM--SDLSLETTL-----FGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC 111 (381)
T ss_pred HHHHHhcceecccccCC--CCCCCceEE-----CCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC
Confidence 45699999999998764 699999999 48889999999998752 35678888777775433 34568
Q ss_pred CHHHHHHhhh----------cCccc----ccc--------eEEec-----CCChhhHH--------HHHHHHHh--CCC-
Q psy3862 90 TLEEWKAFAV----------QNPDV----IKH--------VAVSS-----GISAKDLA--------GLKEILAA--LPE- 131 (671)
Q Consensus 90 ~~Eeq~~~i~----------~~p~~----~~~--------~~v~~-----G~~~~d~~--------rl~~l~~a--~~~- 131 (671)
++||..+... ++.+. ++. +.+.+ |....|.. ....++.. .|.
T Consensus 112 slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w 191 (381)
T PRK11197 112 PIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQW 191 (381)
T ss_pred CHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchh
Confidence 8888654310 11110 000 00111 11111100 01111110 000
Q ss_pred --------ceEEEeeccC------CC-------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcE
Q psy3862 132 --------IEYICLDVAN------GY-------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADV 184 (671)
Q Consensus 132 --------~d~Ivld~a~------G~-------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~ 184 (671)
...-.-+..+ +. +-.| +.++++++..+ +.+++..|.+.+.++.++++|||.
T Consensus 192 ~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW-~di~~lr~~~~-~pvivKgV~s~~dA~~a~~~Gvd~ 269 (381)
T PRK11197 192 AWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISW-KDLEWIRDFWD-GPMVIKGILDPEDARDAVRFGADG 269 (381)
T ss_pred hhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCH-HHHHHHHHhCC-CCEEEEecCCHHHHHHHHhCCCCE
Confidence 0000000000 00 0111 33666666543 457777889999999999999999
Q ss_pred EEECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 185 IKVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 185 IvVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
|+|.+.+|+..... .+++..++.+. .+| +.|||-++..+..++.+|||+|-+|
T Consensus 270 I~Vs~hGGr~~d~~----~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 270 IVVSNHGGRQLDGV----LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG 329 (381)
T ss_pred EEECCCCCCCCCCc----ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEh
Confidence 99988777642111 12333333321 355 7999999999999999999999777
No 58
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.49 E-value=2.3e-06 Score=93.33 Aligned_cols=204 Identities=21% Similarity=0.211 Sum_probs=125.3
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecC
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKY 88 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n 88 (671)
+.-.|+++.|+|..+.-. +++|++|++ -+.++..||+.+|+... ++..+|.|.++.|-.-++ ..+
T Consensus 38 N~~af~r~~l~PRvLrdv--~~~d~~t~~-----lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss 110 (367)
T PLN02493 38 NRNAFARILFRPRILIDV--SKIDMTTTV-----LGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 110 (367)
T ss_pred HHHHHHhCCeecccccCC--CCCCCceEE-----CCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCccc
Confidence 345699999999998764 699999999 48889999999999862 345688887888765544 456
Q ss_pred CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceEEEeeccC-----------------------
Q psy3862 89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEYICLDVAN----------------------- 141 (671)
Q Consensus 89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~Ivld~a~----------------------- 141 (671)
+++|+..+.. ..|. =+++-.- .|.+..+++ -.+.-.+-++++|...
T Consensus 111 ~slEeva~~~-~~~~---wfQlY~~---~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~ 183 (367)
T PLN02493 111 SSVEEVASTG-PGIR---FFQLYVY---KNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNF 183 (367)
T ss_pred CCHHHHHhcC-CCCc---EEEEeec---CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhh
Confidence 8899865431 1010 0111000 000000011 0110000111111100
Q ss_pred --------------C----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862 142 --------------G----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197 (671)
Q Consensus 142 --------------G----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t 197 (671)
+ ....| +.++++|+.. ..++++-.|.+.+.++.++++|||.|+|.+.+|...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW-~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql-- 259 (367)
T PLN02493 184 EGLDLGKMDEANDSGLASYVAGQIDRTLSW-KDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL-- 259 (367)
T ss_pred hhccccCCCcccchhHHHHHhhcCCCCCCH-HHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC--
Confidence 0 01112 3366666543 245667777899999999999999999998777431
Q ss_pred EecccC-Ccchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKT-SDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~-~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.. +++.+++.+. .+| +.|||-++..+.-++.+||+++.||
T Consensus 260 ---d~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 260 ---DYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 308 (367)
T ss_pred ---CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 111 2344444331 245 7999999999999999999999777
No 59
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.48 E-value=1.5e-06 Score=89.61 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=108.8
Q ss_pred eEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHH-----------HHh------------hhcCcccccceEEec-
Q psy3862 58 PIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEW-----------KAF------------AVQNPDVIKHVAVSS- 112 (671)
Q Consensus 58 Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq-----------~~~------------i~~~p~~~~~~~v~~- 112 (671)
||+-+||.++|+.+++.++++..|++++.. |...+.. .+| +.+..+...++.+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 789999999999999999999999999964 3221111 011 111111112455544
Q ss_pred CCChhhHHHHHHHHHhCCCceEEEeecc----------CC-----CChHHHHHHHHHHHh-CCCceEEEEEe--ccHHHH
Q psy3862 113 GISAKDLAGLKEILAALPEIEYICLDVA----------NG-----YTQTFVDFVRRIREM-YPKHVIIAGNV--VTGEMV 174 (671)
Q Consensus 113 G~~~~d~~rl~~l~~a~~~~d~Ivld~a----------~G-----~~~~~~~~ik~lr~~-~P~~~li~g~v--~t~e~a 174 (671)
|.+++++.++.+.++. ..+.+-+|.. .| +++.+.+.++.+++. .|...++-.+. .+.+.+
T Consensus 81 g~~~~~~~~aa~~~~~--~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la 158 (233)
T cd02911 81 SSSLEPLLNAAALVAK--NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELA 158 (233)
T ss_pred CCCHHHHHHHHHHHhh--cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHH
Confidence 4556666665555554 2355544422 01 134456666666653 57666665443 467888
Q ss_pred HHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 175 EELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 175 ~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.|.++|+|.|.++...... ..++..+..+. .+| ..|+|.|.+.++++++.|||+|.||
T Consensus 159 ~~l~~aG~d~ihv~~~~~g~--------~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 159 RLIEKAGADIIHVDAMDPGN--------HADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred HHHHHhCCCEEEECcCCCCC--------CCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 99999999999775422100 11222333332 355 5899999999999999999999999
No 60
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.47 E-value=1.6e-06 Score=94.63 Aligned_cols=214 Identities=22% Similarity=0.239 Sum_probs=122.7
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEee--cC
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KY 88 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh--~n 88 (671)
....||++.|+|+.+.- .+++||+|+| -+.+++.||+++||+... +..+|.+.++.|-.-++. ..
T Consensus 26 N~~af~~i~l~prvL~d--v~~~D~st~~-----lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~ 98 (356)
T PF01070_consen 26 NREAFDRIRLRPRVLRD--VSDPDTSTTF-----LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSS 98 (356)
T ss_dssp HHHGGGGEEE---SSSB--GSS-BSSEEE-----TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCS
T ss_pred HHHHHHHhcccccccCC--cccCCCCeee-----CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCcc
Confidence 34679999999999954 4699999999 489999999999998642 357889888888665554 45
Q ss_pred CCHHHHHHhhhcCcccccceEEecCCChhh-HHHHHHHHHhCCCceE--EEeeccC------------------------
Q psy3862 89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKD-LAGLKEILAALPEIEY--ICLDVAN------------------------ 141 (671)
Q Consensus 89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d-~~rl~~l~~a~~~~d~--Ivld~a~------------------------ 141 (671)
.++|+..+... .|.- +.+..--..+. .+.++..-.+ +.++ +++|...
T Consensus 99 ~~~e~ia~~~~-~~~~---~Qly~~~d~~~~~~~i~rAe~a--G~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~ 172 (356)
T PF01070_consen 99 ASLEEIAAASG-GPLW---FQLYPPRDRELTRDLIRRAEAA--GAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLL 172 (356)
T ss_dssp SCHHHHHHHCT-SEEE---EEEEGBSSHHHHHHHHHHHHHT--TCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGT
T ss_pred CCHHHHHhhcc-CCeE---EEEEEecCHHHHHHHHHHhhcC--CCCEEEEECcCcccCCcccccccccCCCccccccccc
Confidence 77777544311 1100 01100000000 0111111111 1111 1111110
Q ss_pred ----------------------C--------------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEE
Q psy3862 142 ----------------------G--------------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI 185 (671)
Q Consensus 142 ----------------------G--------------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~I 185 (671)
. ....| +.++++++..+ .+++.=.|.+.+.++.|.++|||.|
T Consensus 173 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~i~~~~~~~~-~pvivKgv~~~~da~~~~~~G~~~i 250 (356)
T PF01070_consen 173 DGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTW-DDIEWIRKQWK-LPVIVKGVLSPEDAKRAVDAGVDGI 250 (356)
T ss_dssp TTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SH-HHHHHHHHHCS-SEEEEEEE-SHHHHHHHHHTT-SEE
T ss_pred ccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCH-HHHHHHhcccC-CceEEEecccHHHHHHHHhcCCCEE
Confidence 0 01123 44777766543 3455555689999999999999999
Q ss_pred EECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCc
Q psy3862 186 KVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY 258 (671)
Q Consensus 186 vVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~ 258 (671)
+|.+.+|.+. -.-.+++..+..+. .+| +-|||-++-.+.-++.+||++| |+|+
T Consensus 251 ~vs~hGGr~~----d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v----------------~igr 310 (356)
T PF01070_consen 251 DVSNHGGRQL----DWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAV----------------GIGR 310 (356)
T ss_dssp EEESGTGTSS----TTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEE----------------EESH
T ss_pred EecCCCcccC----ccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeE----------------EEcc
Confidence 9988888641 00012333333332 234 7999999999999999999998 5668
Q ss_pred chhhhHH
Q psy3862 259 PQFSAVL 265 (671)
Q Consensus 259 ~~~~~~~ 265 (671)
|.+.++.
T Consensus 311 ~~l~~l~ 317 (356)
T PF01070_consen 311 PFLYALA 317 (356)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888774
No 61
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.43 E-value=3.4e-06 Score=91.84 Aligned_cols=205 Identities=22% Similarity=0.185 Sum_probs=118.8
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n~ 89 (671)
.--|+.+.|.|..+... +++|++|+| -+.++..|++++||... ++..+|.+.++.|-.-++ ..++
T Consensus 41 ~~a~~~~~l~prvL~dv--~~~d~~t~~-----lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~ 113 (351)
T cd04737 41 TRAFNHKQIVPRVLQGV--ESPDTSTEL-----LGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNT 113 (351)
T ss_pred HHHHHhcCeechhccCC--CCCCCceEe-----CCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCC
Confidence 45699999999998764 589999999 48889999999999863 235688877777655443 3568
Q ss_pred CHHHHHHhhhcCcccccceEEecCCChhhHH----HHHHHHHhCCCceEEEeec--------------------------
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLA----GLKEILAALPEIEYICLDV-------------------------- 139 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~----rl~~l~~a~~~~d~Ivld~-------------------------- 139 (671)
++||..+.. |....-+++-. . .|.+ .++..-.+.-.+-++++|.
T Consensus 114 s~Eei~~~~---~~~~~wfQlY~--~-~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~ 187 (351)
T cd04737 114 SLEEIAKAS---NGGPKWFQLYM--S-KDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHF 187 (351)
T ss_pred CHHHHHHhc---CCCCeEEEEee--c-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhh
Confidence 888865431 10000011000 0 0000 0000000000000111111
Q ss_pred ----cCC--C---------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862 140 ----ANG--Y---------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS 204 (671)
Q Consensus 140 ----a~G--~---------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~ 204 (671)
..+ . ...| +.++++++..+ ..+++-.+.+.+.++.++++|||.|++...+|+..-.. .+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~lr~~~~-~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~----~~ 261 (351)
T cd04737 188 SEGTGKGKGISEIYAAAKQKLSP-ADIEFIAKISG-LPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGG----PA 261 (351)
T ss_pred ccccccCcchhhhhhhccCCCCH-HHHHHHHHHhC-CcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCC----ch
Confidence 000 0 0111 44556655432 23444446789999999999999999986555421000 01
Q ss_pred cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++..++.+. .+| +.|||-++..+..++++|||+|.+|
T Consensus 262 ~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 262 SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 222222231 255 7999999999999999999999888
No 62
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.38 E-value=6.2e-06 Score=89.92 Aligned_cols=213 Identities=17% Similarity=0.247 Sum_probs=125.2
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecC
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKY 88 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n 88 (671)
+.-.|+++.|+|..+.-. +++||+|+| -+.++..||+++|+... ++..+|.|.++.|-.-++ ..+
T Consensus 32 N~~af~~~~l~PRvLr~v--~~~d~~ttl-----lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss 104 (361)
T cd04736 32 NRDAFDRWRFIPRRLVDV--SKRDISASL-----FGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASN 104 (361)
T ss_pred HHHHHHHcCccccccCCC--CCCCCceeE-----CCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCC
Confidence 346799999999998764 689999999 48889999999998762 345688877777755443 356
Q ss_pred CCHHHHHHhhh---------cCccc----ccc--------eEEec-----CCChhhHH---------HHHHHHHh--CC-
Q psy3862 89 YTLEEWKAFAV---------QNPDV----IKH--------VAVSS-----GISAKDLA---------GLKEILAA--LP- 130 (671)
Q Consensus 89 ~~~Eeq~~~i~---------~~p~~----~~~--------~~v~~-----G~~~~d~~---------rl~~l~~a--~~- 130 (671)
+++||..+... .+.+. +++ +.+.+ |...+|.. ....+... .|
T Consensus 105 ~siEeva~a~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~ 184 (361)
T cd04736 105 MSIEDVARQADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPR 184 (361)
T ss_pred CCHHHHHhhcCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCch
Confidence 88998654310 00000 000 00100 11111110 00000000 00
Q ss_pred --------CceEE-Eeecc--------------CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 131 --------EIEYI-CLDVA--------------NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 131 --------~~d~I-vld~a--------------~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
+..-. -.... ++.+.-..+.++++++.+|...++. .+.+.++++.++++|||.|++
T Consensus 185 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~V 263 (361)
T cd04736 185 WLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVIL 263 (361)
T ss_pred hhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEE
Confidence 00000 00000 0001111246788888787544444 578999999999999999999
Q ss_pred CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 188 GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 188 dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
...+|+.... ..+++..+..+. .+| +-|||-++..+..++.+|||+|-||
T Consensus 264 SnhGGrqld~----~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 264 SNHGGRQLDD----AIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLG 318 (361)
T ss_pred CCCCcCCCcC----CccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 8777754210 012233333332 144 7999999999999999999999776
No 63
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.33 E-value=2.1e-06 Score=93.74 Aligned_cols=257 Identities=22% Similarity=0.244 Sum_probs=155.4
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
.|+.+.|+|.. +..-+++|+++++= ...+..||+-|||- .=+|..+|++-++.|-.-++- -++++
T Consensus 41 af~r~~l~PRv--Lrdv~~~d~~t~~l-----G~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~sl 113 (367)
T PLN02493 41 AFARILFRPRI--LIDVSKIDMTTTVL-----GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSV 113 (367)
T ss_pred HHHhCCeeccc--ccCCCCCCCceEEC-----CccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCH
Confidence 48899999986 22336889999983 45678999999864 346778999999999888885 57899
Q ss_pred HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEc--ccccccccccc----------ccccc---------
Q psy3862 368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQSGG----------ELTNI--------- 425 (671)
Q Consensus 368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~~~~----------~~~~~--------- 425 (671)
||..+. ..-+--.+ ++..--..+.+-+++..++|+..|++. ....|+-+.-. .+...
T Consensus 114 Eeva~~-~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 192 (367)
T PLN02493 114 EEVAST-GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMD 192 (367)
T ss_pred HHHHhc-CCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCC
Confidence 998764 21111111 000000011122344467898888773 11122211100 00000
Q ss_pred ----------c------ccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862 426 ----------E------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGK 487 (671)
Q Consensus 426 ----------~------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~ 487 (671)
. ..-.-.+.|+++.++- +|.-|+. +.+-++ ++++|+|+|.|+. .|+ |
T Consensus 193 ~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~-~~~dA~~a~~~Gvd~I~Vsn--hGG-----r------- 257 (367)
T PLN02493 193 EANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSN--HGA-----R------- 257 (367)
T ss_pred cccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC-CHHHHHHHHHcCCCEEEECC--CCC-----C-------
Confidence 0 0011235667777754 7788864 555555 7899999999985 441 1
Q ss_pred EEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEE
Q psy3862 488 KVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFI 560 (671)
Q Consensus 488 ~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv 560 (671)
++..+.+.+.++.++..+.. +. ...+|+ |+++.||.|||+ |++|+++--..
T Consensus 258 --qld~~~~t~~~L~ei~~av~~~~~vi~dGG---Ir~G~Dv~KALALGA~aV~iGr~~l~~l----------------- 315 (367)
T PLN02493 258 --QLDYVPATISALEEVVKATQGRIPVFLDGG---VRRGTDVFKALALGASGIFIGRPVVFSL----------------- 315 (367)
T ss_pred --CCCCchhHHHHHHHHHHHhCCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHHH-----------------
Confidence 12345566777666543321 11 123443 799999999999 44444332110
Q ss_pred EecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhh
Q psy3862 561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSA 640 (671)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~ 640 (671)
...| ..| ++++|..+..-|+..
T Consensus 316 ---------------------------------------------------~~~G------~~g-v~~~l~~l~~el~~~ 337 (367)
T PLN02493 316 ---------------------------------------------------AAEG------EAG-VRKVLQMLRDEFELT 337 (367)
T ss_pred ---------------------------------------------------HhcC------HHH-HHHHHHHHHHHHHHH
Confidence 0111 134 788899999999999
Q ss_pred ccccCcccccccccc
Q psy3862 641 CTYVGASKLKELPRR 655 (671)
Q Consensus 641 m~y~Ga~~l~el~~~ 655 (671)
|..+|.++++||++.
T Consensus 338 m~l~G~~~i~~l~~~ 352 (367)
T PLN02493 338 MALSGCRSLKEISRN 352 (367)
T ss_pred HHHhCCCCHHHhChh
Confidence 999999999999763
No 64
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.32 E-value=1.8e-05 Score=86.59 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=121.5
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n~ 89 (671)
.-.|+++.|+|..+.-. +++|++|+|- +.++..||+.+|+... ++..+|.|.++.|-.-++ ..++
T Consensus 49 ~~af~~~~l~PR~L~dv--~~~d~~t~ll-----G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~ 121 (367)
T TIGR02708 49 IRAFNHKLIVPHLLQDV--ENPSTEIEFL-----GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTA 121 (367)
T ss_pred HHHHHhcCeecccccCC--CCCCCceeeC-----CcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccC
Confidence 35699999999998764 6999999994 7889999999999863 246788888888765444 3568
Q ss_pred CHHHHHHhhhcCcccccceEEecCCChhhH--HHHHHHHHhCCCceEEEeecc---------------------------
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL--AGLKEILAALPEIEYICLDVA--------------------------- 140 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~--~rl~~l~~a~~~~d~Ivld~a--------------------------- 140 (671)
++|+..+.. +....-+++-.. ..+++ +.++..-.+.-.+-++++|..
T Consensus 122 slEev~~~~---~~~~~wfQlY~~-~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~ 197 (367)
T TIGR02708 122 DLPEISEAL---NGTPHWFQFYMS-KDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLP 197 (367)
T ss_pred CHHHHHhhc---CCCceEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcc
Confidence 898865431 110011111000 00000 011111111001111222210
Q ss_pred -------------CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcch
Q psy3862 141 -------------NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFF 207 (671)
Q Consensus 141 -------------~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~ 207 (671)
......| +.++++++..+ ..+++-.+.+.+.++.++++|||.|+|.+.+|.... ....++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~w-~~i~~l~~~~~-~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~----~~~a~~~ 271 (367)
T TIGR02708 198 TGAGKSMDNVYKSAKQKLSP-RDIEEIAGYSG-LPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLD----GGPAAFD 271 (367)
T ss_pred cCCccchhhhccccCCCCCH-HHHHHHHHhcC-CCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCC----CCCcHHH
Confidence 0001122 44666665432 234444577899999999999999999776663210 0011222
Q ss_pred hhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 208 LIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 208 ~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.++.+. .+| +-|||-++.-+..++++|||+|-||
T Consensus 272 ~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence 222221 245 7999999999999999999999554
No 65
>PLN02979 glycolate oxidase
Probab=98.31 E-value=2.2e-05 Score=85.40 Aligned_cols=195 Identities=22% Similarity=0.225 Sum_probs=118.7
Q ss_pred eEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCCCHHHHH
Q psy3862 24 VMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYYTLEEWK 95 (671)
Q Consensus 24 v~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~~~Eeq~ 95 (671)
+.|.|..+.-. +++|+++++ -+.++..|++.+|+... ++..+|.|.++.|-.-++- .+.++|+..
T Consensus 44 ~~lrPRvLrdv--~~~dtst~l-----lG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa 116 (366)
T PLN02979 44 CDFRPRILIDV--SKIDMTTTV-----LGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA 116 (366)
T ss_pred eEEECccccCC--CCCCCceEE-----CCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH
Confidence 67889988654 699999999 48889999999999852 3467888888887665543 458888865
Q ss_pred HhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceE--EEeeccC----------------------------
Q psy3862 96 AFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEY--ICLDVAN---------------------------- 141 (671)
Q Consensus 96 ~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~--Ivld~a~---------------------------- 141 (671)
+.. ..+. =+++-. . .|.+...++ -.+ +.++ +++|...
T Consensus 117 ~a~-~~~~---wfQLY~--~-~Dr~~~~~ll~RA~~a--G~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 117 STG-PGIR---FFQLYV--Y-KNRNVVEQLVRRAERA--GFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred hcc-CCCe---EEEEee--c-CCHHHHHHHHHHHHHc--CCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 331 0010 001000 0 000000000 011 1111 1111100
Q ss_pred ---------C----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc
Q psy3862 142 ---------G----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK 202 (671)
Q Consensus 142 ---------G----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~ 202 (671)
+ -+..| +.++++|+.. ...+++..|.+.+.|+.++++|||.|+|.+.+|... +.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW-~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql-----d~ 260 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSW-KDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL-----DY 260 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCH-HHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC-----CC
Confidence 0 01122 3466666543 245677777899999999999999999998877541 11
Q ss_pred C-Ccchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 203 T-SDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 203 ~-~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
. +++..++.+. .+| +.|||-++..+.-++.+|||++-||
T Consensus 261 ~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 261 VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 307 (366)
T ss_pred chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 1 2233333331 244 7999999999999999999999777
No 66
>PLN02535 glycolate oxidase
Probab=98.30 E-value=1.5e-06 Score=94.96 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=153.6
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
.|+.+.|+|.. +..-+++|++++|= ...+..||.-||+- .-+|..+|++=++.|-.-++- -++++
T Consensus 43 af~~~~l~Pr~--L~dv~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~sl 115 (364)
T PLN02535 43 AFRRITFRPRV--LVDVSKIDMSTTIL-----GYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTV 115 (364)
T ss_pred HHHhCCeeccc--ccCCCCCCCceEEC-----CccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCH
Confidence 48899999986 33335889999974 45678999988753 446788999999999988886 57899
Q ss_pred HHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEc--cc---------ccccccccc-ccc-------
Q psy3862 368 EEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLG--GM---------FAGHDQSGG-ELT------- 423 (671)
Q Consensus 368 e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id--~~---------a~gh~~~~~-~~~------- 423 (671)
||..+.- .-+ .+.---...+ +-+++..++|...||+. .. -+|.+.-.. ++.
T Consensus 116 Eeva~~~-~~~----~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 190 (364)
T PLN02535 116 EEVASSC-NAV----RFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV 190 (364)
T ss_pred HHHHhcC-CCC----eEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence 9987531 111 1110011122 22344457898888874 11 112110000 000
Q ss_pred ---------ccc------ccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862 424 ---------NIE------YMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK 487 (671)
Q Consensus 424 ---------~~~------~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~ 487 (671)
... ....-.++++++.++ ++++.|+....+..++.++|+|+|.|.. .|+ |
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn--~GG-----r------- 256 (364)
T PLN02535 191 VSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGA-----R------- 256 (364)
T ss_pred CccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeC--CCc-----C-------
Confidence 000 001123455666654 3778886444444447899999999874 441 2
Q ss_pred EEEEeeCcccHHHHHhhccccccc--cccCCceEeeecCCCHHHHHHH-----HHhhHhHhccccCcccccccCCcceEE
Q psy3862 488 KVKLFYGMSSTTAMDKHAGGVAEY--RAAEGKTVQVPYRGDVNDTVQD-----ILGGLRSACTYVGASKLKELPRRATFI 560 (671)
Q Consensus 488 ~~k~g~G~~q~tAi~~~a~~~~~y--~~~~G~~v~i~~~Gdi~kAiav-----MlG~~~ag~~e~~g~~i~e~~~~a~fv 560 (671)
+++++.+.+.++.++..+.... ...+|+ |+++.||.|||+- ++|+++-
T Consensus 257 --~~d~~~~t~~~L~ev~~av~~~ipVi~dGG---Ir~g~Dv~KALalGA~aV~vGr~~l-------------------- 311 (364)
T PLN02535 257 --QLDYSPATISVLEEVVQAVGGRVPVLLDGG---VRRGTDVFKALALGAQAVLVGRPVI-------------------- 311 (364)
T ss_pred --CCCCChHHHHHHHHHHHHHhcCCCEEeeCC---CCCHHHHHHHHHcCCCEEEECHHHH--------------------
Confidence 2356777778887765433211 134443 7999999999993 3333321
Q ss_pred EecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhh
Q psy3862 561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSA 640 (671)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~ 640 (671)
|+..+ .|.+ -+++.+..+...|+..
T Consensus 312 --------------------------~~l~~----------------------~g~~-------gv~~~l~~l~~el~~~ 336 (364)
T PLN02535 312 --------------------------YGLAA----------------------KGED-------GVRKVIEMLKDELEIT 336 (364)
T ss_pred --------------------------hhhhh----------------------ccHH-------HHHHHHHHHHHHHHHH
Confidence 11111 1111 1677888899999999
Q ss_pred ccccCcccccccccc
Q psy3862 641 CTYVGASKLKELPRR 655 (671)
Q Consensus 641 m~y~Ga~~l~el~~~ 655 (671)
|..+|..+++||+..
T Consensus 337 m~l~G~~~i~el~~~ 351 (364)
T PLN02535 337 MALSGCPSVKDITRS 351 (364)
T ss_pred HHHhCCCCHHHhhhh
Confidence 999999999999763
No 67
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.28 E-value=4.3e-07 Score=98.96 Aligned_cols=193 Identities=16% Similarity=0.245 Sum_probs=95.8
Q ss_pred cccCCCcccCceEEecCCCccc-cH----HHHHHHHHcCCeEEeecC---CCHHHHH---Hh-hh--------cCccccc
Q psy3862 47 FRNSGKTYQGVPIIAANMDTVG-TF----EMAKHLAKHGLFTTIHKY---YTLEEWK---AF-AV--------QNPDVIK 106 (671)
Q Consensus 47 ~r~~~~~~l~~Piv~a~M~~vt-~~----~lA~Ala~~gglgvIh~n---~~~Eeq~---~~-i~--------~~p~~~~ 106 (671)
.+..+++.+.+||++++|.+++ +. .||.++.+.|. ..|.| +++|+.. +. +. ..++.+.
T Consensus 56 ~~~~~p~~l~~p~~is~MS~GaLS~~a~~Ala~ga~~~G~--~~ntGEGg~~~~~~~~~~~~~I~Q~~sg~fGv~~~~l~ 133 (368)
T PF01645_consen 56 EKVEKPLELSIPFMISAMSYGALSEEAKEALAKGANMAGT--ASNTGEGGELPEERKAAKDLRIKQIASGRFGVRPEYLK 133 (368)
T ss_dssp GGS--HHHHHTTEEEEEB-CTTC-HHHHHHHHHHHHHCT---EEEETTT---GGGCSB-TTSSEEEE-TT-TT--HHHHC
T ss_pred hhcCChhhheeeeecccCChhhcCHHHHHHHHHHHHHhCc--eEecCCCCCCHHHhcccCCceEEEcCCCCCCCCHHHhc
Confidence 3445789999999999999975 33 35555555552 23433 4444321 11 11 0111111
Q ss_pred ce---EE--e----cC----CChhh-HHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhC---CCceEEEEE
Q psy3862 107 HV---AV--S----SG----ISAKD-LAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMY---PKHVIIAGN 167 (671)
Q Consensus 107 ~~---~v--~----~G----~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~---P~~~li~g~ 167 (671)
++ .+ + +| ++... .+++.++....|+.+.++-...++. .+++.++|.++|+.. |...++++.
T Consensus 134 ~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~ 213 (368)
T PF01645_consen 134 QADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAG 213 (368)
T ss_dssp C-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-S
T ss_pred CCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCC
Confidence 11 11 1 11 11111 2455566666678888877666554 378889999998765 455677654
Q ss_pred eccHHHHHHHHHCCCcEEEECcCCCce-EEEE-ecccC--Ccchhhhhcc----------cc--CCccccccHHHHHHHH
Q psy3862 168 VVTGEMVEELILSGADVIKVGIGPGSV-CTTR-LKNKT--SDFFLIQFYS----------CI--PQAGNVVTGEMVEELI 231 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdga~G~~-~~t~-v~~~~--~~~~~i~~i~----------~~--p~aGnV~t~~~a~~li 231 (671)
-.....+..+.++|+|+|.+||++|.. .+.. ..+.+ |....+..+. .+ .+.|++.|+..+.-++
T Consensus 214 ~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal 293 (368)
T PF01645_consen 214 RGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL 293 (368)
T ss_dssp TTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH
T ss_pred CcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH
Confidence 333333444889999999999977653 3332 22221 2221111110 11 2799999999999999
Q ss_pred HcCCCEEEEc
Q psy3862 232 LSGADVIKVG 241 (671)
Q Consensus 232 ~aGAdgvkVG 241 (671)
.+|||+|-+|
T Consensus 294 aLGAD~v~ig 303 (368)
T PF01645_consen 294 ALGADAVYIG 303 (368)
T ss_dssp HCT-SEEE-S
T ss_pred hcCCCeeEec
Confidence 9999999888
No 68
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.26 E-value=4.3e-06 Score=91.15 Aligned_cols=256 Identities=17% Similarity=0.199 Sum_probs=153.1
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC------CCCCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM------DTVGTFEMAKHLAKHGLFTTIH--KYYT 366 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M------DtV~~~~mA~~la~~Gglgvih--r~~~ 366 (671)
-.|+.+.|+|..= ..-+++||+++|= ...+..||+-||| ..=+|..+|++-+++|-.-++- -++|
T Consensus 34 ~af~~~~l~PRvL--r~v~~~d~~ttll-----G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s 106 (361)
T cd04736 34 DAFDRWRFIPRRL--VDVSKRDISASLF-----GKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS 106 (361)
T ss_pred HHHHHcCcccccc--CCCCCCCCceeEC-----CccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC
Confidence 4689999999862 2225789999973 3556799998875 5567888999999999988887 6889
Q ss_pred HHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc--cccccccc----ccc------------c-------
Q psy3862 367 LEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQ----SGG------------E------- 421 (671)
Q Consensus 367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~----~~~------------~------- 421 (671)
+||..+.. .-+.-.+....--..+.+-+++..+||.+.||+- -...|.-+ +.. +
T Consensus 107 iEeva~a~-~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w 185 (361)
T cd04736 107 IEDVARQA-DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRW 185 (361)
T ss_pred HHHHHhhc-CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchh
Confidence 99998653 1121112111001111122344456787777763 11112210 000 0
Q ss_pred -----------ccccc--------------------ccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEEC
Q psy3862 422 -----------LTNIE--------------------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLG 468 (671)
Q Consensus 422 -----------~~~~~--------------------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG 468 (671)
+.+.. ......++++++.++. +|+.|+ .+.+-++ ++++|+|+|.|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 186 LLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILS 264 (361)
T ss_pred hhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEEC
Confidence 00000 0011245666776654 777885 5666666 789999999998
Q ss_pred ccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhcc
Q psy3862 469 GMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACT 543 (671)
Q Consensus 469 ~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~ 543 (671)
. -.| ++. + ...+.+.++.++..+..--...+|+ |++++||+|||+ ||+|+++--.
T Consensus 265 n-hGG-----rql---d-------~~~~~~~~L~ei~~~~~~~vi~dGG---Ir~g~Dv~KALaLGA~aV~iGr~~l~~- 324 (361)
T cd04736 265 N-HGG-----RQL---D-------DAIAPIEALAEIVAATYKPVLIDSG---IRRGSDIVKALALGANAVLLGRATLYG- 324 (361)
T ss_pred C-CCc-----CCC---c-------CCccHHHHHHHHHHHhCCeEEEeCC---CCCHHHHHHHHHcCCCEEEECHHHHHH-
Confidence 5 333 111 1 1234455665543322211234443 799999999999 4555444111
Q ss_pred ccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccc
Q psy3862 544 YVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYR 623 (671)
Q Consensus 544 e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~k 623 (671)
-. ..|.+
T Consensus 325 ---------------------------------------------la----------------------~~G~~------ 331 (361)
T cd04736 325 ---------------------------------------------LA----------------------ARGEA------ 331 (361)
T ss_pred ---------------------------------------------HH----------------------hcCHH------
Confidence 00 01111
Q ss_pred cCHHHHHHHHHHHHhhhccccCcccccccc
Q psy3862 624 GDVNDTVQDILGGLRSACTYVGASKLKELP 653 (671)
Q Consensus 624 G~v~~~l~~l~gGLrs~m~y~Ga~~l~el~ 653 (671)
-+++++..|..-|+..|..+|.++++||.
T Consensus 332 -gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 332 -GVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 26778899999999999999999999985
No 69
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.26 E-value=4.4e-06 Score=91.71 Aligned_cols=256 Identities=21% Similarity=0.228 Sum_probs=150.5
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC------CCCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM------DTVGTFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M------DtV~~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
.|+.+.|+|..= ..-+++||+++|= ...+..||+-||| +-=+|..+|++=++.|-.-++- -.+++
T Consensus 41 af~~~~l~PR~L--~dv~~~d~~t~ll-----G~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~sl 113 (381)
T PRK11197 41 DLADIALRQRVL--KDMSDLSLETTLF-----GEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPI 113 (381)
T ss_pred HHHhcceecccc--cCCCCCCCceEEC-----CcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCH
Confidence 488999999762 2336889999973 4567899999886 3447889999999999987776 57789
Q ss_pred HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcccc---cccccc--------c-------cccc-----
Q psy3862 368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQS--------G-------GELT----- 423 (671)
Q Consensus 368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~~--------~-------~~~~----- 423 (671)
||..+.- .-+--.+ ++-.--..+.+-+++..++|...||+. +- .|.-++ . .+..
T Consensus 114 Eeia~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlT-VD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w 191 (381)
T PRK11197 114 EEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFT-VDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQW 191 (381)
T ss_pred HHHHhcc-CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchh
Confidence 9997642 1111011 000000001122344456898888874 22 232210 0 0000
Q ss_pred --------------cccc----------------c------ccccccccccccC-ceeeccccCchhHHH-HHHcCCcEE
Q psy3862 424 --------------NIEY----------------M------FFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFV 465 (671)
Q Consensus 424 --------------~~~~----------------~------~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V 465 (671)
+... . -.-+++|+++.++ .+|+.|+ .+.+-++ ++++|||+|
T Consensus 192 ~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV-~s~~dA~~a~~~Gvd~I 270 (381)
T PRK11197 192 AWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI-LDPEDARDAVRFGADGI 270 (381)
T ss_pred hhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec-CCHHHHHHHHhCCCCEE
Confidence 0000 0 0011455565554 3777885 5555555 789999999
Q ss_pred EECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhH
Q psy3862 466 MLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGL 538 (671)
Q Consensus 466 ~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~ 538 (671)
.|+. .|+. +. + --.+.+.++.+...+.. +. ...+|+ |+++.||+|||+ ||+|++
T Consensus 271 ~Vs~--hGGr----~~---d-------~~~~t~~~L~~i~~a~~~~~~vi~dGG---Ir~g~Di~KALaLGA~~V~iGr~ 331 (381)
T PRK11197 271 VVSN--HGGR----QL---D-------GVLSSARALPAIADAVKGDITILADSG---IRNGLDVVRMIALGADTVLLGRA 331 (381)
T ss_pred EECC--CCCC----CC---C-------CcccHHHHHHHHHHHhcCCCeEEeeCC---cCcHHHHHHHHHcCcCceeEhHH
Confidence 9984 4411 11 0 01233444333222211 11 134443 799999999999 666666
Q ss_pred hHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceE
Q psy3862 539 RSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTV 618 (671)
Q Consensus 539 ~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~ 618 (671)
+-..-. ..|
T Consensus 332 ~l~~la--------------------------------------------------------------------~~G--- 340 (381)
T PRK11197 332 FVYALA--------------------------------------------------------------------AAG--- 340 (381)
T ss_pred HHHHHH--------------------------------------------------------------------hcc---
Confidence 633210 011
Q ss_pred ecccccCHHHHHHHHHHHHhhhccccCcccccccccc
Q psy3862 619 QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR 655 (671)
Q Consensus 619 ~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~ 655 (671)
.--+.+.|..|..-|+..|..+|+++++||++.
T Consensus 341 ----~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 373 (381)
T PRK11197 341 ----QAGVANLLDLIEKEMRVAMTLTGAKSISEITRD 373 (381)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence 112667889999999999999999999999763
No 70
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.26 E-value=2.7e-06 Score=92.87 Aligned_cols=257 Identities=17% Similarity=0.177 Sum_probs=152.0
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
.|+++.|+|.. +..-+++|++++|= ...+..||+-|||- .=++..+|++=+++|-.-++- -++++
T Consensus 51 af~~~~l~PR~--L~dv~~~d~~t~ll-----G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~sl 123 (367)
T TIGR02708 51 AFNHKLIVPHL--LQDVENPSTEIEFL-----GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADL 123 (367)
T ss_pred HHHhcCeeccc--ccCCCCCCCceeeC-----CcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCH
Confidence 48899999986 22335789999974 35678999999874 445788999999999988886 57889
Q ss_pred HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcccc---ccccc----c----c---------------c
Q psy3862 368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQ----S----G---------------G 420 (671)
Q Consensus 368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~----~----~---------------~ 420 (671)
||..+....-+--.+ ++..--..+.+-+++..++|...|++. +- .|.-+ + . .
T Consensus 124 Eev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlT-vD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 202 (367)
T TIGR02708 124 PEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLT-ADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK 202 (367)
T ss_pred HHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence 998764211111111 010000011122344467899888874 22 12110 0 0 0
Q ss_pred ccccccc-----cccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862 421 ELTNIEY-----MFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY 493 (671)
Q Consensus 421 ~~~~~~~-----~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~ 493 (671)
..-+... ...-.+.++++.++ .+++-|+ .+.+.++ +.++|+|+|.|+. .| +|. ...
T Consensus 203 ~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv-~~~eda~~a~~~Gvd~I~VS~--HG-----Grq---------~~~ 265 (367)
T TIGR02708 203 SMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGP-QCPEDADRALKAGASGIWVTN--HG-----GRQ---------LDG 265 (367)
T ss_pred chhhhccccCCCCCHHHHHHHHHhcCCCEEEeCC-CCHHHHHHHHHcCcCEEEECC--cC-----ccC---------CCC
Confidence 0000000 00013445566654 3677774 5566666 6799999999985 33 121 223
Q ss_pred CcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccc
Q psy3862 494 GMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQL 566 (671)
Q Consensus 494 G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~ 566 (671)
+.+...++.+...+.. +. ...+|. |++..|+.|||+ ||+|+++--.
T Consensus 266 ~~a~~~~L~ei~~av~~~i~vi~dGG---Ir~g~Dv~KaLalGAd~V~igR~~l~~------------------------ 318 (367)
T TIGR02708 266 GPAAFDSLQEVAEAVDKRVPIVFDSG---VRRGQHVFKALASGADLVALGRPVIYG------------------------ 318 (367)
T ss_pred CCcHHHHHHHHHHHhCCCCcEEeeCC---cCCHHHHHHHHHcCCCEEEEcHHHHHH------------------------
Confidence 4445566665543321 10 124443 799999999999 3444333111
Q ss_pred cccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCc
Q psy3862 567 NNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA 646 (671)
Q Consensus 567 ~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga 646 (671)
+ +..|.+ -+++++..|...||..|..+|+
T Consensus 319 -------------l-------------------------------a~~G~~-------gv~~~l~~l~~El~~~M~l~G~ 347 (367)
T TIGR02708 319 -------------L-------------------------------ALGGSQ-------GARQVFEYLNKELKRVMQLTGT 347 (367)
T ss_pred -------------H-------------------------------HhcCHH-------HHHHHHHHHHHHHHHHHHHhCC
Confidence 0 011111 2578889999999999999999
Q ss_pred ccccccccc
Q psy3862 647 SKLKELPRR 655 (671)
Q Consensus 647 ~~l~el~~~ 655 (671)
++++||++.
T Consensus 348 ~~i~eL~~~ 356 (367)
T TIGR02708 348 QTIEDVKGF 356 (367)
T ss_pred CCHHHhCcc
Confidence 999999764
No 71
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.24 E-value=3.6e-06 Score=92.53 Aligned_cols=258 Identities=16% Similarity=0.156 Sum_probs=154.6
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYT 366 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~ 366 (671)
-.|+++.|+|.. +..-+++|++++|= ...+..||.-|||- .=+|..+|++=++.|-.-++- -.++
T Consensus 55 ~af~~~~l~PRv--L~dv~~~dt~t~ll-----G~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~s 127 (383)
T cd03332 55 DAFSRWRIVPRM--LRGVTERDLSVELF-----GRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSS 127 (383)
T ss_pred HHHHhcCccccc--cccCCCCCCceeeC-----CccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 348899999976 22335889999983 45678999999864 445888999999999999996 5689
Q ss_pred HHHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcc-c----------cccccccc--ccc---c------
Q psy3862 367 LEEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGG-M----------FAGHDQSG--GEL---T------ 423 (671)
Q Consensus 367 ~e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~-~----------a~gh~~~~--~~~---~------ 423 (671)
+||..+...+-+--.+ ++...-..+.+-+++..++|++.||+.- + -++..... ..+ .
T Consensus 128 lEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~ 207 (383)
T cd03332 128 IEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFR 207 (383)
T ss_pred HHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhh
Confidence 9998765211111111 1100000111223444578999998851 0 01110000 000 0
Q ss_pred --------cc--------------------cccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccC
Q psy3862 424 --------NI--------------------EYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAG 473 (671)
Q Consensus 424 --------~~--------------------~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G 473 (671)
+. .......++++++.++ .+|..|+ .+.+-++ ++++|+|+|.|.. .|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsn--hG 284 (383)
T cd03332 208 KKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI-LHPDDARRAVEAGVDGVVVSN--HG 284 (383)
T ss_pred hccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC-CCHHHHHHHHHCCCCEEEEcC--CC
Confidence 00 0001123344455443 3777886 5555555 7899999999985 44
Q ss_pred CccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccC
Q psy3862 474 HDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVG 546 (671)
Q Consensus 474 ~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~ 546 (671)
+ |. ...+.|.+.++.+...+..+ . ...+|+ |+++.||+|||+ |++|.++--.
T Consensus 285 G-----r~---------~d~~~~t~~~L~ei~~~~~~~~~vi~dGG---Ir~G~Dv~KALaLGA~~v~iGr~~l~~---- 343 (383)
T cd03332 285 G-----RQ---------VDGSIAALDALPEIVEAVGDRLTVLFDSG---VRTGADIMKALALGAKAVLIGRPYAYG---- 343 (383)
T ss_pred C-----cC---------CCCCcCHHHHHHHHHHHhcCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHH----
Confidence 1 21 12367788887765443321 1 123332 799999999999 4444443211
Q ss_pred cccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCH
Q psy3862 547 ASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDV 626 (671)
Q Consensus 547 g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v 626 (671)
-. ..|.+ -+
T Consensus 344 ------------------------------------------l~----------------------~~G~~-------gv 352 (383)
T cd03332 344 ------------------------------------------LA----------------------LGGED-------GV 352 (383)
T ss_pred ------------------------------------------HH----------------------hccHH-------HH
Confidence 00 01111 17
Q ss_pred HHHHHHHHHHHhhhccccCccccccccc
Q psy3862 627 NDTVQDILGGLRSACTYVGASKLKELPR 654 (671)
Q Consensus 627 ~~~l~~l~gGLrs~m~y~Ga~~l~el~~ 654 (671)
++.+..+...|+..|..+|.++++||++
T Consensus 353 ~~~l~~l~~El~~~m~l~G~~~i~~l~~ 380 (383)
T cd03332 353 EHVLRNLLAELDLTMGLAGIRSIAELTR 380 (383)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 7889999999999999999999999975
No 72
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.21 E-value=4.8e-06 Score=85.05 Aligned_cols=182 Identities=21% Similarity=0.128 Sum_probs=106.3
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccccc-ceee--eccc---Ch-hhHHHHHHcCC
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDVIK-HVAD--GGCT---SP-GDVAKAMGAGA 403 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~~~-~v~~--~~~~---~~-~~~~~l~~aG~ 403 (671)
..||+.+||+.+++++||+++++.|++|++| ++.+++++.+.+++.++... .+.. .... .. +.++.+.++|+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~ 81 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGV 81 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCC
Confidence 3799999999999999999999999999999 67788888777766543221 1111 1111 12 33455678999
Q ss_pred cEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862 404 DFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 404 d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
|.|.+.+. .+. +. ++.++++--.+ ...+.+.+.++ +.+.|+|++.+...++| ..+..
T Consensus 82 d~v~l~~~---~~~---~~----------~~~~~~~~i~~--i~~v~~~~~~~~~~~~gad~i~~~~~~~~---G~~~~- 139 (236)
T cd04730 82 PVVSFSFG---PPA---EV----------VERLKAAGIKV--IPTVTSVEEARKAEAAGADALVAQGAEAG---GHRGT- 139 (236)
T ss_pred CEEEEcCC---CCH---HH----------HHHHHHcCCEE--EEeCCCHHHHHHHHHcCCCEEEEeCcCCC---CCCCc-
Confidence 99998522 111 11 11222211111 22234444445 56899999887421222 11100
Q ss_pred EeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862 483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS 548 (671)
Q Consensus 483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~ 548 (671)
...+....+.++.....--....|+ |....|+.+++. +|+|+.+..+.|+|..
T Consensus 140 ----------~~~~~~~~i~~i~~~~~~Pvi~~GG---I~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~ 197 (236)
T cd04730 140 ----------FDIGTFALVPEVRDAVDIPVIAAGG---IADGRGIAAALALGADGVQMGTRFLATEESGAS 197 (236)
T ss_pred ----------cccCHHHHHHHHHHHhCCCEEEECC---CCCHHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence 1123344555432211110112222 566688999887 8999999999988766
No 73
>PLN02979 glycolate oxidase
Probab=98.14 E-value=1e-05 Score=88.03 Aligned_cols=254 Identities=21% Similarity=0.214 Sum_probs=151.4
Q ss_pred eeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCHHHHH
Q psy3862 300 VMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTLEEWK 371 (671)
Q Consensus 300 Vll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~e~~~ 371 (671)
+.|+|.. +..-+++|++++|= ...+..||+-|||- .=+|..+|++-++.|-.-++- -..++||..
T Consensus 44 ~~lrPRv--Lrdv~~~dtst~ll-----G~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa 116 (366)
T PLN02979 44 CDFRPRI--LIDVSKIDMTTTVL-----GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA 116 (366)
T ss_pred eEEECcc--ccCCCCCCCceEEC-----CcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH
Confidence 4677764 22336889999974 45678999999864 346778999999999998886 567899987
Q ss_pred HHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEc--cccccccccc----------cccccc-------------
Q psy3862 372 AFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQSG----------GELTNI------------- 425 (671)
Q Consensus 372 ~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~~~----------~~~~~~------------- 425 (671)
+. ..-+--.+ ++..--..+.+-+++..++|.+.|++. ....|.-+.- +.+.+.
T Consensus 117 ~a-~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~ 195 (366)
T PLN02979 117 ST-GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEAND 195 (366)
T ss_pred hc-cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccc
Confidence 64 21111011 000000011122344467899888874 1112221000 000000
Q ss_pred ------c------ccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862 426 ------E------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF 492 (671)
Q Consensus 426 ------~------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g 492 (671)
. ....-.++|+++.++- +|+-|+....+..+++++|+|+|.|+. .|+ | ++.
T Consensus 196 ~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsn--hGG-----r---------qld 259 (366)
T PLN02979 196 SGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSN--HGA-----R---------QLD 259 (366)
T ss_pred hhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECC--CCc-----C---------CCC
Confidence 0 0011345667777753 788886544444458899999999985 341 1 122
Q ss_pred eCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 493 YGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 493 ~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
.+.+.+.++.+++.+.. +. ...+|+ |+++.||+||++ |++|+++--.-
T Consensus 260 ~~p~t~~~L~ei~~~~~~~~~Vi~dGG---Ir~G~Di~KALALGAdaV~iGrp~L~~l---------------------- 314 (366)
T PLN02979 260 YVPATISALEEVVKATQGRIPVFLDGG---VRRGTDVFKALALGASGIFIGRPVVFSL---------------------- 314 (366)
T ss_pred CchhHHHHHHHHHHHhCCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHHH----------------------
Confidence 34456677766543321 11 123443 799999999999 44444432110
Q ss_pred ccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccC
Q psy3862 566 LNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVG 645 (671)
Q Consensus 566 ~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~G 645 (671)
...| ..| +++.+..+..-|+..|..+|
T Consensus 315 ----------------------------------------------a~~G------~~G-v~~~l~~l~~El~~~m~l~G 341 (366)
T PLN02979 315 ----------------------------------------------AAEG------EAG-VRKVLQMLRDEFELTMALSG 341 (366)
T ss_pred ----------------------------------------------HhcC------HHH-HHHHHHHHHHHHHHHHHHhC
Confidence 0112 134 78889999999999999999
Q ss_pred cccccccccc
Q psy3862 646 ASKLKELPRR 655 (671)
Q Consensus 646 a~~l~el~~~ 655 (671)
.++++||++.
T Consensus 342 ~~~i~el~~~ 351 (366)
T PLN02979 342 CRSLKEISRN 351 (366)
T ss_pred CCCHHHhChh
Confidence 9999999864
No 74
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.02 E-value=8.6e-05 Score=79.07 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=110.5
Q ss_pred eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--ee-------c-C--------------------CC
Q psy3862 41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IH-------K-Y--------------------YT 90 (671)
Q Consensus 41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih-------~-n--------------------~~ 90 (671)
|++++ .+++|+-||+.+++......+....+++. |+|+ +. . | ..
T Consensus 1 l~~~~-----~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVEL-----FGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEE-----CCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 35566 47899999999986444344445556666 4553 30 0 0 12
Q ss_pred HHHHHHhhhcCcc-cccceEEec-CCChhhHHHHHHHHHhC-CCceEEEeecc--C---------CCChHHHHHHHHHHH
Q psy3862 91 LEEWKAFAVQNPD-VIKHVAVSS-GISAKDLAGLKEILAAL-PEIEYICLDVA--N---------GYTQTFVDFVRRIRE 156 (671)
Q Consensus 91 ~Eeq~~~i~~~p~-~~~~~~v~~-G~~~~d~~rl~~l~~a~-~~~d~Ivld~a--~---------G~~~~~~~~ik~lr~ 156 (671)
.+.+.+.++..+. ...|+.+++ |.+++++.++.+.++.. +..+.+-+|.. + +.++...+.++.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~ 154 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKD 154 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 3333333322111 112455544 56777776666666532 34677777643 1 123455667777775
Q ss_pred h--CCCceEEEEEe-ccHHHHHHHHHCCCcEEEECcC-CCce-E-EE---Eeccc---C--Cc-----chhhhhcc---c
Q psy3862 157 M--YPKHVIIAGNV-VTGEMVEELILSGADVIKVGIG-PGSV-C-TT---RLKNK---T--SD-----FFLIQFYS---C 214 (671)
Q Consensus 157 ~--~P~~~li~g~v-~t~e~a~~Li~AGaD~IvVdga-~G~~-~-~t---~v~~~---~--~~-----~~~i~~i~---~ 214 (671)
. .|...++..+. ...+.++.|.++|+|.|.+-.. +|.. . .+ .+... + +. +..+..++ .
T Consensus 155 ~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 234 (300)
T TIGR01037 155 KTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD 234 (300)
T ss_pred hcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence 4 57666665433 2356788899999999987421 1110 0 00 00000 0 10 12222222 2
Q ss_pred cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 215 IP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+| ..|||.|++.+..++++|||+|.+|
T Consensus 235 ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 56 5899999999999999999999988
No 75
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.96 E-value=2.6e-05 Score=84.36 Aligned_cols=139 Identities=27% Similarity=0.258 Sum_probs=79.2
Q ss_pred eCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccc------------------c----------
Q psy3862 331 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDV------------------I---------- 381 (671)
Q Consensus 331 ~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~------------------~---------- 381 (671)
...|||.++|-.+++++||.+.++.||||+|- -+.++|+..+++.+.+++ .
T Consensus 10 i~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~ 89 (330)
T PF03060_consen 10 IKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGN 89 (330)
T ss_dssp -SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHH
T ss_pred CCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHH
Confidence 46899999999999999999999999999999 466887766666443111 0
Q ss_pred -----------c--------------ceeeeccc---------------------ChhhHHHHHHcCCcEEEEccccc-c
Q psy3862 382 -----------K--------------HVADGGCT---------------------SPGDVAKAMGAGADFVMLGGMFA-G 414 (671)
Q Consensus 382 -----------~--------------~v~~~~~~---------------------~~~~~~~l~~aG~d~i~id~~a~-g 414 (671)
+ .+..+.+. +.++..++.++|+|+||++|.-. |
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGG 169 (330)
T PF03060_consen 90 AVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGG 169 (330)
T ss_dssp HHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSE
T ss_pred HHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCC
Confidence 0 01111111 23445556789999999998654 7
Q ss_pred cccc----ccccccccccccccccccccccC-ceeeccccCchh-HHHHHHcCCcEEEECccccCCccCCC
Q psy3862 415 HDQS----GGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQSGG 479 (671)
Q Consensus 415 h~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~-~a~~l~aGAd~V~vG~~g~G~s~ctt 479 (671)
|.-. ...++..+ ++... .+|.+|=+.++. ++.+|..|||+|.+|.-+-.+.+|+.
T Consensus 170 H~g~~~~~~~~L~~~v----------~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~ 230 (330)
T PF03060_consen 170 HRGFEVGSTFSLLPQV----------RDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGA 230 (330)
T ss_dssp E---SSG-HHHHHHHH----------HHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S
T ss_pred CCCccccceeeHHHHH----------hhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccC
Confidence 7541 22222222 22222 244444456665 46679999999999964444444443
No 76
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.94 E-value=3.5e-05 Score=83.91 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=95.9
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
-|+++.|+|..-.-. +++||+++|= ...+..||+-|||=... +-.+|++=++.|-..++- ..+++
T Consensus 35 af~~~~l~pr~L~dv--~~~d~~~~~l-----G~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~ 107 (344)
T cd02922 35 AFQRIRFRPRVLRDV--EKVDTSTTIL-----GHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSL 107 (344)
T ss_pred HHHhCceeccccCCC--CCCCCceEEC-----CcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCH
Confidence 489999999873222 6899999973 45688999999998333 348999999999888886 77899
Q ss_pred HHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEcccc---ccc---------cccc----cc-----
Q psy3862 368 EEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLGGMF---AGH---------DQSG----GE----- 421 (671)
Q Consensus 368 e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id~~a---~gh---------~~~~----~~----- 421 (671)
|+..+... |+. +.+.---.-.+ +-+++..++|++.|++. +- .|. ..-. -+
T Consensus 108 e~v~~~~~--~~~-~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvlt-vD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~ 183 (344)
T cd02922 108 EEIVDARP--PDQ-PLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLT-VDAPVLGKRERDERLKAEEAVSDGPAGKKTKA 183 (344)
T ss_pred HHHHHhcC--CCC-cEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEE-CCCCCcCcchhhhhhcCCcCcccccccccccc
Confidence 99765421 110 11110000111 22333457899999985 22 121 1000 00
Q ss_pred ----ccccc-cc-----ccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 422 ----LTNIE-YM-----FFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 422 ----~~~~~-~~-----~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
..... .. ....+.++++.++ .+++-|+ .+.+.++ +.++|+|+|.|..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 184 KGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred ccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEEC
Confidence 00000 01 1123444555553 3667775 5555555 6899999999975
No 77
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.94 E-value=1.4e-05 Score=87.47 Aligned_cols=207 Identities=21% Similarity=0.212 Sum_probs=117.6
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC------CCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT------VGTFEMAKHLAKHGLFTTIH--KYYT 366 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt------V~~~~mA~~la~~Gglgvih--r~~~ 366 (671)
-.|+++.|+|..- ..-+++||+++|= ...+..||+-|||-. -++-.+|++-++.|-...+= ...+
T Consensus 28 ~af~~i~l~prvL--~dv~~~D~st~~l-----G~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~ 100 (356)
T PF01070_consen 28 EAFDRIRLRPRVL--RDVSDPDTSTTFL-----GQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSAS 100 (356)
T ss_dssp HGGGGEEE---SS--SBGSS-BSSEEET-----TEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSC
T ss_pred HHHHHhccccccc--CCcccCCCCeeeC-----CccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCC
Confidence 4599999999985 3336889999984 577899999999852 24567899999999888876 7788
Q ss_pred HHHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEcccc------------ccccccc-------ccc
Q psy3862 367 LEEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLGGMF------------AGHDQSG-------GEL 422 (671)
Q Consensus 367 ~e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id~~a------------~gh~~~~-------~~~ 422 (671)
+|+..+... .+. +.--....+ +.+.+.-++|++.|+|+ +- +|++.-. .+.
T Consensus 101 ~e~ia~~~~-~~~----~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vt-vD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~ 174 (356)
T PF01070_consen 101 LEEIAAASG-GPL----WFQLYPPRDRELTRDLIRRAEAAGAKALVVT-VDAPQEGNRERDLRNGFSVPPKLSPRNLLDG 174 (356)
T ss_dssp HHHHHHHCT-SEE----EEEEEGBSSHHHHHHHHHHHHHTTCSEEEEE-TSHSSHHHBHHHHHHTCCCSTTHCTTCGTTT
T ss_pred HHHHHhhcc-CCe----EEEEEEecCHHHHHHHHHHhhcCCCCEEEEE-CcCcccCCcccccccccCCCccccccccccc
Confidence 988876532 111 111111122 22344456899999997 32 1221000 000
Q ss_pred cc--------------------------ccc------cccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 423 TN--------------------------IEY------MFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 423 ~~--------------------------~~~------~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.. ... .....++++++.++- +|+=|+....++.++.++|+|+|.|+.
T Consensus 175 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~ 254 (356)
T PF01070_consen 175 ASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSN 254 (356)
T ss_dssp TTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEES
T ss_pred ccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecC
Confidence 00 000 011123344444443 677776555555558899999999984
Q ss_pred cccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHHH
Q psy3862 470 MFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQD 533 (671)
Q Consensus 470 ~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAiav 533 (671)
.|+ |+ +-+|.+.+.++.+...++. +. ...+|+ |++.-||+|||+-
T Consensus 255 --hGG----r~----------~d~~~~~~~~L~~i~~~~~~~~~i~~dgG---ir~g~Dv~kalaL 301 (356)
T PF01070_consen 255 --HGG----RQ----------LDWGPPTIDALPEIRAAVGDDIPIIADGG---IRRGLDVAKALAL 301 (356)
T ss_dssp --GTG----TS----------STTS-BHHHHHHHHHHHHTTSSEEEEESS-----SHHHHHHHHHT
T ss_pred --CCc----cc----------CccccccccccHHHHhhhcCCeeEEEeCC---CCCHHHHHHHHHc
Confidence 551 11 2368888887766544321 11 123443 7899999999983
No 78
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=97.88 E-value=4.2e-05 Score=83.58 Aligned_cols=221 Identities=21% Similarity=0.192 Sum_probs=122.4
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc---cc-H--HHHHHHHHcCCeEEe--ecCC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV---GT-F--EMAKHLAKHGLFTTI--HKYY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v---t~-~--~lA~Ala~~gglgvI--h~n~ 89 (671)
...|+|+.|+|+.++..+ ++||++++ -+.++++|+++++|++. .. . --|.+...++-.+++ =..+
T Consensus 33 ~~~f~~i~l~~~~L~~v~--~idlst~~-----~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~ 105 (360)
T COG1304 33 REAFEDIALRPRVLPEVD--DIDLSTTF-----LGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQ 105 (360)
T ss_pred hhhhhhheeecccCCCcc--cCccceEe-----cCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccC
Confidence 369999999999999875 99999999 48899999999999987 32 2 233333334433331 1346
Q ss_pred CHHHHHHh---h------hc-Ccccc---cceEE-----ecCCChhhHHHHH---HHHHhCCCceEEEeeccCCCC----
Q psy3862 90 TLEEWKAF---A------VQ-NPDVI---KHVAV-----SSGISAKDLAGLK---EILAALPEIEYICLDVANGYT---- 144 (671)
Q Consensus 90 ~~Eeq~~~---i------~~-~p~~~---~~~~v-----~~G~~~~d~~rl~---~l~~a~~~~d~Ivld~a~G~~---- 144 (671)
++|+..+. . ++ +|+.. ++.++ .+.. +.-.+|.+ +.+.+ ....++.+..++..
T Consensus 106 ~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~-~~~~~r~~d~~~~i~a--~~~~~h~n~~qe~~~p~g 182 (360)
T COG1304 106 RIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDS-PVGGERERDAVNGISA--PALAIHLNVLQEATQPEG 182 (360)
T ss_pred cHHHhhcCcchhhhhHHHHHhhHHHHHHHHhcCCcceeeccCc-cchHHHHHHHHhccCC--CcccccccHHHHhcCCcc
Confidence 67654211 1 11 12222 11111 1110 01123333 33333 22233443333211
Q ss_pred ----hHHHHHHHHHHH-h-CCCce--------------EEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862 145 ----QTFVDFVRRIRE-M-YPKHV--------------IIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS 204 (671)
Q Consensus 145 ----~~~~~~ik~lr~-~-~P~~~--------------li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~ 204 (671)
..+.+.+++... . .|... ++.-.|.+++++..+.+.|+|.|++--.+|.- +=.-.+
T Consensus 183 ~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrq----lD~g~s 258 (360)
T COG1304 183 DRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQ----LDWGIS 258 (360)
T ss_pred cccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCcc----ccCCCC
Confidence 112222232211 1 13222 22223456678888888888888775544411 101124
Q ss_pred cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHH
Q psy3862 205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECA 268 (671)
Q Consensus 205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~ 268 (671)
++..++.+. .+| +-|||=++--+.-+|++|||++ |+|+|.+.+...--
T Consensus 259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v----------------~igrp~L~~l~~~g 313 (360)
T COG1304 259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAV----------------GIGRPFLYGLAAGG 313 (360)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchh----------------hhhHHHHHHHHhcc
Confidence 555555553 133 6999999999999999999988 67788887766544
No 79
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.87 E-value=5.7e-05 Score=75.36 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEE
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvk 239 (671)
.+.+++|+++|++.|.++..+... .+..+++.+|+ ++ -+|+|.|.+++..++++|||++-
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~---------~~iGag~v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPE---------ALIGAGTVLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 477889999999999887654321 11112222221 11 48899999999999999999994
No 80
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.74 E-value=0.00039 Score=73.49 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=105.4
Q ss_pred CCcccCceEEecCCCccccHHHHHHHHHcCCeEE--e---------------------------------ec----CCCH
Q psy3862 51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--I---------------------------------HK----YYTL 91 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--I---------------------------------h~----n~~~ 91 (671)
.+++|+-||+.++.......++...+...| +|. + +. |..+
T Consensus 4 ~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~ 82 (289)
T cd02810 4 LGLKLKNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGL 82 (289)
T ss_pred CCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCH
Confidence 368889999999887766666666566653 321 1 10 1223
Q ss_pred HHHHHhhhcC-cc-cccceEEecC-CChhhHHHHHHHHHhCCCceEEEeecc--CC--------CChHHHHHHHHHHHh-
Q psy3862 92 EEWKAFAVQN-PD-VIKHVAVSSG-ISAKDLAGLKEILAALPEIEYICLDVA--NG--------YTQTFVDFVRRIREM- 157 (671)
Q Consensus 92 Eeq~~~i~~~-p~-~~~~~~v~~G-~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G--------~~~~~~~~ik~lr~~- 157 (671)
|++.+.+.+. .. ...|+.++++ .+++++.++.+.+... +.+++-++.. +. .++.+.+.++.+++.
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~-G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERA-GAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 3333333211 11 1234555443 4566664444433331 5677766543 11 124455667777764
Q ss_pred -CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCc-e-EEE----Eeccc---C---C----cchhhhhcc----
Q psy3862 158 -YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGS-V-CTT----RLKNK---T---S----DFFLIQFYS---- 213 (671)
Q Consensus 158 -~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~-~-~~t----~v~~~---~---~----~~~~i~~i~---- 213 (671)
+|...++..... ..+.++.|.++|||+|++-+.-.. . ... ..+.. + + .+..+..+.
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~ 241 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ 241 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC
Confidence 465556665432 357788999999999998542111 0 000 00000 0 0 111122221
Q ss_pred -ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 -CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 -~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| ..|||-|.+.+..++++|||+|.||
T Consensus 242 ~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 242 LDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 245 6999999999999999999999888
No 81
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=97.74 E-value=0.00012 Score=79.96 Aligned_cols=253 Identities=26% Similarity=0.304 Sum_probs=146.4
Q ss_pred CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCC
Q psy3862 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYT 366 (671)
Q Consensus 295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~ 366 (671)
-+|+|+.|+|+--.--+ ++||+++|- ..++..|++=|+|=--+ +.--|+.....|-++++= -.++
T Consensus 34 ~~f~~i~l~~~~L~~v~--~idlst~~~-----G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ 106 (360)
T COG1304 34 EAFEDIALRPRVLPEVD--DIDLSTTFL-----GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQR 106 (360)
T ss_pred hhhhhheeecccCCCcc--cCccceEec-----CccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCc
Confidence 58999999998743332 999999985 56789999999996552 222444444444444443 4555
Q ss_pred HHHHHHHH------hcCcccccceeeecccChhhHHHHHHcCCcEEEEc-----c----------cc----cccc-----
Q psy3862 367 LEEWKAFA------VQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG-----G----------MF----AGHD----- 416 (671)
Q Consensus 367 ~e~~~~~v------~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id-----~----------~a----~gh~----- 416 (671)
+|+..+.. ...++. .++=+.+..++|++-|+.. + .. ..|.
T Consensus 107 ie~~~~~~~~q~y~~~~R~~----------~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe 176 (360)
T COG1304 107 IEEVAAAPPFQLYFSKDREF----------APNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQE 176 (360)
T ss_pred HHHhhcCcchhhhhHHHHHh----------hHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHH
Confidence 55543211 000000 0000112234455555541 0 00 0010
Q ss_pred --------cccc---cccccc-ccccc-----cccccccccCc-eeeccccCchhHHHHHHcCCcEEEECccccCCccCC
Q psy3862 417 --------QSGG---ELTNIE-YMFFP-----LVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG 478 (671)
Q Consensus 417 --------~~~~---~~~~~~-~~~~~-----~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ct 478 (671)
.... .+..+. +...| .+.++++++.. ++.-|+..+.|+..+-.+|+|.|-|-. .|.
T Consensus 177 ~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsn--hgg---- 250 (360)
T COG1304 177 ATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSN--HGG---- 250 (360)
T ss_pred hcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEc--CCC----
Confidence 0000 000000 11222 23334444433 667786666888888899999998876 331
Q ss_pred CcEEEeCCeEEEEeeCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccccc
Q psy3862 479 GELIEKDGKKVKLFYGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLK 551 (671)
Q Consensus 479 t~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~ 551 (671)
| ++=+|.+++.++.++..+..+ . ...+|+ |++.=|++|||| +++|.++-..-.
T Consensus 251 -r---------qlD~g~st~~~L~ei~~av~~~~~vi~dGG---iR~G~Dv~KAlALGA~~v~igrp~L~~l~------- 310 (360)
T COG1304 251 -R---------QLDWGISTADSLPEIVEAVGDRIEVIADGG---IRSGLDVAKALALGADAVGIGRPFLYGLA------- 310 (360)
T ss_pred -c---------cccCCCChHHHHHHHHHHhCCCeEEEecCC---CCCHHHHHHHHHhCCchhhhhHHHHHHHH-------
Confidence 2 344788999888877665542 1 124443 788999999999 777777632210
Q ss_pred ccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHH
Q psy3862 552 ELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQ 631 (671)
Q Consensus 552 e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~ 631 (671)
..|. .-+.+.|.
T Consensus 311 -------------------------------------------------------------~~g~-------~GV~~~le 322 (360)
T COG1304 311 -------------------------------------------------------------AGGE-------AGVERVLE 322 (360)
T ss_pred -------------------------------------------------------------hccH-------HHHHHHHH
Confidence 0111 12567889
Q ss_pred HHHHHHhhhccccCcccccccccccEE
Q psy3862 632 DILGGLRSACTYVGASKLKELPRRATF 658 (671)
Q Consensus 632 ~l~gGLrs~m~y~Ga~~l~el~~~a~F 658 (671)
.+...|+.+|.-+|+++|+||++..-+
T Consensus 323 ~~~~El~~~M~L~G~~~i~el~~~~l~ 349 (360)
T COG1304 323 IIRKELKIAMALTGAKNIEELKRVPLV 349 (360)
T ss_pred HHHHHHHHHHHhcCCCcHHHhccCcee
Confidence 999999999999999999999876443
No 82
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.72 E-value=9.4e-05 Score=82.12 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=40.2
Q ss_pred eeCcceEecCCC-CCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862 330 YQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ 376 (671)
Q Consensus 330 ~~~iPiIaa~MD-tV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~ 376 (671)
-+..|||.++|- .+++++|+.++++.||||++- -++++|+..+.|.+
T Consensus 11 giryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ 59 (418)
T cd04742 11 GLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIER 59 (418)
T ss_pred CCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHH
Confidence 356899999998 799999999999999999999 67788776665543
No 83
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.71 E-value=7.4e-05 Score=81.52 Aligned_cols=256 Identities=19% Similarity=0.203 Sum_probs=146.4
Q ss_pred CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC------CCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862 296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT------VGTFEMAKHLAKHGLFTTIH--KYYTL 367 (671)
Q Consensus 296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt------V~~~~mA~~la~~Gglgvih--r~~~~ 367 (671)
.|+.+.|+|..= ..-+++|++++|= ...+..||+-|||-. =++..+|++=++.|-.-++- -.+++
T Consensus 43 a~~~~~l~prvL--~dv~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~ 115 (351)
T cd04737 43 AFNHKQIVPRVL--QGVESPDTSTELL-----GIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSL 115 (351)
T ss_pred HHHhcCeechhc--cCCCCCCCceEeC-----CccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCH
Confidence 488999999862 2235789999873 456789999998753 34567888888888888765 57889
Q ss_pred HHHHHHHhcCcccccc-eeeecccChhhHHHHHHcCCcEEEEcccc---ccccccccc----------ccccc-------
Q psy3862 368 EEWKAFAVQNPDVIKH-VADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQSGGE----------LTNIE------- 426 (671)
Q Consensus 368 e~~~~~v~~~~~~~~~-v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~~~~~----------~~~~~------- 426 (671)
||..+.-..-+..++. +..--...++-+++..++|+..|++. +- .|+-+.-.. .....
T Consensus 116 Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlT-vD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 194 (351)
T cd04737 116 EEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILT-ADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG 194 (351)
T ss_pred HHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence 9987642111111110 00000011222344457788877774 21 122100000 00000
Q ss_pred -------c-----cccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862 427 -------Y-----MFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF 492 (671)
Q Consensus 427 -------~-----~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g 492 (671)
. .....+.++++.++ .++.-|+ .+.+-++ +.++|||+|.|.. .| ++. +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsn--hG-----Gr~---------ld 257 (351)
T cd04737 195 KGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI-QSPEDADVAINAGADGIWVSN--HG-----GRQ---------LD 257 (351)
T ss_pred cchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecC-CCHHHHHHHHHcCCCEEEEeC--CC-----Ccc---------CC
Confidence 0 01122335666654 3666664 5556555 6899999999974 33 121 11
Q ss_pred eCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862 493 YGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQ 565 (671)
Q Consensus 493 ~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~ 565 (671)
.+.+...++.+.+.+... . ...+|. |++..|++|||+ ||+|..+
T Consensus 258 ~~~~~~~~l~~i~~a~~~~i~vi~dGG---Ir~g~Di~kaLalGA~~V~iGr~~-------------------------- 308 (351)
T cd04737 258 GGPASFDSLPEIAEAVNHRVPIIFDSG---VRRGEHVFKALASGADAVAVGRPV-------------------------- 308 (351)
T ss_pred CCchHHHHHHHHHHHhCCCCeEEEECC---CCCHHHHHHHHHcCCCEEEECHHH--------------------------
Confidence 233445555554333211 0 123332 789999999998 3333322
Q ss_pred ccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccC
Q psy3862 566 LNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVG 645 (671)
Q Consensus 566 ~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~G 645 (671)
.||.+. .|.+ -+++.+..|..-|+..|..+|
T Consensus 309 --------------------l~~la~----------------------~G~~-------gv~~~l~~l~~El~~~m~l~G 339 (351)
T cd04737 309 --------------------LYGLAL----------------------GGAQ-------GVASVLEHLNKELKIVMQLAG 339 (351)
T ss_pred --------------------HHHHhh----------------------chHH-------HHHHHHHHHHHHHHHHHHHHC
Confidence 122111 1211 177888999999999999999
Q ss_pred ccccccccc
Q psy3862 646 ASKLKELPR 654 (671)
Q Consensus 646 a~~l~el~~ 654 (671)
+++++||++
T Consensus 340 ~~~i~el~~ 348 (351)
T cd04737 340 TRTIEDVKR 348 (351)
T ss_pred CCCHHHhCC
Confidence 999999975
No 84
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.66 E-value=0.00043 Score=74.94 Aligned_cols=197 Identities=15% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--eec--------------------------
Q psy3862 36 RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IHK-------------------------- 87 (671)
Q Consensus 36 ~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih~-------------------------- 87 (671)
..+.||++++ .+++|+-||+.++- .....+....+... |+|. +..
T Consensus 34 ~~~~~L~~~~-----~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~ 106 (327)
T cd04738 34 YDDPRLEVEV-----FGLTFPNPVGLAAG-FDKNAEAIDALLAL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 106 (327)
T ss_pred CCCCCcceEE-----CCEECCCCCEeCcC-CCCCHHHHHHHHHC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeec
Confidence 3678899999 58999999988764 33344444444543 4432 110
Q ss_pred ----CCCHHHHHHhhhcCcccccceEEecCCC--------hhhHHHHHHHHHhCCCceEEEeeccCC---------CChH
Q psy3862 88 ----YYTLEEWKAFAVQNPDVIKHVAVSSGIS--------AKDLAGLKEILAALPEIEYICLDVANG---------YTQT 146 (671)
Q Consensus 88 ----n~~~Eeq~~~i~~~p~~~~~~~v~~G~~--------~~d~~rl~~l~~a~~~~d~Ivld~a~G---------~~~~ 146 (671)
|..+|.+.+.+++......|+.++++-+ .+|+.++.+.+.. .++++-+|..-- ++..
T Consensus 107 ~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~--~ad~ielN~scP~~~g~~~~~~~~~ 184 (327)
T cd04738 107 MGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP--YADYLVVNVSSPNTPGLRDLQGKEA 184 (327)
T ss_pred CCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh--hCCEEEEECCCCCCCccccccCHHH
Confidence 1112333333322111123455554322 2333332222232 367777664211 1234
Q ss_pred HHHHHHHHHHh-------CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCC-CceEEE--Eecc---cC--C----
Q psy3862 147 FVDFVRRIREM-------YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGP-GSVCTT--RLKN---KT--S---- 204 (671)
Q Consensus 147 ~~~~ik~lr~~-------~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~-G~~~~t--~v~~---~~--~---- 204 (671)
+.+.++.+++. .|...++..+.. ..+.++.|.++|||.|++-..- +-.-.. ..+. -+ +
T Consensus 185 ~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~ 264 (327)
T cd04738 185 LRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKE 264 (327)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhH
Confidence 45556665532 576667764432 3567888999999999864310 000000 0000 00 0
Q ss_pred -cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 205 -DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 205 -~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+..+..++ .+| ..|||-|++.+..++.+|||+|.||
T Consensus 265 ~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 265 RSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 011222221 245 6999999999999999999999998
No 85
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.63 E-value=0.0016 Score=69.52 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=110.0
Q ss_pred eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--eec----------------------------CC
Q psy3862 40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IHK----------------------------YY 89 (671)
Q Consensus 40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih~----------------------------n~ 89 (671)
||++++ .+++|+-||+.++-......++...+++.| +|. +.. |.
T Consensus 1 ~l~~~~-----~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVEL-----PGLKLKNPVMPASGTFGFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEE-----CCEECCCCcEECCcCCCCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 678888 489999999998754454556666555543 332 210 12
Q ss_pred CHHHHHHhhhcC-cccccceEEec-CCChhhHHHHHHHHHhCCC-ceEEEeec-----cC-CC-----ChHHHHHHHHHH
Q psy3862 90 TLEEWKAFAVQN-PDVIKHVAVSS-GISAKDLAGLKEILAALPE-IEYICLDV-----AN-GY-----TQTFVDFVRRIR 155 (671)
Q Consensus 90 ~~Eeq~~~i~~~-p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~-~d~Ivld~-----a~-G~-----~~~~~~~ik~lr 155 (671)
.++++.+.++.. .....|+.+++ |.+++++.++.+.++.. + .|.+-++. .+ |. ++...+.++.++
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~a-G~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKA-PNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhcc-CCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 233333333211 11123455554 45667776555555432 4 77876643 33 21 244566677776
Q ss_pred Hh--CCCceEEEEEec-cHHHHHHHHHCCCcEEEE-CcCCCce-EE-E---Eeccc---------CC-cchhhhhcc---
Q psy3862 156 EM--YPKHVIIAGNVV-TGEMVEELILSGADVIKV-GIGPGSV-CT-T---RLKNK---------TS-DFFLIQFYS--- 213 (671)
Q Consensus 156 ~~--~P~~~li~g~v~-t~e~a~~Li~AGaD~IvV-dga~G~~-~~-t---~v~~~---------~~-~~~~i~~i~--- 213 (671)
+. +|...++..+.. ..+.++.|.++|+|.|++ .+.+|.. -. + .+... .| .+..+..++
T Consensus 154 ~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~ 233 (301)
T PRK07259 154 EVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV 233 (301)
T ss_pred HhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC
Confidence 54 576666654432 246688899999999876 2122210 00 0 00000 00 122333332
Q ss_pred ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| ..|||.|++.+..++.+|||+|.+|
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 356 6999999999999999999999998
No 86
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.60 E-value=0.00022 Score=79.74 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=40.4
Q ss_pred eeCcceEecCCC-CCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862 330 YQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ 376 (671)
Q Consensus 330 ~~~iPiIaa~MD-tV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~ 376 (671)
-+..|||.++|- .+++++|+.++++.||||++- -+.++|+..+.|.+
T Consensus 16 giryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ 64 (444)
T TIGR02814 16 GVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHR 64 (444)
T ss_pred CCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHH
Confidence 356799999998 799999999999999999999 57788877666544
No 87
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.58 E-value=0.0024 Score=69.21 Aligned_cols=134 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred ceEEec-CCChhhHHHHHHHHHhCCCceEEEeeccC--CCC--------hHHHHHHHHHHHh--CCCceEEEEEec-cHH
Q psy3862 107 HVAVSS-GISAKDLAGLKEILAALPEIEYICLDVAN--GYT--------QTFVDFVRRIREM--YPKHVIIAGNVV-TGE 172 (671)
Q Consensus 107 ~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a~--G~~--------~~~~~~ik~lr~~--~P~~~li~g~v~-t~e 172 (671)
|+.+++ |.+++++.++.+.++.. +++++-++... ..+ +.+.+.++.+++. .|...|+..+.. ..+
T Consensus 101 pvi~si~g~~~~~~~~~a~~~~~~-gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~ 179 (325)
T cd04739 101 PVIASLNGVSAGGWVDYARQIEEA-GADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAH 179 (325)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHH
Confidence 444443 44555565554444432 57888777642 111 2345666776653 477777776543 467
Q ss_pred HHHHHHHCCCcEEEECcCCCc--eEEE--Eeccc--C--C-----cchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862 173 MVEELILSGADVIKVGIGPGS--VCTT--RLKNK--T--S-----DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 173 ~a~~Li~AGaD~IvVdga~G~--~~~t--~v~~~--~--~-----~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG 234 (671)
.++.|.++|||.|++-..... +-.. ..... + + .+..+..+. .+| ..|||-|++.+...|.+|
T Consensus 180 ~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG 259 (325)
T cd04739 180 MAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAG 259 (325)
T ss_pred HHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcC
Confidence 888999999999988432111 1000 00000 0 0 011111111 356 699999999999999999
Q ss_pred CCEEEEc
Q psy3862 235 ADVIKVG 241 (671)
Q Consensus 235 AdgvkVG 241 (671)
||+|.||
T Consensus 260 A~~Vqv~ 266 (325)
T cd04739 260 ADVVMTT 266 (325)
T ss_pred CCeeEEe
Confidence 9999999
No 88
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.57 E-value=0.0039 Score=63.21 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=50.9
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEE
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~Iv 186 (671)
+.+.++. +.++.+++. +...+-+.. .+.+..+.++++++.||...+-+|.|.|.+++++++++|+++|+
T Consensus 16 ~~~~e~a~~~~~al~~~--Gi~~iEit~---~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 16 IDDVDDALPLAKALIEG--GLRVLEVTL---RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred cCCHHHHHHHHHHHHHc--CCCEEEEeC---CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 3444443 456667776 666554432 24667888999988899877778899999999999999999993
No 89
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.57 E-value=0.0048 Score=61.58 Aligned_cols=109 Identities=26% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
+.++.+. +.++.+++. +++.+-+...+ .+..+.++.+++.||...+-+|.+.+.++++.++++|+|+|...
T Consensus 12 ~~~~~~~~~~~~~l~~~--G~~~vev~~~~---~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p--- 83 (190)
T cd00452 12 GDDAEDALALAEALIEG--GIRAIEITLRT---PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP--- 83 (190)
T ss_pred cCCHHHHHHHHHHHHHC--CCCEEEEeCCC---hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC---
Confidence 4444443 567777777 77888777543 44777888888889976677788999999999999999999642
Q ss_pred CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
+.. ..+++... ..|+-=|+.|.+.+..++++|||-+++
T Consensus 84 ~~~-----------~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 84 GLD-----------PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKL 123 (190)
T ss_pred CCC-----------HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEE
Confidence 211 11111111 123223777999999999999999986
No 90
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.55 E-value=0.0023 Score=65.22 Aligned_cols=160 Identities=23% Similarity=0.272 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCeEEeecCCCHHHHHHhhhc---Cccc---ccce---EEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862 70 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ---NPDV---IKHV---AVSSGISAKDLAGLKEILAALPEIEYICLDVA 140 (671)
Q Consensus 70 ~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~---~p~~---~~~~---~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a 140 (671)
.++|.++.+.|+.++.-. +++.. +.+++ .|.. .+.+ .+..+ ...++++++.++ ++++++++..
T Consensus 26 ~~~a~a~~~~G~~~~~~~--~~~~i-~~i~~~~~~Pil~~~~~d~~~~~~~~~---~~~~~v~~a~~a--Gad~I~~d~~ 97 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN--GVEDI-KAIRAVVDVPIIGIIKRDYPDSEVYIT---PTLKEVDALAAA--GADIIALDAT 97 (221)
T ss_pred HHHHHHHHHCCCeEEEcC--CHHHH-HHHHHhCCCCEEEEEecCCCCCCceEC---CCHHHHHHHHHc--CCCEEEEeCC
Confidence 579999999999887432 24432 22222 2321 0000 01111 123567777777 8889888866
Q ss_pred CCC-C--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---c
Q psy3862 141 NGY-T--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---C 214 (671)
Q Consensus 141 ~G~-~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~ 214 (671)
... + +...+.++..++. +...++ ..+.+.++++.+.++|+|+|.+.. +|+...+. ....+.+..+..+. .
T Consensus 98 ~~~~p~~~~~~~~i~~~~~~-~~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~-~g~t~~~~-~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 98 LRPRPDGETLAELVKRIKEY-PGQLLM-ADCSTLEEGLAAQKLGFDFIGTTL-SGYTEETK-KPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCCCCCCCCHHHHHHHHHhC-CCCeEE-EeCCCHHHHHHHHHcCCCEEEcCC-ceeecCCC-CCCCcCHHHHHHHHHhCC
Confidence 432 2 4555666666553 444444 456788999999999999997642 22211000 01112233333332 3
Q ss_pred cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 215 IP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+| ++|||.|.+.+..++++|||++-||
T Consensus 174 iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 56 7999999999999999999999888
No 91
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.51 E-value=0.0002 Score=88.91 Aligned_cols=217 Identities=13% Similarity=0.128 Sum_probs=126.0
Q ss_pred cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-c----HHHHHHHHHcCCeEEee-cCCC
Q psy3862 17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-T----FEMAKHLAKHGLFTTIH-KYYT 90 (671)
Q Consensus 17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~----~~lA~Ala~~gglgvIh-~n~~ 90 (671)
..++++|+++.|.+...+|.++|.--..|. -++.+++|..++ + ..||.++.+.|+.--.. .+++
T Consensus 829 ~~~~lr~ll~~~~~~~~~p~~eve~v~~I~----------~rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~ 898 (1485)
T PRK11750 829 PVATLRDLLALKPADNPIPLDEVEPAEELF----------KRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGED 898 (1485)
T ss_pred CCCCHHHHhcccCCCCCCCccccccHHHHh----------cccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCC
Confidence 345899999999876666766665444454 358899999875 2 45888888887653222 2477
Q ss_pred HHHHHHh----hhc--------Ccccccc---eE--Ee----cC----CChhh-HHHHHHHHHhCCCceEEEeeccCCC-
Q psy3862 91 LEEWKAF----AVQ--------NPDVIKH---VA--VS----SG----ISAKD-LAGLKEILAALPEIEYICLDVANGY- 143 (671)
Q Consensus 91 ~Eeq~~~----i~~--------~p~~~~~---~~--v~----~G----~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~- 143 (671)
+|+.... ++. .|+.+.. +. ++ +| ++... .+.+.++....|+++.+.-...|..
T Consensus 899 p~~~~~~~~~~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiy 978 (1485)
T PRK11750 899 PARYGTEKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIY 978 (1485)
T ss_pred HHHHhcccCCeEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCC
Confidence 7764211 110 1111111 11 11 11 11111 1344455555667777665544443
Q ss_pred -ChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc-eEEEE--eccc-CCc---chhh-hh
Q psy3862 144 -TQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS-VCTTR--LKNK-TSD---FFLI-QF 211 (671)
Q Consensus 144 -~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~-~~~t~--v~~~-~~~---~~~i-~~ 211 (671)
.+++.++|.++|+.. |...++++...-..-+.-+.+||+|+|.|||.+|. ..... ++.- .|- +... +.
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~ 1058 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQA 1058 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHH
Confidence 377888899998765 55566665432233444567899999999996664 32222 1111 121 1000 11
Q ss_pred cc------c--cCCccccccHHHHHHHHHcCCCEEEEccc
Q psy3862 212 YS------C--IPQAGNVVTGEMVEELILSGADVIKVGIG 243 (671)
Q Consensus 212 i~------~--~p~aGnV~t~~~a~~li~aGAdgvkVG~~ 243 (671)
+. . +-+.|++.|+.-+.-++.+|||.+-+|-+
T Consensus 1059 L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750 1059 LVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred HHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence 11 1 12799999999999999999999877644
No 92
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.50 E-value=0.0002 Score=77.86 Aligned_cols=144 Identities=24% Similarity=0.164 Sum_probs=90.0
Q ss_pred ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCH----HHHHHHHhcC---ccc----------c---------
Q psy3862 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL----EEWKAFAVQN---PDV----------I--------- 381 (671)
Q Consensus 328 ~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~----e~~~~~v~~~---~~~----------~--------- 381 (671)
...+..|||-++|..|+++++|.+-++.||+|+|-.++-. ++|+..+++. |.. +
T Consensus 10 ~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~ 89 (336)
T COG2070 10 LLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARR 89 (336)
T ss_pred ccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccc
Confidence 3456789999999999999999999999999988865543 3444444432 310 0
Q ss_pred ----------------cceee---------------------ecccChhhHHHHHHcCCcEEEEccc-cccccc----cc
Q psy3862 382 ----------------KHVAD---------------------GGCTSPGDVAKAMGAGADFVMLGGM-FAGHDQ----SG 419 (671)
Q Consensus 382 ----------------~~v~~---------------------~~~~~~~~~~~l~~aG~d~i~id~~-a~gh~~----~~ 419 (671)
+.+.- ...++.....+..++|+|.++.+|. +-||.- ..
T Consensus 90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~ 169 (336)
T COG2070 90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEV 169 (336)
T ss_pred cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCc
Confidence 00000 1111233344446789999999987 568843 22
Q ss_pred --cccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCC
Q psy3862 420 --GELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG 479 (671)
Q Consensus 420 --~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt 479 (671)
..++.++...|. ++ .+|.+|-+.+++... ++..|||+|.+|..+-.+.+|.+
T Consensus 170 ~t~~Lv~ev~~~~~-------~i-PViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a 224 (336)
T COG2070 170 STFALVPEVVDAVD-------GI-PVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADA 224 (336)
T ss_pred cHHHHHHHHHHHhc-------CC-CEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCC
Confidence 334333332211 12 344444467776655 78999999999976666566655
No 93
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.48 E-value=0.00038 Score=74.96 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=38.4
Q ss_pred CcceEecCCCCCCC-HHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862 332 GVPIIAANMDTVGT-FEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ 376 (671)
Q Consensus 332 ~iPiIaa~MDtV~~-~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~ 376 (671)
..|||.++|-++.+ +++|.+.++.||||+|. -++++|+..+++++
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~ 48 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEE 48 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHH
Confidence 36999999999997 89999999999999999 56688886555543
No 94
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.47 E-value=0.00076 Score=69.62 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCeEEeecCCCHHHHHHhhh-cCcccccceEEecCC-ChhhHHHHHHHHHhCCCceEEEeecc--C-----
Q psy3862 71 EMAKHLAKHGLFTTIHKYYTLEEWKAFAV-QNPDVIKHVAVSSGI-SAKDLAGLKEILAALPEIEYICLDVA--N----- 141 (671)
Q Consensus 71 ~lA~Ala~~gglgvIh~n~~~Eeq~~~i~-~~p~~~~~~~v~~G~-~~~d~~rl~~l~~a~~~~d~Ivld~a--~----- 141 (671)
+-+..+.+.|.=-++.....+++|.+... +.. ...++.++++. +++++.++.+++.. ..+.+-++.. +
T Consensus 33 ~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~ 109 (231)
T TIGR00736 33 KASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFVDLEEAYDVLLTIAE--HADIIEINAHCRQPEITE 109 (231)
T ss_pred HHHHHHHHcCCcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecCCHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcC
Confidence 34445566665545433223555543332 111 22356666664 77777777666665 5667666532 1
Q ss_pred -C-------CChHHHHHHHHHHHh-CCCceEEEEEe---ccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhh
Q psy3862 142 -G-------YTQTFVDFVRRIREM-YPKHVIIAGNV---VTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLI 209 (671)
Q Consensus 142 -G-------~~~~~~~~ik~lr~~-~P~~~li~g~v---~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i 209 (671)
| +++.+.+.++.+++. .|...|+-.+. .+.+.++.|.++|+|.|.||..-... ...++..+
T Consensus 110 ~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-------~~a~~~~I 182 (231)
T TIGR00736 110 IGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-------PYADMDLL 182 (231)
T ss_pred CCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-------chhhHHHH
Confidence 1 234455566666532 46666665433 35688999999999999997521110 00112222
Q ss_pred hhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 210 QFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 210 ~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..++ .+| .-|+|-|.+.++..+++|||+|.||
T Consensus 183 ~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 183 KILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred HHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 2221 145 5899999999999999999999998
No 95
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.39 E-value=0.0011 Score=72.03 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=101.9
Q ss_pred eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEe-ecCC------------------------------
Q psy3862 41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI-HKYY------------------------------ 89 (671)
Q Consensus 41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvI-h~n~------------------------------ 89 (671)
|++++ .+++|+-||+.++- .....+....+... |+|.+ =+..
T Consensus 46 L~~~~-----~Gl~l~NPi~lAsG-~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTV-----LGLKFPNPLGLAAG-FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEE-----CCEECCCCcEeCCc-cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 88888 48999999988655 33344455545555 44432 1111
Q ss_pred -CHHHHHHhhhcCcccccceEEecCCC--------hhhHHHHHHHHHhCCCceEEEeecc--CC-------CChHHHHHH
Q psy3862 90 -TLEEWKAFAVQNPDVIKHVAVSSGIS--------AKDLAGLKEILAALPEIEYICLDVA--NG-------YTQTFVDFV 151 (671)
Q Consensus 90 -~~Eeq~~~i~~~p~~~~~~~v~~G~~--------~~d~~rl~~l~~a~~~~d~Ivld~a--~G-------~~~~~~~~i 151 (671)
.+|.+.+.+++.+ ...++.++++.+ .+|+.+..+.++. .+|++.+|.+ |. .++.+.+.+
T Consensus 119 ~G~~~~l~~i~~~~-~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~~~~~~~~~~~~~~i~ 195 (335)
T TIGR01036 119 HGADVLVERLKRAR-YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTPGLRDLQYKAELRDLL 195 (335)
T ss_pred hhHHHHHHHHhhcc-CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCCCcccccCHHHHHHHH
Confidence 1233333332211 112444554422 2344333333332 4678777643 21 123344444
Q ss_pred HHHHHh---------CCCceEEEEEec---cHHHHHHHHHCCCcEEEECc---------------CCCceEEEEecccCC
Q psy3862 152 RRIREM---------YPKHVIIAGNVV---TGEMVEELILSGADVIKVGI---------------GPGSVCTTRLKNKTS 204 (671)
Q Consensus 152 k~lr~~---------~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdg---------------a~G~~~~t~v~~~~~ 204 (671)
+.+++. .|...|+..+.. ..+-++++.++|+|.|++-- ..|..+-..++..
T Consensus 196 ~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~-- 273 (335)
T TIGR01036 196 TAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDK-- 273 (335)
T ss_pred HHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHH--
Confidence 444321 577777877764 45778889999999998622 0110000000000
Q ss_pred cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+..+..+. .+| .+|||.|++.+..+|.+|||.|.||
T Consensus 274 al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 274 STEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 111222221 245 5999999999999999999999988
No 96
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.38 E-value=0.00074 Score=67.22 Aligned_cols=115 Identities=24% Similarity=0.355 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCceEEEeeccCC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862 119 LAGLKEILAALPEIEYICLDVANG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t 197 (671)
++.+++++++ ++++|.+|.-.- -+..+.++++++|+.| .++.+-+.|.|.+..+.++|+|+|----++ . +.
T Consensus 54 ~~ev~~l~~a--GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D~I~TTLsG-Y--T~ 125 (192)
T PF04131_consen 54 LKEVDALAEA--GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGFDIIGTTLSG-Y--TP 125 (192)
T ss_dssp HHHHHHHHHC--T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-SEEE-TTTT-S--ST
T ss_pred HHHHHHHHHc--CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCCEEEccccc-C--CC
Confidence 6788999998 889999985432 2466788888888888 667778899999999999999999322111 1 00
Q ss_pred EecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..+...|++.++..+. .+| +=|++-|.++++.++++||.+|=||
T Consensus 126 ~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 126 YTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp TSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 1122346676666553 355 6899999999999999999999999
No 97
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.37 E-value=0.003 Score=67.17 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=102.3
Q ss_pred CCcccCceEEecC-CCccccHHHHHHHHHcCCeEEeec-CCC-----------------------------HHHHHHhhh
Q psy3862 51 GKTYQGVPIIAAN-MDTVGTFEMAKHLAKHGLFTTIHK-YYT-----------------------------LEEWKAFAV 99 (671)
Q Consensus 51 ~~~~l~~Piv~a~-M~~vt~~~lA~Ala~~gglgvIh~-n~~-----------------------------~Eeq~~~i~ 99 (671)
.+++|+-||+.++ +.+ +...+.. +...||+|.+-. ..+ ++++.+.++
T Consensus 5 ~G~~~~nP~~~aag~~~-~~~~~~~-~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~ 82 (296)
T cd04740 5 AGLRLKNPVILASGTFG-FGEELSR-VADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred CCEEcCCCCEECCCCCC-CHHHHHH-HHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHH
Confidence 4788899998875 433 4344444 667776765321 111 233333332
Q ss_pred cC-cccccceEEec-CCChhhHHHHHHHHHhCCCceEEEeecc--C---------CCChHHHHHHHHHHHh--CCCceEE
Q psy3862 100 QN-PDVIKHVAVSS-GISAKDLAGLKEILAALPEIEYICLDVA--N---------GYTQTFVDFVRRIREM--YPKHVII 164 (671)
Q Consensus 100 ~~-p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~---------G~~~~~~~~ik~lr~~--~P~~~li 164 (671)
+. .....|+.+++ |..++++.++.+.++.. +.|.+-++.. + +.++.+.+.++.+++. .|...++
T Consensus 83 ~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~-G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADA-GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred HHhhcCCCcEEEEEecCCHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 11 11123455544 45566665554444432 5677766432 1 1234455666776654 5766666
Q ss_pred EEEec-cHHHHHHHHHCCCcEEEECc-CCCc---eEE--E-------Eec-cc-CC-cchhhhhcc---ccC--Cccccc
Q psy3862 165 AGNVV-TGEMVEELILSGADVIKVGI-GPGS---VCT--T-------RLK-NK-TS-DFFLIQFYS---CIP--QAGNVV 222 (671)
Q Consensus 165 ~g~v~-t~e~a~~Li~AGaD~IvVdg-a~G~---~~~--t-------~v~-~~-~~-~~~~i~~i~---~~p--~aGnV~ 222 (671)
..+.. ..+.++.|.++|+|.|++-. ..|. ..+ . .++ +- .| .+..+..+. .+| ..|||.
T Consensus 162 ~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~ 241 (296)
T cd04740 162 TPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241 (296)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence 54432 34668889999999987632 1111 000 0 000 00 00 122222221 256 689999
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|++.+..++++|||+|.||
T Consensus 242 ~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 242 SGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999
No 98
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.36 E-value=0.00091 Score=72.93 Aligned_cols=195 Identities=15% Similarity=0.093 Sum_probs=105.4
Q ss_pred CcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE-eecC---------------------------
Q psy3862 37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKY--------------------------- 88 (671)
Q Consensus 37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n--------------------------- 88 (671)
.+.+|++++ .+++|+-||..++- .....+....+...| +|. .=+.
T Consensus 45 ~~~~L~~~~-----~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~ 117 (344)
T PRK05286 45 TDPRLPVTV-----MGLTFPNPVGLAAG-FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRM 117 (344)
T ss_pred CCCCCceEE-----CCEECCCCCEECCC-CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCC
Confidence 577789998 58999999988764 333445445455443 322 1111
Q ss_pred ----CCHHHHHHhhhcCcccccceEEecCC--------ChhhHHHHHHHHHhCCCceEEEeeccCC---------CChHH
Q psy3862 89 ----YTLEEWKAFAVQNPDVIKHVAVSSGI--------SAKDLAGLKEILAALPEIEYICLDVANG---------YTQTF 147 (671)
Q Consensus 89 ----~~~Eeq~~~i~~~p~~~~~~~v~~G~--------~~~d~~rl~~l~~a~~~~d~Ivld~a~G---------~~~~~ 147 (671)
..+|.+.+.+++.. ..-|+.++++- ..+|+.++.+.++. .+|++.++..-- +...+
T Consensus 118 gl~n~g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~ad~lelN~scP~~~g~~~~~~~~~~ 194 (344)
T PRK05286 118 GFNNDGADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--YADYFTVNISSPNTPGLRDLQYGEAL 194 (344)
T ss_pred CCCCHhHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--hCCEEEEEccCCCCCCcccccCHHHH
Confidence 11233333332211 11245555442 22344333333332 467777764311 12344
Q ss_pred HHHHHHHHH--h-----CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCceE-EEE--eccc---C--C-----
Q psy3862 148 VDFVRRIRE--M-----YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGSVC-TTR--LKNK---T--S----- 204 (671)
Q Consensus 148 ~~~ik~lr~--~-----~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~~~-~t~--v~~~---~--~----- 204 (671)
.+.++.+++ . .|...++..+.. ..+.++.|.++|||.|++-..--... +.. .... + +
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 455555543 2 677777765543 35778889999999998854210000 000 0000 0 0
Q ss_pred cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+..+..+. .+| ..|||-|++.+..++.+|||+|.||
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 111222221 245 6999999999999999999999888
No 99
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.30 E-value=0.0035 Score=67.59 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=104.2
Q ss_pred CcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC-CCHHHH-------HHhhhcCcccccceEEe-cCCChhhHHHH
Q psy3862 52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY-YTLEEW-------KAFAVQNPDVIKHVAVS-SGISAKDLAGL 122 (671)
Q Consensus 52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n-~~~Eeq-------~~~i~~~p~~~~~~~v~-~G~~~~d~~rl 122 (671)
++.++.|++.+||.++|+..+...+.+.| .+....- .+.+.. .......+ ...|+.+. .|.+++++.++
T Consensus 3 ~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~-~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAE-DETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred CccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCC-ccceEEEEEeCCCHHHHHHH
Confidence 45678899999999999988888766666 4544321 111111 11111111 12344443 34666777655
Q ss_pred HHHHHhCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEE-EEe----ccHHHHHHHHHC
Q psy3862 123 KEILAALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIA-GNV----VTGEMVEELILS 180 (671)
Q Consensus 123 ~~l~~a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~-g~v----~t~e~a~~Li~A 180 (671)
.+.+.. .+.|.|-++..- | .++-..+.++.+++. +|...++- |.. .+.+.++.|.++
T Consensus 81 a~~~~~-~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 81 AKINEE-LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHHHh-CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 544432 156666554321 1 123344556666554 56555553 211 235778889999
Q ss_pred CCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-HcCCCEEEEc
Q psy3862 181 GADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGADVIKVG 241 (671)
Q Consensus 181 GaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAdgvkVG 241 (671)
|+|.|.+.+ ........ ...++..+..++ .+| ..|+|.|.+.+..++ ..|||+|.+|
T Consensus 160 G~d~i~vh~---r~~~~~~~-~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 160 GAQAVTLHG---RTRAQGYS-GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCCEEEEEc---ccccccCC-CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 999998843 11000000 001233333332 245 699999999999999 6899999998
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.29 E-value=0.017 Score=58.97 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCceEE--EeeccCCCChHHHHHHHHHHHhCC---CceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862 121 GLKEILAALPEIEYI--CLDVANGYTQTFVDFVRRIREMYP---KHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195 (671)
Q Consensus 121 rl~~l~~a~~~~d~I--vld~a~G~~~~~~~~ik~lr~~~P---~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~ 195 (671)
.++.+++. +...+ +++ .....+.++.+++.|| ...+=+|.|.|.++++.++++|+++|+ +++..
T Consensus 30 ~~~al~~~--Gi~~iEit~~-----~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv---sP~~~- 98 (213)
T PRK06552 30 ISLAVIKG--GIKAIEVTYT-----NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV---SPSFN- 98 (213)
T ss_pred HHHHHHHC--CCCEEEEECC-----CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE---CCCCC-
Confidence 34555655 44443 333 3557788888888884 445556688999999999999999996 34421
Q ss_pred EEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862 196 TTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 196 ~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
-.+++... .+|..=|+.|...+..++++|||-||+
T Consensus 99 ----------~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 ----------RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred ----------HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE
Confidence 12333332 355566899999999999999999997
No 101
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.29 E-value=0.0069 Score=65.74 Aligned_cols=134 Identities=21% Similarity=0.206 Sum_probs=76.8
Q ss_pred ceEEec-CCChhhHHHHHHHHHhCCCceEEEeeccC--CC-------C-hHHHHHHHHHHHh--CCCceEEEEEe-ccHH
Q psy3862 107 HVAVSS-GISAKDLAGLKEILAALPEIEYICLDVAN--GY-------T-QTFVDFVRRIREM--YPKHVIIAGNV-VTGE 172 (671)
Q Consensus 107 ~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a~--G~-------~-~~~~~~ik~lr~~--~P~~~li~g~v-~t~e 172 (671)
|+.+++ +.+.+++.++...++.. +++++.++... .. . ..+.+.++.+++. .|...++..+. ...+
T Consensus 103 pvi~sI~g~~~~e~~~~a~~~~~a-gad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~ 181 (334)
T PRK07565 103 PVIASLNGSSAGGWVDYARQIEQA-GADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLAN 181 (334)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHc-CCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHH
Confidence 444444 34455554443333332 67888776532 11 1 2355667777654 47666776654 3467
Q ss_pred HHHHHHHCCCcEEEECcCC-C-ceEEEEe----cccCC-------cchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862 173 MVEELILSGADVIKVGIGP-G-SVCTTRL----KNKTS-------DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 173 ~a~~Li~AGaD~IvVdga~-G-~~~~t~v----~~~~~-------~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG 234 (671)
.++.|.++|+|.|++-... + ....... ...++ .+..+..+. .+| ..|||-|++.+...|.+|
T Consensus 182 ~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aG 261 (334)
T PRK07565 182 MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAG 261 (334)
T ss_pred HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 8888999999999873211 0 0000000 00000 011111111 256 699999999999999999
Q ss_pred CCEEEEc
Q psy3862 235 ADVIKVG 241 (671)
Q Consensus 235 AdgvkVG 241 (671)
||+|.||
T Consensus 262 A~~V~v~ 268 (334)
T PRK07565 262 ADVVMIA 268 (334)
T ss_pred CCceeee
Confidence 9999998
No 102
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.20 E-value=0.0027 Score=67.85 Aligned_cols=128 Identities=18% Similarity=0.257 Sum_probs=74.3
Q ss_pred CC-ChhhHHHHHHHHHhCCCceEEEeecc--CC------------CChHHHHHHHHHHHh--CCCceEEEEEe-ccHHHH
Q psy3862 113 GI-SAKDLAGLKEILAALPEIEYICLDVA--NG------------YTQTFVDFVRRIREM--YPKHVIIAGNV-VTGEMV 174 (671)
Q Consensus 113 G~-~~~d~~rl~~l~~a~~~~d~Ivld~a--~G------------~~~~~~~~ik~lr~~--~P~~~li~g~v-~t~e~a 174 (671)
|- +++++.++.+.++. .+++++-+|.. +. .++.+.+.++.+++. .|...|+..+. ...+.+
T Consensus 108 G~~~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a 186 (299)
T cd02940 108 CEYNKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIA 186 (299)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHH
Confidence 54 66777665555543 25677766543 11 124455666666653 47666766443 345788
Q ss_pred HHHHHCCCcEEEE----------Cc--------CCCceEEEEec--ccCC-cchhhhhcc-----ccC--CccccccHHH
Q psy3862 175 EELILSGADVIKV----------GI--------GPGSVCTTRLK--NKTS-DFFLIQFYS-----CIP--QAGNVVTGEM 226 (671)
Q Consensus 175 ~~Li~AGaD~IvV----------dg--------a~G~~~~t~v~--~~~~-~~~~i~~i~-----~~p--~aGnV~t~~~ 226 (671)
+.+.++|||.|++ |. -||......++ ..+| .+..+..+. .+| ..|||-+++.
T Consensus 187 ~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~d 266 (299)
T cd02940 187 RAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWED 266 (299)
T ss_pred HHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHH
Confidence 8999999999973 10 01100000000 0000 112222221 245 6999999999
Q ss_pred HHHHHHcCCCEEEEc
Q psy3862 227 VEELILSGADVIKVG 241 (671)
Q Consensus 227 a~~li~aGAdgvkVG 241 (671)
+...+.+|||+|.||
T Consensus 267 a~~~l~aGA~~V~i~ 281 (299)
T cd02940 267 AAEFLLLGASVVQVC 281 (299)
T ss_pred HHHHHHcCCChheEc
Confidence 999999999999998
No 103
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.18 E-value=0.0023 Score=71.03 Aligned_cols=77 Identities=17% Similarity=0.015 Sum_probs=50.9
Q ss_pred CCCceeeeecCCCc---cCCCCcccceeeeeeccCCceeeCcceEecCCCCCCC-----HHHHHHHHHcCCeEEEc-cCC
Q psy3862 295 LDFKDVMLRPKRST---LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT-----FEMAKHLAKHGLFTTIH-KYY 365 (671)
Q Consensus 295 l~fdDVll~P~rst---~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~-----~~mA~~la~~Gglgvih-r~~ 365 (671)
.+.+|+++.|.... ..+..+++.+..+..+-.+.+.+..||+-|+|-.... .++|.+.++.|+++.+. -.+
T Consensus 37 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg~ 116 (392)
T cd02808 37 GTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGE 116 (392)
T ss_pred CChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCCCC
Confidence 36677777665322 2233344433333333445677889999999975543 68999999999999998 455
Q ss_pred CHHHHH
Q psy3862 366 TLEEWK 371 (671)
Q Consensus 366 ~~e~~~ 371 (671)
++|+..
T Consensus 117 ~~~~~~ 122 (392)
T cd02808 117 LPEERE 122 (392)
T ss_pred CHHHHh
Confidence 666554
No 104
>KOG0538|consensus
Probab=97.18 E-value=0.01 Score=62.81 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=115.4
Q ss_pred CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCc-----c-ccHHHHHHHHHcCCeEEeec--CC
Q psy3862 18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT-----V-GTFEMAKHLAKHGLFTTIHK--YY 89 (671)
Q Consensus 18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~-----v-t~~~lA~Ala~~gglgvIh~--n~ 89 (671)
-..|..++|.|+.+-.. +.+|++|++ -+.++..||.++|... . ++...|.|.+++|-.-++-. .+
T Consensus 37 ~~AF~ri~~rPr~L~dV--s~iD~sTtv-----lG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~ 109 (363)
T KOG0538|consen 37 INAFRRILFRPRILRDV--SKIDTSTTV-----LGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATC 109 (363)
T ss_pred HHHHHhhhccchhheec--cccccccee-----ccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcC
Confidence 35688999999998764 699999999 4888999999996543 2 34557777777766555543 48
Q ss_pred CHHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceE--EEeecc--------------------------
Q psy3862 90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEY--ICLDVA-------------------------- 140 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~--Ivld~a-------------------------- 140 (671)
|+|+..+.- |..+.=+++-+- +.+++ +.+..-.+. .+..+ +++|..
T Consensus 110 S~EdI~~aa---p~~~rwfQLYvy-kdr~It~~Lv~raEk-~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~ 184 (363)
T KOG0538|consen 110 SVEDIASAA---PPGIRWFQLYVY-KDRDITEQLVKRAEK-AGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEG 184 (363)
T ss_pred CHHHHHhhC---CCCcEEEEEEec-CchHHHHHHHHHHHH-cCceEEEEEeccccccCchhhhhhcccCCcccccccccc
Confidence 888754332 221111111000 00000 000000000 01111 111100
Q ss_pred -----------CCC----------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 141 -----------NGY----------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 141 -----------~G~----------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
.|. +-.|. -+++++.. -..+++.-.|-+.|+|+.++++|++-|++.--+|.-.
T Consensus 185 ~~~~~v~~~~~sg~~~~~~~~id~Sl~W~-Di~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQl---- 258 (363)
T KOG0538|consen 185 LKLTEVEEAGDSGLAAYVSSQIDPSLSWK-DIKWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQL---- 258 (363)
T ss_pred cccccCCcccchhhhhhhhcCCCCCCChh-hhHHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCcccc----
Confidence 000 01111 23444432 2344666677899999999999999998844333210
Q ss_pred cccCC-cchhhhhc----c-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 200 KNKTS-DFFLIQFY----S-CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 200 ~~~~~-~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+..| ++..++.+ . .+| .-|||-++..+.-++++||-+|-||
T Consensus 259 -D~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 259 -DYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG 307 (363)
T ss_pred -CcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence 0011 22222222 1 255 6999999999999999999999887
No 105
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.13 E-value=0.0053 Score=65.58 Aligned_cols=189 Identities=18% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCcccCceEEecCCCccccHHHHHHHHHcCCeEEe-ecC-----------------------------CCHHHHHHhhhc
Q psy3862 51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI-HKY-----------------------------YTLEEWKAFAVQ 100 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvI-h~n-----------------------------~~~Eeq~~~i~~ 100 (671)
.+++|+-||+.++-.+....+....+... |+|.+ =+. ..+|.+.+.+++
T Consensus 4 ~Gl~l~nPi~~Asg~~~~~~e~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~ 82 (294)
T cd04741 4 PGLTISPPLMNAAGPWCTTLEDLLELAAS-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRT 82 (294)
T ss_pred CCeeCCCCCEECCCCCCCCHHHHHHHHHc-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHH
Confidence 37888999999987765555555545553 45432 111 223444444432
Q ss_pred C----cccccceEEecCCChhhHHHHHHHHHhC--CCceEEEeecc--CC--------CChHHHHHHHHHHHh--CCCce
Q psy3862 101 N----PDVIKHVAVSSGISAKDLAGLKEILAAL--PEIEYICLDVA--NG--------YTQTFVDFVRRIREM--YPKHV 162 (671)
Q Consensus 101 ~----p~~~~~~~v~~G~~~~d~~rl~~l~~a~--~~~d~Ivld~a--~G--------~~~~~~~~ik~lr~~--~P~~~ 162 (671)
. +....|+.+++.-.++|+.+..+.+... +++|++-+|.. |. .++.+.+.++.+++. .|...
T Consensus 83 ~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~v 162 (294)
T cd04741 83 ISDGLPGSAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGV 162 (294)
T ss_pred HhhhccccCCeEEEECCCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1122455555443366664433333321 25678777654 21 235566667776654 47666
Q ss_pred EEEEEec---cHHHHHHHHHC--CCcEEEE----------CcCCCceEEEEecccC---------C-cchhhhhc----c
Q psy3862 163 IIAGNVV---TGEMVEELILS--GADVIKV----------GIGPGSVCTTRLKNKT---------S-DFFLIQFY----S 213 (671)
Q Consensus 163 li~g~v~---t~e~a~~Li~A--GaD~IvV----------dga~G~~~~t~v~~~~---------~-~~~~i~~i----~ 213 (671)
|+.-+.. ..+.++.|.++ |+|.|++ |...+..... -...+ + .+..+..+ .
T Consensus 163 Kl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~-~~~~~gG~SG~~i~~~al~~v~~~~~~~~ 241 (294)
T cd04741 163 KTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLK-PKTGFGGLAGAYLHPLALGNVRTFRRLLP 241 (294)
T ss_pred EeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccC-CCCCCCCcCchhhHHHHHHHHHHHHHhcC
Confidence 7765432 24566777778 9998884 3211100000 00000 0 01111111 1
Q ss_pred -ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 -CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 -~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| ..|||.|++.+...+.+|||+|.||
T Consensus 242 ~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 242 SEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 256 6999999999999999999999998
No 106
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.06 E-value=0.0051 Score=68.76 Aligned_cols=124 Identities=18% Similarity=0.273 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHhCCCceEEEeeccC--------------CCChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHH
Q psy3862 115 SAKDLAGLKEILAALPEIEYICLDVAN--------------GYTQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEEL 177 (671)
Q Consensus 115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~--------------G~~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~L 177 (671)
+++++..+...++. .+++++-+|..- .+++.+.+.++.+++. .|...|+..+.. ..+.++.|
T Consensus 111 ~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~ 189 (420)
T PRK08318 111 NEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAA 189 (420)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHH
Confidence 45666555445443 257787776431 0124455566666553 477777776543 35788889
Q ss_pred HHCCCcEEEE----------CcC--------CCc-----eEEEEecccCCcchhhhhc-c-----ccC--CccccccHHH
Q psy3862 178 ILSGADVIKV----------GIG--------PGS-----VCTTRLKNKTSDFFLIQFY-S-----CIP--QAGNVVTGEM 226 (671)
Q Consensus 178 i~AGaD~IvV----------dga--------~G~-----~~~t~v~~~~~~~~~i~~i-~-----~~p--~aGnV~t~~~ 226 (671)
.++|||.|++ |.- ||. ..-+.+++. ++..+..+ . .+| ..|||.|++.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~--~l~~v~~~~~~~~~~~ipIig~GGI~s~~d 267 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPI--ALNMVAEIARDPETRGLPISGIGGIETWRD 267 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHH--HHHHHHHHHhccccCCCCEEeecCcCCHHH
Confidence 9999999982 210 110 000001000 11111111 1 245 5999999999
Q ss_pred HHHHHHcCCCEEEEc
Q psy3862 227 VEELILSGADVIKVG 241 (671)
Q Consensus 227 a~~li~aGAdgvkVG 241 (671)
+.+.|.+|||+|+||
T Consensus 268 a~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 268 AAEFILLGAGTVQVC 282 (420)
T ss_pred HHHHHHhCCChheee
Confidence 999999999999999
No 107
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.06 E-value=0.0042 Score=66.83 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=104.9
Q ss_pred eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--ee-------c---------------------CC
Q psy3862 40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IH-------K---------------------YY 89 (671)
Q Consensus 40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih-------~---------------------n~ 89 (671)
||++++ .+++|+-||+.++-......+....+...| +|. +. . |.
T Consensus 1 dL~~~~-----~Gl~l~NPv~~AsG~~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQI-----AGFKFDNCLMNAAGVYCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEE-----CCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 577888 489999999998776654444444455544 432 11 1 12
Q ss_pred CHHHHHHhhhcCccc--ccceEEe-cCCChhhHHHHHHHHHhCCCceEEEeecc--C--C------CChHHHHHHHHHHH
Q psy3862 90 TLEEWKAFAVQNPDV--IKHVAVS-SGISAKDLAGLKEILAALPEIEYICLDVA--N--G------YTQTFVDFVRRIRE 156 (671)
Q Consensus 90 ~~Eeq~~~i~~~p~~--~~~~~v~-~G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~--G------~~~~~~~~ik~lr~ 156 (671)
.+|.+.+.+++.... ..|+.++ .|.+++++.++.+.++..+.+|++-++.+ | + .++.+.+.++.+++
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~ 154 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFT 154 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 234444443221111 1344333 46777777665555554333788877665 2 1 12445566666665
Q ss_pred h--CCCceEEEEEeccHHHHHHHH---HCCCcEEE----------ECcCCCceEE-----------EEecccCCcchhhh
Q psy3862 157 M--YPKHVIIAGNVVTGEMVEELI---LSGADVIK----------VGIGPGSVCT-----------TRLKNKTSDFFLIQ 210 (671)
Q Consensus 157 ~--~P~~~li~g~v~t~e~a~~Li---~AGaD~Iv----------Vdga~G~~~~-----------t~v~~~~~~~~~i~ 210 (671)
. .|...|+..+....+-++.+. +.|+|.|. +|.-++.... ..+++. .+..+-
T Consensus 155 ~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~--al~~v~ 232 (310)
T PRK02506 155 YFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPT--ALANVR 232 (310)
T ss_pred hcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHH--HHHHHH
Confidence 3 477677777664444444433 44666532 2321111000 001100 011111
Q ss_pred hc-c----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 211 FY-S----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 211 ~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+ + .+| ..|||.|++.+...|.+||+.|+|+
T Consensus 233 ~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ 270 (310)
T PRK02506 233 AFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVG 270 (310)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhh
Confidence 11 1 245 6999999999999999999999988
No 108
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.04 E-value=0.023 Score=63.01 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=115.5
Q ss_pred CCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeE-EeecCC-------------------------
Q psy3862 36 RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFT-TIHKYY------------------------- 89 (671)
Q Consensus 36 ~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglg-vIh~n~------------------------- 89 (671)
.+-.||++++ .+++|+-|++.++-......++...+..+ |.| ++=+..
T Consensus 6 ~~~~dLst~~-----~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTV-----NGLKMPNPFVIGSGPPGTNYTVMKRAFDE-GWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEE-----CCEEcCCCcEeCCccCCCCHHHHHHHHhc-CCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 3678899999 48999999999977776555553333333 332 221111
Q ss_pred ----------------CHHHHHHhhhcCcc-c-ccceEEec-C-CChhhHHHHHHHHHhCCCceEEEeecc--CCC----
Q psy3862 90 ----------------TLEEWKAFAVQNPD-V-IKHVAVSS-G-ISAKDLAGLKEILAALPEIEYICLDVA--NGY---- 143 (671)
Q Consensus 90 ----------------~~Eeq~~~i~~~p~-~-~~~~~v~~-G-~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G~---- 143 (671)
++|.+.+++.+... . ..|+-+++ + .+++++.++.+.++. .++|++-++.+ |+.
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~ 158 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEE-TGVDALEINFSCPHGMPERK 158 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCc
Confidence 24444444322111 1 12455555 3 677888776666664 36788887764 321
Q ss_pred --------ChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHHHHCCCcEEEECc--CCCceE--EE-E--e----cc
Q psy3862 144 --------TQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEELILSGADVIKVGI--GPGSVC--TT-R--L----KN 201 (671)
Q Consensus 144 --------~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~Li~AGaD~IvVdg--a~G~~~--~t-~--v----~~ 201 (671)
++.+.+.++.+++. .|...|+..++. ..+-++++.++|||.|++=- .++-.. .+ + . ..
T Consensus 159 ~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~ 238 (385)
T PLN02495 159 MGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYS 238 (385)
T ss_pred cchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCC
Confidence 12233334555542 587788887764 35778889999999997632 111100 00 0 0 00
Q ss_pred cC-----C---cchh------hhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 202 KT-----S---DFFL------IQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 202 ~~-----~---~~~~------i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.. + ++.+ .+.+. .+| ..|||.|++.+...|.|||+.|+|+
T Consensus 239 ~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~ 299 (385)
T PLN02495 239 TPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVC 299 (385)
T ss_pred CCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEe
Confidence 00 1 1111 11111 145 5999999999999999999999998
No 109
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.01 E-value=0.0076 Score=61.32 Aligned_cols=117 Identities=26% Similarity=0.411 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCC-C--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGY-T--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~-~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~ 195 (671)
.+.++.+.++ +++++.++..... + ....+.++.+++.+ ...+++ .+.|.+.+..+.++|+|++.+.. +|...
T Consensus 82 ~~~~~~a~~a--Gad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~-~g~t~ 156 (219)
T cd04729 82 IEEVDALAAA--GADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTL-SGYTE 156 (219)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccC-ccccc
Confidence 4567777777 7888888754321 2 24556666666555 333333 56788899999999999996532 22110
Q ss_pred EEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 196 TTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 196 ~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.. .....+.+..+..+. .+| ++|||.|.+.+..++++||||+-||
T Consensus 157 ~~-~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 157 ET-AKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred cc-cCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 00 001112333333332 356 7999999999999999999999998
No 110
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0031 Score=71.01 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=103.0
Q ss_pred CCcccCceEEecCCCccc-c----HHHHHHHHHcCCeEEee-cCCCHHHHH---HhhhcCcccccceEE-----------
Q psy3862 51 GKTYQGVPIIAANMDTVG-T----FEMAKHLAKHGLFTTIH-KYYTLEEWK---AFAVQNPDVIKHVAV----------- 110 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~vt-~----~~lA~Ala~~gglgvIh-~n~~~Eeq~---~~i~~~p~~~~~~~v----------- 110 (671)
....+..|+.+++|.+.+ + ..+|+++.+.|+.-=.. .++++++.. ..|++. ....|++
T Consensus 161 p~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~~~~s~I~Qv--aSGRFGV~~~yL~~a~~i 238 (485)
T COG0069 161 PVLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYEDGRSAIKQV--ASGRFGVTPEYLANADAI 238 (485)
T ss_pred ccceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhccccceEEEe--ccccCccCHHHhCccceE
Confidence 357888999999999874 2 45888888887542111 236665531 011100 0111111
Q ss_pred ----ecCCCh--------hh-HHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCC---CceEEEEEeccHH
Q psy3862 111 ----SSGISA--------KD-LAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYP---KHVIIAGNVVTGE 172 (671)
Q Consensus 111 ----~~G~~~--------~d-~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P---~~~li~g~v~t~e 172 (671)
+-|-.| .. .+.+.++....|+++.|.-..-|.. .+++..+|++||+..| ...++++......
T Consensus 239 eIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~ 318 (485)
T COG0069 239 EIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGT 318 (485)
T ss_pred EEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHH
Confidence 111111 00 1223233333456655543333322 4778888999987643 3445555333222
Q ss_pred HHHHHHHCCCcEEEECcCCCc-eEEEE--eccc-CCcchhhhhcc---------c---cCCccccccHHHHHHHHHcCCC
Q psy3862 173 MVEELILSGADVIKVGIGPGS-VCTTR--LKNK-TSDFFLIQFYS---------C---IPQAGNVVTGEMVEELILSGAD 236 (671)
Q Consensus 173 ~a~~Li~AGaD~IvVdga~G~-~~~t~--v~~~-~~~~~~i~~i~---------~---~p~aGnV~t~~~a~~li~aGAd 236 (671)
-+.-..+|+||+|+|||.+|. ..+.. ++.- .|-..-+.... + +-++|++.|+..+.-++.+|||
T Consensus 319 iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd 398 (485)
T COG0069 319 IAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGAD 398 (485)
T ss_pred HHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcc
Confidence 222277899999999996654 33322 1111 12111111110 0 1279999999999999999999
Q ss_pred EEEEc
Q psy3862 237 VIKVG 241 (671)
Q Consensus 237 gvkVG 241 (671)
.+.+|
T Consensus 399 ~v~~g 403 (485)
T COG0069 399 AVGFG 403 (485)
T ss_pred hhhhc
Confidence 99887
No 111
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.75 E-value=0.0057 Score=62.12 Aligned_cols=69 Identities=28% Similarity=0.298 Sum_probs=42.3
Q ss_pred ccChhhHHHHHHcCCcEEEEccccccccccccccccccccccc-cccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862 389 CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFP-LVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 389 ~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
..+++++....++|+|++.+- ... ....+.++.++..+| .+ +-+-+|| +...++...+.+|||+|-+
T Consensus 111 ~~t~~E~~~A~~~Gad~vk~F---pa~-~~G~~~l~~l~~~~~~~i-------pvvaiGG-I~~~n~~~~~~aGa~~vav 178 (206)
T PRK09140 111 VATPTEAFAALRAGAQALKLF---PAS-QLGPAGIKALRAVLPPDV-------PVFAVGG-VTPENLAPYLAAGAAGFGL 178 (206)
T ss_pred cCCHHHHHHHHHcCCCEEEEC---CCC-CCCHHHHHHHHhhcCCCC-------eEEEECC-CCHHHHHHHHHCCCeEEEE
Confidence 334667777788999999973 111 111233333333332 11 1134787 4778888899999999988
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 179 ~s 180 (206)
T PRK09140 179 GS 180 (206)
T ss_pred eh
Confidence 74
No 112
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.74 E-value=0.011 Score=62.51 Aligned_cols=116 Identities=20% Similarity=0.164 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--- 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--- 195 (671)
+..++.|.+. ++|+| | ....+.+.-+.++.+|+.| ....+|+. .|.+.+.+.++.|+|.|.--+.+|+.-
T Consensus 79 ~~Ea~~L~~~--GvDiI--D-eTe~lrPade~~~~~K~~f-~vpfmad~-~~l~EAlrai~~GadmI~Tt~e~gTg~v~~ 151 (287)
T TIGR00343 79 FVEAQILEAL--GVDYI--D-ESEVLTPADWTFHIDKKKF-KVPFVCGA-RDLGEALRRINEGAAMIRTKGEAGTGNIVE 151 (287)
T ss_pred HHHHHHHHHc--CCCEE--E-ccCCCCcHHHHHHHHHHHc-CCCEEccC-CCHHHHHHHHHCCCCEEeccccCCCccHHH
Confidence 5566777776 77877 5 3344555666777777778 55566654 677888888999999998888777641
Q ss_pred -------EE----Ee-------------cccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 196 -------TT----RL-------------KNKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 196 -------~t----~v-------------~~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++ .+ ++..+++.++..+. .+| +.|||.|.+.+..++++|||||-||
T Consensus 152 av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVG 228 (287)
T TIGR00343 152 AVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 228 (287)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEh
Confidence 00 01 01124555555553 356 4799999999999999999999998
No 113
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.73 E-value=0.071 Score=57.74 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=103.1
Q ss_pred CcccCceEEecCCCccccHHHHHHHHHcC-CeEE---eecCCCHHHH---HHhhhc-CcccccceEEe-cCCChhhHHHH
Q psy3862 52 KTYQGVPIIAANMDTVGTFEMAKHLAKHG-LFTT---IHKYYTLEEW---KAFAVQ-NPDVIKHVAVS-SGISAKDLAGL 122 (671)
Q Consensus 52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~g-glgv---Ih~n~~~Eeq---~~~i~~-~p~~~~~~~v~-~G~~~~d~~rl 122 (671)
++.+..|++.+||.++|+..+.....+.| ++.+ +..+ ...+ ...... ..+...++.+. .|..++++.++
T Consensus 5 ~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~--~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~a 82 (321)
T PRK10415 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSN--PQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADA 82 (321)
T ss_pred CccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcc--hhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHH
Confidence 56678899999999999988888666666 3322 2211 1011 111111 11111233332 35666776555
Q ss_pred HHHHHhCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEE-EEe----ccHHHHHHHHHC
Q psy3862 123 KEILAALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIA-GNV----VTGEMVEELILS 180 (671)
Q Consensus 123 ~~l~~a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~-g~v----~t~e~a~~Li~A 180 (671)
.+++.. .+.+.|-+|..= | +++...+.++.+++. +|...++- |.. .+.+-++.|.++
T Consensus 83 a~~~~~-~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 83 ARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHH-CCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 554432 256666555321 1 123344556666553 47665553 211 234677889999
Q ss_pred CCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH-cCCCEEEEc
Q psy3862 181 GADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL-SGADVIKVG 241 (671)
Q Consensus 181 GaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~-aGAdgvkVG 241 (671)
|+|.|.+.+... . .......+...+..++ .+| ..|+|.|.+.++.+++ .|||||.+|
T Consensus 162 G~d~i~vh~rt~---~-~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 162 GIQALTIHGRTR---A-CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred CCCEEEEecCcc---c-cccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 999998844110 0 0000112333333332 356 6999999999999997 799999999
No 114
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.71 E-value=0.02 Score=58.44 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
-.+.++++++..+....++|.+.+.++++.++++|||.++++.+.
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 355677776654433567778899999999999999999886544
No 115
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.011 Score=59.64 Aligned_cols=168 Identities=24% Similarity=0.249 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCce--ee
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKD--VM 301 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdD--Vl 301 (671)
...|+++.+.||-|+|.. | |-+.........++||. =+|-||+| |-
T Consensus 36 ~~mA~Aa~~gGAvgiR~~---------------g------v~dIkai~~~v~vPIIG-----------IiKrd~~~s~v~ 83 (229)
T COG3010 36 AAMALAAEQGGAVGIRIE---------------G------VEDIKAIRAVVDVPIIG-----------IIKRDYPDSPVR 83 (229)
T ss_pred HHHHHHHHhCCcceEeec---------------c------hhhHHHHHhhCCCCeEE-----------EEecCCCCCCce
Confidence 467899999999999987 2 33344444445678887 23455555 77
Q ss_pred eecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC-CHHHHHHHHhcCccc
Q psy3862 302 LRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY-TLEEWKAFAVQNPDV 380 (671)
Q Consensus 302 l~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~-~~e~~~~~v~~~~~~ 380 (671)
|-|-..+++- -...++-||| +|... =.|.. ++++.+...+ .|
T Consensus 84 ITptlkeVd~----------------L~~~Ga~IIA--~DaT~----------------R~RP~~~~~~~i~~~k-~~-- 126 (229)
T COG3010 84 ITPTLKEVDA----------------LAEAGADIIA--FDATD----------------RPRPDGDLEELIARIK-YP-- 126 (229)
T ss_pred ecccHHHHHH----------------HHHCCCcEEE--eeccc----------------CCCCcchHHHHHHHhh-cC--
Confidence 7776655441 1123444554 22111 01333 4555555422 12
Q ss_pred ccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHH-
Q psy3862 381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAK- 456 (671)
Q Consensus 381 ~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~- 456 (671)
..+.-+-..+.||.-...++|+|++= .+..||..+.-+. .-|+++.+|+.... +|.-|...+.+.++
T Consensus 127 -~~l~MAD~St~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~------~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~ 197 (229)
T COG3010 127 -GQLAMADCSTFEEGLNAHKLGFDIIG--TTLSGYTGYTEKP------TEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKK 197 (229)
T ss_pred -CcEEEeccCCHHHHHHHHHcCCcEEe--cccccccCCCCCC------CCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHH
Confidence 23333444455666666889999875 2557887644322 23555555655433 78889899999988
Q ss_pred HHHcCCcEEEECc
Q psy3862 457 AMGAGADFVMLGG 469 (671)
Q Consensus 457 ~l~aGAd~V~vG~ 469 (671)
+++.||++|.||.
T Consensus 198 a~~~Ga~aVvVGs 210 (229)
T COG3010 198 AIEIGADAVVVGS 210 (229)
T ss_pred HHHhCCeEEEECc
Confidence 7999999999994
No 116
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.055 Score=54.62 Aligned_cols=169 Identities=24% Similarity=0.256 Sum_probs=102.3
Q ss_pred eEEecCCCccc-cHHHHHHHHHcCCeEEeecCCCHHHHHHhhh---cCccc--ccc-eEEe-cCCChhhHHHHHHHHHhC
Q psy3862 58 PIIAANMDTVG-TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAV---QNPDV--IKH-VAVS-SGISAKDLAGLKEILAAL 129 (671)
Q Consensus 58 Piv~a~M~~vt-~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~---~~p~~--~~~-~~v~-~G~~~~d~~rl~~l~~a~ 129 (671)
|+=.+||+... -..||.|....|..|+ ..| ++++... ++ ..|.. +|+ +--+ +-+++ .++.+++|.++
T Consensus 23 al~~~pl~~~~iv~~mA~Aa~~gGAvgi-R~~-gv~dIka-i~~~v~vPIIGIiKrd~~~s~v~ITp-tlkeVd~L~~~- 97 (229)
T COG3010 23 ALPGEPLDSPEIVAAMALAAEQGGAVGI-RIE-GVEDIKA-IRAVVDVPIIGIIKRDYPDSPVRITP-TLKEVDALAEA- 97 (229)
T ss_pred cCCCCCCcchhHHHHHHHHHHhCCcceE-eec-chhhHHH-HHhhCCCCeEEEEecCCCCCCceecc-cHHHHHHHHHC-
Confidence 44456777653 4678887666666676 222 3444322 22 22321 110 0000 00122 25677888888
Q ss_pred CCceEEEeeccCC-CCh-HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--EEE--ecccC
Q psy3862 130 PEIEYICLDVANG-YTQ-TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--TTR--LKNKT 203 (671)
Q Consensus 130 ~~~d~Ivld~a~G-~~~-~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~t~--v~~~~ 203 (671)
++++|.+|.-.- -+. .+-+++++ ..||+ ++..+-..|.|.+....++|+|+| |+.. .|. .+...
T Consensus 98 -Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~-~l~MAD~St~ee~l~a~~~G~D~I------GTTLsGYT~~~~~~~~ 167 (229)
T COG3010 98 -GADIIAFDATDRPRPDGDLEELIAR--IKYPG-QLAMADCSTFEEGLNAHKLGFDII------GTTLSGYTGYTEKPTE 167 (229)
T ss_pred -CCcEEEeecccCCCCcchHHHHHHH--hhcCC-cEEEeccCCHHHHHHHHHcCCcEE------ecccccccCCCCCCCC
Confidence 889999985421 122 34445554 34776 455557788999999999999999 3321 111 23334
Q ss_pred Ccchhhhhccc--cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 204 SDFFLIQFYSC--IP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 204 ~~~~~i~~i~~--~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
|++.++..+.. .+ +=|++-|.+.++.+++.||++|-||
T Consensus 168 pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG 209 (229)
T COG3010 168 PDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVG 209 (229)
T ss_pred CcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEEC
Confidence 77766655432 22 7899999999999999999999999
No 117
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.60 E-value=0.0061 Score=60.79 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--
Q psy3862 363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL-- 440 (671)
Q Consensus 363 r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~-- 440 (671)
|..++++...++++.- .+.-+-..+-||.....++|+|++.- +..||..+.-. .-|+++.+++..
T Consensus 77 Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~T--TLsGYT~~t~~-------~~pD~~lv~~l~~~ 143 (192)
T PF04131_consen 77 RPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIGT--TLSGYTPYTKG-------DGPDFELVRELVQA 143 (192)
T ss_dssp -SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE---TTTTSSTTSTT-------SSHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEEc--ccccCCCCCCC-------CCCCHHHHHHHHhC
Confidence 4566777777776532 12222223446677778999999984 56788765543 224444443322
Q ss_pred -CceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 441 -GGVVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 441 -~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
-.+|.-|.+.+.+.++ +|++||++|.||.
T Consensus 144 ~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 144 DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 2277777788887766 8999999999994
No 118
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.49 E-value=0.21 Score=50.82 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCC-ceEEEEEeccHHHHHHHHHCCCcEEEECcC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIKVGIG 190 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdga 190 (671)
+.+.++. +.++.+++. ++..+=+-. ...+..+.++.+++.||. ..+=+|.+.+.++++..+++|+|+++.-+.
T Consensus 18 ~~~~~~~~~~~~a~~~g--Gi~~iEvt~---~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~ 92 (206)
T PRK09140 18 GITPDEALAHVGALIEA--GFRAIEIPL---NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT 92 (206)
T ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEeC---CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC
Confidence 3444443 334555665 555543321 124566788888888885 445566889999999999999999965221
Q ss_pred CCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862 191 PGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 191 ~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
. ..+++... .+| ..| +-|.+.+..+.++|||-+++
T Consensus 93 ~--------------~~v~~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 93 D--------------PEVIRRAVALGMVVMPG-VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred C--------------HHHHHHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEE
Confidence 1 11222221 133 344 88999999999999999986
No 119
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.46 E-value=0.017 Score=59.10 Aligned_cols=70 Identities=31% Similarity=0.475 Sum_probs=44.9
Q ss_pred cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
|..++.|+....++|+|++.+- .... ...+.++.++..||.+. =+-.|| +...++.+.+.+||++|=+
T Consensus 115 G~~T~~E~~~A~~~Gad~vklF---Pa~~-~G~~~ik~l~~~~p~ip-------~~atGG-I~~~N~~~~l~aGa~~vav 182 (213)
T PRK06552 115 GCMTVTEIVTALEAGSEIVKLF---PGST-LGPSFIKAIKGPLPQVN-------VMVTGG-VNLDNVKDWFAAGADAVGI 182 (213)
T ss_pred CcCCHHHHHHHHHcCCCEEEEC---Cccc-CCHHHHHHHhhhCCCCE-------EEEECC-CCHHHHHHHHHCCCcEEEE
Confidence 4446777777788999999983 1111 11333444444444331 133677 5788888899999999987
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 183 gs 184 (213)
T PRK06552 183 GG 184 (213)
T ss_pred ch
Confidence 74
No 120
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.43 E-value=0.16 Score=50.74 Aligned_cols=101 Identities=24% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
+.++.+++. ++..+-+-.- .....+.++.+++.+|....=++.+.+.++++.++++|+|.++...-.
T Consensus 28 ~~~~~~~~~--Gv~~vqlr~k---~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~-------- 94 (187)
T PRK07455 28 QMAEAVAAG--GMRLIEITWN---SDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVD-------- 94 (187)
T ss_pred HHHHHHHHC--CCCEEEEeCC---CCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCC--------
Confidence 455666666 6666655322 123455666666667754444556777899999999999999652211
Q ss_pred cccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862 200 KNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 200 ~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
.++++... .++ +-| +.|...+..+.++|||-+++
T Consensus 95 ------~~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 95 ------PELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred ------HHHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEE
Confidence 01111111 122 345 89999999999999999987
No 121
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.40 E-value=0.027 Score=59.48 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--- 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--- 195 (671)
+..++.++++ ++|+| | +...+.+.-++++.+|+.| +..++| -+.|.+.+.+.++.|+|.|.-...+++.-
T Consensus 77 ~~Ea~~L~ea--GvDiI--D-aT~r~rP~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEAL--GVDMI--D-ESEVLTPADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHc--CCCEE--e-ccCCCCcHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHH
Confidence 5677888888 77877 4 4344455666777777788 544555 55788999999999999997776655431
Q ss_pred -EE------------------E----ecccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 196 -TT------------------R----LKNKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 196 -~t------------------~----v~~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++ . -+...+++.++..+. .+| +-|||.|.+.++.++++|||||-||
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 00 0 001124555544442 256 3799999999999999999999998
No 122
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.33 E-value=0.071 Score=54.51 Aligned_cols=109 Identities=23% Similarity=0.224 Sum_probs=75.5
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
+.+.++. +.++.+.+. +.+.+=+-. ...+..+.++.+++.||+..+-+|.+.+.+.++.++++|+|+++. +
T Consensus 23 ~~~~~~a~~i~~al~~~--Gi~~iEitl---~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs---P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAG--GLPVLEVTL---RTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS---P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHc--CCCEEEEec---CCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC---C
Confidence 4444443 344555555 555543321 134678888999888998777888999999999999999999964 3
Q ss_pred CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
+.. + .+++... .+|..=|+.|...+..++++||+-||+
T Consensus 95 ~~~----------~-~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 GLT----------P-PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCC----------H-HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 211 1 2233332 245555888888899999999999998
No 123
>PLN02826 dihydroorotate dehydrogenase
Probab=96.32 E-value=0.05 Score=60.84 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=49.6
Q ss_pred CCceEEEEEec---cHHHHHHHHHCCCcEEEECc-----------------CCCceEEEEecccCCcchhhhhc-c----
Q psy3862 159 PKHVIIAGNVV---TGEMVEELILSGADVIKVGI-----------------GPGSVCTTRLKNKTSDFFLIQFY-S---- 213 (671)
Q Consensus 159 P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdg-----------------a~G~~~~t~v~~~~~~~~~i~~i-~---- 213 (671)
|...|++.+.. ..+-++.++++|+|.|++-- .+|.+ -.-+++ .++.++..+ +
T Consensus 264 Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS-G~pl~~--~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 264 PLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLS-GKPLFD--LSTEVLREMYRLTRG 340 (409)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcC-CccccH--HHHHHHHHHHHHhCC
Confidence 65666665543 23558889999999997732 01111 000000 011122222 1
Q ss_pred ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+| ..|||.|++.+.+.|.+||+.|+|+
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 245 6999999999999999999999998
No 124
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.30 E-value=0.18 Score=51.17 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEE--ccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTI--HKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvi--hr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
++||+- +|.+.+.+.+..+.+.|.=+++ ..-.++++..+++.....+ ..-......+.+++.++.+.|+|++.+-
T Consensus 72 ~iPi~~--~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~-g~~~~v~v~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 72 SLPVLR--KDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELAREL-GMEVLVEVHDEEELERALALGAKIIGIN 148 (217)
T ss_pred CCCEEE--CCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHcCCCEEEEe
Confidence 589985 8899999999999999988887 3445554443433322111 0000111236678888889999999875
Q ss_pred cccccccc-cccccccccccccccccccccccC---cee-eccccCchhHHHHHHcCCcEEEECc
Q psy3862 410 GMFAGHDQ-SGGELTNIEYMFFPLVGDMNSYLG---GVV-DGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 410 ~~a~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~i-~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
...++.. ..++.++ .+++.++ .++ .||+-...++.+++.+|||+|.||.
T Consensus 149 -~~~~~~~~~~~~~~~----------~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 149 -NRDLKTFEVDLNTTE----------RLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred -CCCccccCcCHHHHH----------HHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 2223311 1112222 2223221 233 4664333666668899999999995
No 125
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.21 E-value=0.018 Score=58.67 Aligned_cols=66 Identities=21% Similarity=0.061 Sum_probs=42.7
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCceEE-EEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSVCT-TRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~~~-t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.+.++.+.++|||+|++|.+...... ..+ ..+++.+. .+|+..++.|.+.++.+.++|+|.+.++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~------~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETL------AELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCH------HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 567899999999999999876532100 000 01111221 1234556778899999999999988654
No 126
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.19 E-value=0.02 Score=60.69 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--- 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--- 195 (671)
+..++.+.+. ++|+| | ....+.+.-+.++.+|+.| ....+|+ ..|.+.+.+.++.|+|.|.--|-.|+.-
T Consensus 86 ~~Ea~~L~~~--GvDiI--D-~Te~lrpad~~~~~~K~~f-~~~fmad-~~~l~EAlrai~~GadmI~Ttge~gtg~v~~ 158 (293)
T PRK04180 86 FVEAQILEAL--GVDYI--D-ESEVLTPADEEYHIDKWDF-TVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVE 158 (293)
T ss_pred HHHHHHHHHc--CCCEE--e-ccCCCCchHHHHHHHHHHc-CCCEEcc-CCCHHHHHHHHHCCCCeeeccCCCCCccHHH
Confidence 4556666666 77777 4 3334455556777777778 4455654 4677888889999999998887656530
Q ss_pred -EEE-------ec---------------ccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 196 -TTR-------LK---------------NKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 196 -~t~-------v~---------------~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.++ ++ ...+++.++..+. .+| +.|||.|.+.++.++++|||+|-||
T Consensus 159 av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVG 234 (293)
T PRK04180 159 AVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVG 234 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEc
Confidence 110 00 0124555555553 357 4699999999999999999999998
No 127
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.14 E-value=0.12 Score=56.38 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=98.3
Q ss_pred CceEEecCCCccccHHHHHHHHHcCC--eE---EeecC-CCHHHHHHhhhcCcccccceEEe-cCCChhhHHHHHHHHHh
Q psy3862 56 GVPIIAANMDTVGTFEMAKHLAKHGL--FT---TIHKY-YTLEEWKAFAVQNPDVIKHVAVS-SGISAKDLAGLKEILAA 128 (671)
Q Consensus 56 ~~Piv~a~M~~vt~~~lA~Ala~~gg--lg---vIh~n-~~~Eeq~~~i~~~p~~~~~~~v~-~G~~~~d~~rl~~l~~a 128 (671)
+-|++.+||.++|+..+..-..+.|+ +- +++.. .....+.++....+ ...|+.+. .|..++++.++.+++..
T Consensus 10 ~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~-~e~p~~vQl~g~~p~~~~~aA~~~~~ 88 (333)
T PRK11815 10 SRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDP-EEHPVALQLGGSDPADLAEAAKLAED 88 (333)
T ss_pred CCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCC-CCCcEEEEEeCCCHHHHHHHHHHHHh
Confidence 45899999999999877665555564 22 13322 11111222222222 22355443 25666666655554443
Q ss_pred CCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEEEEe---c----cHHHHHHHHHCCCcE
Q psy3862 129 LPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIAGNV---V----TGEMVEELILSGADV 184 (671)
Q Consensus 129 ~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~g~v---~----t~e~a~~Li~AGaD~ 184 (671)
.+.|.|-++..- | .++...+.++.+++. +|...++-... . +.+.++.|.++|+|.
T Consensus 89 -~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~ 167 (333)
T PRK11815 89 -WGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDT 167 (333)
T ss_pred -cCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCE
Confidence 155666554321 1 123344556666653 56655542221 1 235678889999999
Q ss_pred EEECcCC----CceEE--EEecccCCcchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 185 IKVGIGP----GSVCT--TRLKNKTSDFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 185 IvVdga~----G~~~~--t~v~~~~~~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.. |.+-. ..+.. .+...+..+ ..+| ..|+|-|.+.+..+++ |||||.||
T Consensus 168 i~vh~Rt~~~~g~~~~~~~~~~~--~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 168 FIVHARKAWLKGLSPKENREIPP--LDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred EEEcCCchhhcCCCccccccCCC--cCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 9986532 21100 00000 011122112 1245 6899999999999997 79999999
No 128
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.13 E-value=0.01 Score=59.89 Aligned_cols=71 Identities=30% Similarity=0.409 Sum_probs=43.3
Q ss_pred cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
|+.++.|+....++|+|++-+= .....--.+.++.++.-||.+. | .-.|| |...++...+++|+.++-+
T Consensus 107 G~~TptEi~~A~~~G~~~vK~F---PA~~~GG~~~ik~l~~p~p~~~----~---~ptGG-V~~~N~~~~l~ag~~~vg~ 175 (196)
T PF01081_consen 107 GVMTPTEIMQALEAGADIVKLF---PAGALGGPSYIKALRGPFPDLP----F---MPTGG-VNPDNLAEYLKAGAVAVGG 175 (196)
T ss_dssp EESSHHHHHHHHHTT-SEEEET---TTTTTTHHHHHHHHHTTTTT-E----E---EEBSS---TTTHHHHHTSTTBSEEE
T ss_pred CcCCHHHHHHHHHCCCCEEEEe---cchhcCcHHHHHHHhccCCCCe----E---EEcCC-CCHHHHHHHHhCCCEEEEE
Confidence 5556788888889999999975 2221111234444555555553 1 22566 6788888899999999876
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 176 Gs 177 (196)
T PF01081_consen 176 GS 177 (196)
T ss_dssp ES
T ss_pred Cc
Confidence 64
No 129
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.09 E-value=0.012 Score=62.33 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~ 222 (671)
.+.+.++++|+.+|...++..-+.+.|.++.++++|+|+|-+|.-.-.. +...++...|+.. +-+.|||
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~-------ieAsGgI- 238 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRNANYPHVL-------LEASGNI- 238 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeE-------EEEECCC-
Confidence 4566778778888865667668889999999999999999887532110 0000111112110 1279999
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.++++.++|+|.+=+|
T Consensus 239 t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 239 TLENINAYAKSGVDAISSG 257 (273)
T ss_pred CHHHHHHHHHcCCCEEEeC
Confidence 9999999999999999887
No 130
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.08 E-value=0.044 Score=56.03 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCcEEEECc-CCCc-eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862 171 GEMVEELILSGADVIKVGI-GPGS-VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI 238 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdg-a~G~-~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv 238 (671)
.+.++.|.+.|+++|-+.- .+.. -.++.+++++|++.+ -||-|-|.++++.++++||+-+
T Consensus 30 ~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~I--------GAGTVl~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 30 VPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALI--------GAGTVLNPEQLAQAIEAGAQFI 91 (212)
T ss_pred HHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEE--------EEeeccCHHHHHHHHHcCCCEE
Confidence 4678889999999997742 1110 122233333333211 4999999999999999999988
No 131
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.03 E-value=0.22 Score=53.84 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=103.7
Q ss_pred ceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHH------HHHhhh---c---CcccccceEEec-CCChhhHHHH
Q psy3862 57 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEE------WKAFAV---Q---NPDVIKHVAVSS-GISAKDLAGL 122 (671)
Q Consensus 57 ~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Ee------q~~~i~---~---~p~~~~~~~v~~-G~~~~d~~rl 122 (671)
+|++-+||.++|+..+.....+.|+.+.... +.+.+. ...... . ......|+.+.. |..++++.++
T Consensus 1 ~~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~a 80 (312)
T PRK10550 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAEN 80 (312)
T ss_pred CCeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHH
Confidence 4899999999999888886677775443221 111110 010000 0 001123454432 5666666544
Q ss_pred HHHHHhCCCceEEEeeccC--------C-------CChHHHHHHHHHHHh----CCCceEEEEEe----ccHHHHHHHHH
Q psy3862 123 KEILAALPEIEYICLDVAN--------G-------YTQTFVDFVRRIREM----YPKHVIIAGNV----VTGEMVEELIL 179 (671)
Q Consensus 123 ~~l~~a~~~~d~Ivld~a~--------G-------~~~~~~~~ik~lr~~----~P~~~li~g~v----~t~e~a~~Li~ 179 (671)
.+.+.. .+.+.|-++... | .+....+.++.+++. .|...++-... .+.+.++.|.+
T Consensus 81 A~~~~~-~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 81 AARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHH-cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 333332 155666555332 1 123344556666654 35555553221 13577888999
Q ss_pred CCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHH-HcCCCEEEEcccCCCccccc
Q psy3862 180 SGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGADVIKVGIGPGSVCTTR 251 (671)
Q Consensus 180 AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAdgvkVG~~~~~~~~Tr 251 (671)
+|+|.|.|.+.-. ... ...+ +...+.-++ .+| .-|+|-|.+.+..++ ..|||+|.||
T Consensus 160 ~Gvd~i~Vh~Rt~---~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG---------- 224 (312)
T PRK10550 160 AGATELVVHGRTK---EDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG---------- 224 (312)
T ss_pred cCCCEEEECCCCC---ccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc----------
Confidence 9999999954110 000 0001 222222222 256 689999999999999 5899999999
Q ss_pred eecccCcchh
Q psy3862 252 LKTGVGYPQF 261 (671)
Q Consensus 252 ~V~gv~~~~~ 261 (671)
-..++.|-+
T Consensus 225 -Rg~l~nP~l 233 (312)
T PRK10550 225 -RGALNIPNL 233 (312)
T ss_pred -HHhHhCcHH
Confidence 445667744
No 132
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.03 E-value=0.074 Score=53.75 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
+.+.++. +.++.+++. +...+=+.. ...+..+.++.+++.||+..+=+|.|.|.+++++++++||++++- +
T Consensus 16 ~~~~~~a~~~~~al~~g--Gi~~iEiT~---~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS---P 87 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEG--GIRAIEITL---RTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS---P 87 (196)
T ss_dssp TSSGGGHHHHHHHHHHT--T--EEEEET---TSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE---S
T ss_pred cCCHHHHHHHHHHHHHC--CCCEEEEec---CCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC---C
Confidence 3444444 455667776 555543221 135677888888888998777778899999999999999999953 3
Q ss_pred CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+- +-.+++.+. .+|..=|+.|..-+..++++|++-||+=
T Consensus 88 ~~-----------~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 88 GF-----------DPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLF 128 (196)
T ss_dssp S-------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEET
T ss_pred CC-----------CHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEe
Confidence 21 112333332 3566679999999999999999999986
No 133
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.03 E-value=0.095 Score=56.75 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=103.8
Q ss_pred eEEecCCCccccHHHHHHHHHcCC--eEE---eecCCCH-HHHHHhhhcCcccccceEEe-cCCChhhHHHHHHHHHhCC
Q psy3862 58 PIIAANMDTVGTFEMAKHLAKHGL--FTT---IHKYYTL-EEWKAFAVQNPDVIKHVAVS-SGISAKDLAGLKEILAALP 130 (671)
Q Consensus 58 Piv~a~M~~vt~~~lA~Ala~~gg--lgv---Ih~n~~~-Eeq~~~i~~~p~~~~~~~v~-~G~~~~d~~rl~~l~~a~~ 130 (671)
|++-+||.++|+..+...+.+.|. +-+ ++...-. ....++....| ...|+.+. .|..++++.++..++...
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~-~e~p~~vQl~g~~p~~~~~aA~~~~~~- 79 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSP-EESPVALQLGGSDPNDLAKCAKIAEKR- 79 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCC-CCCcEEEEEccCCHHHHHHHHHHHHhC-
Confidence 688999999999887776666664 322 3322111 11112221222 23355443 256667776666665532
Q ss_pred CceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEEEEe-------ccHHHHHHHHHCCCcEEE
Q psy3862 131 EIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIAGNV-------VTGEMVEELILSGADVIK 186 (671)
Q Consensus 131 ~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~g~v-------~t~e~a~~Li~AGaD~Iv 186 (671)
+.+.|-+|..- | .++...+.++.+++. .|...++--.. .+.+.++.|.++|+|+|.
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 55666555321 1 123344556666553 57666663221 123558889999999998
Q ss_pred ECcC----CCceEEEEecccCC--cchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceec
Q psy3862 187 VGIG----PGSVCTTRLKNKTS--DFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254 (671)
Q Consensus 187 Vdga----~G~~~~t~v~~~~~--~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~ 254 (671)
+-+. +|.+-... ...+ +...+..+ ..+| .-|+|-|.+.+...+. |||||.|| -.
T Consensus 160 vHgRt~~~qg~sg~~~--~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig-----------Rg 225 (318)
T TIGR00742 160 VHARKAWLSGLSPKEN--REIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG-----------RE 225 (318)
T ss_pred EeCCchhhcCCCcccc--ccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC-----------HH
Confidence 8542 22110000 0001 11111111 1356 5899999999999996 99999999 44
Q ss_pred ccCcchhh
Q psy3862 255 GVGYPQFS 262 (671)
Q Consensus 255 gv~~~~~~ 262 (671)
..+.|.+-
T Consensus 226 al~nP~if 233 (318)
T TIGR00742 226 AYENPYLL 233 (318)
T ss_pred HHhCCHHH
Confidence 55677543
No 134
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.02 E-value=0.12 Score=52.55 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=76.3
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
+.+.++. +.++.+++. +...+=+.- ...+..+.++++++.||...+=+|.|.|.+++++++++|+++++- +
T Consensus 12 ~~~~~~a~~ia~al~~g--Gi~~iEit~---~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS---P 83 (201)
T PRK06015 12 IDDVEHAVPLARALAAG--GLPAIEITL---RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS---P 83 (201)
T ss_pred cCCHHHHHHHHHHHHHC--CCCEEEEeC---CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC---C
Confidence 3344433 345556665 555432221 134567888888888997666677899999999999999999953 3
Q ss_pred CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+. +-.+++... .+|..=|+.|..-+.+++++||+-||+=
T Consensus 84 ~~-----------~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 84 GT-----------TQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CC-----------CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence 21 112333332 3566679999999999999999999986
No 135
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.95 E-value=0.17 Score=53.18 Aligned_cols=128 Identities=17% Similarity=0.104 Sum_probs=67.8
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCe--EEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLF--TTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Ggl--gvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
++||+- .|.++.+-++.+....|.= .++-...++++..+++....++ ..-.-+-.-+.+++.+..++|+|+|.+.
T Consensus 111 ~iPvl~--kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-Gl~~lvevh~~~E~~~A~~~gadiIgin 187 (260)
T PRK00278 111 SLPVLR--KDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-GLDVLVEVHDEEELERALKLGAPLIGIN 187 (260)
T ss_pred CCCEEe--eeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence 589996 8899999886666666543 3333454555555555432221 0000011224577777889999999974
Q ss_pred ccccccc-ccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 410 GMFAGHD-QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 410 ~~a~gh~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
... =+. +-..+....+...+|. -..-+..||+....++.+++.+|||+|.||.
T Consensus 188 ~rd-l~~~~~d~~~~~~l~~~~p~------~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs 241 (260)
T PRK00278 188 NRN-LKTFEVDLETTERLAPLIPS------DRLVVSESGIFTPEDLKRLAKAGADAVLVGE 241 (260)
T ss_pred CCC-cccccCCHHHHHHHHHhCCC------CCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence 100 000 0001111111111110 0011335776555666668899999999985
No 136
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.94 E-value=0.46 Score=48.26 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=96.7
Q ss_pred eEEecCCCccccHHHHHHHHHcC-CeE---EeecCCCHHHHHH---hhhcCcccccceEEec-CCChhhHHHHHHHHHhC
Q psy3862 58 PIIAANMDTVGTFEMAKHLAKHG-LFT---TIHKYYTLEEWKA---FAVQNPDVIKHVAVSS-GISAKDLAGLKEILAAL 129 (671)
Q Consensus 58 Piv~a~M~~vt~~~lA~Ala~~g-glg---vIh~n~~~Eeq~~---~i~~~p~~~~~~~v~~-G~~~~d~~rl~~l~~a~ 129 (671)
|++.+||.++|+..+...+.+.| -+- +++.+........ +.... ....|+.++. |..++++.+..+.+..
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~qi~g~~~~~~~~aa~~~~~- 78 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRN-PEERPLIVQLGGSDPETLAEAAKIVEE- 78 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccC-ccCCCEEEEEcCCCHHHHHHHHHHHHh-
Confidence 57889999999987777555555 111 1333211111111 11111 1223444433 3456666554443332
Q ss_pred CCceEEEeeccCC---------------CChHHHHHHHHHHHhC--CCceEEEEEe----ccHHHHHHHHHCCCcEEEEC
Q psy3862 130 PEIEYICLDVANG---------------YTQTFVDFVRRIREMY--PKHVIIAGNV----VTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 130 ~~~d~Ivld~a~G---------------~~~~~~~~ik~lr~~~--P~~~li~g~v----~t~e~a~~Li~AGaD~IvVd 188 (671)
.+.+.|-++.+.- .++...+.++.+++.. |...++-... .+.+.++.|.++|+|.|.+.
T Consensus 79 aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 79 LGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVH 158 (231)
T ss_pred cCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEEC
Confidence 2677777765431 2344556677776654 3333332111 23466778889999999885
Q ss_pred cCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862 189 IGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG 241 (671)
Q Consensus 189 ga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG 241 (671)
+..... ... ...++..+..+. .+| +.|||-|.+.+..+++. |||+|.+|
T Consensus 159 ~~~~~~---~~~-~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 159 GRTREQ---RYS-GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCCHHH---cCC-CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 421100 000 011222222221 346 68999999999999998 89999988
No 137
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.13 Score=52.50 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=39.6
Q ss_pred eEEEccCCCHH--------HHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 358 FTTIHKYYTLE--------EWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 358 lgvihr~~~~e--------~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
.-++||..|.| +..+.+++..+..-.++.+||++++++..+...|+|++++.
T Consensus 133 ~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvG 192 (217)
T COG0269 133 QVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVG 192 (217)
T ss_pred EEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEEC
Confidence 34688877766 33445555444445789999999999999999999999986
No 138
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.83 E-value=0.064 Score=51.73 Aligned_cols=114 Identities=25% Similarity=0.317 Sum_probs=66.3
Q ss_pred HHHHhCCCceEEEeeccCCC-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHH-HHHCCCcEEEECcCCCceEEEEecc
Q psy3862 124 EILAALPEIEYICLDVANGY-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEE-LILSGADVIKVGIGPGSVCTTRLKN 201 (671)
Q Consensus 124 ~l~~a~~~~d~Ivld~a~G~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~-Li~AGaD~IvVdga~G~~~~t~v~~ 201 (671)
.+.++ +.+.+.+...+.+ ++...+.++.+++.+|...++..-....+..+. +.+.|+|.|.++...++........
T Consensus 79 ~~~~~--g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~ 156 (200)
T cd04722 79 AARAA--GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVP 156 (200)
T ss_pred HHHHc--CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCch
Confidence 34444 6788888766543 133566677777666544444432222221222 7899999999987544321110000
Q ss_pred cCCcchhhhhc---cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 202 KTSDFFLIQFY---SCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 202 ~~~~~~~i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.....+..+ ..+| .+|||.+++.+..++++|||++-||
T Consensus 157 --~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 157 --IADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred --hHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 000011111 1245 7999999999999999999999887
No 139
>KOG0538|consensus
Probab=95.69 E-value=0.089 Score=56.00 Aligned_cols=260 Identities=20% Similarity=0.265 Sum_probs=149.6
Q ss_pred CceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC--CC----CCCHHHHHHHHHcCCeEEEc--cCCCHH
Q psy3862 297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM--DT----VGTFEMAKHLAKHGLFTTIH--KYYTLE 368 (671)
Q Consensus 297 fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M--Dt----V~~~~mA~~la~~Gglgvih--r~~~~e 368 (671)
|.-++|+|.+- ..-+.+|+++++- ......||.-||. .- =+|...|++-++.|-+-++- -.+|+|
T Consensus 40 F~ri~~rPr~L--~dVs~iD~sTtvl-----G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~E 112 (363)
T KOG0538|consen 40 FRRILFRPRIL--RDVSKIDTSTTVL-----GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVE 112 (363)
T ss_pred HHhhhccchhh--eecccccccceec-----cccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHH
Confidence 67789999872 2236889998864 3556789987753 22 36777899999988888887 578899
Q ss_pred HHHHHHhcCcccccceeeecccChhhH-HHH----HHcCCcEEEE--ccccccccccc----------cccccc------
Q psy3862 369 EWKAFAVQNPDVIKHVADGGCTSPGDV-AKA----MGAGADFVML--GGMFAGHDQSG----------GELTNI------ 425 (671)
Q Consensus 369 ~~~~~v~~~~~~~~~v~~~~~~~~~~~-~~l----~~aG~d~i~i--d~~a~gh~~~~----------~~~~~~------ 425 (671)
|.++..... ++ +.--=.-++.++ +.| -++|...|++ |.-.-|+-.+- +.+.+.
T Consensus 113 dI~~aap~~---~r-wfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~ 188 (363)
T KOG0538|consen 113 DIASAAPPG---IR-WFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLT 188 (363)
T ss_pred HHHhhCCCC---cE-EEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccc
Confidence 988754211 10 000000122232 222 3467666654 31112332100 000000
Q ss_pred --c-----------------ccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862 426 --E-----------------YMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKD 485 (671)
Q Consensus 426 --~-----------------~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~ 485 (671)
. ..-.-++.|+++... ++|.=|+....|..++.+.|+++|.|.. .| +|
T Consensus 189 ~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSN--HG-----gR----- 256 (363)
T KOG0538|consen 189 EVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSN--HG-----GR----- 256 (363)
T ss_pred cCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeC--CC-----cc-----
Confidence 0 001112333333332 2667786666666668999999999986 33 22
Q ss_pred CeEEEEeeCcccHHHHHhhcccccccc--ccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEec
Q psy3862 486 GKKVKLFYGMSSTTAMDKHAGGVAEYR--AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 563 (671)
Q Consensus 486 g~~~k~g~G~~q~tAi~~~a~~~~~y~--~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~ 563 (671)
|+-+...+.++..+.-.++..-. .-||+ |+..-||-||+|- |+ ++.|+
T Consensus 257 ----QlD~vpAtI~~L~Evv~aV~~ri~V~lDGG---VR~G~DVlKALAL-------GA-------------k~Vfi--- 306 (363)
T KOG0538|consen 257 ----QLDYVPATIEALPEVVKAVEGRIPVFLDGG---VRRGTDVLKALAL-------GA-------------KGVFI--- 306 (363)
T ss_pred ----ccCcccchHHHHHHHHHHhcCceEEEEecC---cccchHHHHHHhc-------cc-------------ceEEe---
Confidence 34567778888876543332100 01221 6888899999984 21 13343
Q ss_pred ccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccc
Q psy3862 564 AQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTY 643 (671)
Q Consensus 564 ~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y 643 (671)
| |- .-||-.. +|.. -++++|.-|..-+..+|+.
T Consensus 307 ---------------G-RP--~v~gLA~----------------------~Ge~-------GV~~vl~iL~~efe~tmaL 339 (363)
T KOG0538|consen 307 ---------------G-RP--IVWGLAA----------------------KGEA-------GVKKVLDILRDEFELTMAL 339 (363)
T ss_pred ---------------c-Cc--hheeecc----------------------ccch-------hHHHHHHHHHHHHHHHHHH
Confidence 1 00 1133222 2211 2788899999999999999
Q ss_pred cCccccccccccc
Q psy3862 644 VGASKLKELPRRA 656 (671)
Q Consensus 644 ~Ga~~l~el~~~a 656 (671)
.|.++++|+.++.
T Consensus 340 sGc~sv~ei~~~~ 352 (363)
T KOG0538|consen 340 SGCRSVKEITRNH 352 (363)
T ss_pred hCCCchhhhCccc
Confidence 9999999998864
No 140
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.65 E-value=0.01 Score=65.29 Aligned_cols=108 Identities=24% Similarity=0.296 Sum_probs=56.0
Q ss_pred ccCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccccccccccccccc--------ccc
Q psy3862 362 HKYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELTNI--------EYM 428 (671)
Q Consensus 362 hr~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~gh~~~~~~~~~~--------~~~ 428 (671)
|-.+|+|++.++|.+++++-. .++-+.+...+++.. ..++|+|+|+|||.--|-.-....+.+. +..
T Consensus 182 ~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 182 HDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 567899999999987765431 222222333355555 5789999999997553321111111110 111
Q ss_pred cccccc--ccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 429 FFPLVG--DMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 429 ~~~~~~--~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.+-.|. .+|+.+.=++.||.....++++++..|||.|-+|.
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt 304 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGT 304 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecc
Confidence 111110 11222222678999999999999999999997773
No 141
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.16 Score=55.24 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=106.2
Q ss_pred CcccCceEEecCCCccccHHHHHHHHHcCC--eE---EeecCCCHHHHHHhhhcCc--ccccceEEec-CCChhhHHHHH
Q psy3862 52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL--FT---TIHKYYTLEEWKAFAVQNP--DVIKHVAVSS-GISAKDLAGLK 123 (671)
Q Consensus 52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gg--lg---vIh~n~~~Eeq~~~i~~~p--~~~~~~~v~~-G~~~~d~~rl~ 123 (671)
+..++-+++-+||.++|+..+..-..+.|. +- +++..-...-..+.....+ +...|+.+.. |..++.+.+..
T Consensus 6 ~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA 85 (323)
T COG0042 6 LIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAA 85 (323)
T ss_pred cccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHH
Confidence 566678899999999999887774444354 21 1332200000000111111 1123444432 34555555554
Q ss_pred HHHHhCCCceEEEeecc----------CC-----CChHHHHHHHHHHHhC---CCceEEEEEe-----ccHHHHHHHHHC
Q psy3862 124 EILAALPEIEYICLDVA----------NG-----YTQTFVDFVRRIREMY---PKHVIIAGNV-----VTGEMVEELILS 180 (671)
Q Consensus 124 ~l~~a~~~~d~Ivld~a----------~G-----~~~~~~~~ik~lr~~~---P~~~li~g~v-----~t~e~a~~Li~A 180 (671)
+++... +.+.|-+|.. .| .++-+.+.++.+++.. |...|+=-.. ...+-++.+.++
T Consensus 86 ~~~~~~-g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~ 164 (323)
T COG0042 86 KIAEEL-GADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDA 164 (323)
T ss_pred HHHHhc-CCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence 444432 3455544421 01 1344555666665543 6655553322 235789999999
Q ss_pred CCcEEEECc---CCCce------EEEEecccCCcchhhhhccccC--CccccccHHHHHHHHH-cCCCEEEEcccCCCcc
Q psy3862 181 GADVIKVGI---GPGSV------CTTRLKNKTSDFFLIQFYSCIP--QAGNVVTGEMVEELIL-SGADVIKVGIGPGSVC 248 (671)
Q Consensus 181 GaD~IvVdg---a~G~~------~~t~v~~~~~~~~~i~~i~~~p--~aGnV~t~~~a~~li~-aGAdgvkVG~~~~~~~ 248 (671)
|+|.|.|.+ .++.. .+.++++.+++ +| +-|+|-|.+.++..++ .|+|||.||
T Consensus 165 g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~---------ipvi~NGdI~s~~~a~~~l~~tg~DgVMig------- 228 (323)
T COG0042 165 GADALTVHGRTRAQGYLGPADWDYIKELKEAVPS---------IPVIANGDIKSLEDAKEMLEYTGADGVMIG------- 228 (323)
T ss_pred CCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC---------CeEEeCCCcCCHHHHHHHHHhhCCCEEEEc-------
Confidence 999999955 22211 11122222222 44 6899999999999998 689999999
Q ss_pred ccceecccCcchhhh
Q psy3862 249 TTRLKTGVGYPQFSA 263 (671)
Q Consensus 249 ~Tr~V~gv~~~~~~~ 263 (671)
-...|.|-+-.
T Consensus 229 ----Rga~~nP~l~~ 239 (323)
T COG0042 229 ----RGALGNPWLFR 239 (323)
T ss_pred ----HHHccCCcHHH
Confidence 66677886543
No 142
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.62 E-value=0.069 Score=54.15 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCcEEEECcC-CCce-EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862 171 GEMVEELILSGADVIKVGIG-PGSV-CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI 238 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga-~G~~-~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv 238 (671)
.+.+++|++.|..+|-+--. ++.. ++.++++++|++. .=||.|-|.++++.++++||+-+
T Consensus 19 ~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~--------vGAGTVl~~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 19 VPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI--------VGAGTILNAKQFEDAAKAGSRFI 80 (201)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE--------EeeEeCcCHHHHHHHHHcCCCEE
Confidence 46788999999999966331 1110 1222222222211 13999999999999999999988
No 143
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.60 E-value=0.36 Score=49.74 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCceEE--EeeccCCCChHHHHHHHHH----HHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc
Q psy3862 120 AGLKEILAALPEIEYI--CLDVANGYTQTFVDFVRRI----REMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS 193 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~I--vld~a~G~~~~~~~~ik~l----r~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~ 193 (671)
+-++.+++. +...+ +++. .+..+.++++ ++.||+..+=+|.|.|.+++++++++|+++++- ++.
T Consensus 31 ~~~~al~~g--Gi~~iEiT~~t-----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs---P~~ 100 (222)
T PRK07114 31 KVIKACYDG--GARVFEFTNRG-----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT---PLF 100 (222)
T ss_pred HHHHHHHHC--CCCEEEEeCCC-----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC---CCC
Confidence 344556665 55543 3332 2234444444 356887666677899999999999999999953 332
Q ss_pred eEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 194 VCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 194 ~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+-.+++... .+|.-=|+.|..-+.+++++||+.||+=
T Consensus 101 -----------~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 101 -----------NPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred -----------CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence 122333332 3566779999999999999999999986
No 144
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=0.16 Score=51.78 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862 113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191 (671)
Q Consensus 113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~ 191 (671)
+.++++- ..++.+++. +.+.|=+-. .+....+.|+.+++.||...+=+|.|.+.+++++++++|++++|- +
T Consensus 21 ~~~~e~a~~~a~Ali~g--Gi~~IEITl---~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs---P 92 (211)
T COG0800 21 GDDVEEALPLAKALIEG--GIPAIEITL---RTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS---P 92 (211)
T ss_pred eCCHHHHHHHHHHHHHc--CCCeEEEec---CCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC---C
Confidence 3444433 345566776 555543221 145567888988889997666677899999999999999999963 4
Q ss_pred CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
|.. -.+++.+. .+|..=||.|.--+..++++|++.+|+=
T Consensus 93 ~~~-----------~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~F 133 (211)
T COG0800 93 GLN-----------PEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFF 133 (211)
T ss_pred CCC-----------HHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeec
Confidence 321 12233332 3566779999999999999999999986
No 145
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.58 E-value=0.27 Score=51.89 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.1
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
.+++-+..+.-.|+.+.++|+|+|-+.
T Consensus 16 ~i~~~tayD~~sArl~e~aG~d~i~vG 42 (264)
T PRK00311 16 KIVMLTAYDYPFAKLFDEAGVDVILVG 42 (264)
T ss_pred CEEEEeCCCHHHHHHHHHcCCCEEEEC
Confidence 466678888999999999999999875
No 146
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.53 E-value=0.2 Score=52.57 Aligned_cols=121 Identities=21% Similarity=0.167 Sum_probs=72.8
Q ss_pred CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-ccceee-ecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 345 ~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
..++...+++.|.=|+|-.-+++|+..+++...++. +..+.. +-.++++++.++.+..-.++.+- +..|..-....+
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s~~G~TG~~~~~ 182 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV-SRAGVTGARNRA 182 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE-ECCCCCCCcccC
Confidence 357899999999999888888888876666543321 222322 22344577777766544466654 334554321111
Q ss_pred ccccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 423 TNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
.......+..+|++... +++||-+.+.+.++ +...|||+|.||.
T Consensus 183 ---~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 183 ---ASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ---ChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 11223345555665443 44555567565555 6799999999984
No 147
>KOG3111|consensus
Probab=95.47 E-value=0.086 Score=52.72 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=71.0
Q ss_pred HHHHHHHcCCeE-EeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC---Ch
Q psy3862 72 MAKHLAKHGLFT-TIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY---TQ 145 (671)
Q Consensus 72 lA~Ala~~gglg-vIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~---~~ 145 (671)
...-++++|.-. ++|.- ..+.+..+.+++.- ..--+.+.+|++.++++.+.+.++ -+.+.+++..+|- .+
T Consensus 79 ~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~G-mk~G~alkPgT~Ve~~~~~~~~~D---~vLvMtVePGFGGQkFme 154 (224)
T KOG3111|consen 79 WVDQMAKAGASLFTFHYEATQKPAELVEKIREKG-MKVGLALKPGTPVEDLEPLAEHVD---MVLVMTVEPGFGGQKFME 154 (224)
T ss_pred HHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcC-CeeeEEeCCCCcHHHHHHhhcccc---EEEEEEecCCCchhhhHH
Confidence 334577777554 47853 23444555554321 111234567888777665544333 2334455555543 36
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+.++.++++|+.||+..+.+-...+.+.+....+|||+++|.++
T Consensus 155 ~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGs 198 (224)
T KOG3111|consen 155 DMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGS 198 (224)
T ss_pred HHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecc
Confidence 67788999999999887744444567888889999999999855
No 148
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.42 E-value=0.39 Score=49.02 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|.+.+-.-.|.. ....+++..+..+. .+| ++|||.+.+.++.++++|||++-+|
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~-----~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAK-----AGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-----cCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 477888889999887553212210 01113343443331 246 7999999999999999999998777
No 149
>PRK02227 hypothetical protein; Provisional
Probab=95.41 E-value=0.098 Score=54.18 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHHHHcCCeEEEc-----------cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE
Q psy3862 340 MDTVGTFEMAKHLAKHGLFTTIH-----------KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML 408 (671)
Q Consensus 340 MDtV~~~~mA~~la~~Gglgvih-----------r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i 408 (671)
.+++-.+++-...++.|.=+++- .|++++++.+|+.+..+.--..+-+|....+|+..|...+.|++=+
T Consensus 128 ~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l~pD~lGf 207 (238)
T PRK02227 128 VGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRLGPDILGV 207 (238)
T ss_pred ccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhcCCCEEEe
Confidence 45677788888888899888876 6999999999998754422233445666789999999999999998
Q ss_pred cccc
Q psy3862 409 GGMF 412 (671)
Q Consensus 409 d~~a 412 (671)
.|-.
T Consensus 208 Rgav 211 (238)
T PRK02227 208 RGAV 211 (238)
T ss_pred chhc
Confidence 8433
No 150
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.37 E-value=0.64 Score=48.86 Aligned_cols=78 Identities=21% Similarity=0.155 Sum_probs=44.8
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcC-----CCceEEEEec-ccCCcchhhhhcc---ccC-----Cc-ccccc---
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIG-----PGSVCTTRLK-NKTSDFFLIQFYS---CIP-----QA-GNVVT--- 223 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga-----~G~~~~t~v~-~~~~~~~~i~~i~---~~p-----~a-GnV~t--- 223 (671)
.+++-+..+.-.|+.+.++|+|+|-+..+ +|+.-+..+. ++ -++-...+. ..| .- |+..+
T Consensus 13 ~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~e--m~~~~~~V~r~~~~p~viaD~~fg~y~~~~~ 90 (254)
T cd06557 13 KIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDE--MIYHTRAVRRGAPRALVVADMPFGSYQTSPE 90 (254)
T ss_pred cEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHH--HHHHHHHHHhcCCCCeEEEeCCCCcccCCHH
Confidence 46667888899999999999999986532 3432000000 00 000000110 123 12 66666
Q ss_pred --HHHHHHHHH-cCCCEEEEc
Q psy3862 224 --GEMVEELIL-SGADVIKVG 241 (671)
Q Consensus 224 --~~~a~~li~-aGAdgvkVG 241 (671)
.+.+..+++ +||+||++=
T Consensus 91 ~av~~a~r~~~~aGa~aVkiE 111 (254)
T cd06557 91 QALRNAARLMKEAGADAVKLE 111 (254)
T ss_pred HHHHHHHHHHHHhCCeEEEEc
Confidence 555677887 999999994
No 151
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.29 E-value=0.25 Score=51.46 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.++|+|.|.+-.-.. .......++.++..+. .+| +.|||-+.+.++.++.+||+++-+|
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~-----~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITA-----SSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCc-----ccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4888888999999885522110 0001112333333332 256 7999999999999999999999888
No 152
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=95.18 E-value=0.2 Score=51.66 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHcCCeEEEc-----------cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 341 DTVGTFEMAKHLAKHGLFTTIH-----------KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 341 DtV~~~~mA~~la~~Gglgvih-----------r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
+++-.+++-...++.|.-+++- .|++++++.+|+....+.--.++-+|....+|+..|...+.|++=+.
T Consensus 129 ~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l~pD~lGfR 208 (235)
T PF04476_consen 129 GSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRLGPDILGFR 208 (235)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhcCCCEEEec
Confidence 4556777777788888887775 69999999999987554333445567778899999999999999998
Q ss_pred ccc
Q psy3862 410 GMF 412 (671)
Q Consensus 410 ~~a 412 (671)
|-.
T Consensus 209 GAv 211 (235)
T PF04476_consen 209 GAV 211 (235)
T ss_pred hhh
Confidence 544
No 153
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.18 E-value=0.14 Score=56.07 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCce-EEEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV-CTTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV 247 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~-~~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~ 247 (671)
+-++.|.++|+|.|-+...- +. .+....+ .-.+++.+...+ ...-+...+++..++++|++.|.+.+...-.
T Consensus 72 ~ia~~L~~~GV~~IEvGs~v-spk~vPqmad---~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~ 147 (347)
T PLN02746 72 ELIQRLVSSGLPVVEATSFV-SPKWVPQLAD---AKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASES 147 (347)
T ss_pred HHHHHHHHcCCCEEEECCCc-Cccccccccc---HHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHH
Confidence 56778999999999886421 11 0110110 000111111111 1122347899999999999999998733322
Q ss_pred cccceecccCcchh-hhHHHHHHHhhhcCCcc
Q psy3862 248 CTTRLKTGVGYPQF-SAVLECADAAHGLGGHI 278 (671)
Q Consensus 248 ~~Tr~V~gv~~~~~-~~~~~~~~~~~~~~~~~ 278 (671)
.. +...+..+.+. .-+.++.+.|+++|.++
T Consensus 148 h~-~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v 178 (347)
T PLN02746 148 FS-KSNINCSIEESLVRYREVALAAKKHSIPV 178 (347)
T ss_pred HH-HHHhCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 21 22233334333 33567888888776543
No 154
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.15 E-value=0.19 Score=51.28 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=73.9
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-----------------Eec
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-----------------NVV 169 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-----------------~v~ 169 (671)
|+.+.-|+ .+.+.+++++.. +++.+++....-. -.+.++++.+.++.-.++.. ...
T Consensus 75 pv~~~GgI--~~~e~~~~~~~~--Gad~vvigs~~l~---dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~ 147 (234)
T cd04732 75 PVQVGGGI--RSLEDIERLLDL--GVSRVIIGTAAVK---NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS 147 (234)
T ss_pred CEEEeCCc--CCHHHHHHHHHc--CCCEEEECchHHh---ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence 55554443 456777777776 7888877655321 13344444444543111111 112
Q ss_pred cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..+.++.+.++|+|.+.+-. ..|+ ...+++.++..+. .+| ++|||.+.+.++.++..||||+-||
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~-------~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGT-------LSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCc-------cCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 34778889999999996632 1111 1113444444442 356 7999999999999999999999998
No 155
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.15 E-value=0.11 Score=52.67 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEE
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 198 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~ 198 (671)
+.++.+.++ +++.+++.... .+ ....+.++..+. + ....+ ..+.+.++++.+.+.|+|.+.+.+..++..
T Consensus 85 ~~v~~~~~~--Gad~v~l~~~~-~~~~~~~~~~~~~~~-~-g~~~~-v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~--- 155 (217)
T cd00331 85 YQIYEARAA--GADAVLLIVAA-LDDEQLKELYELARE-L-GMEVL-VEVHDEEELERALALGAKIIGINNRDLKTF--- 155 (217)
T ss_pred HHHHHHHHc--CCCEEEEeecc-CCHHHHHHHHHHHHH-c-CCeEE-EEECCHHHHHHHHHcCCCEEEEeCCCcccc---
Confidence 466677777 88888876442 22 222333333222 2 12222 234578889999999999997754333211
Q ss_pred ecccCCcchhhhhc-c----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 199 LKNKTSDFFLIQFY-S----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 199 v~~~~~~~~~i~~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+++..+..+ + .+| +.|||.+.+.++.++++||||+-||
T Consensus 156 ----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivG 201 (217)
T cd00331 156 ----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIG 201 (217)
T ss_pred ----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence 0111111111 1 234 6899999999999999999999998
No 156
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.08 E-value=0.21 Score=50.87 Aligned_cols=66 Identities=24% Similarity=0.147 Sum_probs=41.3
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCceEE-EEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSVCT-TRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~~~-t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.+.++.+.++|+|+|++|........ ..+ ..+++.+. .+|..-++.|.+.++.+.++|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~------~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETL------AELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCH------HHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc
Confidence 456899999999999999865431100 000 00111111 1444446788889999999999988553
No 157
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.03 E-value=0.27 Score=49.13 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=41.4
Q ss_pred ChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 391 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+++++.+..++|+|++-+- ......-.+.++.++..+|.+ +=+-+|| +...++...+++||++|=+|.
T Consensus 114 t~~e~~~A~~~Gadyv~~F---pt~~~~G~~~l~~~~~~~~~i-------pvvaiGG-I~~~n~~~~l~aGa~~vav~s 181 (187)
T PRK07455 114 TPTEIVTAWQAGASCVKVF---PVQAVGGADYIKSLQGPLGHI-------PLIPTGG-VTLENAQAFIQAGAIAVGLSG 181 (187)
T ss_pred CHHHHHHHHHCCCCEEEEC---cCCcccCHHHHHHHHhhCCCC-------cEEEeCC-CCHHHHHHHHHCCCeEEEEeh
Confidence 4566666778899999873 111111123334344333322 1144788 477888889999999997764
No 158
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.00 E-value=0.17 Score=52.20 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=48.2
Q ss_pred cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCc--hhHHHHHHcCCcEE
Q psy3862 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSP--GDVAKAMGAGADFV 465 (671)
Q Consensus 388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t--~~~a~~l~aGAd~V 465 (671)
|..++.|+....++|+|++-+= ...+ .-...++.++.-||.+. |+ -.|| |.. .++.+.+.+||.+|
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKlF---PA~~-~G~~~ikal~~p~p~i~----~~---ptGG-V~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKLF---PGSV-YGPGFVKAIKGPMPWTK----IM---PTGG-VEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEEC---cccc-cCHHHHHHHhccCCCCe----EE---eCCC-CCcchhcHHHHHhCCCEEE
Confidence 4456778888889999999875 2221 11344455555555542 12 2567 454 78888999998888
Q ss_pred EECccccCCccCCCcE
Q psy3862 466 MLGGMFAGHDQSGGEL 481 (671)
Q Consensus 466 ~vG~~g~G~s~ctt~~ 481 (671)
=+|. ..++.+.
T Consensus 186 g~Gs-----~L~~~~~ 196 (222)
T PRK07114 186 GMGS-----KLIPKEA 196 (222)
T ss_pred EECh-----hhcCccc
Confidence 5553 5666554
No 159
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=94.99 E-value=0.17 Score=53.94 Aligned_cols=122 Identities=24% Similarity=0.303 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHhCCCceEEEeeccC--C-------CChHHH-HHHHHHHH--hCCCceEEEEEecc---HHHHHHHHHC
Q psy3862 116 AKDLAGLKEILAALPEIEYICLDVAN--G-------YTQTFV-DFVRRIRE--MYPKHVIIAGNVVT---GEMVEELILS 180 (671)
Q Consensus 116 ~~d~~rl~~l~~a~~~~d~Ivld~a~--G-------~~~~~~-~~ik~lr~--~~P~~~li~g~v~t---~e~a~~Li~A 180 (671)
.+|+.++.+.+++ ++|++-+|.+- . ...... +.++.+++ ..|...|+..+... .+.+..+.+.
T Consensus 111 ~~d~~~~a~~~~~--~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~ 188 (295)
T PF01180_consen 111 IEDWAELAKRLEA--GADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAAD 188 (295)
T ss_dssp HHHHHHHHHHHHH--HCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhcC--cCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhcc
Confidence 4555555455554 67888777542 1 111222 22333333 24777788876544 3456667788
Q ss_pred CCcEEEEC----------cCCC-------ce-EE-EEecccCCcchhhhhc----c-ccC--CccccccHHHHHHHHHcC
Q psy3862 181 GADVIKVG----------IGPG-------SV-CT-TRLKNKTSDFFLIQFY----S-CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 181 GaD~IvVd----------ga~G-------~~-~~-t~v~~~~~~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aG 234 (671)
|+|.|+.- .... .. .+ ..+++. .+..+-.+ . .+| ..|||-|++.+...+.+|
T Consensus 189 g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~--aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aG 266 (295)
T PF01180_consen 189 GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI--ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAG 266 (295)
T ss_dssp TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH--HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHT
T ss_pred ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH--HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhC
Confidence 99999731 1100 00 00 001000 01111111 1 245 599999999999999999
Q ss_pred CCEEEEc
Q psy3862 235 ADVIKVG 241 (671)
Q Consensus 235 AdgvkVG 241 (671)
|+.|+|+
T Consensus 267 A~~Vqv~ 273 (295)
T PF01180_consen 267 ASAVQVC 273 (295)
T ss_dssp ESEEEES
T ss_pred CCHheec
Confidence 9999998
No 160
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.97 E-value=0.63 Score=48.35 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHcCCeEEEcc---CCCHHHHHHHHhcCccc-ccceee-ecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862 343 VGTFEMAKHLAKHGLFTTIHK---YYTLEEWKAFAVQNPDV-IKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ 417 (671)
Q Consensus 343 V~~~~mA~~la~~Gglgvihr---~~~~e~~~~~v~~~~~~-~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~ 417 (671)
....+++..+.+.|.-+++-. +.+.|+..+++...++. ++.+.. .-.++.+++..+++..-.++++ ++-.|...
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~ 166 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGV 166 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCC
Confidence 355667999999998888755 33344444444332221 222222 2223457778888877777766 44444432
Q ss_pred cccccccccccccccccccccccCc--e-eeccccCchhH-HHHHHcCCcEEEECc
Q psy3862 418 SGGELTNIEYMFFPLVGDMNSYLGG--V-VDGGCTSPGDV-AKAMGAGADFVMLGG 469 (671)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-i~gG~v~t~~~-a~~l~aGAd~V~vG~ 469 (671)
. + .......+..+|++.++ + ++|| +.+.+. .+++++|||++.||.
T Consensus 167 ~---~---~~~~~~~i~~lr~~~~~~~i~v~gG-I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 167 P---L---PVSVERNIKRVRNLVGNKYLVVGFG-LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred C---c---hHHHHHHHHHHHHhcCCCCEEEeCC-cCCHHHHHHHHHcCCCEEEECH
Confidence 1 1 11222234455665532 3 4555 545544 446799999999984
No 161
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.88 E-value=0.35 Score=49.70 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=73.7
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E-----e-----------c
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N-----V-----------V 169 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~-----v-----------~ 169 (671)
|+.++-|+. +.+.++.++.+ +++.+++..... .-.+.++++.+.|+...++.+ . + .
T Consensus 78 ~l~v~GGi~--~~~~~~~~~~~--Ga~~v~iGs~~~---~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~ 150 (241)
T PRK13585 78 PVQLGGGIR--SAEDAASLLDL--GVDRVILGTAAV---ENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYT 150 (241)
T ss_pred cEEEcCCcC--CHHHHHHHHHc--CCCEEEEChHHh---hChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCC
Confidence 455544553 55667777776 788888764421 112345555555643222221 1 0 2
Q ss_pred cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..+.++.+.++|+|.|.+-. ..|+. ..+++.++..+. .+| ++|||-+.+.+..+..+||+|+-||
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~-------~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGLL-------EGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCc-------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 35778889999999987622 12211 112333333331 356 7999999999999999999999998
No 162
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.83 E-value=0.6 Score=48.39 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=92.5
Q ss_pred HHHHHHHHH-CCCcEEE---ECcC-CCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862 171 GEMVEELIL-SGADVIK---VGIG-PGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 171 ~e~a~~Li~-AGaD~Iv---Vdga-~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
.+.|+.+.+ .|+|-+- +|++ .|+. .++.++.-+. .+| ++|||-+.+.++.++.+||+-+-+
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~---------~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQHA---------REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCCc---------chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEE
Confidence 378888888 6888662 2333 2221 2333333332 246 799999999999999999999977
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~ 320 (671)
| -..+-.|+ .+.+++ +..|-+|+. ++|.++=.+.++-.+-.
T Consensus 105 g-----------t~a~~~~~--~l~~~~---~~fg~~ivv-------------slD~~~g~v~~~gw~~~---------- 145 (234)
T PRK13587 105 G-----------TKGIQDTD--WLKEMA---HTFPGRIYL-------------SVDAYGEDIKVNGWEED---------- 145 (234)
T ss_pred C-----------chHhcCHH--HHHHHH---HHcCCCEEE-------------EEEeeCCEEEecCCccc----------
Confidence 7 22233443 233333 333333333 11111101111000000
Q ss_pred eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC---------CHHHHHHHHhcCcccccceeeeccc-
Q psy3862 321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY---------TLEEWKAFAVQNPDVIKHVADGGCT- 390 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~---------~~e~~~~~v~~~~~~~~~v~~~~~~- 390 (671)
-...-.+++..+.+.|.=.+|.-.. +.+ ..+.+.+..+ ++ +-++|++
T Consensus 146 --------------------~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~-li~~l~~~~~-ip-vi~~GGi~ 202 (234)
T PRK13587 146 --------------------TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE-LTGQLVKATT-IP-VIASGGIR 202 (234)
T ss_pred --------------------CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH-HHHHHHHhCC-CC-EEEeCCCC
Confidence 0112367888888888656665333 233 3333333221 23 4445555
Q ss_pred ChhhHHHHHHcCCcEEEEc
Q psy3862 391 SPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id 409 (671)
+++|+.++.++|+|-+++-
T Consensus 203 s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 203 HQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CHHHHHHHHHcCCCEEEEh
Confidence 6799999999999999986
No 163
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.79 E-value=0.17 Score=52.48 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=26.4
Q ss_pred ceEecCCCCCCCHHHHHHHHHcCCeEEE
Q psy3862 334 PIIAANMDTVGTFEMAKHLAKHGLFTTI 361 (671)
Q Consensus 334 PiIaa~MDtV~~~~mA~~la~~Gglgvi 361 (671)
||+=|||=.+|+.+++.++++++|+++|
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~ 28 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFL 28 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEE
Confidence 7888999999999999999999999988
No 164
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.75 E-value=0.4 Score=50.35 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=76.4
Q ss_pred cCceEEecCCCcccc------HHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcc-cccce-EEecCCChhhHHHHHHHH
Q psy3862 55 QGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHV-AVSSGISAKDLAGLKEIL 126 (671)
Q Consensus 55 l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~-~~~~~-~v~~G~~~~d~~rl~~l~ 126 (671)
.++|++ -|.+... .+....++++|.-|+|=.-.++|+..++...... -..++ .+++..+ .+|+..+.
T Consensus 86 ~~~plv--~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~---~eri~~i~ 160 (256)
T TIGR00262 86 PNIPIG--LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD---DERLKQIA 160 (256)
T ss_pred CCCCEE--EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC---HHHHHHHH
Confidence 467877 5666433 6778888888888874446677765444422111 11222 2333333 45776776
Q ss_pred HhCCCceE-EEeeccCC----CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 127 AALPEIEY-ICLDVANG----YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 127 ~a~~~~d~-Ivld~a~G----~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
...++-.. +.+....| ......+.++++|+..+.-..+.+.+.+++.++.+.++|||.+++.+
T Consensus 161 ~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 161 EKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 65332222 23221112 23457788888877543323344467789999999999999998843
No 165
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.75 E-value=0.71 Score=48.22 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCcEEEE-CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKV-GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvV-dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|.|.+ |.... .....+++.++..+. .+| ++|||-+.+.++.++.+||+++-||
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~------~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS------SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc------cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47888888999987744 22110 001112333333331 246 7999999999999999999999888
No 166
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.60 E-value=0.89 Score=46.72 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|.+.+---.+. ..........+..+ . .+| +.|||-|.+.++.++++|||+|-+|
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-----~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-----FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-----hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 47888899999998843111100 00001122222222 2 245 7999999999999999999999887
No 167
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.6 Score=50.43 Aligned_cols=125 Identities=25% Similarity=0.342 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHH-hCCCceEEEeeccCCC----------ChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHHHHCC
Q psy3862 116 AKDLAGLKEILA-ALPEIEYICLDVANGY----------TQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEELILSG 181 (671)
Q Consensus 116 ~~d~~rl~~l~~-a~~~~d~Ivld~a~G~----------~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~Li~AG 181 (671)
.++++.....++ +.+ ++++.++.+--| ++.+-+.++.+++. .|...|++-++. ..+-|+.+.++|
T Consensus 108 ~~~~~d~~~~~~~~~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g 186 (310)
T COG0167 108 EEAWADYARLLEEAGD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcC
Confidence 344544444444 333 788877754211 12233334444432 588888887553 357889999999
Q ss_pred CcEEEECc--CCCc-eEEEE----ecccC-----C-----cchhhhh-cc----ccC--CccccccHHHHHHHHHcCCCE
Q psy3862 182 ADVIKVGI--GPGS-VCTTR----LKNKT-----S-----DFFLIQF-YS----CIP--QAGNVVTGEMVEELILSGADV 237 (671)
Q Consensus 182 aD~IvVdg--a~G~-~~~t~----v~~~~-----~-----~~~~i~~-i~----~~p--~aGnV~t~~~a~~li~aGAdg 237 (671)
+|.|++-- -.+. +.... .+... + .+..+.. .+ .+| -.|||-|.+.|..-|.|||+.
T Consensus 187 ~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~ 266 (310)
T COG0167 187 ADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASA 266 (310)
T ss_pred CcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCch
Confidence 99997622 1111 10000 00000 0 1111111 11 255 499999999999999999999
Q ss_pred EEEc
Q psy3862 238 IKVG 241 (671)
Q Consensus 238 vkVG 241 (671)
|+||
T Consensus 267 vQv~ 270 (310)
T COG0167 267 VQVG 270 (310)
T ss_pred heee
Confidence 9998
No 168
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=94.48 E-value=0.03 Score=63.21 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=62.5
Q ss_pred ccCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccccccccccccccc----------c
Q psy3862 362 HKYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELTNI----------E 426 (671)
Q Consensus 362 hr~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~gh~~~~~~~~~~----------~ 426 (671)
|-.||+||++.+|.+++++-+ .++-+....-+.++. ..+|+||+|+|||.--|---++...++. .
T Consensus 282 HDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae 361 (485)
T COG0069 282 HDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAE 361 (485)
T ss_pred ccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHH
Confidence 457899999999988766421 222233334466666 4789999999997432221111111100 0
Q ss_pred ccccccccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 427 YMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 427 ~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
-.+.=....+|..+.=.++||.....++++++..|||.|..|
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~g 403 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFG 403 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhc
Confidence 000001111222222267899999999999999999998655
No 169
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.43 E-value=0.07 Score=57.01 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccC--Ccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIP--QAGNV 221 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p--~aGnV 221 (671)
+.+.++.+|+..|...++.-.+.+.+++..++++|+|+|-+|--.-.. +...+++..++ +| +.|||
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~---------i~leAsGGI 252 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPR---------VKIEASGNI 252 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCC---------eEEEEECCC
Confidence 556677777777755677778889999999999999999988311100 01111111121 23 79999
Q ss_pred ccHHHHHHHHHcCCCEEEEc
Q psy3862 222 VTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 222 ~t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.++.++|+|+|=+|
T Consensus 253 -t~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSS 271 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEc
Confidence 8999999999999999777
No 170
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.43 E-value=1 Score=48.86 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.3
Q ss_pred CchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862 450 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 450 ~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
++.+.++.+-.-.++..+|| |+| .-|.+++.
T Consensus 204 Vp~~la~~It~~l~IPtIGI-GAG-~~cDGQVL 234 (332)
T PLN02424 204 VPAPVAAAITSALQIPTIGI-GAG-PFCSGQVL 234 (332)
T ss_pred CcHHHHHHHHHhCCCCEEee-cCC-CCCCceeE
Confidence 56668888877789999996 999 88998864
No 171
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.24 E-value=1.2 Score=45.93 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCcEEEE-CcC-CCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKV-GIG-PGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvV-dga-~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.++|+|.|.+ |.. .|.. ..+++.++..+. .+| +.|||.+.+.++.++..|||++-+|
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~-------~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEG-------RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCccccc-------CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 47888999999994432 221 2211 112333443342 246 7999999999999999999999887
No 172
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.23 E-value=0.19 Score=52.22 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=46.8
Q ss_pred eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862 168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvk 239 (671)
..+...+++|.++|+|+|-.-+ +.|.. + .+.+.+..+. .+| +.|||.|.+.++.++++|||||-
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGsg~G----i----~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVl 202 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGSGQG----L----LNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCCCC----C----CCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4678999999999999994422 22211 1 1122223332 245 79999999999999999999998
Q ss_pred Ec
Q psy3862 240 VG 241 (671)
Q Consensus 240 VG 241 (671)
||
T Consensus 203 V~ 204 (248)
T cd04728 203 LN 204 (248)
T ss_pred EC
Confidence 88
No 173
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.06 E-value=0.21 Score=51.99 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=47.1
Q ss_pred eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862 168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvk 239 (671)
..+...+++|.++|+|+|---+ +.|.. +. +.+.++.+. .+| +.|||.|.+.+..++++|||||-
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGsg~g----i~----~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGSGLG----LL----NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCCCC----CC----CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4678999999999999994422 22211 11 112233332 245 79999999999999999999998
Q ss_pred Ec
Q psy3862 240 VG 241 (671)
Q Consensus 240 VG 241 (671)
||
T Consensus 203 V~ 204 (250)
T PRK00208 203 LN 204 (250)
T ss_pred EC
Confidence 88
No 174
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=93.98 E-value=1.1 Score=47.77 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=41.2
Q ss_pred eccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEE
Q psy3862 168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvk 239 (671)
+.....++.|.++|||+| |. +.++. |.-.++..++ ..|..-++.|-+-++..++.|||-|+
T Consensus 76 igh~~Ea~~L~~~GvDiI--De------Te~lr---Pade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 76 IGHFVEAQILEALGVDYI--DE------SEVLT---PADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred ccHHHHHHHHHHcCCCEE--Ec------cCCCC---cHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEe
Confidence 344788999999999999 31 11111 2111111222 35777889999999999999999884
No 175
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.92 E-value=0.56 Score=47.90 Aligned_cols=122 Identities=20% Similarity=0.325 Sum_probs=69.1
Q ss_pred cceEEecCCChhhHHHHHHHHHhCCCceEEEeecc-CCCChHHHHHHHHHHHhCCCceEEE-----EE-----------e
Q psy3862 106 KHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA-NGYTQTFVDFVRRIREMYPKHVIIA-----GN-----------V 168 (671)
Q Consensus 106 ~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a-~G~~~~~~~~ik~lr~~~P~~~li~-----g~-----------v 168 (671)
.|+.++-|+ .+.+.++.+... +++.+++... ...+..+.+..+... +...++. +. .
T Consensus 73 ~pi~~ggGI--~~~ed~~~~~~~--Ga~~vvlgs~~l~d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~ 145 (230)
T TIGR00007 73 VPVQVGGGI--RSLEDVEKLLDL--GVDRVIIGTAAVENPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEV 145 (230)
T ss_pred CCEEEeCCc--CCHHHHHHHHHc--CCCEEEEChHHhhCHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCC
Confidence 355554444 455666666666 7777766533 222333333343321 1111110 00 1
Q ss_pred ccHHHHHHHHHCCCcEEEE-Cc-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 169 VTGEMVEELILSGADVIKV-GI-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 169 ~t~e~a~~Li~AGaD~IvV-dg-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
...+.++.+.+.|+|.+.+ |. ..|. ...+++.++..+. .+| ++|||.+.+.++.++++||||+-||
T Consensus 146 ~~~~~~~~~~~~g~~~ii~~~~~~~g~-------~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 146 SLEELAKRLEELGLEGIIYTDISRDGT-------LSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecCCCC-------cCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 1246788899999996653 22 1111 0113333333332 356 7999999999999999999999998
No 176
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.70 E-value=0.96 Score=46.14 Aligned_cols=122 Identities=19% Similarity=0.287 Sum_probs=70.4
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEE----------------ecc
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN----------------VVT 170 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~----------------v~t 170 (671)
|+.++-|+ .+.+.++.++.. +++.+++..+.-. -.+.++++.+.||....+.=. ...
T Consensus 76 pv~~~GGI--~~~ed~~~~~~~--Ga~~vilg~~~l~---~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~ 148 (233)
T PRK00748 76 PVQVGGGI--RSLETVEALLDA--GVSRVIIGTAAVK---NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA 148 (233)
T ss_pred CEEEcCCc--CCHHHHHHHHHc--CCCEEEECchHHh---CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence 55554444 356666677666 6777777644211 122344443344432111101 012
Q ss_pred HHHHHHHHHCCCcEEEEC-c-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEcc
Q psy3862 171 GEMVEELILSGADVIKVG-I-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVGI 242 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVd-g-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG~ 242 (671)
.+.++.+.+.|+|.|.+- . ..| ....+++.++..+. .+| ++|||.|.+.++.+++.| |||+-||-
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g-------~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDG-------TLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcC-------CcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 577888999999965442 1 111 11123444444442 245 799999999999999998 99999993
No 177
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=93.52 E-value=1.4 Score=45.70 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCcEE-EEC--cCCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVI-KVG--IGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~I-vVd--ga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.|+.+.+.|+|-| ++| ++.|+. +++.++.-+ . .+| ++|||-+.+.++.++.+||+-+-+|
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~---------~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRG---------SNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIG 104 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCC---------ccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 478888889999854 333 333321 233333333 2 256 7999999999999999999965444
No 178
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.44 E-value=0.88 Score=47.44 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=47.8
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcCCCce----EEE-E---------ecccCCcchhhhhccccCCc-ccc--ccH
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSV----CTT-R---------LKNKTSDFFLIQFYSCIPQA-GNV--VTG 224 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~----~~t-~---------v~~~~~~~~~i~~i~~~p~a-GnV--~t~ 224 (671)
.+++-++.+.-.|+.+.++|+|+|-+.++.+.. ..+ . ++......+.++++.++|-+ |+- -..
T Consensus 13 ~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~ 92 (240)
T cd06556 13 RFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAF 92 (240)
T ss_pred eEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHH
Confidence 466667888899999999999999998843321 000 0 00000001111223344522 332 345
Q ss_pred HHHHHHHHcCCCEEEEc
Q psy3862 225 EMVEELILSGADVIKVG 241 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG 241 (671)
+.++.++++||+||++=
T Consensus 93 ~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 93 ELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHcCCcEEEEc
Confidence 66899999999999994
No 179
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.36 E-value=0.1 Score=53.02 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCeEEEcc---CCCHHHHHHHHhc-CcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 347 EMAKHLAKHGLFTTIHK---YYTLEEWKAFAVQ-NPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 347 ~mA~~la~~Gglgvihr---~~~~e~~~~~v~~-~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
+++.+|. .||+.+|-- .....+..+.+++ .|+ -.+.+..+.+.++++.++++|++||+=- +.+..+++.
T Consensus 24 ~~~~al~-~~Gi~~iEit~~t~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~aGA~FivsP----~~~~~v~~~ 96 (204)
T TIGR01182 24 PLAKALI-EGGLRVLEVTLRTPVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVDAGAQFIVSP----GLTPELAKH 96 (204)
T ss_pred HHHHHHH-HcCCCEEEEeCCCccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHHcCCCEEECC----CCCHHHHHH
Confidence 4444544 356666653 3333333444432 233 2355556668899999999999999833 222222222
Q ss_pred ccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 423 TNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
- +++= -.+.-|+..+.|+.+++++|||.||+ +|.
T Consensus 97 ~-------------~~~~-i~~iPG~~TptEi~~A~~~Ga~~vKl---FPA 130 (204)
T TIGR01182 97 A-------------QDHG-IPIIPGVATPSEIMLALELGITALKL---FPA 130 (204)
T ss_pred H-------------HHcC-CcEECCCCCHHHHHHHHHCCCCEEEE---CCc
Confidence 1 1110 11234778999999999999999998 676
No 180
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=93.31 E-value=1.6 Score=45.02 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCcEEEE---CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKV---GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvV---dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.|+.+.+.|+|-+-+ |++.|+ -+++.++.-+. .+| ++|||-+.+.++.++.+||+-+-+|
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~~~---------~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viig 107 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIMGR---------GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVG 107 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccccCC---------CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEc
Confidence 47889999999987632 222222 12333443332 246 7999999999999999999988777
No 181
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.24 E-value=1.6 Score=46.35 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=40.8
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEE
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvk 239 (671)
....++.|.++|||+| | . +.+.+ |.-.++..++ ..|.--++.|.+-+++++++|||-|+
T Consensus 76 ~~~Ea~~L~eaGvDiI--D---a---T~r~r---P~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 76 HFVEAQILEALGVDMI--D---E---SEVLT---PADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHHHHcCCCEE--e---c---cCCCC---cHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEE
Confidence 3688999999999999 3 1 11111 2112233332 25678889999999999999999873
No 182
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.21 E-value=0.94 Score=46.38 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=73.1
Q ss_pred cceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E-----------------
Q psy3862 106 KHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N----------------- 167 (671)
Q Consensus 106 ~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~----------------- 167 (671)
.|+.++-|+ +..+.+.++... +++.+++..+- ..-.+.++++.+.|+...++.. .
T Consensus 75 ~pv~~~ggi--~~~~d~~~~~~~--G~~~vilg~~~---l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~ 147 (232)
T TIGR03572 75 MPLTVGGGI--RSLEDAKKLLSL--GADKVSINTAA---LENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNG 147 (232)
T ss_pred CCEEEECCC--CCHHHHHHHHHc--CCCEEEEChhH---hcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCC
Confidence 355554444 345556666665 67777776442 1112455555555643322211 0
Q ss_pred -----eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHH-HHHcC
Q psy3862 168 -----VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEE-LILSG 234 (671)
Q Consensus 168 -----v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~-li~aG 234 (671)
....+.++.+.++|+|.|.+.+ ..|+ ...+++..+..+. .+| ++|||.+.+.++. +..+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-------~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~g 220 (232)
T TIGR03572 148 RRATGRDPVEWAREAEQLGAGEILLNSIDRDGT-------MKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAG 220 (232)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC-------cCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 0124778999999999998865 2221 1113343433332 356 7999999999999 88899
Q ss_pred CCEEEEc
Q psy3862 235 ADVIKVG 241 (671)
Q Consensus 235 AdgvkVG 241 (671)
||||-||
T Consensus 221 adgV~vg 227 (232)
T TIGR03572 221 ASAVAAA 227 (232)
T ss_pred CCEEEEe
Confidence 9999998
No 183
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.06 E-value=1.3 Score=46.05 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=66.9
Q ss_pred CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-cccee-eecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 345 ~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
..++...+++.|.=|++---.++|+...++...++. ++.+. .+-.++++++..+.+...|++.+-++.-++..+. ..
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~-~~ 171 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGART-EL 171 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCcc-CC
Confidence 367899999999988887555667655555443321 22222 2223445778888876777776652222221111 00
Q ss_pred ccccccccccccccccccCc-eeeccccCch-hHHHHHHcCCcEEEECc
Q psy3862 423 TNIEYMFFPLVGDMNSYLGG-VVDGGCTSPG-DVAKAMGAGADFVMLGG 469 (671)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~-~~a~~l~aGAd~V~vG~ 469 (671)
.......+..+|++..- +++||-+.+. ++.++..+ ||++.||.
T Consensus 172 ---~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 172 ---PDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred ---ChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 01111234445555322 4445546767 55556788 99999984
No 184
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.02 E-value=1.5 Score=46.32 Aligned_cols=127 Identities=19% Similarity=0.233 Sum_probs=77.3
Q ss_pred cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceE-EecCCChhhHHHHHHHH
Q psy3862 55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-VSSGISAKDLAGLKEIL 126 (671)
Q Consensus 55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~-v~~G~~~~d~~rl~~l~ 126 (671)
.++|++ =|++.. ..+.....+++|-=|+|=.-.++||..++..... .-+.++. +++..+ .+|++.+.
T Consensus 90 ~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~---~eri~~i~ 164 (263)
T CHL00200 90 IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS---KSRIQKIA 164 (263)
T ss_pred CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHH
Confidence 567977 587743 3567776788887798666888888655543211 1122332 333333 45777776
Q ss_pred HhCCCceEEEeeccCCC-------ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 127 AALPEIEYICLDVANGY-------TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 127 ~a~~~~d~Ivld~a~G~-------~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+...+ ++.+-...|. ...+.+.++++|+.. +..+++| .|.+++.++.+.++|||.+++++
T Consensus 165 ~~a~g--FIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 165 RAAPG--CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HhCCC--cEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 65322 3322112222 355667777777643 3334445 67889999999999999999854
No 185
>PLN02591 tryptophan synthase
Probab=92.95 E-value=1.5 Score=46.12 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=79.5
Q ss_pred cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceEE-ecCCChhhHHHHHHHH
Q psy3862 55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVAV-SSGISAKDLAGLKEIL 126 (671)
Q Consensus 55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~v-~~G~~~~d~~rl~~l~ 126 (671)
.++|++ =|++.. ..++...++++|--|+|=.-+++||..++..+.. .-+.++.+ ++..+ .+|++.+.
T Consensus 77 ~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~---~~ri~~ia 151 (250)
T PLN02591 77 LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP---TERMKAIA 151 (250)
T ss_pred CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHH
Confidence 567977 577743 3567776777877798777889988766653321 11223332 22222 45777776
Q ss_pred HhCCCceE-EEeeccCC----CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 127 AALPEIEY-ICLDVANG----YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 127 ~a~~~~d~-Ivld~a~G----~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+..++--. +......| .+....+.++++|+ +++..+++| .+.++++++++.+.|||.++|.+
T Consensus 152 ~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 152 EASEGFVYLVSSTGVTGARASVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 66443222 22221112 24556666777776 355667777 46779999999999999999843
No 186
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=92.86 E-value=3.2 Score=42.32 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|.+.+=--.+. ......++..+..+. .+| +.|||.+.+.++.++++|||.+-+|
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-----~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-----KEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-----ccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 47788888899987754111110 001112333333331 245 7999999999999999999999666
No 187
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=2.9 Score=46.04 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=42.3
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCcc
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPD 379 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~ 379 (671)
++|+..|..=+|++.+-|..+.++|.--+++ |-.|.++..+..++.|+
T Consensus 113 ~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~ 161 (347)
T COG0826 113 DLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPD 161 (347)
T ss_pred CCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCC
Confidence 5899999999999999999999999766655 88999999998888764
No 188
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.75 E-value=5.3 Score=40.85 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCcE---EEECcCC-CceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADV---IKVGIGP-GSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~---IvVdga~-G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|- +.+++.+ ++ .+++.++..+. .+| ++||+-+.+.++.++.+|++++-+|
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47788888899993 3333321 11 12333333331 245 7999999999999999999999888
No 189
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=92.62 E-value=0.68 Score=47.33 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=115.5
Q ss_pred ecCCChhhHHHHHHHHHhC--CCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 111 SSGISAKDLAGLKEILAAL--PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 111 ~~G~~~~d~~rl~~l~~a~--~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
..|++.-|.+.+..+..+. -+++++-+ + -..++++.++.+. ..| +|-....++..-..++||||.|-++
T Consensus 18 IsGLnNFd~~~V~~i~~AA~~ggAt~vDI--A--adp~LV~~~~~~s-~lP----ICVSaVep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 18 ISGLNNFDAESVAAIVKAAEIGGATFVDI--A--ADPELVKLAKSLS-NLP----ICVSAVEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred eeCccccCHHHHHHHHHHHHccCCceEEe--c--CCHHHHHHHHHhC-CCC----eEeecCCHHHHHHHHHhCCCEEEec
Confidence 3466555666666666551 23444333 3 1244555555421 123 3444456788888999999999986
Q ss_pred c-----CCCce--------EEEEecccCCcchhhhhccccCCccccccH-HHHHHHHHcCCCEEEEcccCCCccccceec
Q psy3862 189 I-----GPGSV--------CTTRLKNKTSDFFLIQFYSCIPQAGNVVTG-EMVEELILSGADVIKVGIGPGSVCTTRLKT 254 (671)
Q Consensus 189 g-----a~G~~--------~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~-~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~ 254 (671)
- ++|.. .+++.++..|+.++ ..-+|.-=..-.. +=+.+|.++|||-++===|.-|.++.--+.
T Consensus 89 NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~L---sVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l 165 (242)
T PF04481_consen 89 NFDSFYAQGRRFSAEEVLALTRETRSLLPDITL---SVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL 165 (242)
T ss_pred chHHHHhcCCeecHHHHHHHHHHHHHhCCCCce---EEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH
Confidence 6 66653 12223333343221 1112311111111 235567789999999877778888776666
Q ss_pred cc---CcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862 255 GV---GYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ 331 (671)
Q Consensus 255 gv---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~ 331 (671)
|. -.|.++|.|+.+++ .
T Consensus 166 glIekaapTLAaay~ISr~------------------------------------------------------------v 185 (242)
T PF04481_consen 166 GLIEKAAPTLAAAYAISRA------------------------------------------------------------V 185 (242)
T ss_pred HHHHHHhHHHHHHHHHHhc------------------------------------------------------------c
Confidence 54 25666666655532 3
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeE---EEccCCCHHHHHHHHhcC
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFT---TIHKYYTLEEWKAFAVQN 377 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglg---vihr~~~~e~~~~~v~~~ 377 (671)
++|||.|.==+-.|..||++.+-. |.| +|+|..+.....+.+++.
T Consensus 186 ~iPVlcASGlS~vT~PmAiaaGAs-GVGVGSavn~Ln~~~aMva~vr~l 233 (242)
T PF04481_consen 186 SIPVLCASGLSAVTAPMAIAAGAS-GVGVGSAVNRLNDEVAMVAAVRSL 233 (242)
T ss_pred CCceEeccCcchhhHHHHHHcCCc-ccchhHHhhhcccHHHHHHHHHHH
Confidence 589998877777888999986543 333 467888888888877654
No 190
>PRK07695 transcriptional regulator TenI; Provisional
Probab=92.60 E-value=0.51 Score=47.37 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=53.8
Q ss_pred HHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccH
Q psy3862 152 RRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTG 224 (671)
Q Consensus 152 k~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~ 224 (671)
+++++.+|. .+++..+.+.+.++.+.++|+|++..+--.. +..++..+ .+..+..+. .+| +.||| +.
T Consensus 87 ~~~r~~~~~-~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~----t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~ 160 (201)
T PRK07695 87 RSVREKFPY-LHVGYSVHSLEEAIQAEKNGADYVVYGHVFP----TDCKKGVPARGLEELSDIARALSIPVIAIGGI-TP 160 (201)
T ss_pred HHHHHhCCC-CEEEEeCCCHHHHHHHHHcCCCEEEECCCCC----CCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CH
Confidence 444555674 3455577888899999999999997632111 11111111 111222221 256 79999 89
Q ss_pred HHHHHHHHcCCCEEEEc
Q psy3862 225 EMVEELILSGADVIKVG 241 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG 241 (671)
+.+.+++++|||+|-||
T Consensus 161 ~~~~~~~~~Ga~gvav~ 177 (201)
T PRK07695 161 ENTRDVLAAGVSGIAVM 177 (201)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 99999999999999777
No 191
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.59 E-value=3.5 Score=41.42 Aligned_cols=157 Identities=24% Similarity=0.194 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHcC--CeEEeecC-----CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862 68 GTFEMAKHLAKHG--LFTTIHKY-----YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA 140 (671)
Q Consensus 68 t~~~lA~Ala~~g--glgvIh~n-----~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a 140 (671)
+..+-+....+.| -+|+++.. .++++..+.....+.....+.+.+.. +.+.+.++... .+.+.+.+.
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~---~~~~i~~ia~~-~~~d~Vqlh-- 80 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE---DLEEILEIAEE-LGLDVVQLH-- 80 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC---CHHHHHHHHHh-cCCCEEEEC--
Confidence 3444444444554 45888754 33333222222222212334432222 23444444332 156777764
Q ss_pred CCCChHHHHHHHHHHHhCCCceEEEEEeccHHH--HHHHHHCCCcEEEECcCC-----CceEEEEecccCCcchhhhhcc
Q psy3862 141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEM--VEELILSGADVIKVGIGP-----GSVCTTRLKNKTSDFFLIQFYS 213 (671)
Q Consensus 141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~--a~~Li~AGaD~IvVdga~-----G~~~~t~v~~~~~~~~~i~~i~ 213 (671)
+.. -.+.++.+++.++...+.+-.+.+... +......|+|++.+|+.. |+.... +..++.-+.
T Consensus 81 -g~e--~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~-------~~~~l~~~~ 150 (203)
T cd00405 81 -GDE--SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTF-------DWSLLRGLA 150 (203)
T ss_pred -CCC--CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceE-------ChHHhhccc
Confidence 221 134455555443322221112322222 223445799999999932 222111 111111111
Q ss_pred -ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 214 -CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 214 -~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
.+| ++||+ |.+.+..+++.| ++|+=|.
T Consensus 151 ~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~ 181 (203)
T cd00405 151 SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcC
Confidence 345 79999 999999999999 9999876
No 192
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.57 E-value=0.88 Score=48.61 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred HHHHHHHHCCCcEEEECcCCCce-EEEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV-CTTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV 247 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~-~~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~ 247 (671)
+-++.|.++|+|.|-+.+-. +. ......+ ....+..+...| ...=+...++...++++|+|.|++.+.....
T Consensus 30 ~ia~~L~~~Gv~~IEvgsf~-~p~~~p~~~d---~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~ 105 (287)
T PRK05692 30 ALIDRLSAAGLSYIEVASFV-SPKWVPQMAD---AAEVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEA 105 (287)
T ss_pred HHHHHHHHcCCCEEEeCCCc-Cccccccccc---HHHHHHhhhccCCCeEEEEecCHHHHHHHHHcCCCEEEEEEecCHH
Confidence 56788999999999886211 00 0000000 000111111111 1222346888899999999999998644433
Q ss_pred cccceecccCcch-hhhHHHHHHHhhhcCCcch
Q psy3862 248 CTTRLKTGVGYPQ-FSAVLECADAAHGLGGHII 279 (671)
Q Consensus 248 ~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~~~~ 279 (671)
. .+...+..+.+ +..+.++.++|+++|.++.
T Consensus 106 ~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 106 F-SQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred H-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3 23355566666 4456677888887775543
No 193
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.56 E-value=1.9 Score=46.09 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=29.4
Q ss_pred eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCH
Q psy3862 40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTL 91 (671)
Q Consensus 40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~ 91 (671)
||++++ .+++|+-||+.++-......+....+... |+|. +=+..++
T Consensus 1 ~l~~~~-----~Gl~l~nPi~~aag~~~~~~~~~~~~~~~-G~Gavv~kti~~ 47 (299)
T cd02940 1 DLSVTF-----CGIKFPNPFGLASAPPTTSYPMIRRAFEA-GWGGAVTKTLGL 47 (299)
T ss_pred CCceEE-----CCEEcCCCCEeCCcCCCCCHHHHHHHHHh-CCCEEEeccccC
Confidence 577888 48999999999985544455544445555 6654 3334443
No 194
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.55 E-value=1.3 Score=45.30 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=45.8
Q ss_pred hCCCceEEEEEec--cHHHHHHHHHCCCcEEEECc-CCCce-EEEEecccCCcchhhhhccccCCccccccHHHHHHHHH
Q psy3862 157 MYPKHVIIAGNVV--TGEMVEELILSGADVIKVGI-GPGSV-CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELIL 232 (671)
Q Consensus 157 ~~P~~~li~g~v~--t~e~a~~Li~AGaD~IvVdg-a~G~~-~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~ 232 (671)
.+|...++.+.-. ....+++|++.|.++|-|-= ++.-. .++.+++++|+. +.=||-|.|.+++.++++
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~--------lIGAGTVL~~~q~~~a~~ 83 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEA--------LIGAGTVLNPEQARQAIA 83 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCccc--------EEccccccCHHHHHHHHH
Confidence 3566556655432 24667899999999996622 11100 111222222210 114999999999999999
Q ss_pred cCCCEE
Q psy3862 233 SGADVI 238 (671)
Q Consensus 233 aGAdgv 238 (671)
+||+-+
T Consensus 84 aGa~fi 89 (211)
T COG0800 84 AGAQFI 89 (211)
T ss_pred cCCCEE
Confidence 999987
No 195
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.49 E-value=3.4 Score=42.80 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=94.7
Q ss_pred HHHHHHHHHCCCcEEE---ECcCCCceEEEEecccCCcchhhhhc-c-c-cC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862 171 GEMVEELILSGADVIK---VGIGPGSVCTTRLKNKTSDFFLIQFY-S-C-IP--QAGNVVTGEMVEELILSGADVIKVGI 242 (671)
Q Consensus 171 ~e~a~~Li~AGaD~Iv---Vdga~G~~~~t~v~~~~~~~~~i~~i-~-~-~p--~aGnV~t~~~a~~li~aGAdgvkVG~ 242 (671)
.+.|+.+.+.|+|-+- +|++.|+. ++..++.-+ . + .| ++|||-|.+.++.++++||+-|-+|
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~~~~---------~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvig- 102 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAEGVG---------NNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFS- 102 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcCCCc---------chHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEEC-
Confidence 4788888899998652 23333321 222333222 2 2 25 7999999999999999999998777
Q ss_pred cCCCccccceecccCcchhhhHHHHHHHhhhcC-CcchhhhhhccceeeccccCCC-ceeeeecCCCccCCCCcccceee
Q psy3862 243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG-GHIISFLTAMAQKIINDIKLDF-KDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~l~f-dDVll~P~rst~~sr~eVdl~~~ 320 (671)
-..+-.|.+ + .++++.+| -+|+. ++|+ ++=.+.+..
T Consensus 103 ----------t~a~~~p~~--~---~~~~~~~g~~~ivv-------------slD~~~~~~v~~~g-------------- 140 (232)
T PRK13586 103 ----------TIVFTNFNL--F---HDIVREIGSNRVLV-------------SIDYDNTKRVLIRG-------------- 140 (232)
T ss_pred ----------chhhCCHHH--H---HHHHHHhCCCCEEE-------------EEEcCCCCEEEccC--------------
Confidence 233335532 2 33344443 22322 1222 111111111
Q ss_pred eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc---------cCCCHHHHHHHHhcCcccccceeeeccc-
Q psy3862 321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH---------KYYTLEEWKAFAVQNPDVIKHVADGGCT- 390 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih---------r~~~~e~~~~~v~~~~~~~~~v~~~~~~- 390 (671)
|.. ....-.+++..+.++|.=.+|. .-.++|- .+.+.+.+. . +-++||+
T Consensus 141 ---------w~~--------~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el-~~~~~~~~~--~-viasGGv~ 199 (232)
T PRK13586 141 ---------WKE--------KSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNV-KDYARLIRG--L-KEYAGGVS 199 (232)
T ss_pred ---------Cee--------CCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHH-HHHHHhCCC--C-EEEECCCC
Confidence 000 1123357888888887655555 3455553 555554443 2 3446666
Q ss_pred ChhhHHHHHHcCCcEEEEc
Q psy3862 391 SPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id 409 (671)
+.+|+.++.++|+|-..+-
T Consensus 200 s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 200 SDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred CHHHHHHHHHCCCCEEEEe
Confidence 4699999999999988876
No 196
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.45 E-value=1.5 Score=45.53 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=70.1
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEE---E--EEe----------ccH
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVII---A--GNV----------VTG 171 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li---~--g~v----------~t~ 171 (671)
|+.++-|+ +..+.++.++.. +++-+++.++-- .-.++++++-+.|+.-..+ . +.+ ...
T Consensus 77 pv~vgGGi--rs~edv~~~l~~--Ga~kvviGs~~l---~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~ 149 (241)
T PRK14024 77 KVELSGGI--RDDESLEAALAT--GCARVNIGTAAL---ENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW 149 (241)
T ss_pred CEEEcCCC--CCHHHHHHHHHC--CCCEEEECchHh---CCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence 45554455 456777777776 777776654421 1122333333233321111 0 111 124
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH---cCCCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL---SGADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~---aGAdgvkVG 241 (671)
+.++.+.++|++.|.+-. .+..-...-+++.++..+. .+| ++|||.+.+.++.+.. .|||||-+|
T Consensus 150 ~~~~~l~~~G~~~iiv~~-----~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTD-----VTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred HHHHHHHhcCCCEEEEEe-----ecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEe
Confidence 778889999999887632 1100001124544444442 356 7999999999999864 599999998
No 197
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=92.43 E-value=0.24 Score=52.54 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc-CCCce--EEEEecccCCcchhhhhccccC--Cccccc
Q psy3862 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI-GPGSV--CTTRLKNKTSDFFLIQFYSCIP--QAGNVV 222 (671)
Q Consensus 148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~--~~t~v~~~~~~~~~i~~i~~~p--~aGnV~ 222 (671)
.+.+++.|+.+|.. ++.-.+.+.+.+..+.++|+|+|.+|- .+... ....++..++ .+| +.|||
T Consensus 171 ~~av~~~R~~~~~~-~IgVev~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~---------~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEK-KIVVEVDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAP---------PVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCC-eEEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCC---------CceEEEECCC-
Confidence 56677777767754 555577889999989999999998874 11100 0000111111 134 78999
Q ss_pred cHHHHHHHHHcCCCEEEE
Q psy3862 223 TGEMVEELILSGADVIKV 240 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkV 240 (671)
|.+.+.++.++|||++-+
T Consensus 240 ~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 240 NIENAAAYAAAGADILVT 257 (272)
T ss_pred CHHHHHHHHHcCCcEEEE
Confidence 999999999999999933
No 198
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=92.42 E-value=1.9 Score=43.07 Aligned_cols=68 Identities=29% Similarity=0.434 Sum_probs=41.5
Q ss_pred ChhhHHHHHHcCCcEEEEcccccccccc----c--cccccccccccccccccccccC--c-eeeccccCchhHHHHHHcC
Q psy3862 391 SPGDVAKAMGAGADFVMLGGMFAGHDQS----G--GELTNIEYMFFPLVGDMNSYLG--G-VVDGGCTSPGDVAKAMGAG 461 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~----~--~~~~~~~~~~~~~~~~~~~~~~--~-~i~gG~v~t~~~a~~l~aG 461 (671)
++++..+..+.|+|++++.....+-++. . ++.++ .+++.++ . ++.|| +...++.+++.+|
T Consensus 113 t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~v~a~GG-I~~~~i~~~~~~G 181 (212)
T PRK00043 113 TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLR----------EIRAAVGDIPIVAIGG-ITPENAPEVLEAG 181 (212)
T ss_pred CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHH----------HHHHhcCCCCEEEECC-cCHHHHHHHHHcC
Confidence 4567777778999999986333222111 1 22222 2233332 1 45666 4677777789999
Q ss_pred CcEEEECc
Q psy3862 462 ADFVMLGG 469 (671)
Q Consensus 462 Ad~V~vG~ 469 (671)
||+|-+|.
T Consensus 182 a~gv~~gs 189 (212)
T PRK00043 182 ADGVAVVS 189 (212)
T ss_pred CCEEEEeH
Confidence 99998874
No 199
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.41 E-value=3.1 Score=43.27 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred cCceEEe----cCCCccccHHHHHHHHHcCCeEE-eecC--CCHHHHHHhhhcCcc-cccc-eEEecCCChhhHHHHHHH
Q psy3862 55 QGVPIIA----ANMDTVGTFEMAKHLAKHGLFTT-IHKY--YTLEEWKAFAVQNPD-VIKH-VAVSSGISAKDLAGLKEI 125 (671)
Q Consensus 55 l~~Piv~----a~M~~vt~~~lA~Ala~~gglgv-Ih~n--~~~Eeq~~~i~~~p~-~~~~-~~v~~G~~~~d~~rl~~l 125 (671)
.++|++- ++| .....++...+...|.-++ +|-- -+.|+..++...... -.+. +.+++..+ .+++..+
T Consensus 73 ~~~Pl~lM~y~n~~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~---~e~l~~~ 148 (244)
T PRK13125 73 VSVPIILMTYLEDY-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP---DLLIHRL 148 (244)
T ss_pred CCCCEEEEEecchh-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHH
Confidence 4668642 333 1234667777888887787 5621 112333333221111 1111 12333333 4566666
Q ss_pred HHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 126 LAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 126 ~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+...++..++.++..+|. .....+.++++|+..+...++++ .+.+.+.++.+.++|||.+++++
T Consensus 149 ~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 149 SKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 665444333344433332 34556677777765554345544 56699999999999999999853
No 200
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.27 E-value=1 Score=47.04 Aligned_cols=68 Identities=29% Similarity=0.269 Sum_probs=38.9
Q ss_pred hhhHHHHHHcCCcEEEEcccccc--ccccccccccccccccccccccccccC-c-eeeccccCchhHHHHHHcCCcEEEE
Q psy3862 392 PGDVAKAMGAGADFVMLGGMFAG--HDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 392 ~~~~~~l~~aG~d~i~id~~a~g--h~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
+....++.++|+|++.--|.--| +....-+. ++.+++..+ . ++.||+-.+.+++++|+.|||+|.|
T Consensus 134 ~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~----------i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYN----------LRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHH----------HHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 35556677889999976333323 22111122 222233221 1 4566655555556689999999999
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 204 ~S 205 (250)
T PRK00208 204 NT 205 (250)
T ss_pred Ch
Confidence 85
No 201
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.17 E-value=4.9 Score=42.16 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCcEEE-ECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVIK-VGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~Iv-Vdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++.+.+.|+|-|. +|...- -..+-+++.++.-+. .+| +.||+-+.+.++.++.+|++++-+|
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~------~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS------KRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC------cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 4778899999987663 333110 001123444443332 246 7999999999999999999999887
No 202
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.16 E-value=0.84 Score=48.02 Aligned_cols=152 Identities=22% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCeEE-ee-----cCCCHHHHHHhhh---cCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862 70 FEMAKHLAKHGLFTT-IH-----KYYTLEEWKAFAV---QNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA 140 (671)
Q Consensus 70 ~~lA~Ala~~gglgv-Ih-----~n~~~Eeq~~~i~---~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a 140 (671)
.++|.++...|--++ +. -+.+++... .++ .-|...+.|. . +...+.+...+ ++|++.+...
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~-~v~~~v~iPvl~kdfi------~-~~~qi~~a~~~--GAD~VlLi~~ 142 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLR-AARAAVSLPVLRKDFI------I-DPYQIYEARAA--GADAILLIVA 142 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHH-HHHHhcCCCEEeeeec------C-CHHHHHHHHHc--CCCEEEEEec
Confidence 679998888776554 31 123344322 222 1233222221 1 12256666666 8899888755
Q ss_pred CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc----hhhhhcc-cc
Q psy3862 141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF----FLIQFYS-CI 215 (671)
Q Consensus 141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~----~~i~~i~-~~ 215 (671)
.-....+.++++..++ + +..+..-+.+.+.++++.++|+|+|-+. +....+. .+++ .+++.+. ..
T Consensus 143 ~l~~~~l~~li~~a~~-l--Gl~~lvevh~~~E~~~A~~~gadiIgin---~rdl~~~----~~d~~~~~~l~~~~p~~~ 212 (260)
T PRK00278 143 ALDDEQLKELLDYAHS-L--GLDVLVEVHDEEELERALKLGAPLIGIN---NRNLKTF----EVDLETTERLAPLIPSDR 212 (260)
T ss_pred cCCHHHHHHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHcCCCEEEEC---CCCcccc----cCCHHHHHHHHHhCCCCC
Confidence 3112334444444433 2 2222234677888888999999999652 2111010 0111 1122221 12
Q ss_pred C--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 216 P--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 216 p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
| +-||+-|.+.++.++++|||+|-||
T Consensus 213 ~vIaegGI~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 3 5799999999999999999999998
No 203
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.10 E-value=0.12 Score=51.10 Aligned_cols=88 Identities=27% Similarity=0.319 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~ 222 (671)
.+.+.++.+++.+|...++.--+.+.+.++.++++|+|.|.+|...-.. +...++...+++ .+-++|||
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v-------~ie~SGGI- 136 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRV-------KIEASGGI- 136 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTS-------EEEEESSS-
T ss_pred CHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcE-------EEEEECCC-
Confidence 3667778888878776655556788999999999999999887632110 000011111110 01168988
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.++.+.|+|.+=+|
T Consensus 137 ~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp STTTHHHHHHTT-SEEEEC
T ss_pred CHHHHHHHHhcCCCEEEcC
Confidence 7788888899999999777
No 204
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=92.01 E-value=0.4 Score=45.37 Aligned_cols=92 Identities=20% Similarity=0.055 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccc
Q psy3862 347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN 424 (671)
Q Consensus 347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~ 424 (671)
.++..+-+.+||-|++ .+.|+|+.++.+ .+.++|+++|-+....|.+..-.+++
T Consensus 20 ~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa------------------------~e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGPLFQTPEEIARQA------------------------VEADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHH------------------------HHcCCCEEEEcCchhhhHHHHHHHHH
Confidence 3556677788888888 566777766655 34567777775333455544444433
Q ss_pred ccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 425 IEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
.++...+. --.++.||+..+.+..++.++|.|.+ ++||
T Consensus 76 ~L~~~g~~-------~i~vivGG~~~~~~~~~l~~~Gvd~~----~~~g 113 (132)
T TIGR00640 76 ELDKLGRP-------DILVVVGGVIPPQDFDELKEMGVAEI----FGPG 113 (132)
T ss_pred HHHhcCCC-------CCEEEEeCCCChHhHHHHHHCCCCEE----ECCC
Confidence 33332110 01156899887777788889999988 6788
No 205
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=91.94 E-value=2.6 Score=44.33 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=39.0
Q ss_pred HcCCcEEEEccccccccccccccccccccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
..++|.||+-|...|+..+.-++ +.. |+..+ .+++|+=+...++.++|+. ||+++||.
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l-~~v----------r~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS 228 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKL-KRV----------REAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGS 228 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHH-HHH----------HhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEee
Confidence 45899999998888886544332 222 22222 2556666777777888865 89999995
No 206
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.88 E-value=3.2 Score=47.23 Aligned_cols=158 Identities=19% Similarity=0.107 Sum_probs=93.8
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-cc--CCccccccHHHHHHHHHcCCCEEEEccc
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CI--PQAGNVVTGEMVEELILSGADVIKVGIG 243 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~--p~aGnV~t~~~a~~li~aGAdgvkVG~~ 243 (671)
-+.+.+.++..+++|+++|=|..-.= .|.-.+...+..+.+++. .+ ..-+||-|.+.++.+.. ||||+.||
T Consensus 165 Evh~~~El~~al~~~a~iiGiNnRdL---~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG-- 238 (454)
T PRK09427 165 EVSNEEELERAIALGAKVIGINNRNL---RDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIG-- 238 (454)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCCC---ccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEEC--
Confidence 46789999999999999994422111 010000001122233331 11 15799999999999865 79999999
Q ss_pred CCCccccceecccCcchhhhHHHHHHHhhhc---CCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862 244 PGSVCTTRLKTGVGYPQFSAVLECADAAHGL---GGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 244 ~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~ 320 (671)
|..+..- .|. +..+++ .++|.
T Consensus 239 ------~~lm~~~-d~~--------~~~~~L~~~~vKIC----------------------------------------- 262 (454)
T PRK09427 239 ------SSLMAED-DLE--------LAVRKLILGENKVC----------------------------------------- 262 (454)
T ss_pred ------HHHcCCC-CHH--------HHHHHHhccccccC-----------------------------------------
Confidence 4444321 111 111111 11111
Q ss_pred eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcC--CeEEEc-----cCCCHHHHHHHHhcCcccccceeeecccChh
Q psy3862 321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVADGGCTSPG 393 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~G--glgvih-----r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~ 393 (671)
.+++.+-|...+++| .+|+|+ ||.|+++..+....+| ++.|+..-..+++
T Consensus 263 ---------------------Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~--v~~VgVfv~~~~~ 319 (454)
T PRK09427 263 ---------------------GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP--LRYVGVFRNADIE 319 (454)
T ss_pred ---------------------CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC--CCEEEEEeCCCHH
Confidence 256777777777776 578875 7888888777777666 3334433334557
Q ss_pred hHHHHH-HcCCcEEEEc
Q psy3862 394 DVAKAM-GAGADFVMLG 409 (671)
Q Consensus 394 ~~~~l~-~aG~d~i~id 409 (671)
++.+++ +.+.|++-+.
T Consensus 320 ~i~~i~~~~~lD~vQLH 336 (454)
T PRK09427 320 DIVDIAKQLSLAAVQLH 336 (454)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 777764 6789988764
No 207
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=91.82 E-value=1.2 Score=47.21 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCcEEEECcCCCceE-EEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVC-TTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV 247 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~-~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~ 247 (671)
+-++.|.++|+|.|-+.+. .+.- .....+. -.++..+...+ ..+=+...++++.++++|+|.+.+.+...-.
T Consensus 24 ~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~---~~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g~~~i~i~~~~Sd~ 99 (274)
T cd07938 24 ELIDALSAAGLRRIEVTSF-VSPKWVPQMADA---EEVLAGLPRRPGVRYSALVPNLRGAERALAAGVDEVAVFVSASET 99 (274)
T ss_pred HHHHHHHHcCCCEEEeCCC-CCcccccccCCH---HHHHhhcccCCCCEEEEECCCHHHHHHHHHcCcCEEEEEEecCHH
Confidence 5678899999999988631 1110 0000000 00010010000 1111357889999999999999888655443
Q ss_pred cccceecccCcc-hhhhHHHHHHHhhhcCCcc
Q psy3862 248 CTTRLKTGVGYP-QFSAVLECADAAHGLGGHI 278 (671)
Q Consensus 248 ~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~~ 278 (671)
...+ ..+..+. .+..+.++.+.+++.|.++
T Consensus 100 ~~~~-~~~~s~~~~~~~~~~~v~~ak~~G~~v 130 (274)
T cd07938 100 FSQK-NINCSIAESLERFEPVAELAKAAGLRV 130 (274)
T ss_pred HHHH-HcCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3322 3333333 3455677788888776543
No 208
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=91.79 E-value=2.9 Score=44.71 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=46.2
Q ss_pred eccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEcccC
Q psy3862 168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVGIGP 244 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~ 244 (671)
+.....++.|.++|||+| | . +.++. |.-.++..++ ..|..-++.|-+-++..+++|||-|+
T Consensus 83 igh~~Ea~~L~~~GvDiI--D---~---Te~lr---pad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~----- 146 (293)
T PRK04180 83 IGHFVEAQILEALGVDYI--D---E---SEVLT---PADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIR----- 146 (293)
T ss_pred hhHHHHHHHHHHcCCCEE--e---c---cCCCC---chHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeee-----
Confidence 344688999999999999 3 1 11111 1111222222 35777889999999999999999874
Q ss_pred CCccccceecccCc
Q psy3862 245 GSVCTTRLKTGVGY 258 (671)
Q Consensus 245 ~~~~~Tr~V~gv~~ 258 (671)
||-+ +|-|.
T Consensus 147 ----Ttge-~gtg~ 155 (293)
T PRK04180 147 ----TKGE-AGTGN 155 (293)
T ss_pred ----ccCC-CCCcc
Confidence 5555 66664
No 209
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.76 E-value=0.32 Score=51.52 Aligned_cols=82 Identities=29% Similarity=0.355 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--Ccccccc
Q psy3862 149 DFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVT 223 (671)
Q Consensus 149 ~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t 223 (671)
..++++|+..|...++.-.+.|.+++..++++|+|+|-+|--.-. .+++ .++.+. .+| +.||| |
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e----~l~~------~v~~i~~~~~i~i~asGGI-t 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPE----ELKE------AVKLLKGLPRVLLEASGGI-T 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhccCCCeEEEEECCC-C
Confidence 456667777775556777888999999999999999988652111 1110 011111 234 67777 7
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.++.++|||++=+|
T Consensus 238 ~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 238 LENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999999654
No 210
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=91.76 E-value=9.9 Score=36.92 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CC-ceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PK-HVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t 197 (671)
+.+..+.+. +++.+.++..........+.++++++.. +. ..++. .+..+.+.++|+|.+-.....- ...
T Consensus 16 ~~l~~l~~~--g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-----~~~~~~a~~~g~~~vh~~~~~~--~~~ 86 (196)
T cd00564 16 EVVEAALKG--GVTLVQLREKDLSARELLELARALRELCRKYGVPLII-----NDRVDLALAVGADGVHLGQDDL--PVA 86 (196)
T ss_pred HHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEE-----eChHHHHHHcCCCEEecCcccC--CHH
Confidence 456667676 7788888876655555556666665432 11 12222 2356677899999884321110 000
Q ss_pred EecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+++..+. ...+...+.|.+.++.+...|+|.+-++
T Consensus 87 ~~~~~~~~--------~~~~g~~~~t~~~~~~~~~~g~d~i~~~ 122 (196)
T cd00564 87 EARALLGP--------DLIIGVSTHSLEEALRAEELGADYVGFG 122 (196)
T ss_pred HHHHHcCC--------CCEEEeeCCCHHHHHHHhhcCCCEEEEC
Confidence 00000000 0112333456777888888888888765
No 211
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=91.67 E-value=2.5 Score=44.14 Aligned_cols=121 Identities=20% Similarity=0.270 Sum_probs=71.3
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E------------------
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N------------------ 167 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~------------------ 167 (671)
|+.++-|+. ..+.+.+++.. +++.+++..+.- .-.+.++++.+.||.-.++.+ .
T Consensus 76 pv~~~GGi~--s~~d~~~~~~~--Ga~~vivgt~~~---~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 76 PLTVGGGIK--SIEDVDKLLRA--GADKVSINTAAV---KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CEEEECCCC--CHHHHHHHHHc--CCCEEEEChhHh---hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 455544553 34556666665 677777754421 113455555555652111111 0
Q ss_pred ------eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862 168 ------VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 168 ------v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG 234 (671)
....+.++.|.++|+|.|.+.+ ..|+. ..+++.++.-+. .+| ++|||.+.+.+..++..|
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~-------~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g 221 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTK-------SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG 221 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCC-------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 1124667899999999988743 22221 112333333332 356 799999999999999988
Q ss_pred -CCEEEEc
Q psy3862 235 -ADVIKVG 241 (671)
Q Consensus 235 -AdgvkVG 241 (671)
|||+-+|
T Consensus 222 ~~dgv~~g 229 (254)
T TIGR00735 222 KADAALAA 229 (254)
T ss_pred CcceeeEh
Confidence 9999888
No 212
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.48 E-value=0.4 Score=51.05 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT 223 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t 223 (671)
+.+.+++.|+..|...++.-.+.+.++++.+.++|+|+|-+|- -|- ..+++ .++.+. .+| +.||| |
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-~~~---e~l~~------~~~~~~~~i~i~AiGGI-t 242 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-RTP---DEIRE------FVKLVPSAIVTEASGGI-T 242 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-CCH---HHHHH------HHHhcCCCceEEEECCC-C
Confidence 5566777777776556677788899999999999999998863 110 00110 001111 134 78999 9
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.++.++|||+|=||
T Consensus 243 ~~ni~~~a~~Gvd~IAvg 260 (277)
T PRK08072 243 LENLPAYGGTGVDYISLG 260 (277)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999999777
No 213
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.27 E-value=8.6 Score=36.81 Aligned_cols=65 Identities=29% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHcCCcEEEEccccccccccccccccccccccccccccccccC-c-eeeccccCc-hhHHHHHHcCCcEEEEC
Q psy3862 398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSP-GDVAKAMGAGADFVMLG 468 (671)
Q Consensus 398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t-~~~a~~l~aGAd~V~vG 468 (671)
+.+.|+|+|.+++...+-........ ..+.+..+++..+ . +..|| +.+ .++.+++.+|||+|.+|
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~pi~~~GG-i~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPI-----ADLLLILAKRGSKVPVIAGGG-INDPEDAAEALALGADGVIVG 199 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchh-----HHHHHHHHHhcCCCCEEEECC-CCCHHHHHHHHHhCCCEEEec
Confidence 57789999999854332211111000 0000111111111 1 44565 566 66677888899999998
No 214
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=91.25 E-value=2.4 Score=42.31 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCeEE-EccCCCHHHHHHHHhcCcccccceee-ecccChhhHHHHHHcCCcEEEEcccccccccccc--c
Q psy3862 346 FEMAKHLAKHGLFTT-IHKYYTLEEWKAFAVQNPDVIKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG--E 421 (671)
Q Consensus 346 ~~mA~~la~~Gglgv-ihr~~~~e~~~~~v~~~~~~~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~--~ 421 (671)
.+.+..+.+.|.-++ +|-..+ ++...+++..+..-..+.. ....++.+..+.+..++|++.++....|.+.... .
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 466777778887663 454332 3333333221111001111 1111233333334567999888743334432211 1
Q ss_pred cccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 422 LTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.++ .++.++++.+ . .++|| +...++.+++.+|||++.||.
T Consensus 148 ~~~-------~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~iivgs 194 (210)
T TIGR01163 148 TLE-------KIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADILVAGS 194 (210)
T ss_pred HHH-------HHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEEEECh
Confidence 111 1112222211 1 34566 466666778899999999985
No 215
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.18 E-value=1.9 Score=45.15 Aligned_cols=121 Identities=23% Similarity=0.309 Sum_probs=71.7
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--------------------
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-------------------- 166 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-------------------- 166 (671)
|+.++-|+ +..+.+.+++.. +++.++++.+- ..-.+.++++.+.|+...++.+
T Consensus 76 pv~~gGGi--~s~~d~~~l~~~--G~~~vvigs~~---~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 76 PLCYGGGI--KTLEQAKKIFSL--GVEKVSINTAA---LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred CEEECCCC--CCHHHHHHHHHC--CCCEEEEChHH---hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 45444444 345666666665 67777776531 1113445555444542111110
Q ss_pred --EeccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-HcCCC
Q psy3862 167 --NVVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGAD 236 (671)
Q Consensus 167 --~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAd 236 (671)
.....+.++.+.+.|++.+.+-. ..|+. .-+++.++..+. .+| ++|||.+.+.++.++ ..|+|
T Consensus 149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~-------~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gvd 221 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTM-------KGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGAD 221 (258)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc-------CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCC
Confidence 11124778889999999887632 22211 113444444443 356 799999999999999 79999
Q ss_pred EEEEc
Q psy3862 237 VIKVG 241 (671)
Q Consensus 237 gvkVG 241 (671)
|+-+|
T Consensus 222 gVivg 226 (258)
T PRK01033 222 AAAAG 226 (258)
T ss_pred EEEEc
Confidence 99888
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.12 E-value=1 Score=47.96 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~ 222 (671)
.+.+.++++|+..|...+|.--+.+.++++.++++|+|+|-+|--.-. .+++ .++++. .+-++|||
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~s~e----~l~~------av~~~~~~~~leaSGgI- 246 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNFSLD----DLRE------GVELVDGRAIVEASGNV- 246 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCCCHH----HHHH------HHHHhCCCeEEEEECCC-
Confidence 467788888877775556666778999999999999999988742210 0110 001111 11278998
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.+....|+|.+-+|
T Consensus 247 ~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 247 NLNTVGAIASTGVDVISVG 265 (281)
T ss_pred CHHHHHHHHhcCCCEEEeC
Confidence 8889999999999999777
No 217
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.12 E-value=3.3 Score=43.67 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHcC-CcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 399 MGAG-ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 399 ~~aG-~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+..| +|.+++-|..+|+..+.-.+. ..+...+.+ .++.||-+...++.++++. ||++.||.
T Consensus 167 ~~~~~aDavivtG~~TG~~~d~~~l~-~vr~~~~~~--------PvllggGvt~eNv~e~l~~-adGviVgS 228 (257)
T TIGR00259 167 VERGLADAVILSGKTTGTEVDLELLK-LAKETVKDT--------PVLAGSGVNLENVEELLSI-ADGVIVAT 228 (257)
T ss_pred HHhcCCCEEEECcCCCCCCCCHHHHH-HHHhccCCC--------eEEEECCCCHHHHHHHHhh-CCEEEECC
Confidence 4444 999999999999764433221 111101100 1445666789999998876 99999985
No 218
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.09 E-value=3.8 Score=45.73 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhCCCceEEEEE-e-cc----HHHHHHHHHCCCcEEEECcCCCceE--EE---EecccCCc-c-hhhhh
Q psy3862 145 QTFVDFVRRIREMYPKHVIIAGN-V-VT----GEMVEELILSGADVIKVGIGPGSVC--TT---RLKNKTSD-F-FLIQF 211 (671)
Q Consensus 145 ~~~~~~ik~lr~~~P~~~li~g~-v-~t----~e~a~~Li~AGaD~IvVdga~G~~~--~t---~v~~~~~~-~-~~i~~ 211 (671)
+.+++.++++++.+|...+|+.- . .+ .+-++.+.++|||+|.+..+.=|.. .. .+.+ .|+ + .++..
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq-~~e~~~~i~~~ 176 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQ-DCDLLEEVCGW 176 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhcc-CHHHHHHHHHH
Confidence 45666677777777765555532 1 23 3677788899999999877532210 00 0000 010 0 01111
Q ss_pred cc---ccC----CccccccH-HHHHHHHHcCCCEEEE
Q psy3862 212 YS---CIP----QAGNVVTG-EMVEELILSGADVIKV 240 (671)
Q Consensus 212 i~---~~p----~aGnV~t~-~~a~~li~aGAdgvkV 240 (671)
++ .+| ..-|+.+- +-++++.++|||||-.
T Consensus 177 Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 177 INAKATVPVWAKMTPNITDITQPARVALKSGCEGVAA 213 (385)
T ss_pred HHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEE
Confidence 11 244 45566544 4566688999999944
No 219
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.04 E-value=2.7 Score=43.12 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=40.0
Q ss_pred hhHHHHHHcC-CcEEEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 393 GDVAKAMGAG-ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 393 ~~~~~l~~aG-~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
+.+.++.+.| +|++.+-.+-.|.+..... ..-+..+..++++..+ .++||+ ...++.+++.+|||++.||
T Consensus 129 ~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~-----~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 129 EAVEPVVEKGLVDMVLVMSVEPGFGGQSFI-----PSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred HHHHHHHhccCCCEEEEEEEecCCCccccC-----HHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEC
Confidence 4455555554 9999876444455432110 0000112223333222 467884 6666677889999999998
Q ss_pred c
Q psy3862 469 G 469 (671)
Q Consensus 469 ~ 469 (671)
.
T Consensus 203 s 203 (229)
T PLN02334 203 S 203 (229)
T ss_pred h
Confidence 5
No 220
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.01 E-value=4.3 Score=42.97 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc-cccceeeecc-cChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVADGGC-TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~-~~~~v~~~~~-~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~ 421 (671)
+-.++...+++.|-=|+|=--+++||..++....++ -+..+.-..- ++++++.++.+..-.||.+- +..|-.-...+
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v-S~~GvTG~~~~ 185 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV-STTGVTGLKTE 185 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE-cCCCCCCCCcc
Confidence 456788999999999999999999987776654332 1333333333 34577777766655577765 33333211111
Q ss_pred cccccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 422 LTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
+. ...-..+..+|++... +.+|+-+.+.+.++ ....|||+|.||.
T Consensus 186 ~~---~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 186 LD---KKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cc---HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 11 1111234455555433 44555577777766 5689999999995
No 221
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.88 E-value=0.43 Score=46.57 Aligned_cols=78 Identities=26% Similarity=0.245 Sum_probs=49.9
Q ss_pred CCCceEEEEEeccHHHHHHHHHCCCcEEEECcC-CCceEEEEecccC---Ccchhhhhcc---ccC--CccccccHHHHH
Q psy3862 158 YPKHVIIAGNVVTGEMVEELILSGADVIKVGIG-PGSVCTTRLKNKT---SDFFLIQFYS---CIP--QAGNVVTGEMVE 228 (671)
Q Consensus 158 ~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga-~G~~~~t~v~~~~---~~~~~i~~i~---~~p--~aGnV~t~~~a~ 228 (671)
.+...+++..+.+.+.++.+.+.|+|+|.+..- ++.. ++.. ..+..+..+. .+| +.||| +.+.+.
T Consensus 92 ~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~ 165 (196)
T cd00564 92 LGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPT-----KPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAA 165 (196)
T ss_pred cCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCC-----CCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHH
Confidence 343445666667888899999999999988531 1100 0000 0111222221 245 68999 579999
Q ss_pred HHHHcCCCEEEEc
Q psy3862 229 ELILSGADVIKVG 241 (671)
Q Consensus 229 ~li~aGAdgvkVG 241 (671)
.++++|||++-+|
T Consensus 166 ~~~~~Ga~~i~~g 178 (196)
T cd00564 166 EVLAAGADGVAVI 178 (196)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999887
No 222
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.78 E-value=2.6 Score=41.87 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCeEE-EccCCC--HHHHHHHHhcCcccccceeeecc-cCh-hhHHHHHHcCCcEEEEcccccccccccc
Q psy3862 346 FEMAKHLAKHGLFTT-IHKYYT--LEEWKAFAVQNPDVIKHVADGGC-TSP-GDVAKAMGAGADFVMLGGMFAGHDQSGG 420 (671)
Q Consensus 346 ~~mA~~la~~Gglgv-ihr~~~--~e~~~~~v~~~~~~~~~v~~~~~-~~~-~~~~~l~~aG~d~i~id~~a~gh~~~~~ 420 (671)
.+.+..+.+.|.=++ +|--.+ ..+..+.+++.. + .+..+.. .++ +++.+. ..++|++.+++...|.+....
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELG--M-KAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCC--C-eEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCCCCCccc
Confidence 445666667776666 775433 333333333221 1 1111111 122 334443 344999998844334433221
Q ss_pred ccccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 421 ELTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
... ....+..+++..+ . .++|| +...++.+++.+|||+|.||.
T Consensus 146 ~~~-----~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivgs 195 (211)
T cd00429 146 IPE-----VLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAGS 195 (211)
T ss_pred CHH-----HHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEECH
Confidence 110 0001112222221 2 35677 466666678899999999985
No 223
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.54 E-value=1.2 Score=48.50 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=20.7
Q ss_pred eeccccCchhHHHHHHcCCcEEEECc
Q psy3862 444 VDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 444 i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
-.||+....++.+.|.+|||.|+||.
T Consensus 244 g~GGI~s~~Da~e~l~aGA~~V~v~t 269 (334)
T PRK07565 244 ATTGVHDAEDVIKMLLAGADVVMIAS 269 (334)
T ss_pred EECCCCCHHHHHHHHHcCCCceeeeh
Confidence 36887666677778899999999984
No 224
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=90.52 E-value=0.57 Score=49.56 Aligned_cols=84 Identities=29% Similarity=0.335 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT 223 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t 223 (671)
....+++.|+..|...++.-.+.|.++++.+.++|+|+|-+|--.- ..+++ .++.+. .+| +.||| |
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~----e~lk~------~v~~~~~~ipi~AsGGI-~ 232 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP----EEIKE------AVQLLKGRVLLEASGGI-T 232 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH----HHHHH------HHHHhcCCCcEEEECCC-C
Confidence 3445666677676556677788899999999999999998764110 01110 011111 245 79999 8
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.++.++|||++=||
T Consensus 233 ~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 233 LDNLEEYAETGVDVISSG 250 (265)
T ss_pred HHHHHHHHHcCCCEEEeC
Confidence 999999999999999775
No 225
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=90.32 E-value=1.2 Score=45.93 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHh-CCCceEE---EEEecc---HHHHHHHHHCCCcEEEECcC
Q psy3862 121 GLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREM-YPKHVII---AGNVVT---GEMVEELILSGADVIKVGIG 190 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~-~P~~~li---~g~v~t---~e~a~~Li~AGaD~IvVdga 190 (671)
.+++.+....++--+++|... |+...+.+.++.+++. .|...++ .+-... ....+.++++|+|+|+.-++
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 444555542222224454332 2335555556666554 3443444 333222 24456688899999987653
Q ss_pred CCceEEEEecccCCcchhhhhc-c----ccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862 191 PGSVCTTRLKNKTSDFFLIQFY-S----CIP--QAGNVVTGEMVEELILSGADVIKVGI 242 (671)
Q Consensus 191 ~G~~~~t~v~~~~~~~~~i~~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~ 242 (671)
-+.. ..++..+..+ . .++ ++|||-|.+++.+++++||+ |+|.
T Consensus 159 ~~~~--------gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~--riGt 207 (221)
T PRK00507 159 FSTG--------GATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGAT--RLGT 207 (221)
T ss_pred CCCC--------CCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcc--eEcc
Confidence 2110 0011111111 1 123 79999999999999999999 4564
No 226
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=90.20 E-value=1.2 Score=48.15 Aligned_cols=172 Identities=23% Similarity=0.248 Sum_probs=83.8
Q ss_pred ecCCCccccHHHHHHHHHcCCeEE-eecCCCHHHH-------HHhhhcCcccccceEEec-CCChhhHHHHHHHHHhCCC
Q psy3862 61 AANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLEEW-------KAFAVQNPDVIKHVAVSS-GISAKDLAGLKEILAALPE 131 (671)
Q Consensus 61 ~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~Eeq-------~~~i~~~p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~ 131 (671)
-+||.++|+..+.....+.|+..+ .=...+.+.. ..++...|. ..|+.+.. |..++++.++.+++.. -+
T Consensus 2 LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~-~~ 79 (309)
T PF01207_consen 2 LAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPN-ERPLIVQLFGNDPEDLAEAAEIVAE-LG 79 (309)
T ss_dssp E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC--T-TEEEEEE-S-HHHHHHHHHHHCC-TT
T ss_pred ccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeeccccccc-ccceeEEEeeccHHHHHHHHHhhhc-cC
Confidence 479999999888886666665522 1112222221 111111221 13444432 4555555555555443 24
Q ss_pred ceEEEeecc--------C--C-----CChHHHHHHHHHHHhC--CCceEEEEEec-----cHHHHHHHHHCCCcEEEECc
Q psy3862 132 IEYICLDVA--------N--G-----YTQTFVDFVRRIREMY--PKHVIIAGNVV-----TGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 132 ~d~Ivld~a--------~--G-----~~~~~~~~ik~lr~~~--P~~~li~g~v~-----t~e~a~~Li~AGaD~IvVdg 189 (671)
.+.|-+|.. . | ++..+.+.++.+++.. |...++=-... +.+.++.|.++|+|.|.|-+
T Consensus 80 ~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 80 FDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp -SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred CcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 555555421 0 1 1345566677776654 44334322221 46889999999999998843
Q ss_pred CCCceEEEEecccC---Ccchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862 190 GPGSVCTTRLKNKT---SDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG 241 (671)
Q Consensus 190 a~G~~~~t~v~~~~---~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG 241 (671)
.. -++.+ .+...+..+. .+| .-|+|-|.+.+...++- |+|||.+|
T Consensus 160 ---Rt----~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 160 ---RT----RKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---S-----TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ---Cc----hhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 10 00111 2222222221 245 68999999999999976 99999999
No 227
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.17 E-value=4.1 Score=40.45 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCeEEE-ccCCC---HHHHHHHHhcCcccccceee-ecccChhhHHHHHHcCCcEEEEcccccccc---cc
Q psy3862 347 EMAKHLAKHGLFTTI-HKYYT---LEEWKAFAVQNPDVIKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHD---QS 418 (671)
Q Consensus 347 ~mA~~la~~Gglgvi-hr~~~---~e~~~~~v~~~~~~~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~---~~ 418 (671)
.++..+.+.|.=.++ |-.-+ ++++.+.+++.. ++...+ .+..++++..++.+.|+|++.+.-..++.. ..
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCC
Confidence 466778888875555 54333 345555555421 122221 344456666667788999999841111111 11
Q ss_pred ccccccccccccccccccccc--cCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 419 GGELTNIEYMFFPLVGDMNSY--LGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
..+.++ .+++. ++=.++||+ ...++.+++++|||++-+|.
T Consensus 146 ~~~~i~----------~~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 146 PEDDLK----------KVKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred CHHHHH----------HHHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEee
Confidence 112211 12211 111456774 56666678899999998885
No 228
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.13 E-value=1.4 Score=46.68 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccH
Q psy3862 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTG 224 (671)
Q Consensus 148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~ 224 (671)
...+++.|+..|...++.-.+.+.++++.++++|+|+|-+|--. ...+++ .++.+. .+| +.||| |.
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~----~e~l~~------~~~~~~~~ipi~AiGGI-~~ 237 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS----PEELRE------AVALLKGRVLLEASGGI-TL 237 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC----HHHHHH------HHHHcCCCCcEEEECCC-CH
Confidence 44566677777755677778889999999999999999886321 011110 011111 245 79999 89
Q ss_pred HHHHHHHHcCCCEEEEc
Q psy3862 225 EMVEELILSGADVIKVG 241 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG 241 (671)
+.+..+.++|+|++=||
T Consensus 238 ~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 238 ENIRAYAETGVDYISVG 254 (268)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 99999999999999777
No 229
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.12 E-value=5.3 Score=42.16 Aligned_cols=124 Identities=20% Similarity=0.112 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-cccee-eecccChhhHHHHHHcCCcEEEEccccccccccc
Q psy3862 342 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG 419 (671)
Q Consensus 342 tV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~ 419 (671)
.-+..++...+++.|--|+|=--.++||..+++...++. +..+. .+-.++++++..+.+..-+||.+- +..|.+-..
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v-s~~GvTG~~ 181 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV-SRAGVTGAR 181 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE-eCCCCCCcc
Confidence 346667899999999999999888898877777554331 33333 333445678888878778888764 223332111
Q ss_pred cccccccccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 420 GELTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
... .......+..+|++... ++.|+-+.+.+.++.+..+||+|.||.
T Consensus 182 ~~~---~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS 229 (258)
T PRK13111 182 SAD---AADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS 229 (258)
T ss_pred cCC---CccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence 111 01111234455665433 555666777777665444699999985
No 230
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.12 E-value=2.7 Score=40.94 Aligned_cols=162 Identities=18% Similarity=0.130 Sum_probs=83.4
Q ss_pred ccccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEee
Q psy3862 66 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLD 138 (671)
Q Consensus 66 ~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld 138 (671)
.-...++++.+.+.|--|+.=.+ +..+.+.+ .+...-++.+.++. +.+..+.++...+. +++.+.+.
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~--Gad~i~v~ 85 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL--GADEIDVV 85 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc--CCCEEEEe
Confidence 33446777877776644652212 22222221 11101133333332 22234556666666 77877664
Q ss_pred ccCCC-----ChHHHHHHHHHHHhC-CCceEEEEEec----cHHH----HHHHHHCCCcEEEECcCCC----ce-EEEEe
Q psy3862 139 VANGY-----TQTFVDFVRRIREMY-PKHVIIAGNVV----TGEM----VEELILSGADVIKVGIGPG----SV-CTTRL 199 (671)
Q Consensus 139 ~a~G~-----~~~~~~~ik~lr~~~-P~~~li~g~v~----t~e~----a~~Li~AGaD~IvVdga~G----~~-~~t~v 199 (671)
....+ .+...+.++++.+.. +...++.-+.. +.+. ++.+.+.|+|.|+...+.. .. ....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i 165 (201)
T cd00945 86 INIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLM 165 (201)
T ss_pred ccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHH
Confidence 33221 244556666665542 23455555542 3333 3345679999998765311 10 01111
Q ss_pred cccCCcchhhhhccccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 200 KNKTSDFFLIQFYSCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 200 ~~~~~~~~~i~~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++..++ .+| +.||+-+.+.+..++.+||+|+-+|
T Consensus 166 ~~~~~~--------~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 166 KEAVGG--------RVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHhccc--------CCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 111110 123 6888989999999999999998554
No 231
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=90.06 E-value=3 Score=42.98 Aligned_cols=65 Identities=29% Similarity=0.265 Sum_probs=45.6
Q ss_pred cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862 170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG 241 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG 241 (671)
+.+.++.|.++|+|.|.+-+ ..|+ ....++.++..+. .+| +.|||.+.+.+.++++. |||++-||
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~-------~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGT-------KKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCC-------CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 34777889999999888733 2221 1112333333332 356 79999999999999997 99999998
No 232
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.97 E-value=1.4 Score=47.09 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~ 222 (671)
.+.+.+++.|+..|...+|.--+.+.|+++.++++|||+|-.|--.=. .+++ .++++. . +-++|||
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnmspe----~l~~------av~~~~~~~~leaSGGI- 250 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMSLE----QIEQ------AITLIAGRSRIECSGNI- 250 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhcCceEEEEECCC-
Confidence 456677777777775556666778999999999999999988741100 0110 011111 1 1278888
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.+....|+|.|-+|
T Consensus 251 ~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 251 DMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred CHHHHHHHHhcCCCEEEeC
Confidence 8899999999999999777
No 233
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.90 E-value=3.1 Score=41.87 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=20.3
Q ss_pred eeccccCchhHHHHHHcCCcEEEECc
Q psy3862 444 VDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 444 i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
++|| +.+.++.+++++|||+|.||.
T Consensus 175 v~GG-I~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 175 VDGG-INADNIKECAEAGADVFVAGS 199 (220)
T ss_pred EECC-CCHHHHHHHHHcCCCEEEECh
Confidence 5677 567777778889999999985
No 234
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.84 E-value=2 Score=44.67 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
+.++|+|.|.||..-.|+..-.++.++.++..++. + .+|.=|-|.+.+-++ .+.+|||+||||.
T Consensus 157 l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~-------i-pIIgNGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFND-------K-IIIGNNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred HHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCC-------C-cEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 36789999999732222210123333333332110 1 133434466766666 5689999999996
No 235
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.81 E-value=9.2 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.7
Q ss_pred CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 217 QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 217 ~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
+||-..+.+..+.+.++| ++++=++
T Consensus 16 aag~~~~~~~~~~~~~~g~~g~v~~~ 41 (296)
T cd04740 16 ASGTFGFGEELSRVADLGKLGAIVTK 41 (296)
T ss_pred CCCCCCCHHHHHHHHhcCCceEEEEC
Confidence 677777999999999999 9998777
No 236
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.74 E-value=5.7 Score=43.50 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCcEEEECcCCC---ceEEEEecccCCcchhhhhc-cccC---Cc----cccccHHHHHHHHHcCCCEEEE
Q psy3862 172 EMVEELILSGADVIKVGIGPG---SVCTTRLKNKTSDFFLIQFY-SCIP---QA----GNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G---~~~~t~v~~~~~~~~~i~~i-~~~p---~a----GnV~t~~~a~~li~aGAdgvkV 240 (671)
+-++.|.++|+|.|-+..+.| .+..... ...++...+..+ ...+ .+ =|.++.+.++.+.++|+|.|||
T Consensus 29 ~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~-~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri 107 (337)
T PRK08195 29 AIARALDAAGVPVIEVTHGDGLGGSSFNYGF-GAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRV 107 (337)
T ss_pred HHHHHHHHcCCCEEEeecCCCCCCccccCCC-CCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEE
Confidence 567789999999999964322 1100000 001111111111 1111 11 1456778999999999999999
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcch
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~ 279 (671)
.. -|| ....+.++.+.++++|..+.
T Consensus 108 ~~----~~~----------e~~~~~~~i~~ak~~G~~v~ 132 (337)
T PRK08195 108 AT----HCT----------EADVSEQHIGLARELGMDTV 132 (337)
T ss_pred EE----ecc----------hHHHHHHHHHHHHHCCCeEE
Confidence 84 222 23457888888888775433
No 237
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.71 E-value=0.6 Score=46.66 Aligned_cols=74 Identities=28% Similarity=0.291 Sum_probs=48.0
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECc-CCCceEEEEecccCC-c--chhhhhc----cccC--CccccccHHHHHHHH
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGI-GPGSVCTTRLKNKTS-D--FFLIQFY----SCIP--QAGNVVTGEMVEELI 231 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~~~t~v~~~~~-~--~~~i~~i----~~~p--~aGnV~t~~~a~~li 231 (671)
.+++..+.|.+.+..+.+.|+|+|.++. -++. .++..+ . +..+..+ ..+| +.||| +.+.+..++
T Consensus 105 ~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~ 178 (212)
T PRK00043 105 AIIGLSTHTLEEAAAALAAGADYVGVGPIFPTP-----TKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL 178 (212)
T ss_pred CEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC-----CCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence 4555566788888888999999998753 1110 001000 0 1122222 1245 79999 789999999
Q ss_pred HcCCCEEEEc
Q psy3862 232 LSGADVIKVG 241 (671)
Q Consensus 232 ~aGAdgvkVG 241 (671)
++|||++-+|
T Consensus 179 ~~Ga~gv~~g 188 (212)
T PRK00043 179 EAGADGVAVV 188 (212)
T ss_pred HcCCCEEEEe
Confidence 9999999777
No 238
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=89.69 E-value=9 Score=41.63 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.5
Q ss_pred Ccccc-ccHHHHHHHHHcCCCEEEEc
Q psy3862 217 QAGNV-VTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 217 ~aGnV-~t~~~a~~li~aGAdgvkVG 241 (671)
++|+. .+++..+.+.++|+.+|-++
T Consensus 18 ASg~~~~~~e~~~~~~~~G~Gavv~k 43 (325)
T cd04739 18 SASPLSRNLDNIRRLEDAGAGAIVLP 43 (325)
T ss_pred CCcCCCCCHHHHHHHHHCCCcEEEec
Confidence 56888 68899999999999999877
No 239
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.55 E-value=1.6 Score=46.55 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT 223 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t 223 (671)
+.+.+++.|+..|...++-.-+.|.++++.++++|+|+|-+|--.- .++++ .++++. ..| ++||| |
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s~----e~l~~------av~~~~~~~~leaSGGI-~ 248 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMTP----DTLRE------AVAIVAGRAITEASGRI-T 248 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCCH----HHHHH------HHHHhCCCceEEEECCC-C
Confidence 5567777777777555666677899999999999999998874221 01110 011111 122 78888 8
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.+..+.|+|.+-+|
T Consensus 249 ~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 249 PETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHHHHHHhcCCCEEEeC
Confidence 899999999999999777
No 240
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.39 E-value=3.8 Score=42.61 Aligned_cols=121 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E------------------
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N------------------ 167 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~------------------ 167 (671)
|+.++-|+. +.+.+++++.. +++.+++....-. -.+.++++.+.|+.-.++.. .
T Consensus 76 pv~~~GGi~--s~~~~~~~l~~--Ga~~Viigt~~l~---~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 76 PLTVGGGIR--SVEDARRLLRA--GADKVSINSAAVA---NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CEEeeCCCC--CHHHHHHHHHc--CCCEEEEChhHhh---CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 455544553 34555566665 6777777654211 12344555555642112111 1
Q ss_pred ----eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH-cCC
Q psy3862 168 ----VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL-SGA 235 (671)
Q Consensus 168 ----v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~-aGA 235 (671)
....+.++.+.+.|+|.|.+-. ..|. ...+++.++..+. .+| ++|||.+.+-++.++. .||
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~-------~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~ 221 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDGT-------KNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGA 221 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC-------CCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCc
Confidence 1124677889999999886632 1121 1112344433332 356 7999999999999997 599
Q ss_pred CEEEEc
Q psy3862 236 DVIKVG 241 (671)
Q Consensus 236 dgvkVG 241 (671)
||+-+|
T Consensus 222 ~gvivg 227 (253)
T PRK02083 222 DAALAA 227 (253)
T ss_pred cEEeEh
Confidence 999998
No 241
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.34 E-value=1.7 Score=46.41 Aligned_cols=87 Identities=25% Similarity=0.273 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccC--CcchhhhhccccCCccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKT--SDFFLIQFYSCIPQAGN 220 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~--~~~~~i~~i~~~p~aGn 220 (671)
.+.+.++.+|+..|... |.--+.+.++++.++++|+|+|-+|.-.-.. +...++... ++. .+-++||
T Consensus 168 ~i~~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~-------~leaSGG 239 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERV-------KIEVSGG 239 (278)
T ss_pred HHHHHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCE-------EEEEECC
Confidence 45566666666556533 4446678999999999999999888632110 001111110 111 0127999
Q ss_pred cccHHHHHHHHHcCCCEEEEc
Q psy3862 221 VVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 221 V~t~~~a~~li~aGAdgvkVG 241 (671)
| |.+.+.+..++|+|.+-+|
T Consensus 240 I-~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLG 259 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeC
Confidence 9 9999999999999999777
No 242
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.29 E-value=3.9 Score=43.98 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=64.6
Q ss_pred CceEEEeeccCCCC------------------------hHHHHHHHHHHHhC----CCceEEEEEe-----cc----HHH
Q psy3862 131 EIEYICLDVANGYT------------------------QTFVDFVRRIREMY----PKHVIIAGNV-----VT----GEM 173 (671)
Q Consensus 131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~----P~~~li~g~v-----~t----~e~ 173 (671)
+.|.|-++.+||+. +-+.+.++.+|+.. |...++-..- .+ .+.
T Consensus 154 GfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~l 233 (327)
T cd02803 154 GFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEI 233 (327)
T ss_pred CCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHH
Confidence 77888887777651 11355666677654 2223333211 12 345
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEec----ccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLK----NKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~----~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG 241 (671)
++.|.++|+|.|.+............. .....+..+..++ .+| +.||+.|.+.+..+++. |||.|-+|
T Consensus 234 a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 234 AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 778899999999886533211110000 0001122222232 356 68999999999999998 79998766
No 243
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.18 E-value=11 Score=39.93 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=22.9
Q ss_pred cCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862 449 TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 449 v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
+++.++++.+..=.++..+|| |+| .-|.+++.
T Consensus 183 ~vp~~la~~It~~l~IPtIGI-GaG-~~cDGQvL 214 (261)
T PF02548_consen 183 CVPAELAKAITEALSIPTIGI-GAG-PGCDGQVL 214 (261)
T ss_dssp SBBHHHHHHHHHHSSS-EEEE-SS--STSSEEEE
T ss_pred cCHHHHHHHHHHhCCCCEEec-CCC-CCCCceEE
Confidence 468888888754458888996 999 77888753
No 244
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.16 E-value=6 Score=40.88 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=24.0
Q ss_pred CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 217 QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 217 ~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++|||.+.+.++.++.+||+++-||
T Consensus 78 ~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 78 VGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred EcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 7999999999999999999999888
No 245
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.14 E-value=8.4 Score=40.19 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCcEE-EE--CcC-CCceEEEEecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVI-KV--GIG-PGSVCTTRLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~I-vV--dga-~G~~~~t~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.|+.+.+.|+|-+ ++ |++ .|+. .++.++..+. .+| ++|||-+.+.++.++++|||-|-+|
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a~~g~~---------~n~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKAIENSV---------ENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS 102 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcccCCc---------chHHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 377888889999954 23 332 2321 2333333331 245 7999999999999999999987666
No 246
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.91 E-value=3.4 Score=44.60 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=17.6
Q ss_pred eccccCchhHHH-HH-HcCCcEEEECc
Q psy3862 445 DGGCTSPGDVAK-AM-GAGADFVMLGG 469 (671)
Q Consensus 445 ~gG~v~t~~~a~-~l-~aGAd~V~vG~ 469 (671)
.|| +.+.+-+. ++ ..|||+||+|.
T Consensus 198 nGg-I~~~~da~~~l~~~gad~VmigR 223 (319)
T TIGR00737 198 NGD-IFSPEDAKAMLETTGCDGVMIGR 223 (319)
T ss_pred eCC-CCCHHHHHHHHHhhCCCEEEECh
Confidence 455 56666655 66 68999999986
No 247
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.90 E-value=1.9 Score=45.08 Aligned_cols=68 Identities=29% Similarity=0.276 Sum_probs=37.8
Q ss_pred hhhHHHHHHcCCcEEEEcccccc--ccccccccccccccccccccccccccC-c-eeeccccCchhHHHHHHcCCcEEEE
Q psy3862 392 PGDVAKAMGAGADFVMLGGMFAG--HDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 392 ~~~~~~l~~aG~d~i~id~~a~g--h~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
+....++.++|++++.--|.--| .....-+.++ .+++..+ . ++.||+-.+.++.++|+.|||+|.|
T Consensus 134 ~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~----------~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR----------IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH----------HHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 35556667889999976333333 2111112222 2222211 1 4466654445555589999999999
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 204 ~S 205 (248)
T cd04728 204 NT 205 (248)
T ss_pred Ch
Confidence 85
No 248
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=88.84 E-value=2 Score=45.52 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=34.1
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCCccccceecccCcch-hhhHHHHHHHhhhcCC
Q psy3862 223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ-FSAVLECADAAHGLGG 276 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~ 276 (671)
..+++..++++|++.+++-+...- ...+...+-...+ +.-+.++.+.|+++|.
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd-~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~ 133 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWD-LHVTEALGTTLEENLAMIRDSVAYLKSHGR 133 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCH-HHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 446788899999999988754322 2234445544443 3456778888887653
No 249
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=88.75 E-value=0.35 Score=61.19 Aligned_cols=105 Identities=23% Similarity=0.177 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccc----------ccccccccc-cccc
Q psy3862 363 KYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFA----------GHDQSGGEL-TNIE 426 (671)
Q Consensus 363 r~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~----------gh~~~~~~~-~~~~ 426 (671)
-.||+||++..|.++++.-+ .++.+....-.+++. ..+||+|+|+|||.-- -|.--+.++ +...
T Consensus 976 diySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~ 1055 (1485)
T PRK11750 976 DIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAET 1055 (1485)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHH
Confidence 35688998888876544321 222222222244553 4689999999996331 121111111 0000
Q ss_pred ccccccccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 427 YMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 427 ~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
. ++=....+|+.+.=+.+||.....|+++++..|||.|-+|
T Consensus 1056 ~-~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750 1056 H-QALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred H-HHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccc
Confidence 0 0001112233333367899999999999999999998766
No 250
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.65 E-value=7 Score=40.49 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=74.3
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE------Eec-------c---
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG------NVV-------T--- 170 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g------~v~-------t--- 170 (671)
|+.++-|+ +..+.+++++.+ +++-+++.++-- .-.++++++.+.||.- ++.+ .+. +
T Consensus 78 pi~vGGGI--rs~e~v~~~l~~--Ga~kvvigt~a~---~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~ 149 (234)
T PRK13587 78 DIEVGGGI--RTKSQIMDYFAA--GINYCIVGTKGI---QDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELN 149 (234)
T ss_pred eEEEcCCc--CCHHHHHHHHHC--CCCEEEECchHh---cCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCC
Confidence 45554444 456778888887 778888765421 2244566666667642 2222 110 1
Q ss_pred -HHHHHHHHHCCCcEEEE-Cc-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 -GEMVEELILSGADVIKV-GI-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 -~e~a~~Li~AGaD~IvV-dg-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+-++.+.+.|+..+.+ |. ..|+ ..-+++.++..+. .+| ++||+.+.+.++.++++|++++-||
T Consensus 150 ~~~~~~~~~~~g~~~ii~tdi~~dGt-------~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 150 LFSFVRQLSDIPLGGIIYTDIAKDGK-------MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcCC-------CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 46677888889875543 32 2221 1124554444442 346 7999999999999999999999998
No 251
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.65 E-value=3.7 Score=43.52 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=28.0
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862 223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG 276 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~ 276 (671)
..+-...+.++|+|.||+...... +.-+.++.+.++++|.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGK 132 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCC
Confidence 345566677889999999754433 5667778888887663
No 252
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.49 E-value=2.3 Score=45.00 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 227 a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
+++++++|||+|-+-+-+||- .+ .-|+.-+.++++.|+++|.++++
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~---~E-----~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSE---YE-----HQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCH---HH-----HHHHHHHHHHHHHHHHhCCcEEE
Confidence 567899999999999999952 11 45788888999999987765554
No 253
>PRK04302 triosephosphate isomerase; Provisional
Probab=88.32 E-value=2.9 Score=42.81 Aligned_cols=133 Identities=22% Similarity=0.288 Sum_probs=73.7
Q ss_pred CcceEecCCCCC-----CCHHHHHHHHHcCCeEEEc----cCCCHHHHHHHHhcCccc-ccceeeecccChhhHHHHHHc
Q psy3862 332 GVPIIAANMDTV-----GTFEMAKHLAKHGLFTTIH----KYYTLEEWKAFAVQNPDV-IKHVADGGCTSPGDVAKAMGA 401 (671)
Q Consensus 332 ~iPiIaa~MDtV-----~~~~mA~~la~~Gglgvih----r~~~~e~~~~~v~~~~~~-~~~v~~~~~~~~~~~~~l~~a 401 (671)
++|+++=++|.. |....+..+...|.=++|= |..+.++..+++....+. +..+. ...+.++...+.+.
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~~~~~~~~~~~ 133 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNNPETSAAAAAL 133 (223)
T ss_pred CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCCHHHHHHHhcC
Confidence 689999998884 3444577777777766664 347777766666543321 11121 11134666666778
Q ss_pred CCcEEEEccc-ccccccccc-ccccccccccccccccccccC--ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862 402 GADFVMLGGM-FAGHDQSGG-ELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAK-AMGAGADFVMLGG 469 (671)
Q Consensus 402 G~d~i~id~~-a~gh~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~-~l~aGAd~V~vG~ 469 (671)
+.|+|.+-.. +.|.....- ..-..++. .++.+++... .++.||-|.+.+.++ ++..|||+|.||.
T Consensus 134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~---~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 134 GPDYVAVEPPELIGTGIPVSKAKPEVVED---AVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred CCCEEEEeCccccccCCCCCcCCHHHHHH---HHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 9999987532 233321000 00000111 1122333221 255566677888777 5679999999984
No 254
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=87.99 E-value=1.8 Score=42.71 Aligned_cols=68 Identities=32% Similarity=0.413 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
..+.+.+.+++ ++|.|-+|.. .++.+.+.++.++...|...+.+....+.+.+....+.|||+|.+.+
T Consensus 89 ~~ee~~ea~~~--g~d~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 89 NLEEAEEALEA--GADIIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp SHHHHHHHHHT--T-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred CHHHHHHHHHh--CCCEEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 46778888888 7899999955 46777778887777788877777666789999999999999997743
No 255
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.93 E-value=8.8 Score=39.97 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=65.6
Q ss_pred CceEEEeeccCC------CChHHHHHHHHHHHhCCCceEEEEE-eccHHHHHHHHHCCCcEEEECcCC-CceEEEEeccc
Q psy3862 131 EIEYICLDVANG------YTQTFVDFVRRIREMYPKHVIIAGN-VVTGEMVEELILSGADVIKVGIGP-GSVCTTRLKNK 202 (671)
Q Consensus 131 ~~d~Ivld~a~G------~~~~~~~~ik~lr~~~P~~~li~g~-v~t~e~a~~Li~AGaD~IvVdga~-G~~~~t~v~~~ 202 (671)
+.++|-++.-.. ++...++..+.|.+. +..+-.- -.+.-.+++|+++|+.+|---+++ |++ +-
T Consensus 90 ~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e---GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg------~G 160 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE---GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG------RG 160 (247)
T ss_dssp S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT---T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---------
T ss_pred CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC---CCEEeecCCCCHHHHHHHHHCCCCEEEecccccccC------cC
Confidence 556665543321 123344445555432 3344332 357899999999999999876643 111 00
Q ss_pred CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862 203 TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA 271 (671)
Q Consensus 203 ~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~ 271 (671)
..+.+.+..+- .+| +-+||++...+..++++|||||.|. |-+ +-...| +..|...+.++-
T Consensus 161 i~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN--------TAi-A~A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 161 IQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN--------TAI-AKAKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES--------HHH-HTSSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh--------hHH-hccCCHHHHHHHHHHHHHHH
Confidence 11222222331 356 6889999999999999999999998 443 555666 555555555443
No 256
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=87.91 E-value=1.7 Score=45.56 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccc-cC----CccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC-IP----QAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~-~p----~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|.+...+ .. + .+...++.+.. .+ .+-.-.+.+++..+.++|++.+++.+...-
T Consensus 24 ~i~~~L~~~Gv~~iE~g~p~-~~------~--~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~ 94 (259)
T cd07939 24 AIARALDEAGVDEIEVGIPA-MG------E--EEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSD 94 (259)
T ss_pred HHHHHHHHcCCCEEEEecCC-CC------H--HHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCH
Confidence 55677888899998774211 00 0 00011111110 11 233335788899999999999999862221
Q ss_pred ccccceecccCcch-hhhHHHHHHHhhhcCC
Q psy3862 247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLGG 276 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~ 276 (671)
.. -+...+..+.+ +..+.++.+.|+++|.
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 124 (259)
T cd07939 95 IH-LAHKLGKDRAWVLDQLRRLVGRAKDRGL 124 (259)
T ss_pred HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 11 11233444444 3577788888887653
No 257
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=87.77 E-value=8.1 Score=40.92 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=93.7
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc------hhhhHHHHHHHhhhcCCcchhhhhhccceeec
Q psy3862 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP------QFSAVLECADAAHGLGGHIISFLTAMAQKIIN 291 (671)
Q Consensus 218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 291 (671)
.=|.-|+-.|+.+-++|+|.+-||=-.| ..-.|+| .=..++.+...+++..-.
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlg-------m~~lG~~~t~~vtldem~~h~~aV~rg~~~~-------------- 77 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLG-------MVVLGHDSTLPVTVADMIYHTAAVKRGAPNC-------------- 77 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHh-------HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCc--------------
Confidence 4456678888888899999999993333 3334543 333445555555432111
Q ss_pred cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC--HHH
Q psy3862 292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT--LEE 369 (671)
Q Consensus 292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~--~e~ 369 (671)
-+-.++|+.|=. |.-.-.+-|..+-+..|.-.++---. ..+
T Consensus 78 ------------------------------------~vv~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~ 120 (263)
T TIGR00222 78 ------------------------------------LIVTDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGGEWLVE 120 (263)
T ss_pred ------------------------------------eEEeCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCcHhHHH
Confidence 112356766432 32233445777777777777774332 223
Q ss_pred HHHHHhcC--ccc-----cc-ceeeec-----ccChhh-------HHHHHHcCCcEEEEccccccccccccccccccccc
Q psy3862 370 WKAFAVQN--PDV-----IK-HVADGG-----CTSPGD-------VAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMF 429 (671)
Q Consensus 370 ~~~~v~~~--~~~-----~~-~v~~~~-----~~~~~~-------~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~ 429 (671)
.++.+.+. |-+ .+ .+..-+ +.++++ ...+.+||+|.|++-
T Consensus 121 ~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE-------------------- 180 (263)
T TIGR00222 121 TVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE-------------------- 180 (263)
T ss_pred HHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc--------------------
Confidence 33333321 211 11 122222 223322 233357999999986
Q ss_pred cccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862 430 FPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI 482 (671)
Q Consensus 430 ~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v 482 (671)
.++.+.++.+..-.++-.+|| |+| .-|.+++.
T Consensus 181 -------------------~vp~~~a~~It~~l~iP~iGI-GaG-~~~dGQvl 212 (263)
T TIGR00222 181 -------------------CVPVELAAKITEALAIPVIGI-GAG-NVCDGQIL 212 (263)
T ss_pred -------------------CCcHHHHHHHHHhCCCCEEee-ccC-CCCCceee
Confidence 234577777766667889996 999 88988763
No 258
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=87.67 E-value=2.1 Score=45.56 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~ 222 (671)
.+.+.++.+|+..|. .++.--+.+.++++.++++|+|+|-.|.-.-.. +...++...+.+ .+-++|||
T Consensus 174 ~i~~av~~~r~~~~~-~kIeVEv~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~-------~leasGGI- 244 (277)
T TIGR01334 174 DWGGAIGRLKQTAPE-RKITVEADTIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIP-------TLAAAGGI- 244 (277)
T ss_pred cHHHHHHHHHHhCCC-CCEEEECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCE-------EEEEECCC-
Confidence 466777777777775 345556679999999999999999988422110 011111111111 01279998
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+.+...+|+|.+-+|
T Consensus 245 ~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 245 NPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHhcCCCEEEeC
Confidence 8899999999999999776
No 259
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=87.65 E-value=13 Score=36.66 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=41.6
Q ss_pred ccChhhHHHHHHcCCcEEEEcccccccc--c--c--ccccccccccccccccccccccCceeeccccCchhHHHHHHcCC
Q psy3862 389 CTSPGDVAKAMGAGADFVMLGGMFAGHD--Q--S--GGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGA 462 (671)
Q Consensus 389 ~~~~~~~~~l~~aG~d~i~id~~a~gh~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGA 462 (671)
.-+.++..+..+.|+|+++++-+.+--+ . . .++.++.+...+|. .+-+..|| +...++.+++.+|+
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~-------~pv~a~GG-I~~~~~~~~~~~G~ 174 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSID-------IPIVAIGG-ITLENAAEVLAAGA 174 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC-------CCEEEECC-cCHHHHHHHHHcCC
Confidence 3456777777889999999863322111 1 1 12332222221110 11134566 46666666789999
Q ss_pred cEEEECc
Q psy3862 463 DFVMLGG 469 (671)
Q Consensus 463 d~V~vG~ 469 (671)
|+|-+|.
T Consensus 175 ~gva~~~ 181 (196)
T TIGR00693 175 DGVAVVS 181 (196)
T ss_pred CEEEEhH
Confidence 9999885
No 260
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.39 E-value=1.1 Score=46.47 Aligned_cols=66 Identities=27% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--CceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 396 AKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 396 ~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.+|.++|+..++-=|+--|-..-..+.. .+..+++.+ +=+|++|+=.+-+.+++|+.|+|+|+|..
T Consensus 138 krL~d~GcaavMPlgsPIGSg~Gi~n~~--------~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 138 KRLEDAGCAAVMPLGSPIGSGRGIQNPY--------NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHTT-SEBEEBSSSTTT---SSTHH--------HHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHCCCCEEEecccccccCcCCCCHH--------HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 5568899999987765544432222210 111122222 22689999888899999999999999985
No 261
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=87.39 E-value=5 Score=44.01 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
+.+.++.++ +.+.+=+... ...-.+.++.+++.-| .++++--..+...|...+++|+|.|.+
T Consensus 46 ~Qi~~L~~a--GceiVRvav~---~~~~a~al~~I~~~~~-iPlvADIHFd~~lAl~a~~~G~~~iRI------------ 107 (360)
T PRK00366 46 AQIKRLARA--GCEIVRVAVP---DMEAAAALPEIKKQLP-VPLVADIHFDYRLALAAAEAGADALRI------------ 107 (360)
T ss_pred HHHHHHHHc--CCCEEEEccC---CHHHHHhHHHHHHcCC-CCEEEecCCCHHHHHHHHHhCCCEEEE------------
Confidence 455666666 6665544322 2455666777776554 456665557889999999999999966
Q ss_pred cccCCcchhhhhccccCCcccccc-HHHHHHHHHcCC---CEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcC
Q psy3862 200 KNKTSDFFLIQFYSCIPQAGNVVT-GEMVEELILSGA---DVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG 275 (671)
Q Consensus 200 ~~~~~~~~~i~~i~~~p~aGnV~t-~~~a~~li~aGA---dgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~ 275 (671)
-=||+.. .+..+.++++-= -.+|+|+..||.- -+...--|.|...|..|.|-.-
T Consensus 108 -----------------NPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~-~~~~~~yg~~t~eamveSAl~~---- 165 (360)
T PRK00366 108 -----------------NPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLE-KDLLEKYGEPTPEALVESALRH---- 165 (360)
T ss_pred -----------------CCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccCh-HHHHHHcCCCCHHHHHHHHHHH----
Confidence 1367766 666666554321 2689999999985 5555556778777777766321
Q ss_pred CcchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862 276 GHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK 310 (671)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~ 310 (671)
+..-..++|+|+.|-=|-|++.
T Consensus 166 -------------~~~le~~~f~~iviS~KsS~v~ 187 (360)
T PRK00366 166 -------------AKILEELGFDDIKISVKASDVQ 187 (360)
T ss_pred -------------HHHHHHCCCCcEEEEEEcCCHH
Confidence 1123468899998876666554
No 262
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.36 E-value=1.7 Score=45.90 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=18.5
Q ss_pred eeccccCchhHHHHHHcCCcEEEECc
Q psy3862 444 VDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 444 i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
..||+-...++.+.+.+|||.|++|.
T Consensus 248 a~GGI~~~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 248 GVGGIDSGEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred EECCCCCHHHHHHHHHcCccHheEcH
Confidence 34664334555667899999999985
No 263
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.35 E-value=1.9 Score=45.91 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
..+.+.+.+++ ++|.|-+|.. .++.+.+.++.++..+|+..+.+....|++.+++..+.|||+|++..
T Consensus 191 tleea~~A~~~--GaDiI~LDn~--~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNA--GADIVMCDNM--SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 35566666666 7788888744 45666667765544567766655433499999999999999998743
No 264
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=87.31 E-value=5.2 Score=45.78 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcch
Q psy3862 227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279 (671)
Q Consensus 227 a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~ 279 (671)
++.+.++|+|.+++.....- +.-+..+.+++++.|.++.
T Consensus 101 v~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~ 139 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQ 139 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEE
Confidence 67788999999999854332 3445666777877765443
No 265
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.27 E-value=2 Score=45.25 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|-+.. +..+. ...+.+.... ....+......+++..++++|++.|++-+...-
T Consensus 26 ~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~--------~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~ 96 (262)
T cd07948 26 EIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLK--------AKILTHIRCHMDDARIAVETGVDGVDLVFGTSP 96 (262)
T ss_pred HHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCC--------CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCH
Confidence 567788999999998864 22210 0001100000 000344578899999999999999988763221
Q ss_pred ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862 247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG 275 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~ 275 (671)
... +...+-.+.+ +..+.++.+.|+++|
T Consensus 97 ~~~-~~~~~~~~~e~~~~~~~~i~~a~~~G 125 (262)
T cd07948 97 FLR-EASHGKSITEIIESAVEVIEFVKSKG 125 (262)
T ss_pred HHH-HHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 111 1123444445 555667777777654
No 266
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.26 E-value=10 Score=41.45 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCcEEEECcCCC---ceEEEEe-cccCCcchhhhhc-cccC-------CccccccHHHHHHHHHcCCCEEE
Q psy3862 172 EMVEELILSGADVIKVGIGPG---SVCTTRL-KNKTSDFFLIQFY-SCIP-------QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G---~~~~t~v-~~~~~~~~~i~~i-~~~p-------~aGnV~t~~~a~~li~aGAdgvk 239 (671)
+-++.|.++|+|.|-+..+.| ++. .. ....++...+..+ ..++ .--|+++.+.++.+.++|+|.||
T Consensus 28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~--~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~ir 105 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVTHGDGLGGSSF--NYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVR 105 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCccc--cCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEE
Confidence 567789999999999863322 110 00 0001111111111 1111 12356788999999999999999
Q ss_pred EcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862 240 VGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277 (671)
Q Consensus 240 VG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~ 277 (671)
|... || ....+.+..+.++++|..
T Consensus 106 i~~~----~~----------e~d~~~~~i~~ak~~G~~ 129 (333)
T TIGR03217 106 VATH----CT----------EADVSEQHIGMARELGMD 129 (333)
T ss_pred EEec----cc----------hHHHHHHHHHHHHHcCCe
Confidence 8852 22 122466778888876643
No 267
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=87.09 E-value=7.5 Score=40.82 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc---cccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862 171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY---SCIP--QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
.+.|+...++||++|-|.+-+-+- ..++..+..+ ..+| .=+.|.+..|...+..+|||+|-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F--------~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYF--------GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcC--------CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 477888999999999776622110 0011111111 1245 467889999999999999999943
No 268
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=87.07 E-value=1.2 Score=44.27 Aligned_cols=76 Identities=29% Similarity=0.299 Sum_probs=48.5
Q ss_pred ceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccC-C--cchhhhhcc----ccC--CccccccHHHHHHHH
Q psy3862 161 HVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKT-S--DFFLIQFYS----CIP--QAGNVVTGEMVEELI 231 (671)
Q Consensus 161 ~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~-~--~~~~i~~i~----~~p--~aGnV~t~~~a~~li 231 (671)
..++...+.+.+.+..+.+.|+|++.++- .-.+..++.. + .+..+..+. .+| +.||| +.+.+..++
T Consensus 96 ~~~ig~s~h~~~e~~~a~~~g~dyi~~~~----v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~ 170 (196)
T TIGR00693 96 DKIIGVSTHNLEELAEAEAEGADYIGFGP----IFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL 170 (196)
T ss_pred CCEEEEeCCCHHHHHHHhHcCCCEEEECC----ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence 34666677888888888999999998742 1001111110 1 111111111 245 68999 789999999
Q ss_pred HcCCCEEEEc
Q psy3862 232 LSGADVIKVG 241 (671)
Q Consensus 232 ~aGAdgvkVG 241 (671)
++|+|||=+|
T Consensus 171 ~~G~~gva~~ 180 (196)
T TIGR00693 171 AAGADGVAVV 180 (196)
T ss_pred HcCCCEEEEh
Confidence 9999999777
No 269
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=86.88 E-value=20 Score=37.55 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=99.8
Q ss_pred HHHHHHHHHCCCcEE---EECcCC-CceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVI---KVGIGP-GSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~I---vVdga~-G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.|+...+.||..+ .+|+|. |.. .+...+.-+ . ..| ++|||=|.+.+.+|+++|++-|-+|
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~---------~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiG 104 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGP---------RNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIG 104 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCc---------ccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence 478888888888754 556655 211 122222222 1 234 7999999999999999999999999
Q ss_pred ccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeee
Q psy3862 242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTF 321 (671)
Q Consensus 242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l 321 (671)
-.++-.|.+ +.++++.+|.+|+. +|..+-
T Consensus 105 -----------t~av~~p~~-----v~~~~~~~g~rivv-----------------------------------~lD~r~ 133 (241)
T COG0106 105 -----------TAAVKNPDL-----VKELCEEYGDRIVV-----------------------------------ALDARD 133 (241)
T ss_pred -----------cceecCHHH-----HHHHHHHcCCcEEE-----------------------------------EEEccC
Confidence 344666654 45666677655554 111111
Q ss_pred eeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC------------HHHHHHHHhcCcccccceeeecc
Q psy3862 322 TFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT------------LEEWKAFAVQNPDVIKHVADGGC 389 (671)
Q Consensus 322 ~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~------------~e~~~~~v~~~~~~~~~v~~~~~ 389 (671)
.+. .-+-|. .+-.++-.++++.+...|.-++|+-.-+ ..+..+.+ . ++ +.+|||
T Consensus 134 g~v-av~GW~-------e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~----ip-viaSGG 199 (241)
T COG0106 134 GKV-AVSGWQ-------EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-D----IP-VIASGG 199 (241)
T ss_pred Ccc-cccccc-------ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-C----cC-EEEecC
Confidence 100 000111 1122345689999999999999984332 22233322 1 22 455666
Q ss_pred c-ChhhHHHHHHc-CCcEEEEc
Q psy3862 390 T-SPGDVAKAMGA-GADFVMLG 409 (671)
Q Consensus 390 ~-~~~~~~~l~~a-G~d~i~id 409 (671)
+ +-+|+..|.+. |+.=+++.
T Consensus 200 v~s~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 200 VSSLDDIKALKELSGVEGVIVG 221 (241)
T ss_pred cCCHHHHHHHHhcCCCcEEEEe
Confidence 6 56999999777 87777765
No 270
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=86.88 E-value=3.9 Score=42.51 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=64.1
Q ss_pred HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE-CcCCCceEEEEe
Q psy3862 121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV-GIGPGSVCTTRL 199 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV-dga~G~~~~t~v 199 (671)
.++++.++ +++.+++...+ .+...+.++.+++.......++.-..+.++.+.+.+...|.|-+ ...+++...+..
T Consensus 96 fi~~~~~a--G~~giiipDl~--~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 96 FLRDAKEA--GVDGLIIPDLP--PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHC--CCcEEEECCCC--HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 35556666 77877664332 34444555555554332233333334578899888855665543 333333211100
Q ss_pred cccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 200 KNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 200 ~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.. .....+..++ ..| ++|||-+.+.++.+.++ |||+-||
T Consensus 172 ~~--~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 PD--DLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred Ch--hHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 00 0011122221 345 79999999999999999 9999888
No 271
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=86.87 E-value=2 Score=39.77 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccc
Q psy3862 347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN 424 (671)
Q Consensus 347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~ 424 (671)
.|+..|-+.+|+-+++ .+.++|+..+.+.+ .++|+++|=.+...|....-+++.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~------------------------~~~d~V~iS~~~~~~~~~~~~~~~ 72 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ------------------------EDVDVIGLSSLSGGHMTLFPEVIE 72 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------------------------cCCCEEEEcccchhhHHHHHHHHH
Confidence 4677788889999888 56777777776643 355666664222233333333333
Q ss_pred ccccccc-cccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 425 IEYMFFP-LVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 425 ~~~~~~~-~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
.++...| .+ .++.||+..+.+..++.++|.|.+ +++|
T Consensus 73 ~L~~~~~~~i--------~i~~GG~~~~~~~~~~~~~G~d~~----~~~~ 110 (122)
T cd02071 73 LLRELGAGDI--------LVVGGGIIPPEDYELLKEMGVAEI----FGPG 110 (122)
T ss_pred HHHhcCCCCC--------EEEEECCCCHHHHHHHHHCCCCEE----ECCC
Confidence 3333211 11 156888877777777889999988 4666
No 272
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.82 E-value=10 Score=40.08 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=76.3
Q ss_pred ccCceEEecCCCcc------ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceE-EecCCChhhHHHHHHH
Q psy3862 54 YQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-VSSGISAKDLAGLKEI 125 (671)
Q Consensus 54 ~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~-v~~G~~~~d~~rl~~l 125 (671)
..++|++ -|++. +..++...+++.|--|+|=..+++||..++..+.. .-+.++. +++..+ .+|++.+
T Consensus 87 ~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~---~eri~~i 161 (258)
T PRK13111 87 DPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT---DERLKKI 161 (258)
T ss_pred CCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHH
Confidence 3567987 57763 33567777778877798666788887666653221 1122333 222222 3566666
Q ss_pred HHhCCCceEEEeeccCC-------CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 126 LAALPEIEYICLDVANG-------YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 126 ~~a~~~~d~Ivld~a~G-------~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.+..++ +|.+-...| .+....+.++++|+.. ...+++| .+.+++.++.+.+. ||.+++.+
T Consensus 162 ~~~s~g--fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 162 ASHASG--FVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHhCCC--cEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 665443 332211112 2355667888887744 3444445 67799999999986 99998843
No 273
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.74 E-value=4.3 Score=42.69 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=35.9
Q ss_pred hhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC
Q psy3862 262 SAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD 341 (671)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD 341 (671)
.-+++.|+.++++|++++- +=.|| .|++..|-....++ -|..-..-+..+|+|+++..||
T Consensus 29 e~~~~~a~~~~~~g~~~~r-------------~g~~k------pRts~~sf~G~G~~-gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFR-------------GGAYK------PRTSAASFQGLGLQ-GIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred HHHHHHHHHHHHcCCCEEE-------------ecccC------CCCCCcccCCCCHH-HHHHHHHHHHHcCCCEEEeeCC
Confidence 3477888888888887664 44555 45555553333332 2211111134679999998888
Q ss_pred C
Q psy3862 342 T 342 (671)
Q Consensus 342 t 342 (671)
.
T Consensus 89 ~ 89 (250)
T PRK13397 89 E 89 (250)
T ss_pred H
Confidence 4
No 274
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=86.71 E-value=9.7 Score=44.37 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCeEEEccCC---------CHHHHHHHHhcCcccccceeeecccChhhHHHHHH-cCCcEEEEcccccc
Q psy3862 346 FEMAKHLAKHGLFTTIHKYY---------TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG-AGADFVMLGGMFAG 414 (671)
Q Consensus 346 ~~mA~~la~~Gglgvihr~~---------~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~-aG~d~i~id~~a~g 414 (671)
.+.|.++.++|.=.+|.-.. ++| +.+.+++..+ ++.++.+|..+.+|+.++++ .|+|....-+..|-
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt~~G~d~~-l~~~v~~~~~-ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQGKGFDIE-LVKLVSDAVT-IPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred HHHHHHHHhcCCCEEEEeeccccccccCcCHH-HHHHHHhhCC-CCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 68899999998777777444 333 3333333211 34455455557899998865 67888776544443
No 275
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=86.60 E-value=6.6 Score=39.62 Aligned_cols=111 Identities=24% Similarity=0.238 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCceEE--Eeecc---CCCChHHHHHHHHHHHhCCCce-E-EEEEe-cc----HHHHHHHHHCCCcEEEEC
Q psy3862 121 GLKEILAALPEIEYI--CLDVA---NGYTQTFVDFVRRIREMYPKHV-I-IAGNV-VT----GEMVEELILSGADVIKVG 188 (671)
Q Consensus 121 rl~~l~~a~~~~d~I--vld~a---~G~~~~~~~~ik~lr~~~P~~~-l-i~g~v-~t----~e~a~~Li~AGaD~IvVd 188 (671)
.+++.+.. +++.+ +++.. .++.+...+.++++++...... + +.... .+ ...++.+.++|+|+|+..
T Consensus 74 eve~A~~~--GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 74 EAREAIAD--GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHc--CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 35555555 55554 44432 2233445555666655432222 1 11111 12 244778889999999997
Q ss_pred cCCCceEEEEecccCCcchhh-hhcc-ccC--CccccccHHHHHHHHHcCCCEE
Q psy3862 189 IGPGSVCTTRLKNKTSDFFLI-QFYS-CIP--QAGNVVTGEMVEELILSGADVI 238 (671)
Q Consensus 189 ga~G~~~~t~v~~~~~~~~~i-~~i~-~~p--~aGnV~t~~~a~~li~aGAdgv 238 (671)
++-+....+ .+++.++ +.+. .+| ++||+-|.++++.++++||+-+
T Consensus 152 TG~~~~~at-----~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 152 TGFGPGGAT-----VEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCCCCCCC-----HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 543211000 0011111 1111 234 7999999999999999999843
No 276
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=86.54 E-value=3 Score=42.96 Aligned_cols=167 Identities=26% Similarity=0.300 Sum_probs=88.0
Q ss_pred HHHHHHHHHCCCcEE---EECcC-CCceEEEEecccCCcchhhhhcc-c--cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSGADVI---KVGIG-PGSVCTTRLKNKTSDFFLIQFYS-C--IP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AGaD~I---vVdga-~G~~~~t~v~~~~~~~~~i~~i~-~--~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.|+.+.+.|+|-+ .+|++ .|.. +++.++.-+. . +| +.|||-+.+.++.++++||+-|-+|
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa~~g~~---------~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvig 102 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAAKEGRG---------SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIG 102 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHHCCTHH---------HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEEEEccCcccCch---------hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeC
Confidence 377888888999955 33333 2321 1333333332 2 45 7999999999999999999988777
Q ss_pred ccCCCccccceecccCcchhhhHHHHHHHhhhcCC-cchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862 242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG-HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT 320 (671)
Q Consensus 242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~ 320 (671)
|. .+=.|.+ + .+.++.+|- +|+. ++|+ ...
T Consensus 103 --------t~---~~~~~~~--l---~~~~~~~g~~~ivv-------------slD~--------------------~~g 133 (229)
T PF00977_consen 103 --------TE---ALEDPEL--L---EELAERYGSQRIVV-------------SLDA--------------------RDG 133 (229)
T ss_dssp --------HH---HHHCCHH--H---HHHHHHHGGGGEEE-------------EEEE--------------------EET
T ss_pred --------hH---HhhchhH--H---HHHHHHcCcccEEE-------------EEEe--------------------eec
Confidence 22 2333433 2 333444443 3333 1111 111
Q ss_pred eeeccCCceeeCcceEecCCC--CCCCHHHHHHHHHcCCeEEEc---------cCCCHHHHHHHHhcCcccccceeeecc
Q psy3862 321 FTFRNSGKTYQGVPIIAANMD--TVGTFEMAKHLAKHGLFTTIH---------KYYTLEEWKAFAVQNPDVIKHVADGGC 389 (671)
Q Consensus 321 l~~~~s~~~~~~iPiIaa~MD--tV~~~~mA~~la~~Gglgvih---------r~~~~e~~~~~v~~~~~~~~~v~~~~~ 389 (671)
. -..+..--+ .+.-.+++..|.++|.=.+|. .-.+.|- .+.+++.-+ + .+.++||
T Consensus 134 ~-----------~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~-~~~l~~~~~-~-~viasGG 199 (229)
T PF00977_consen 134 Y-----------KVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLEL-LKQLAEAVN-I-PVIASGG 199 (229)
T ss_dssp E-----------EEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHH-HHHHHHHHS-S-EEEEESS
T ss_pred e-----------EEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHH-HHHHHHHcC-C-CEEEecC
Confidence 0 111111111 133467888888888776766 2233332 333322111 2 3455666
Q ss_pred c-ChhhHHHHHHcCCcEEEEc
Q psy3862 390 T-SPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 390 ~-~~~~~~~l~~aG~d~i~id 409 (671)
+ +.+|+.++.+.|+|-..+.
T Consensus 200 v~~~~Dl~~l~~~G~~gvivg 220 (229)
T PF00977_consen 200 VRSLEDLRELKKAGIDGVIVG 220 (229)
T ss_dssp --SHHHHHHHHHTTECEEEES
T ss_pred CCCHHHHHHHHHCCCcEEEEe
Confidence 6 6799999999999888876
No 277
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=86.46 E-value=15 Score=36.74 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=64.1
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC-HHHHHHHHhcCcccccceeeecccChhhHHH--HHHcCCcEEEE
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT-LEEWKAFAVQNPDVIKHVADGGCTSPGDVAK--AMGAGADFVML 408 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~-~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~--l~~aG~d~i~i 408 (671)
.++++.-. +.+....+++.-++-.+|-|-+ ..+....+++.-. .+.+.+.+.....+.+. ....++|++.+
T Consensus 53 ~V~v~vn~-----~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 53 RVGVFVNE-----DLEEILEIAEELGLDVVQLHGDESPEYCAQLRARLG-LPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred EEEEEeCC-----CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcC-CcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 36666422 2566667777777777775533 2234444443100 12333344444444433 34569999999
Q ss_pred cccccc----cc-ccccccccccccccccccccccccCceeeccccCchhHHHHHHcC-CcEEEECc
Q psy3862 409 GGMFAG----HD-QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAG-ADFVMLGG 469 (671)
Q Consensus 409 d~~a~g----h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aG-Ad~V~vG~ 469 (671)
|....+ +. ....++++.+....|+ ++.|| +...++.++++.| +++|=|+.
T Consensus 127 dt~~~~~~Gg~g~~~~~~~l~~~~~~~Pv----------ilaGG-I~~~Nv~~~i~~~~~~gvdv~S 182 (203)
T cd00405 127 DSKSGGGGGGTGKTFDWSLLRGLASRKPV----------ILAGG-LTPDNVAEAIRLVRPYGVDVSS 182 (203)
T ss_pred cCCCCCCCCCCcceEChHHhhccccCCCE----------EEECC-CChHHHHHHHHhcCCCEEEcCC
Confidence 932211 11 1111222211112232 35677 5888899999988 99998874
No 278
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.22 E-value=2.4 Score=45.50 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 115 SAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
..+..+.+.+.+++ ++|+|-+|.. .++.+.+.++.+++.+|...+.+....+.+.+..+.++|||+|++..
T Consensus 202 Ev~tleea~eA~~~--GaD~I~LDn~--~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 202 ETETLEQVQEALEY--GADIIMLDNM--PVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred ECCCHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEch
Confidence 33456667677776 7899998833 35666666666655567766666555689999999999999997743
No 279
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=86.15 E-value=3.3 Score=44.35 Aligned_cols=87 Identities=10% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV 222 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~ 222 (671)
.+.+.++.+|+..|... +.--+.+.++++.++++|||+|-.|--.-.. +...+++..+.. .+-++|||
T Consensus 175 ~i~~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~-------~leaSGGI- 245 (284)
T PRK06096 175 DWSGAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHC-------TLSLAGGI- 245 (284)
T ss_pred cHHHHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCe-------EEEEECCC-
Confidence 45567777777666533 5556689999999999999999887422100 000010000110 01178998
Q ss_pred cHHHHHHHHHcCCCEEEEc
Q psy3862 223 TGEMVEELILSGADVIKVG 241 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG 241 (671)
|.+.+++...+|+|.+-+|
T Consensus 246 ~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 246 NLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHhcCCCEEEEC
Confidence 8999999999999999665
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.82 E-value=4 Score=40.84 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--Eecc-HHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862 121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG--NVVT-GEMVEELILSGADVIKVGIGPGSVCTT 197 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g--~v~t-~e~a~~Li~AGaD~IvVdga~G~~~~t 197 (671)
.++++.++ +++++++..... .....+.++..++. ....+.+ +..| .+.++.+.+.|+|++.+.. |...-+
T Consensus 68 ~~~~~~~~--Gad~i~vh~~~~-~~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~~~ 140 (206)
T TIGR03128 68 EAEQAFAA--GADIVTVLGVAD-DATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDEQA 140 (206)
T ss_pred HHHHHHHc--CCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCccc
Confidence 45566666 778887654321 12233444444432 1222222 2223 4788888899999998752 221000
Q ss_pred EecccCCcchhhh----hccccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKTSDFFLIQ----FYSCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~~~~~~i~----~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.. . ..+..+. .+...+ +.||| +.+.+..++++|||++-+|
T Consensus 141 ~~-~--~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vG 186 (206)
T TIGR03128 141 KG-Q--NPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVG 186 (206)
T ss_pred CC-C--CCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 00 0 0111111 111122 47999 8899999999999999887
No 281
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=85.75 E-value=2.1 Score=44.90 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--Cc
Q psy3862 145 QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QA 218 (671)
Q Consensus 145 ~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~a 218 (671)
...++..+.|.+. +..+-. --.+.-.+++|.++|+.+|---+++=.+ . .-..+-+.++.+. .+| +.
T Consensus 124 ~etl~Aae~Lv~e---GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g---~Gl~n~~~l~~i~e~~~vpVivd 195 (267)
T CHL00162 124 IGTLKAAEFLVKK---GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--G---QGLQNLLNLQIIIENAKIPVIID 195 (267)
T ss_pred HHHHHHHHHHHHC---CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--C---CCCCCHHHHHHHHHcCCCcEEEe
Confidence 4455555555332 233332 2257889999999999999766533110 0 0011222223331 244 79
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862 219 GNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA 271 (671)
Q Consensus 219 GnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~ 271 (671)
+||.|++.+..++++|||||-+. |-++ -...| +..|+..+.++-
T Consensus 196 AGIgt~sDa~~AmElGaDgVL~n--------SaIa-kA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 196 AGIGTPSEASQAMELGASGVLLN--------TAVA-QAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred CCcCCHHHHHHHHHcCCCEEeec--------ceee-cCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999776 4444 45566 445555444443
No 282
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=85.67 E-value=8 Score=40.40 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.+.++++.+..+.-.=++|.+.+.+.+++|+++|++.+++.+
T Consensus 64 ~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt 105 (241)
T COG0106 64 LEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGT 105 (241)
T ss_pred HHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEec
Confidence 455666655555445577788888888888888888888876
No 283
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.67 E-value=4 Score=43.52 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC--CccccccH
Q psy3862 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP--QAGNVVTG 224 (671)
Q Consensus 148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p--~aGnV~t~ 224 (671)
...++..|+..|. .++.-.+.+.++++.++++|+|+|-.|--. - ..+++ .++.+ ..+| +.||| |.
T Consensus 177 ~~av~~~r~~~~~-~~I~VEv~tleea~eA~~~gaD~I~LD~~~-~---e~l~~------~v~~~~~~i~leAsGGI-t~ 244 (277)
T PRK05742 177 AQAVAAAHRIAPG-KPVEVEVESLDELRQALAAGADIVMLDELS-L---DDMRE------AVRLTAGRAKLEASGGI-NE 244 (277)
T ss_pred HHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHcCCCEEEECCCC-H---HHHHH------HHHHhCCCCcEEEECCC-CH
Confidence 3445555655554 456556788999999999999999876211 0 00110 01111 1234 79999 89
Q ss_pred HHHHHHHHcCCCEEEEc
Q psy3862 225 EMVEELILSGADVIKVG 241 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG 241 (671)
+.+.++.++|+|++=+|
T Consensus 245 ~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 245 STLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999999777
No 284
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=85.13 E-value=4 Score=43.38 Aligned_cols=85 Identities=31% Similarity=0.399 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----cc-CCccc
Q psy3862 146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CI-PQAGN 220 (671)
Q Consensus 146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~-p~aGn 220 (671)
.+.+.+++.|+..|...++---+.+.++++.+++||+|+|-.|--.-. ++++ .++.+. .+ -+.||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~~e----~~~~------av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMSPE----ELKE------AVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCCHH----HHHH------HHHHhccCCceEEEEeCC
Confidence 477788888877777676666778999999999999999977642210 0100 011100 01 16788
Q ss_pred cccHHHHHHHHHcCCCEEEEc
Q psy3862 221 VVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 221 V~t~~~a~~li~aGAdgvkVG 241 (671)
| |.+.+.+....|+|-+-+|
T Consensus 243 I-t~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 243 I-TLENIREYAETGVDVISVG 262 (280)
T ss_pred C-CHHHHHHHhhcCCCEEEeC
Confidence 7 8889999999999999877
No 285
>PRK08508 biotin synthase; Provisional
Probab=85.08 E-value=6.3 Score=41.80 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277 (671)
Q Consensus 218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~ 277 (671)
.-|..+.+.++.|.++|+|.+-+++..+.- ..+.++. .-.+.-++++.+.||++|.+
T Consensus 96 s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~-~~~~i~~--~~~~~~~l~~i~~a~~~Gi~ 152 (279)
T PRK08508 96 CNGTASVEQLKELKKAGIFSYNHNLETSKE-FFPKICT--THTWEERFQTCENAKEAGLG 152 (279)
T ss_pred cCCCCCHHHHHHHHHcCCCEEcccccchHH-HhcCCCC--CCCHHHHHHHHHHHHHcCCe
Confidence 557779999999999999999998766431 1111211 12455678888888876644
No 286
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.03 E-value=7.6 Score=41.03 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=76.6
Q ss_pred cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcC-cccccceE-EecCCChhhHHHHHHHH
Q psy3862 55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQN-PDVIKHVA-VSSGISAKDLAGLKEIL 126 (671)
Q Consensus 55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~-p~~~~~~~-v~~G~~~~d~~rl~~l~ 126 (671)
.++|++. |++-. ..++...++++|--|+|=..+++||...+.... ..-+.++. +++..+ .+|++.+.
T Consensus 86 ~~~pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~---~~Ri~~i~ 160 (259)
T PF00290_consen 86 PDIPIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP---EERIKKIA 160 (259)
T ss_dssp TSSEEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS----HHHHHHHH
T ss_pred CCCCEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHH
Confidence 6789877 77632 245777677777669887788888765544211 11122333 233333 46777777
Q ss_pred HhCCCceEEEeeccCCC-------ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 127 AALPEIEYICLDVANGY-------TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 127 ~a~~~~d~Ivld~a~G~-------~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+... .++.+-...|. +..+.+.++++|+.. +..+++| .+.++++++.+. .|+|.++|++
T Consensus 161 ~~a~--gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 161 KQAS--GFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HH-S--SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HhCC--cEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 6633 34443333332 355677788877654 5567777 578999999988 9999999954
No 287
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.96 E-value=4.7 Score=42.24 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862 221 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG 276 (671)
Q Consensus 221 V~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~ 276 (671)
....+.+..++++|+|.+++..... ....+.++.+.++++|.
T Consensus 85 ~~~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~ 126 (263)
T cd07943 85 IGTVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGM 126 (263)
T ss_pred ccCHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCC
Confidence 3446888889999999998864222 12356777788877654
No 288
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=84.27 E-value=7.4 Score=39.87 Aligned_cols=111 Identities=24% Similarity=0.291 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCceE--EEeecc---CCCChHHHHHHHHHHHhCCCc-eEE---EEEecc---HHHHHHHHHCCCcEEEE
Q psy3862 120 AGLKEILAALPEIEY--ICLDVA---NGYTQTFVDFVRRIREMYPKH-VII---AGNVVT---GEMVEELILSGADVIKV 187 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~--Ivld~a---~G~~~~~~~~ik~lr~~~P~~-~li---~g~v~t---~e~a~~Li~AGaD~IvV 187 (671)
..+++.+.. +++- ++++.. .|+.....+.++.+++..... .++ .+.... ....+.+.++|||+|+.
T Consensus 74 ~E~~~Av~~--GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 74 YETKEAIKY--GADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HHHHHHHHc--CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 345555665 4444 444543 234455555566665543221 121 122111 24566788999999998
Q ss_pred CcCCCc-eEEEEecccCCcchh-hhhcc-ccC--CccccccHHHHHHHHHcCCCEE
Q psy3862 188 GIGPGS-VCTTRLKNKTSDFFL-IQFYS-CIP--QAGNVVTGEMVEELILSGADVI 238 (671)
Q Consensus 188 dga~G~-~~~t~v~~~~~~~~~-i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgv 238 (671)
.++-+. ..+ ..++.+ .+.+. .+| ++|||-|.+++++++++||+-+
T Consensus 152 sTGf~~~gat------~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 152 STGFGAGGAT------VEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCCCCCCCCC------HHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 764321 100 001111 11111 133 7999999999999999999943
No 289
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.23 E-value=3.8 Score=43.99 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
.++.+.+.+++ ++|.|-+|-. .++.+.+.++.+++.+|+..+.+....+.+.++...+.|||+|.+.
T Consensus 208 tl~ea~eal~~--gaDiI~LDnm--~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 208 SLEQLDEVLAE--GAELVLLDNF--PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred CHHHHHHHHHc--CCCEEEeCCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 34556666666 7888998833 4677777777666667877766665678999999999999999763
No 290
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.99 E-value=15 Score=38.18 Aligned_cols=120 Identities=21% Similarity=0.224 Sum_probs=70.3
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCceEEE-------EEe----------
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHVIIA-------GNV---------- 168 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~-------g~v---------- 168 (671)
|+.++-|+. ..+.++.++.. +++-+++.+..- .-.++++++.+.| |.. +++ +.+
T Consensus 75 ~v~vGGGIr--s~e~~~~~l~~--Ga~kvvigt~a~---~~p~~~~~~~~~~g~~~-ivvslD~~~~~~v~~~gw~~~~~ 146 (232)
T PRK13586 75 WIQVGGGIR--DIEKAKRLLSL--DVNALVFSTIVF---TNFNLFHDIVREIGSNR-VLVSIDYDNTKRVLIRGWKEKSM 146 (232)
T ss_pred CEEEeCCcC--CHHHHHHHHHC--CCCEEEECchhh---CCHHHHHHHHHHhCCCC-EEEEEEcCCCCEEEccCCeeCCC
Confidence 666655553 45666667776 777777764421 1124455544445 221 111 111
Q ss_pred ccHHHHHHHHHCCCcEE-EECc-CCCceEEEEecccCCcchhhhhcccc--C--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 169 VTGEMVEELILSGADVI-KVGI-GPGSVCTTRLKNKTSDFFLIQFYSCI--P--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 169 ~t~e~a~~Li~AGaD~I-vVdg-a~G~~~~t~v~~~~~~~~~i~~i~~~--p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
...+-+++|.+.|+.-| ..|. ..|+ ..-+++.+++.+... | ++|||.+.+-.+.+..+|++|+-||
T Consensus 147 ~~~e~~~~l~~~g~~~ii~tdI~~dGt-------~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 147 EVIDGIKKVNELELLGIIFTYISNEGT-------TKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred CHHHHHHHHHhcCCCEEEEeccccccc-------CcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 11377888888998554 4333 2221 112454444444221 2 7999999999999999999999999
No 291
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=83.99 E-value=18 Score=37.34 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=63.9
Q ss_pred HHHHHHHHHcC-CeEEeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC---
Q psy3862 70 FEMAKHLAKHG-LFTTIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY--- 143 (671)
Q Consensus 70 ~~lA~Ala~~g-glgvIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~--- 143 (671)
.+....++++| -+=++|.= .-+.+..+++++.. ...-+.++++++.+ .+..++....-+...+++..+|-
T Consensus 74 ~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G-~kaGv~lnP~Tp~~---~i~~~l~~vD~VllMsVnPGfgGQ~F 149 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELG-VKAGLVLNPATPLE---ALEPVLDDVDLVLLMSVNPGFGGQKF 149 (220)
T ss_pred HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcC-CeEEEEECCCCCHH---HHHHHHhhCCEEEEEeECCCCccccc
Confidence 56677788887 34457842 22333344444321 11113345556544 34444443112233455544432
Q ss_pred ChHHHHHHHHHHHhCCC---ceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 144 TQTFVDFVRRIREMYPK---HVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 144 ~~~~~~~ik~lr~~~P~---~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.....++++++|+..+. ..+.+=...+.+.++.+.+||||++|+++
T Consensus 150 i~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 150 IPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred CHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 35677788887765442 22323233578999999999999999854
No 292
>PRK06852 aldolase; Validated
Probab=83.95 E-value=2.8 Score=45.28 Aligned_cols=46 Identities=20% Similarity=0.009 Sum_probs=35.6
Q ss_pred HHHHHHcC------CCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 227 VEELILSG------ADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 227 a~~li~aG------AdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
+++++++| ||+|-+-+-+||- .+ .-|+.-+.++++.|+++|.++++
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~---~E-----~~ml~~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSE---YE-----SEMLSEAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCH---HH-----HHHHHHHHHHHHHHHHhCCcEEE
Confidence 66788888 8899999988852 11 45888889999999988776655
No 293
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=83.90 E-value=5.1 Score=43.10 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCcccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVVT 223 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~t 223 (671)
+.+.+++.|+..|... +.--+.+.++++.++++|+|+|-+|--.-. .+++ .++++. . +-++||| |
T Consensus 195 i~~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~s~e----~~~~------av~~~~~~~~ieaSGGI-~ 262 (296)
T PRK09016 195 IRQAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNFTTE----QMRE------AVKRTNGRALLEVSGNV-T 262 (296)
T ss_pred HHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCCChH----HHHH------HHHhhcCCeEEEEECCC-C
Confidence 4566777666666533 555667899999999999999988752211 0110 001111 1 1278888 8
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.+...+|+|.+-+|
T Consensus 263 ~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 263 LETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHHHHHhcCCCEEEeC
Confidence 899999999999999877
No 294
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=83.86 E-value=4.4 Score=41.52 Aligned_cols=98 Identities=23% Similarity=0.208 Sum_probs=59.5
Q ss_pred CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc--chh
Q psy3862 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD--FFL 208 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~--~~~ 208 (671)
+.|.+++-.. . . .+...++.++...+++..+.+.+.++.+.+.|+|+|.+ |++--|..|+..+. +..
T Consensus 81 ~AdGVHlGq~--D-~----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~----GpifpT~tK~~~~~~G~~~ 149 (211)
T COG0352 81 GADGVHLGQD--D-M----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGL----GPIFPTSTKPDAPPLGLEG 149 (211)
T ss_pred CCCEEEcCCc--c-c----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEE----CCcCCCCCCCCCCccCHHH
Confidence 6677776422 1 1 12223344555567777888999999999999999976 33311112211111 111
Q ss_pred hhhc---cccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862 209 IQFY---SCIP--QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 209 i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
+..+ ..+| +-||+ +.+.+..++++|||||=|
T Consensus 150 l~~~~~~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 150 LREIRELVNIPVVAIGGI-NLENVPEVLEAGADGVAV 185 (211)
T ss_pred HHHHHHhCCCCEEEEcCC-CHHHHHHHHHhCCCeEEe
Confidence 1111 2367 57787 788999999999998833
No 295
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=83.77 E-value=9 Score=41.80 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=91.2
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
+.+.+|-++ +.+.+=+... ...-.+.++.+++..| .++++--..+...|...+++|+|.|.+
T Consensus 38 ~QI~~L~~a--GceiVRvavp---~~~~A~al~~I~~~~~-iPlVADIHFd~~lAl~a~~~g~dkiRI------------ 99 (346)
T TIGR00612 38 AQIRALEEA--GCDIVRVTVP---DRESAAAFEAIKEGTN-VPLVADIHFDYRLAALAMAKGVAKVRI------------ 99 (346)
T ss_pred HHHHHHHHc--CCCEEEEcCC---CHHHHHhHHHHHhCCC-CCEEEeeCCCcHHHHHHHHhccCeEEE------------
Confidence 455666666 6666544321 2455667777777665 455654446677888889999999966
Q ss_pred cccCCcchhhhhccccCCccccccHHHHHHHHHcCCC---EEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862 200 KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGAD---VIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG 276 (671)
Q Consensus 200 ~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAd---gvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~ 276 (671)
-=||+++.+..+.++++--+ .+|+|+..||.- -+..-=-|.|...|..|.|-.-
T Consensus 100 -----------------NPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~-~~~~~kyg~~t~eamveSAl~~----- 156 (346)
T TIGR00612 100 -----------------NPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLE-RRLLEKYGDATAEAMVQSALEE----- 156 (346)
T ss_pred -----------------CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-HHHHHHcCCCCHHHHHHHHHHH-----
Confidence 24888888887777764322 689999999985 3555555677777777766321
Q ss_pred cchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862 277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK 310 (671)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~ 310 (671)
+..-..++|+|+-|-=|-|++.
T Consensus 157 ------------v~~le~~~F~diviS~KsSdv~ 178 (346)
T TIGR00612 157 ------------AAILEKLGFRNVVLSMKASDVA 178 (346)
T ss_pred ------------HHHHHHCCCCcEEEEEEcCCHH
Confidence 1223468899998866665554
No 296
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=83.69 E-value=15 Score=36.37 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=65.5
Q ss_pred CceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCHH---HHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCC
Q psy3862 56 GVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLE---EWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131 (671)
Q Consensus 56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~E---eq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~ 131 (671)
++|++..-|..-.....+..+.++|.=.+ +|.-.+.+ +..+..++. ..++.+.. .++.+.+.+.+.... +
T Consensus 53 ~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~---g~~~~v~~-~~~~t~~e~~~~~~~--~ 126 (202)
T cd04726 53 DKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY---GKEVQVDL-IGVEDPEKRAKLLKL--G 126 (202)
T ss_pred CCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc---CCeEEEEE-eCCCCHHHHHHHHHC--C
Confidence 56776665533333345666777776665 67543332 233333322 11222210 122223333334454 5
Q ss_pred ceEEEeeccC--CC--ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 132 IEYICLDVAN--GY--TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 132 ~d~Ivld~a~--G~--~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
.+.+.+..+. +. .....+.++++++. ++..+++....+.+.+..+.++|||.+++.
T Consensus 127 ~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 127 VDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred CCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEe
Confidence 6776664221 00 13345666666543 344454444446899999999999999884
No 297
>PRK08005 epimerase; Validated
Probab=83.61 E-value=5.2 Score=40.94 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCe-EEeecCC--CHHHHHHhhhcCcccccceE--EecCCChhhHHHHHHHHHhCCCceEEEeeccCC--
Q psy3862 70 FEMAKHLAKHGLF-TTIHKYY--TLEEWKAFAVQNPDVIKHVA--VSSGISAKDLAGLKEILAALPEIEYICLDVANG-- 142 (671)
Q Consensus 70 ~~lA~Ala~~ggl-gvIh~n~--~~Eeq~~~i~~~p~~~~~~~--v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G-- 142 (671)
......++++|.= =++|.-. .+.+..+.+++.- ..++ ++++++.+ .+..++....-+.+.+++..++
T Consensus 71 ~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G---~k~GlAlnP~Tp~~---~i~~~l~~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIG---AKAGLALNPATPLL---PYRYLALQLDALMIMTSEPDGRGQ 144 (210)
T ss_pred HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcC---CcEEEEECCCCCHH---HHHHHHHhcCEEEEEEecCCCccc
Confidence 4455667777644 4588542 2333344444321 1233 34555444 3444444322233344444332
Q ss_pred -CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 143 -YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 143 -~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
......++++++|+..+...+.+=...+.+.+..+.+||||.+|+++
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 23566778888776555433322233578999999999999999853
No 298
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=83.61 E-value=0.97 Score=46.65 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=61.6
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE----EE----------Eec-----------ccC-Ccchhhhhcc--
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC----TT----------RLK-----------NKT-SDFFLIQFYS-- 213 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~----~t----------~v~-----------~~~-~~~~~i~~i~-- 213 (671)
+-+||+-...|.+++ +.-||--|.--|-.|+.- .+ ++. +++ .+..++..+.
T Consensus 126 PFVcGarnLgEAlRR-I~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~ 204 (296)
T COG0214 126 PFVCGARNLGEALRR-ISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL 204 (296)
T ss_pred ceecCcCcHHHHHHH-HhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh
Confidence 467776555566654 566788888888777630 11 111 111 2344444443
Q ss_pred -ccC----CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHH
Q psy3862 214 -CIP----QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECA 268 (671)
Q Consensus 214 -~~p----~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~ 268 (671)
.+| +||||+|...+.-++++|||||-||-| +--.+.| ...||.++.
T Consensus 205 grLPVvnFAAGGvATPADAALMM~LGadGVFVGSG---------IFKS~~P~~~A~AIV~A~ 257 (296)
T COG0214 205 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSG---------IFKSSNPEKRAKAIVEAT 257 (296)
T ss_pred CCCCeEeecccCcCChhHHHHHHHhCCCeEEeccc---------ccCCCCHHHHHHHHHHHH
Confidence 356 799999999999999999999999943 2233455 355666654
No 299
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=83.55 E-value=3.4 Score=42.77 Aligned_cols=185 Identities=25% Similarity=0.279 Sum_probs=90.7
Q ss_pred CCccccceecccC-cchhhhHHHHHHHhhhcCCcchhhhhhccceeec-ccc--------CCCceeeeecCCCccCCCCc
Q psy3862 245 GSVCTTRLKTGVG-YPQFSAVLECADAAHGLGGHIISFLTAMAQKIIN-DIK--------LDFKDVMLRPKRSTLKSRSE 314 (671)
Q Consensus 245 ~~~~~Tr~V~gv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~--------l~fdDVll~P~rst~~sr~e 314 (671)
|-.-.+|..+|-| ||...-..|+.+++ |-.|+- +++|=.+ ... |.-++|.+.|+-+--.+-+|
T Consensus 12 g~~f~SRLllGTgky~s~~~~~~av~as---g~~ivT----vAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeE 84 (262)
T COG2022 12 GKTFDSRLLLGTGKYPSPAVLAEAVRAS---GSEIVT----VALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEE 84 (262)
T ss_pred CeeeeeeEEEecCCCCCHHHHHHHHHhc---CCceEE----EEEEeecccCCCcchHHHHhhhcCcEeCCCccccCCHHH
Confidence 3344689999988 77777777766655 333333 4555432 111 55667777777766555333
Q ss_pred ccceeeeeeccCCceeeCcceEecC----CCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeeccc
Q psy3862 315 VDITRTFTFRNSGKTYQGVPIIAAN----MDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCT 390 (671)
Q Consensus 315 Vdl~~~l~~~~s~~~~~~iPiIaa~----MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~ 390 (671)
-=.+-++...--+.-|.++-||+-. =|.+.+.+-|+.|.+.|-.-.-+-+.|+
T Consensus 85 Av~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~----------------------- 141 (262)
T COG2022 85 AVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDP----------------------- 141 (262)
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCH-----------------------
Confidence 3222222211112334445555432 1344444444444444322222222221
Q ss_pred ChhhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--CceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 391 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
--..+|.++|+-.++=-+.--|-..-..+.. ++..+++.. +-+|++|+=.+-+.+.+|+.|+|+|++-
T Consensus 142 --v~arrLee~GcaavMPl~aPIGSg~G~~n~~--------~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 142 --VLARRLEEAGCAAVMPLGAPIGSGLGLQNPY--------NLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred --HHHHHHHhcCceEeccccccccCCcCcCCHH--------HHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 1123445566655553322222211111110 011111111 1156999888888888999999999886
Q ss_pred c
Q psy3862 469 G 469 (671)
Q Consensus 469 ~ 469 (671)
.
T Consensus 212 T 212 (262)
T COG2022 212 T 212 (262)
T ss_pred h
Confidence 4
No 300
>PRK04302 triosephosphate isomerase; Provisional
Probab=83.50 E-value=5.8 Score=40.60 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=62.0
Q ss_pred HHHHHHhCCCceEEEeeccC--CCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEE
Q psy3862 122 LKEILAALPEIEYICLDVAN--GYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTT 197 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~--G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t 197 (671)
++.+.+. +++.+++..+. -......+.++..++ + ....+ --+.+.++++.+.+.|.|+|-+.. +.|+...
T Consensus 78 ~~~l~~~--G~~~vii~~ser~~~~~e~~~~v~~a~~-~-Gl~~I-~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~- 151 (223)
T PRK04302 78 PEAVKDA--GAVGTLINHSERRLTLADIEAVVERAKK-L-GLESV-VCVNNPETSAAAAALGPDYVAVEPPELIGTGIP- 151 (223)
T ss_pred HHHHHHc--CCCEEEEeccccccCHHHHHHHHHHHHH-C-CCeEE-EEcCCHHHHHHHhcCCCCEEEEeCccccccCCC-
Confidence 3444444 77777765320 011223333443333 2 12222 234567888888899999997643 2332110
Q ss_pred EecccCCc--chhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKTSD--FFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~~~--~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+....|. ...++.+. .+| .+|||.+.+.+..++++||||+-||
T Consensus 152 -~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 152 -VSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred -CCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 0000000 00111121 245 6999999999999999999999998
No 301
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=83.37 E-value=53 Score=33.74 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHH---HhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIR---EMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr---~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~ 195 (671)
.+.+.+.+.. +++.+.+-.-+.......+..++++ +.|- ..++. -++.+.+++.|+|-|=+.... ..
T Consensus 24 ~~~ve~al~~--Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~-v~liI-----Nd~~dlA~~~~AdGVHlGq~D--~~ 93 (211)
T COG0352 24 LEWVEAALKG--GVTAVQLREKDLSDEEYLALAEKLRALCQKYG-VPLII-----NDRVDLALAVGADGVHLGQDD--MP 93 (211)
T ss_pred HHHHHHHHhC--CCeEEEEecCCCChHHHHHHHHHHHHHHHHhC-CeEEe-----cCcHHHHHhCCCCEEEcCCcc--cc
Confidence 4666677776 7777766544433344344444443 4452 22222 245666679999999442110 00
Q ss_pred EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHH
Q psy3862 196 TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLE 266 (671)
Q Consensus 196 ~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~ 266 (671)
.....+..++ ...++-.+-+.+.++.+.+.|||-| |+ |.+=-|.-..+- .|+....++
T Consensus 94 ~~~ar~~~~~--------~~iIG~S~h~~eea~~A~~~g~DYv--~~--GpifpT~tK~~~-~~~G~~~l~ 151 (211)
T COG0352 94 LAEARELLGP--------GLIIGLSTHDLEEALEAEELGADYV--GL--GPIFPTSTKPDA-PPLGLEGLR 151 (211)
T ss_pred hHHHHHhcCC--------CCEEEeecCCHHHHHHHHhcCCCEE--EE--CCcCCCCCCCCC-CccCHHHHH
Confidence 0001111110 1125667779999999999999976 33 345455555555 666555554
No 302
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=83.36 E-value=14 Score=40.23 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHcCCcEEEEccc---cccccccccccccccccccccccccccccC--ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 398 AMGAGADFVMLGGM---FAGHDQSGGELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 398 l~~aG~d~i~id~~---a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+.++|+|.|.+.+. ..|++...--.+ ....+..+..+++... .++.-|-+.+.+-++.+..|||+||+|.
T Consensus 160 l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~--~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmIGR 234 (333)
T PRK11815 160 VAEAGCDTFIVHARKAWLKGLSPKENREI--PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGR 234 (333)
T ss_pred HHHhCCCEEEEcCCchhhcCCCccccccC--CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEEcH
Confidence 35789999998642 234431110000 0001122222333221 2444444667776665545899999996
No 303
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.30 E-value=14 Score=41.64 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--Eecc-HHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862 121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG--NVVT-GEMVEELILSGADVIKVGIGPGSVCTT 197 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g--~v~t-~e~a~~Li~AGaD~IvVdga~G~~~~t 197 (671)
+++...++ +++.+++.... ......+.++..++.. ..++.+ +..+ .++++.+.+.|+|+|.+. +|.. +
T Consensus 73 ~v~~a~~a--GAdgV~v~g~~-~~~~~~~~i~~a~~~G--~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~--pg~~--~ 143 (430)
T PRK07028 73 EVEMAAKA--GADIVCILGLA-DDSTIEDAVRAARKYG--VRLMADLINVPDPVKRAVELEELGVDYINVH--VGID--Q 143 (430)
T ss_pred HHHHHHHc--CCCEEEEecCC-ChHHHHHHHHHHHHcC--CEEEEEecCCCCHHHHHHHHHhcCCCEEEEE--eccc--h
Confidence 55556666 77887753211 1122334455544422 223333 3334 577888899999999764 3321 0
Q ss_pred EecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 198 RLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 198 ~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.... ...+..+..+. .+| +.||| +.+.+..++++|||++-+|
T Consensus 144 ~~~~-~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vG 190 (430)
T PRK07028 144 QMLG-KDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVG 190 (430)
T ss_pred hhcC-CChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 0000 00111122221 255 68999 6788999999999999877
No 304
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=83.25 E-value=5.6 Score=40.97 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
-.+.++++.+..+...-++|.+.+.++++.++++|||-+++.+
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 4467777777766445677788999999999999999999977
No 305
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.13 E-value=3 Score=40.19 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.0
Q ss_pred eeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 444 VDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 444 i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
+.|||+.+.+..++.+.|+|.| .+||
T Consensus 98 ~~GGvip~~d~~~l~~~G~~~i----f~pg 123 (143)
T COG2185 98 VVGGVIPPGDYQELKEMGVDRI----FGPG 123 (143)
T ss_pred eecCccCchhHHHHHHhCccee----eCCC
Confidence 4899999999777889999988 5777
No 306
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.10 E-value=9.6 Score=41.41 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=36.3
Q ss_pred HHHcCCcEEEEcccc---ccccccc--------cccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEE
Q psy3862 398 AMGAGADFVMLGGMF---AGHDQSG--------GELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVM 466 (671)
Q Consensus 398 l~~aG~d~i~id~~a---~gh~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~ 466 (671)
+.++|+|.|.|.+-. +|++... .+.+..++..+|.+ .+|.-|.|.+.+-+..+..|||+||
T Consensus 150 l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~i--------pVi~NGdI~s~~da~~~l~g~dgVM 221 (318)
T TIGR00742 150 VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHL--------TIEINGGIKNSEQIKQHLSHVDGVM 221 (318)
T ss_pred HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCC--------cEEEECCcCCHHHHHHHHhCCCEEE
Confidence 357899999988642 4554321 11122222222111 1444455677777665446999999
Q ss_pred ECc
Q psy3862 467 LGG 469 (671)
Q Consensus 467 vG~ 469 (671)
+|.
T Consensus 222 igR 224 (318)
T TIGR00742 222 VGR 224 (318)
T ss_pred ECH
Confidence 996
No 307
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.99 E-value=8 Score=39.89 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=54.8
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-cc---CC-ccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CI---PQ-AGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~---p~-aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|.+.+....-..... ......+..+. .. +. +-.-...+.++.+.++|++.+++-+. +|
T Consensus 23 ~i~~~L~~~GV~~IEvg~~~~~~~~p~~---~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~-~s 98 (265)
T cd03174 23 EIAEALDEAGVDSIEVGSGASPKAVPQM---EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDS-AS 98 (265)
T ss_pred HHHHHHHHcCCCEEEeccCcCccccccC---CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEe-cC
Confidence 5577888999999988664322000000 00111111111 11 11 11111188899999999999999974 33
Q ss_pred ccccceecccCcc-hhhhHHHHHHHhhhcCCc
Q psy3862 247 VCTTRLKTGVGYP-QFSAVLECADAAHGLGGH 277 (671)
Q Consensus 247 ~~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~ 277 (671)
-.--+...+.+.+ .+..+.++.+.++++|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 130 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLE 130 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 2111222233332 467778888888876643
No 308
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.55 E-value=3.5 Score=45.53 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|-+.. +.++. ++.+.+..++. ...+..-...+.++.++++|++.|++-+...-
T Consensus 26 ~ia~~L~~~Gv~~IEvG~-p~~~~~~~e~i~~i~~~~~~~--------~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd 96 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGF-PIASEGEFEAIKKISQEGLNA--------EICSLARALKKDIDKAIDCGVDSIHTFIATSP 96 (363)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCChHHHHHHHHHHhcCCCc--------EEEEEcccCHHHHHHHHHcCcCEEEEEEcCCH
Confidence 567788899999998743 22110 00111100000 01344456788999999999999988764333
Q ss_pred ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862 247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG 275 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~ 275 (671)
... +...+....+ +..+.++.+.|+++|
T Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~i~~ak~~G 125 (363)
T TIGR02090 97 IHL-KYKLKKSRDEVLEKAVEAVEYAKEHG 125 (363)
T ss_pred HHH-HHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 221 1123333332 456778888887665
No 309
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=82.32 E-value=25 Score=36.38 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCe-EEeecCC--CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCC---C
Q psy3862 70 FEMAKHLAKHGLF-TTIHKYY--TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANG---Y 143 (671)
Q Consensus 70 ~~lA~Ala~~ggl-gvIh~n~--~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G---~ 143 (671)
......++++|.= =++|.-. .+.+..+++++.. ...-+.++++++.+ .+..++....-+.+.+++..++ .
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g-~k~GlalnP~T~~~---~i~~~l~~vD~VlvMtV~PGf~GQ~f 150 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHG-CQAGLVLNPATPVD---ILDWVLPELDLVLVMSVNPGFGGQAF 150 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCC-CceeEEeCCCCCHH---HHHHHHhhcCEEEEEEECCCCCCccc
Confidence 4455667777644 4588532 2333344454431 11112234445443 4444444322233345554332 2
Q ss_pred ChHHHHHHHHHHHh----CCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 144 TQTFVDFVRRIREM----YPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 144 ~~~~~~~ik~lr~~----~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.....+.++++++. .+...+.+-...+.+.++.+.++|||++|+++
T Consensus 151 i~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 151 IPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 35556667666543 22322333333578999999999999999853
No 310
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.26 E-value=5.6 Score=42.51 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccc
Q psy3862 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG 420 (671)
Q Consensus 343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~ 420 (671)
|-+.+-|.+..+.|.=.++=-|+|+|+..+.+...+... .+-++|+++++.+....+.|+|+|.+. +--||-..+
T Consensus 201 v~tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~~~~~-~leaSGGI~~~ni~~yA~tGVD~Is~G--althsa~~~ 275 (281)
T PRK06106 201 VDTLDQLEEALELGVDAVLLDNMTPDTLREAVAIVAGRA-ITEASGRITPETAPAIAASGVDLISVG--WLTHSAPVL 275 (281)
T ss_pred eCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHhCCCc-eEEEECCCCHHHHHHHHhcCCCEEEeC--hhhcCCCcc
Confidence 346788899999999888899999999999988665433 378899999999999999999999985 344443333
No 311
>PRK15452 putative protease; Provisional
Probab=82.24 E-value=3.7 Score=46.65 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeecc--------
Q psy3862 221 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIIND-------- 292 (671)
Q Consensus 221 V~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------- 292 (671)
+.+.+++++++++|||+|.+|...=+ .|.-.. .-...-+.++.+.||++|++|...+..+-. +++
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~---~R~~~~--~f~~edl~eav~~ah~~g~kvyvt~n~i~~--e~el~~~~~~l 82 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYS---LRVRNN--EFNHENLALGINEAHALGKKFYVVVNIAPH--NAKLKTFIRDL 82 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccc---hhhhcc--CCCHHHHHHHHHHHHHcCCEEEEEecCcCC--HHHHHHHHHHH
Confidence 45679999999999999999954322 221110 011234777888889988876542211100 111
Q ss_pred ---ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeE-EEccCCCHH
Q psy3862 293 ---IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFT-TIHKYYTLE 368 (671)
Q Consensus 293 ---~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglg-vihr~~~~e 368 (671)
..+..|-|++. ....+.+-+ ....++||.+|--=.|++...+..+.++|.-. ++.+-.+++
T Consensus 83 ~~l~~~gvDgvIV~-------d~G~l~~~k--------e~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~ 147 (443)
T PRK15452 83 EPVIAMKPDALIMS-------DPGLIMMVR--------EHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLE 147 (443)
T ss_pred HHHHhCCCCEEEEc-------CHHHHHHHH--------HhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHH
Confidence 12233333332 111111111 12236899998888899999999999998754 566999999
Q ss_pred HHHHHHhcCcc
Q psy3862 369 EWKAFAVQNPD 379 (671)
Q Consensus 369 ~~~~~v~~~~~ 379 (671)
|..+...+.++
T Consensus 148 EI~~i~~~~~~ 158 (443)
T PRK15452 148 EIEEIRQQCPD 158 (443)
T ss_pred HHHHHHhhCCC
Confidence 99887655543
No 312
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=82.21 E-value=15 Score=37.90 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=88.1
Q ss_pred ceEEecCCCccc-cHHHHHHHHHcCCeEEeecC-CCH----HHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhC
Q psy3862 57 VPIIAANMDTVG-TFEMAKHLAKHGLFTTIHKY-YTL----EEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAAL 129 (671)
Q Consensus 57 ~Piv~a~M~~vt-~~~lA~Ala~~gglgvIh~n-~~~----Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~ 129 (671)
.|+ .++..+.. ..++|..+... |.--+|-- .+. +.+...+++.. .+.-|+.++-|+ +..+.+.+++..
T Consensus 25 ~p~-~~~~~~~~dp~~~a~~~~~~-g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGi--r~~edv~~~l~~- 99 (233)
T cd04723 25 RPI-TSNLCSTSDPLDVARAYKEL-GFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGI--RSLENAQEWLKR- 99 (233)
T ss_pred ccc-ccCcccCCCHHHHHHHHHHC-CCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCc--CCHHHHHHHHHc-
Confidence 455 34444333 46788888877 44334421 110 11111121111 111245554444 456777777776
Q ss_pred CCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE------Ee------c-cHHHHHHHHHCCCcE-EEECc-CCCce
Q psy3862 130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG------NV------V-TGEMVEELILSGADV-IKVGI-GPGSV 194 (671)
Q Consensus 130 ~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g------~v------~-t~e~a~~Li~AGaD~-IvVdg-a~G~~ 194 (671)
+++-+++.+.- ..+ ++++++-+.||.-.++++ .+ . -.+.++.+.+. ++- ++.|. .-|+
T Consensus 100 -Ga~~viigt~~--~~~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~- 172 (233)
T cd04723 100 -GASRVIVGTET--LPS--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS- 172 (233)
T ss_pred -CCCeEEEccee--ccc--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc-
Confidence 66666666442 122 555555555654122221 11 0 23556777777 874 44444 1121
Q ss_pred EEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 195 CTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 195 ~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..-+++.++.-+. .+| ++|||.+.+.++.++.+||+++-||
T Consensus 173 ------~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 173 ------GQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred ------CCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 1123444433332 346 7999999999999999999999998
No 313
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.17 E-value=6.5 Score=42.28 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCcccccc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVVT 223 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~t 223 (671)
..+.++.+++..|. .+|---+.|.++++.++++|||+|-+|--.-. .+++ .++.+. . +-++||| |
T Consensus 192 i~~av~~~r~~~~~-~kIeVEvetleea~eA~~aGaDiImLDnmspe----~l~~------av~~~~~~~~lEaSGGI-t 259 (294)
T PRK06978 192 VGAALDAAFALNAG-VPVQIEVETLAQLETALAHGAQSVLLDNFTLD----MMRE------AVRVTAGRAVLEVSGGV-N 259 (294)
T ss_pred HHHHHHHHHHhCCC-CcEEEEcCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHhhcCCeEEEEECCC-C
Confidence 34555655554443 34555667899999999999999988742210 0110 001111 1 1278888 8
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy3862 224 GEMVEELILSGADVIKVG 241 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG 241 (671)
.+.+.+....|+|.+-+|
T Consensus 260 ~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 260 FDTVRAFAETGVDRISIG 277 (294)
T ss_pred HHHHHHHHhcCCCEEEeC
Confidence 899999999999999877
No 314
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=81.88 E-value=6.6 Score=40.80 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=36.7
Q ss_pred CceEEEeeccCCCChHHHHHHHHHHHhCCCceE-EEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVI-IAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~l-i~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
+..++.++-.-|-..+..+.+.+.++...+..+ ++|.+.+.|+|+.+.++|||.||++
T Consensus 153 g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 153 GMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVG 211 (230)
T ss_dssp T-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEES
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 557888886334444454444455554555555 5568899999999999999999884
No 315
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.74 E-value=9.2 Score=39.48 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=25.1
Q ss_pred cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 215 IP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+| ++|||.+.+-.+.+..+|++|+-+|
T Consensus 183 ~pviasGGv~~~~Dl~~l~~~g~~gvivg 211 (228)
T PRK04128 183 EEFIYAGGVSSAEDVKKLAEIGFSGVIIG 211 (228)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEE
Confidence 45 7999999999999999999999998
No 316
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=81.32 E-value=15 Score=40.13 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=53.8
Q ss_pred eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862 168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvk 239 (671)
..+...+++|.+.|+-+|---+ +.|.. +. +-+.+..+ . .+| +.+||.+++.++.++++|||||-
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIGsg~g----v~----~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIGSGLG----IQ----NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeeccccccCCCC----CC----CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4678999999999995553311 22211 11 11112222 1 244 79999999999999999999998
Q ss_pred EcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862 240 VGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA 271 (671)
Q Consensus 240 VG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~ 271 (671)
+- |-++ -...| ++.|...+.+|-
T Consensus 277 ~n--------SaIa-~a~dPv~Ma~A~~~av~aG 301 (326)
T PRK11840 277 MN--------TAIA-EAKNPVLMARAMKLAVEAG 301 (326)
T ss_pred Ec--------ceec-cCCCHHHHHHHHHHHHHHH
Confidence 76 4443 44555 445555554443
No 317
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.16 E-value=13 Score=38.68 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
-.+.++++.+.. ...-++|.+.+.+.++.++++|||-+++.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT 103 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence 345566664443 224566778888888888899998888876
No 318
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=81.13 E-value=35 Score=36.04 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhh----hhcc-ccC----CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLI----QFYS-CIP----QAGNVVTGEMVEELILSGADVIKVGI 242 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i----~~i~-~~p----~aGnV~t~~~a~~li~aGAdgvkVG~ 242 (671)
+-++.|.++|+|.|-+.-..++.........+.+...+ +..+ ..+ .-.+..+-+-...+.+.|.|.||+.+
T Consensus 24 ~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~ 103 (266)
T cd07944 24 AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF 103 (266)
T ss_pred HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec
Confidence 56788999999999987422211000000001111000 1110 111 12233456778888899999999985
Q ss_pred cCCCccccceecccCcchhhhHHHHHHHhhhcC
Q psy3862 243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG 275 (671)
Q Consensus 243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~ 275 (671)
.. -.+..+.++.+.++++|
T Consensus 104 ~~--------------~~~~~~~~~i~~ak~~G 122 (266)
T cd07944 104 HK--------------HEFDEALPLIKAIKEKG 122 (266)
T ss_pred cc--------------ccHHHHHHHHHHHHHCC
Confidence 22 14677777788887655
No 319
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.03 E-value=7 Score=41.80 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
|-+.+-|.+..+.|.=.++=-|+|||+..+.+...++.. .+-++|+++.+.+++..+.|+|+|.+. +--||...+++
T Consensus 200 v~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~~~~-~leaSGgI~~~ni~~yA~tGVD~Is~g--alths~~~~D~ 276 (281)
T PRK06543 200 VDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVDGRA-IVEASGNVNLNTVGAIASTGVDVISVG--ALTHSVRALDL 276 (281)
T ss_pred eCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhCCCe-EEEEECCCCHHHHHHHHhcCCCEEEeC--ccccCCcccce
Confidence 457888999999999888889999999999987655422 578899999999999999999999985 45565544443
No 320
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=80.96 E-value=15 Score=41.94 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCcEEEECcCCC-ceEEEEecccCCcchhhhhcc-ccC--------Ccccccc---------HHHHHHHHH
Q psy3862 172 EMVEELILSGADVIKVGIGPG-SVCTTRLKNKTSDFFLIQFYS-CIP--------QAGNVVT---------GEMVEELIL 232 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G-~~~~t~v~~~~~~~~~i~~i~-~~p--------~aGnV~t---------~~~a~~li~ 232 (671)
+-++.|.++|++.|-+.++.+ ..|...+++. +...+..+. .+| -+-|+.. .+-.+.+++
T Consensus 30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~--p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~ 107 (448)
T PRK12331 30 PILEKLDNAGYHSLEMWGGATFDACLRFLNED--PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVE 107 (448)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhccCCCC--HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHH
Confidence 567788899999998854322 1232222211 111111111 111 1223322 245577889
Q ss_pred cCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862 233 SGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277 (671)
Q Consensus 233 aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~ 277 (671)
+|+|.+++.....-+ .-+.++.++|++.|.+
T Consensus 108 ~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~ 138 (448)
T PRK12331 108 NGIDIIRIFDALNDV--------------RNLETAVKATKKAGGH 138 (448)
T ss_pred CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCe
Confidence 999999998654332 1366677888877654
No 321
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=80.63 E-value=15 Score=38.75 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred cceEecCCCCCCCHHHHHHHHHcCCeEE--EccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcc
Q psy3862 333 VPIIAANMDTVGTFEMAKHLAKHGLFTT--IHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGG 410 (671)
Q Consensus 333 iPiIaa~MDtV~~~~mA~~la~~Gglgv--ihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~ 410 (671)
+|++. =|.+.++-.-.+=..+|.=++ |-...+.++..+++....++ ---.-.=+-+++|+++.+++|+++|.|.
T Consensus 110 ~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~l-Gle~lVEVh~~~El~~al~~~a~iiGIN- 185 (254)
T PF00218_consen 110 LPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSL-GLEALVEVHNEEELERALEAGADIIGIN- 185 (254)
T ss_dssp S-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTT-SEEEEE-
T ss_pred CCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHc-CCCeEEEECCHHHHHHHHHcCCCEEEEe-
Confidence 56655 466666665555455554443 44777777766665432111 0000011225688999999999999987
Q ss_pred ccccccccccccccccccccccccccccccCc----eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 411 MFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG----VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 411 ~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.-+=|+. ..++ +... .+..++++ +-..|+-...++..+..+|+|+|.||-
T Consensus 186 nRdL~tf-~vd~-~~~~-------~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe 239 (254)
T PF00218_consen 186 NRDLKTF-EVDL-NRTE-------ELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGE 239 (254)
T ss_dssp SBCTTTC-CBHT-HHHH-------HHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESH
T ss_pred CccccCc-ccCh-HHHH-------HHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECH
Confidence 1111111 0110 0011 11222222 445675444444445699999999994
No 322
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.54 E-value=5.3 Score=41.82 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 226 ~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
.++.++++|||+|.+-.-.|+- +. +-++.-+.++.++|+++|+++|.
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~-~~-------~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSD-TE-------WEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCc-hH-------HHHHHHHHHHHHHHHHcCCCEEE
Confidence 4788999999999998877751 11 23556667777778776655443
No 323
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=80.50 E-value=12 Score=40.73 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=22.8
Q ss_pred eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 443 VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
++++|+-.+.|++++|+.|||+|.+-.
T Consensus 253 ivdAGIg~~sda~~AmelGadgVL~nS 279 (326)
T PRK11840 253 LVDAGVGTASDAAVAMELGCDGVLMNT 279 (326)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 348998778888889999999998874
No 324
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=80.09 E-value=6.6 Score=41.90 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
..+++.+.+++ ++|.|.+|. ..++.+.+.++.+++..|...+.+....+.+.++...+.|+|+|++.
T Consensus 197 tleea~ea~~~--GaDiI~lDn--~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQA--SPDILQLDK--FTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHc--CcCEEEECC--CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 45677777777 788898883 34677777777766556766666555578999999999999999763
No 325
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=79.67 E-value=5.8 Score=42.17 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 117 KDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 117 ~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
+..+.+.+..+. ++|.+-+|.. .+..+.+.++.+++.+|...+++-...+.+.+..+.++|||.|++
T Consensus 191 ~t~eea~~A~~~--gaD~I~ld~~--~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 191 DSLEEALAAAEA--GADILQLDKF--SPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred CCHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEE
Confidence 344555555555 7788888743 455666666655555666666665556899999999999999955
No 326
>KOG3111|consensus
Probab=79.66 E-value=2.4 Score=42.73 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=42.7
Q ss_pred hhHHHHHHcCCcEEEEcccccccc-----ccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862 393 GDVAKAMGAGADFVMLGGMFAGHD-----QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467 (671)
Q Consensus 393 ~~~~~l~~aG~d~i~id~~a~gh~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v 467 (671)
++++++++ -+|+..|=.+-.|.. ++.+.-++.++.+||.++ --++|| +.+.++-+..++||+.+..
T Consensus 126 e~~~~~~~-~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~-------ievDGG-v~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 126 EDLEPLAE-HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD-------IEVDGG-VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred HHHHHhhc-cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCce-------EEecCC-cCcchHHHHHHcCCCEEEe
Confidence 55555544 577777653334543 334444444555555553 026888 5778888889999999988
Q ss_pred Cc
Q psy3862 468 GG 469 (671)
Q Consensus 468 G~ 469 (671)
|.
T Consensus 197 Gs 198 (224)
T KOG3111|consen 197 GS 198 (224)
T ss_pred cc
Confidence 74
No 327
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=79.64 E-value=8.2 Score=42.60 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC----CccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP----QAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p----~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|-+... ..+-. ++..+..+. ..| .+-.-...+.+..++++|++.|++-+.. |
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p-~~~~~--------~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~-S 96 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIP-AMGEE--------ERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPV-S 96 (365)
T ss_pred HHHHHHHHcCCCEEEEeCC-CCCHH--------HHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEcc-C
Confidence 5567788889998877421 11100 001111111 111 2333457888999999999999998732 2
Q ss_pred ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862 247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG 275 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~ 275 (671)
-.--+.+.+..+.+ +.-+.++.+.|+++|
T Consensus 97 d~~~~~~~~~s~~e~l~~~~~~i~~ak~~g 126 (365)
T TIGR02660 97 DLQIEAKLRKDRAWVLERLARLVSFARDRG 126 (365)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHhCC
Confidence 22222333444444 344567777777654
No 328
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.62 E-value=7.2 Score=41.65 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC--CCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY--PKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~--P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
..+.+.+.+++ ++|.|-+|.. .++.+.+.++.+++.+ |...+.+....+.+.++...+.|||+|.+.
T Consensus 191 ~leea~~a~~a--gaDiI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 191 SLEDALKAAKA--GADIIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred CHHHHHHHHHc--CcCEEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 34566666676 7788888844 4566667777666544 555555554458999999999999999764
No 329
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=79.09 E-value=20 Score=33.96 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCeEEeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCC-CChH
Q psy3862 70 FEMAKHLAKHGLFTTIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANG-YTQT 146 (671)
Q Consensus 70 ~~lA~Ala~~gglgvIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G-~~~~ 146 (671)
.++...+-+.+|+-+++-+ .++|+-. +...+. +++++.+....+ +...
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~~s~e~~v---------------------------~aa~e~--~adii~iSsl~~~~~~~ 69 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLFQTPEEIA---------------------------RQAVEA--DVHVVGVSSLAGGHLTL 69 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHH---------------------------HHHHHc--CCCEEEEcCchhhhHHH
Confidence 5677778888888887744 3444322 223333 455666554443 3344
Q ss_pred HHHHHHHHHHhCC-CceEEEEEeccHHHHHHHHHCCCcEEE
Q psy3862 147 FVDFVRRIREMYP-KHVIIAGNVVTGEMVEELILSGADVIK 186 (671)
Q Consensus 147 ~~~~ik~lr~~~P-~~~li~g~v~t~e~a~~Li~AGaD~Iv 186 (671)
..+.++.+++..+ ...+++|.....+..+.|.++|+|.+.
T Consensus 70 ~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 70 VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 5555666666543 445555543345666779999999984
No 330
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=78.90 E-value=15 Score=39.93 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCEEEEcccCC
Q psy3862 224 GEMVEELILSGADVIKVGIGPG 245 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~ 245 (671)
.+.|+.+.++|.|||.+-.+-|
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~g 178 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHG 178 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccc
Confidence 4678888999999999987755
No 331
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=78.64 E-value=16 Score=39.69 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG 257 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~ 257 (671)
.+.++.+.+.|+|+|=+.+| |-...|..-|
T Consensus 80 ~~aa~~~~~~g~d~IdlN~g----CP~~~v~~~g 109 (321)
T PRK10415 80 ADAARINVESGAQIIDINMG----CPAKKVNRKL 109 (321)
T ss_pred HHHHHHHHHCCCCEEEEeCC----CCHHHHcCCC
Confidence 34555566799999999988 5554444444
No 332
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.63 E-value=9.5 Score=40.98 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
-+.+.|.+..+.|.=.++=-|+|||+..+.+...++- ..+-++|+++++.++...+.|+|+|.+. +--||...+++
T Consensus 205 ~tleea~~a~~agaDiImLDnmspe~l~~av~~~~~~-~~leaSGGI~~~ni~~yA~tGVD~Is~g--althsa~~~Di 280 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAGR-SRIECSGNIDMTTISRFRGLAIDYVSSG--SLTHSAKSLDF 280 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCc-eEEEEECCCCHHHHHHHHhcCCCEEEeC--ccccCCcccce
Confidence 5679999999999988888999999999998765542 2577899999999999999999999985 45555444443
No 333
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=78.36 E-value=8.5 Score=40.46 Aligned_cols=193 Identities=18% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCce----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcC----CCEEEEccc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSG----ADVIKVGIG 243 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aG----AdgvkVG~~ 243 (671)
+-++.|.++|+|.|.+....-+. ....+.+..++..+ .+---...+.+..++++| +|.+++-+
T Consensus 24 ~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~--------~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~- 94 (268)
T cd07940 24 EIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEI--------CGLARAVKKDIDAAAEALKPAKVDRIHTFI- 94 (268)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEE--------EEEccCCHhhHHHHHHhCCCCCCCEEEEEe-
Q ss_pred CCCccccceecccCcch-hhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeee
Q psy3862 244 PGSVCTTRLKTGVGYPQ-FSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFT 322 (671)
Q Consensus 244 ~~~~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~ 322 (671)
|-|-=--+...+....+ +..+.++.+.|+++|.
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---------------------------------------------- 128 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL---------------------------------------------- 128 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC----------------------------------------------
Q ss_pred eccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcC
Q psy3862 323 FRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAG 402 (671)
Q Consensus 323 ~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG 402 (671)
...++.|-.+ -.++|.+.+.+ +++.++|
T Consensus 129 -----~v~~~~~~~~--------------------------~~~~~~~~~~~---------------------~~~~~~G 156 (268)
T cd07940 129 -----DVEFSAEDAT--------------------------RTDLDFLIEVV---------------------EAAIEAG 156 (268)
T ss_pred -----eEEEeeecCC--------------------------CCCHHHHHHHH---------------------HHHHHcC
Q ss_pred CcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 403 ADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 403 ~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
+|-|++-++. ..+-..+.++++.++..+|..+.--+|..|- +=| ....+.-.++++||+.|=..+.|=|
T Consensus 157 ~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn-~~G-lA~An~laAi~aG~~~iD~s~~GlG 226 (268)
T cd07940 157 ATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHN-DLG-LAVANSLAAVEAGARQVECTINGIG 226 (268)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC-Ccc-hHHHHHHHHHHhCCCEEEEEeeccc
No 334
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=78.33 E-value=26 Score=38.97 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccC-Cc---chhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKT-SD---FFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~-~~---~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
+.++.|.++|+|+|.+.++.-..........+ +. .+....++ .+| ..|++-|.+.+.++++.| ||.|-+|
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 45678888999999885432111110111001 11 12222232 256 799999999999999876 9999666
No 335
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=77.87 E-value=32 Score=34.08 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCeEE-eecCCCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccC-C-----C
Q psy3862 71 EMAKHLAKHGLFTT-IHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVAN-G-----Y 143 (671)
Q Consensus 71 ~lA~Ala~~gglgv-Ih~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~-G-----~ 143 (671)
+....+.+.|-=|+ +|...+ ++..++++........+++.... ....++++++.. ..+.+.+...+ | .
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~---~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELGMKAGVALNP-GTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred HHHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCCCeEEEEecC-CCCHHHHHHHHh---hCCEEEEEEECCCCCCccc
Confidence 34544556665576 887644 23222222110000112222211 112445555433 24565444322 2 1
Q ss_pred ChHHHHHHHHHHHhC----CCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 144 TQTFVDFVRRIREMY----PKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 144 ~~~~~~~ik~lr~~~----P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.....+.++++++.. |+..++++...+.+.++.+.++|+|.+++.+
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgs 195 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGS 195 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence 234455666665432 2344544334556999999999999998853
No 336
>KOG1606|consensus
Probab=77.85 E-value=2 Score=43.68 Aligned_cols=81 Identities=27% Similarity=0.351 Sum_probs=52.7
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE----EEE----------eccc------------CCcchhhhhcc--
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC----TTR----------LKNK------------TSDFFLIQFYS-- 213 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~----~t~----------v~~~------------~~~~~~i~~i~-- 213 (671)
+-+||.-.+.|..++ +.-|+--|...|--|+.- .+. +++. ..+.+++...+
T Consensus 127 PFvCG~rdlGEALRR-I~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~ 205 (296)
T KOG1606|consen 127 PFVCGCRDLGEALRR-IREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL 205 (296)
T ss_pred ceeeccccHHHHHHH-HhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc
Confidence 467877666666665 567899999988556531 111 1110 01223332222
Q ss_pred -ccC----CccccccHHHHHHHHHcCCCEEEEccc
Q psy3862 214 -CIP----QAGNVVTGEMVEELILSGADVIKVGIG 243 (671)
Q Consensus 214 -~~p----~aGnV~t~~~a~~li~aGAdgvkVG~~ 243 (671)
.+| ++|||+|...+.-++++|+|||-||-|
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSg 240 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSG 240 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccc
Confidence 256 799999999999999999999999933
No 337
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=77.77 E-value=13 Score=39.64 Aligned_cols=127 Identities=24% Similarity=0.254 Sum_probs=78.6
Q ss_pred CcceEecCCCCCCCHHHHHHHHHcCCeEEEc---cCCCHHHHHHHHhcCcccc-----------ccee---------eec
Q psy3862 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIH---KYYTLEEWKAFAVQNPDVI-----------KHVA---------DGG 388 (671)
Q Consensus 332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvih---r~~~~e~~~~~v~~~~~~~-----------~~v~---------~~~ 388 (671)
++|| +=..|-..+++.+...-+ +|++.+. ++.+.+++.+..+++.++. -++. ...
T Consensus 74 ~vpv-~lHlDH~~~~e~i~~Al~-~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s 151 (281)
T PRK06806 74 KVPV-AVHFDHGMTFEKIKEALE-IGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEML 151 (281)
T ss_pred CCCE-EEECCCCCCHHHHHHHHH-cCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccce
Confidence 5784 468899889997776554 5666666 7899999998887753321 1222 111
Q ss_pred ccChhhHHHHHH-cCCcEEEE--cccccccccccccccccccccccccccccccc--Cceeec--cccCchhHHHHHHcC
Q psy3862 389 CTSPGDVAKAMG-AGADFVML--GGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDG--GCTSPGDVAKAMGAG 461 (671)
Q Consensus 389 ~~~~~~~~~l~~-aG~d~i~i--d~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~g--G~v~t~~~a~~l~aG 461 (671)
.+++++..+.++ .|+|+|-+ . +.||-.. . ....-+..|..+++.. +=+..| | +...++.+++.+|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG-~~hg~~~--~----~~~l~~~~L~~i~~~~~iPlV~hG~SG-I~~e~~~~~i~~G 223 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIG-NAHGMYN--G----DPNLRFDRLQEINDVVHIPLVLHGGSG-ISPEDFKKCIQHG 223 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccC-CCCCCCC--C----CCccCHHHHHHHHHhcCCCEEEECCCC-CCHHHHHHHHHcC
Confidence 246788877764 59999998 4 6666321 1 1112222233333332 225678 6 3566667788999
Q ss_pred CcEEEEC
Q psy3862 462 ADFVMLG 468 (671)
Q Consensus 462 Ad~V~vG 468 (671)
++.|=|.
T Consensus 224 ~~kinv~ 230 (281)
T PRK06806 224 IRKINVA 230 (281)
T ss_pred CcEEEEh
Confidence 9888665
No 338
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=77.71 E-value=18 Score=37.41 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.-+++....||++|.|.. +-.++++++ .+|++=--++.+...++.++|||=+-+|
T Consensus 31 ~i~~AA~~ggAt~vDIAa---------------dp~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 31 AIVKAAEIGGATFVDIAA---------------DPELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred HHHHHHHccCCceEEecC---------------CHHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEec
Confidence 345556668999996632 223444443 5787777789999999999999999999
No 339
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=77.60 E-value=8.4 Score=46.18 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=39.0
Q ss_pred ChhhHHHHHHcCCcEEEEcccccccccc-ccccccccccccccccccccccCc----eeeccccCchhHHHHHHcCCcEE
Q psy3862 391 SPGDVAKAMGAGADFVMLGGMFAGHDQS-GGELTNIEYMFFPLVGDMNSYLGG----VVDGGCTSPGDVAKAMGAGADFV 465 (671)
Q Consensus 391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~i~gG~v~t~~~a~~l~aGAd~V 465 (671)
+.+|+++.+++|+++|-|. |..-+. ..+ ++..+. +..+++. +--.|+....++..+..+|||+|
T Consensus 169 ~~~el~~a~~~ga~iiGIN---nRdL~tf~vd-~~~t~~-------L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 169 TREEIERAIAAGAKVIGIN---ARNLKDLKVD-VNKYNE-------LAADLPDDVIKVAESGVFGAVEVEDYARAGADAV 237 (695)
T ss_pred CHHHHHHHHhCCCCEEEEe---CCCCccceeC-HHHHHH-------HHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 3577788888899988876 222110 011 111111 1222322 23467655666666789999999
Q ss_pred EECc
Q psy3862 466 MLGG 469 (671)
Q Consensus 466 ~vG~ 469 (671)
.||-
T Consensus 238 LIGe 241 (695)
T PRK13802 238 LVGE 241 (695)
T ss_pred EECH
Confidence 9994
No 340
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=77.37 E-value=31 Score=36.64 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=76.2
Q ss_pred cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHH
Q psy3862 55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILA 127 (671)
Q Consensus 55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~ 127 (671)
.++|++- |++-. ..++....++.|.-|+|=.-+++|+-..+..... .-++++.+....+ +.+|++++.+
T Consensus 93 ~~~Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt--~~~rl~~i~~ 168 (265)
T COG0159 93 VKVPIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT--PDERLKKIAE 168 (265)
T ss_pred CCCCEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHH
Confidence 5678765 65532 2455666677777788777888887544432111 1233433322222 3467777777
Q ss_pred hCCCc-eEEEeeccCCC----ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 128 ALPEI-EYICLDVANGY----TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 128 a~~~~-d~Ivld~a~G~----~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
...+- -.+......|. +..+.+.++++|+.. +..+++| .|.+++.++++.++ ||.+++++
T Consensus 169 ~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 169 AASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred hCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 63322 22333322332 223566777776643 4456666 67899999999999 99999854
No 341
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=77.17 E-value=13 Score=40.36 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHHHHHHHHH---hCCCceEEEEEeccHHHHHHHHH------CCCcEEEECcCCCceEEEEecccCCcchhhh---hcc-
Q psy3862 147 FVDFVRRIRE---MYPKHVIIAGNVVTGEMVEELIL------SGADVIKVGIGPGSVCTTRLKNKTSDFFLIQ---FYS- 213 (671)
Q Consensus 147 ~~~~ik~lr~---~~P~~~li~g~v~t~e~a~~Li~------AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~---~i~- 213 (671)
+.+.++..++ ..+...+|..-+.+.++++.+++ +|+|+|-+|--.=. ..++++ ..-.+.+ ++.
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~--~~~~~~--~~e~l~~av~~~~~ 261 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVP--LENGDV--DVSMLKEAVELING 261 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccc--ccccCC--CHHHHHHHHHhhCC
Confidence 3445555554 22333556667788999999999 99999988754000 000000 0000111 111
Q ss_pred ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 214 CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..| ++||| |.+.+.+....|+|.+-+|
T Consensus 262 ~~~lEaSGGI-t~~ni~~yA~tGVD~Is~G 290 (308)
T PLN02716 262 RFETEASGNV-TLDTVHKIGQTGVTYISSG 290 (308)
T ss_pred CceEEEECCC-CHHHHHHHHHcCCCEEEeC
Confidence 123 78888 8899999999999999877
No 342
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=77.12 E-value=4.9 Score=39.62 Aligned_cols=97 Identities=25% Similarity=0.238 Sum_probs=53.9
Q ss_pred CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchh--
Q psy3862 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFL-- 208 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~-- 208 (671)
+.+.+++....- ...+ .++..+...+++....+.+.++.+.+.|+|++.+.- .--|..|+..+.+.+
T Consensus 72 ~~dGvHl~~~~~---~~~~----~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gp----vf~T~sk~~~~~~g~~~ 140 (180)
T PF02581_consen 72 GADGVHLGQSDL---PPAE----ARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGP----VFPTSSKPGAPPLGLDG 140 (180)
T ss_dssp T-SEEEEBTTSS---SHHH----HHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEET----SS--SSSSS-TTCHHHH
T ss_pred CCCEEEeccccc---chHH----hhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECC----ccCCCCCccccccCHHH
Confidence 667788764321 1111 222222234666678888889999999999997632 211222322222211
Q ss_pred hhhcc---ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862 209 IQFYS---CIP--QAGNVVTGEMVEELILSGADVIK 239 (671)
Q Consensus 209 i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvk 239 (671)
+..+. .+| +-||| |.+.+..+.++||+|+=
T Consensus 141 l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 141 LREIARASPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp HHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred HHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 11111 256 68888 78889999999999983
No 343
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.88 E-value=9.1 Score=41.02 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
.++++.+.+++ ++|.|.+|.. .++.+.+.++.+++..|...+.+....+.+.++...+.|+|+|++.
T Consensus 198 tleqa~ea~~a--gaDiI~LDn~--~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRA--QPDVLQLDKF--SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 45667777777 7788888833 4566666666554445666666655678999999999999999663
No 344
>KOG2335|consensus
Probab=76.84 E-value=9 Score=42.07 Aligned_cols=126 Identities=27% Similarity=0.327 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhC--CCceEEEEEe---ccHHHHHHHHHCCCcEEEECcCCCceEEEE-ecccCCcchhhhhcc----c
Q psy3862 145 QTFVDFVRRIREMY--PKHVIIAGNV---VTGEMVEELILSGADVIKVGIGPGSVCTTR-LKNKTSDFFLIQFYS----C 214 (671)
Q Consensus 145 ~~~~~~ik~lr~~~--P~~~li~g~v---~t~e~a~~Li~AGaD~IvVdga~G~~~~t~-v~~~~~~~~~i~~i~----~ 214 (671)
+-+-++++.++... |...+|==.. -|.+-++.+.+||++.+.| ||.-+..+ .+...-+..-+..+. .
T Consensus 127 eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV---HGRtr~~kg~~~~pad~~~i~~v~~~~~~ 203 (358)
T KOG2335|consen 127 ELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV---HGRTREQKGLKTGPADWEAIKAVRENVPD 203 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE---ecccHHhcCCCCCCcCHHHHHHHHHhCcC
Confidence 34456667666554 4333432222 3678899999999999988 44321111 111111222222221 2
Q ss_pred cC--CccccccHHHHHHHHH-cCCCEEEEcccCCCcccccee--cccCcchhhhHHHHHHHhhhcC
Q psy3862 215 IP--QAGNVVTGEMVEELIL-SGADVIKVGIGPGSVCTTRLK--TGVGYPQFSAVLECADAAHGLG 275 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li~-aGAdgvkVG~~~~~~~~Tr~V--~gv~~~~~~~~~~~~~~~~~~~ 275 (671)
+| +-|||-+.+-+...+. .|||||.+|=|. .---..- .|.+.|...-+-+=-+.+.+++
T Consensus 204 ipviaNGnI~~~~d~~~~~~~tG~dGVM~argl--L~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~ 267 (358)
T KOG2335|consen 204 IPVIANGNILSLEDVERCLKYTGADGVMSARGL--LYNPALFLTAGYGPTPWGCVEEYLDIAREFG 267 (358)
T ss_pred CcEEeeCCcCcHHHHHHHHHHhCCceEEecchh--hcCchhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence 45 7999999999999998 999999988442 1111122 5666677766666667776654
No 345
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.74 E-value=6.4 Score=41.68 Aligned_cols=66 Identities=24% Similarity=0.344 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 117 KDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 117 ~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
+..+.+.+.+.+ ++|++.+|.. .++.+.+.++.+++. |...+++....+.+.+..+.++|||.|.+
T Consensus 189 ~t~eea~~A~~~--gaD~I~ld~~--~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 189 ETLEEAEEALEA--GADIIMLDNM--SPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CCHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 344555555555 6788888744 344555555544433 55556555557899999999999999977
No 346
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=76.51 E-value=11 Score=40.53 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
-+.+-|.+..+.|.=.++=-|+++|+..+.+...++- ..+-++|+++++.++...+.|+|+|.+. +--||...+++
T Consensus 216 ~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~~~~-~~ieaSGGI~~~ni~~yA~tGVD~Is~g--althsa~~lD~ 291 (296)
T PRK09016 216 ENLDELDQALKAGADIIMLDNFTTEQMREAVKRTNGR-ALLEVSGNVTLETLREFAETGVDFISVG--ALTKHVQALDL 291 (296)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhcCC-eEEEEECCCCHHHHHHHHhcCCCEEEeC--ccccCCCccce
Confidence 3588899999999988888999999999998765431 2477899999999999999999999985 45565544443
No 347
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=76.38 E-value=9.6 Score=42.33 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ-FSAVLECADAAHGLG 275 (671)
Q Consensus 218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~ 275 (671)
+-+-...+.+..++++|++.|++.+...-... +...+..+.+ +..+.++.+.|+++|
T Consensus 72 ~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~-~~~~~~s~~~~l~~~~~~v~~a~~~G 129 (378)
T PRK11858 72 ALNRAVKSDIDASIDCGVDAVHIFIATSDIHI-KHKLKKTREEVLERMVEAVEYAKDHG 129 (378)
T ss_pred EEcccCHHHHHHHHhCCcCEEEEEEcCCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 44555688899999999999999864333222 2233444443 345667777777655
No 348
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.30 E-value=12 Score=40.29 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
-+.+-|.+..+.|.=.++=-|++||+..+.+...++. ..+-++|+++.+.+....+.|+|+|.+. +--||...+++
T Consensus 213 etleea~eA~~aGaDiImLDnmspe~l~~av~~~~~~-~~lEaSGGIt~~ni~~yA~tGVD~IS~g--althsa~~lD~ 288 (294)
T PRK06978 213 ETLAQLETALAHGAQSVLLDNFTLDMMREAVRVTAGR-AVLEVSGGVNFDTVRAFAETGVDRISIG--ALTKDVRATDY 288 (294)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcCC-eEEEEECCCCHHHHHHHHhcCCCEEEeC--ccccCCcccce
Confidence 4588899999999999999999999999998766542 2477899999999999999999999985 45555544443
No 349
>PLN02591 tryptophan synthase
Probab=76.20 E-value=15 Score=38.65 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=58.0
Q ss_pred HHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceE-EEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862 122 LKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVI-IAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK 200 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~l-i~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~ 200 (671)
+.++-++ +++.+++...+ .+...+..+..++.. ...+ ++.-..+.++.+.+.+..-++|=.=+..|.. -.+
T Consensus 99 ~~~~~~a--Gv~GviipDLP--~ee~~~~~~~~~~~g-l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvT---G~~ 170 (250)
T PLN02591 99 MATIKEA--GVHGLVVPDLP--LEETEALRAEAAKNG-IELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVT---GAR 170 (250)
T ss_pred HHHHHHc--CCCEEEeCCCC--HHHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCc---CCC
Confidence 4445555 77766554321 122223333333221 1122 2222345688888877765666432222211 011
Q ss_pred ccCC-cc-hhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 201 NKTS-DF-FLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 201 ~~~~-~~-~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
...+ .+ ..++.++ ..| ++-||.|.++++.+++.||||+-||
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 1111 11 1122222 356 6889999999999999999999998
No 350
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=76.12 E-value=26 Score=38.02 Aligned_cols=69 Identities=26% Similarity=0.362 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCcEEEECcCCCceE-EEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVC-TTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~-~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
+.++.|.++|+|.|.+-.+.-+.. ...+... ..++....++ .+| ..|++.|.+.+..+++.| ||.|-+|
T Consensus 245 ~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~-~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 245 ELAKALKELGVDLIDVSSGGNSPAQKIPVGPG-YQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcccccCCCcc-ccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 556678889999998743211100 0000000 0111111221 356 689999999999999998 9998766
No 351
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=75.58 E-value=16 Score=38.04 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=61.7
Q ss_pred cHHHHHHHHHcCCe-EEeecCCC--HHHHHHhhhcCcc-cccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC-
Q psy3862 69 TFEMAKHLAKHGLF-TTIHKYYT--LEEWKAFAVQNPD-VIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY- 143 (671)
Q Consensus 69 ~~~lA~Ala~~ggl-gvIh~n~~--~Eeq~~~i~~~p~-~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~- 143 (671)
..+....++++|.= =++|.=.+ +.+..+.+++.-. ...-+.++++++. +.+..++....-+.+.+++..++-
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~---~~i~~~l~~vD~VLiMtV~PGfgGQ 156 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPI---SLLEPYLDQIDLIQILTLDPRTGTK 156 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCH---HHHHHHHhhcCEEEEEEECCCCCCc
Confidence 35566778888754 45884321 2233344443210 0111223455544 444455553222334455544332
Q ss_pred --ChHHHHHHHHHHHh----CCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 144 --TQTFVDFVRRIREM----YPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 144 --~~~~~~~ik~lr~~----~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.....++++++++. ..+..+.+=...+.+.++.+.+||||++|+++
T Consensus 157 ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GS 208 (228)
T PRK08091 157 APSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGS 208 (228)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 34566677776542 22322322233578999999999999998854
No 352
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=75.47 E-value=74 Score=32.66 Aligned_cols=156 Identities=24% Similarity=0.242 Sum_probs=80.1
Q ss_pred cccHHHHHHHHHcC--CeEEee-----cCCCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeec
Q psy3862 67 VGTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDV 139 (671)
Q Consensus 67 vt~~~lA~Ala~~g--glgvIh-----~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~ 139 (671)
.+..+=|.+.++.| -+|+|+ |..++|+..+.....|. .+.+++....+ .+.+.++++.. ..+++-+
T Consensus 9 lt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~-~~~VgVf~n~~---~~~i~~i~~~~-~ld~VQl-- 81 (208)
T COG0135 9 LTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK-VKVVGVFVNES---IEEILEIAEEL-GLDAVQL-- 81 (208)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC-CCEEEEECCCC---HHHHHHHHHhc-CCCEEEE--
Confidence 34555566666766 458887 45677665544444443 33455544433 34444554431 2344443
Q ss_pred cCCCChHHHHHHHHHHHhCCCceEEEEEecc--HHHHHHHHHCCCcEEEECcC-----CCceE-EEE-ecccCCcchhhh
Q psy3862 140 ANGYTQTFVDFVRRIREMYPKHVIIAGNVVT--GEMVEELILSGADVIKVGIG-----PGSVC-TTR-LKNKTSDFFLIQ 210 (671)
Q Consensus 140 a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t--~e~a~~Li~AGaD~IvVdga-----~G~~~-~t~-v~~~~~~~~~i~ 210 (671)
|| ..-.+.++++++.++...+-+=.+.. .........--+|.+.+|+- +|+.. ... +....
T Consensus 82 -HG--~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------- 151 (208)
T COG0135 82 -HG--DEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------- 151 (208)
T ss_pred -CC--CCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc-------
Confidence 23 22344555555543111111222321 13444455677999999993 44432 111 11110
Q ss_pred hccccC--CccccccHHHHHHHHHcCC-CEEEEc
Q psy3862 211 FYSCIP--QAGNVVTGEMVEELILSGA-DVIKVG 241 (671)
Q Consensus 211 ~i~~~p--~aGnV~t~~~a~~li~aGA-dgvkVG 241 (671)
-...| .|||+ +.+.+..+++.+. .||=|-
T Consensus 152 -~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvS 183 (208)
T COG0135 152 -RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVS 183 (208)
T ss_pred -cccCCEEEECCC-CHHHHHHHHHhcCCceEEec
Confidence 00123 69998 6778888888777 777654
No 353
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=75.47 E-value=9.8 Score=39.15 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCe-EEeecCCC--HHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC---
Q psy3862 70 FEMAKHLAKHGLF-TTIHKYYT--LEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY--- 143 (671)
Q Consensus 70 ~~lA~Ala~~ggl-gvIh~n~~--~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~--- 143 (671)
.+....++++|.= =++|.-.+ +.+..+.+++.- ..--+.+++.++.+ .+..++...+.+.+.+++...|-
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g-~k~GlalnP~Tp~~---~i~~~l~~~D~vlvMtV~PGfgGq~f 146 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHG-CQAGVVLNPATPLH---HLEYIMDKVDLILLMSVNPGFGGQSF 146 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcC-CcEEEEeCCCCCHH---HHHHHHHhCCeEEEEEecCCCCCcee
Confidence 4566667777643 45884322 223344444321 11012234444443 44445553233344455554432
Q ss_pred ChHHHHHHHHHHHhCC----CceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 144 TQTFVDFVRRIREMYP----KHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 144 ~~~~~~~ik~lr~~~P----~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.....+.++++++..+ ...+.+....+.+.+..+.++|||.+++.+
T Consensus 147 i~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 147 IPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred cHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 2445556666654322 233434344568999999999999998853
No 354
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.42 E-value=6.1 Score=42.09 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=17.5
Q ss_pred eccccCchhH-HHHHHcCCcEEEECc
Q psy3862 445 DGGCTSPGDV-AKAMGAGADFVMLGG 469 (671)
Q Consensus 445 ~gG~v~t~~~-a~~l~aGAd~V~vG~ 469 (671)
.|| +.+++- .+++.+|||+|++|.
T Consensus 240 ~GG-I~s~~da~~~l~~GAd~V~igr 264 (300)
T TIGR01037 240 VGG-ITSFEDALEFLMAGASAVQVGT 264 (300)
T ss_pred ECC-CCCHHHHHHHHHcCCCceeecH
Confidence 466 455555 447789999999985
No 355
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.34 E-value=40 Score=33.62 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCceEEEeeccCC---CChHHHHHHHHHHHhCCCceEE-EEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 120 AGLKEILAALPEIEYICLDVANG---YTQTFVDFVRRIREMYPKHVII-AGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G---~~~~~~~~ik~lr~~~P~~~li-~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+.+....+. +++.+.+..... ......+.++++++..|...+. .|.+ +.+.+..+.++|+|.+++.+
T Consensus 117 ~~~~~~~~~--g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGs 187 (206)
T TIGR03128 117 KRAKELKEL--GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGG 187 (206)
T ss_pred HHHHHHHHc--CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEee
Confidence 455555555 678887753211 1123456677776666654443 4444 78899999999999998743
No 356
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=75.05 E-value=8.8 Score=38.70 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862 226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272 (671)
Q Consensus 226 ~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~ 272 (671)
.++.++++|||.|-+-+-.|+.= .|--.-...-+.++.++|+
T Consensus 74 eve~A~~~GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~ 115 (203)
T cd00959 74 EAREAIADGADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG 115 (203)
T ss_pred HHHHHHHcCCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC
Confidence 36788999999999887776431 1111234555666666664
No 357
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=74.86 E-value=26 Score=37.13 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=43.7
Q ss_pred Chhh-HHHHHHHHH-hCCCceEEEeeccCCCChHHHHHHHHHHHhC-CC---------------ceEEEEEec-----cH
Q psy3862 115 SAKD-LAGLKEILA-ALPEIEYICLDVANGYTQTFVDFVRRIREMY-PK---------------HVIIAGNVV-----TG 171 (671)
Q Consensus 115 ~~~d-~~rl~~l~~-a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~---------------~~li~g~v~-----t~ 171 (671)
++++ .+++..+++ + +++.+.+... ....+.++.+.+.. |. +.++.|.-. ..
T Consensus 91 ~~~~av~~a~r~~~~a--Ga~aVkiEdg----~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i 164 (264)
T PRK00311 91 SPEQALRNAGRLMKEA--GAHAVKLEGG----EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLL 164 (264)
T ss_pred CHHHHHHHHHHHHHHh--CCeEEEEcCc----HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHH
Confidence 3443 466677777 6 7888888632 45566777765432 32 123333211 24
Q ss_pred HHHHHHHHCCCcEEEECcC
Q psy3862 172 EMVEELILSGADVIKVGIG 190 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga 190 (671)
++++++.+||||.|++.+-
T Consensus 165 ~ra~a~~eAGA~~i~lE~v 183 (264)
T PRK00311 165 EDAKALEEAGAFALVLECV 183 (264)
T ss_pred HHHHHHHHCCCCEEEEcCC
Confidence 7899999999999988653
No 358
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=74.78 E-value=27 Score=38.24 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=63.4
Q ss_pred CceEEEeeccCCCC------------------------hHHHHHHHHHHHhC----CCceEEEEEe-----cc----HHH
Q psy3862 131 EIEYICLDVANGYT------------------------QTFVDFVRRIREMY----PKHVIIAGNV-----VT----GEM 173 (671)
Q Consensus 131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~----P~~~li~g~v-----~t----~e~ 173 (671)
+.|.|-++.+||++ +-+.+.++.+|+.. |....+...- .+ .+.
T Consensus 154 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~ 233 (343)
T cd04734 154 GLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEI 233 (343)
T ss_pred CCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHH
Confidence 77888888888751 12345566666653 2222333321 12 355
Q ss_pred HHHHHHCC-CcEEEECcCCCceE---EEEeccc-CCc---chhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEE
Q psy3862 174 VEELILSG-ADVIKVGIGPGSVC---TTRLKNK-TSD---FFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIK 239 (671)
Q Consensus 174 a~~Li~AG-aD~IvVdga~G~~~---~t~v~~~-~~~---~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgvk 239 (671)
++.|.++| +|+|.+.++.-... ....... .+. .+....++ .+| ..|++-|.+.+.++++-| ||.|-
T Consensus 234 ~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~ 313 (343)
T cd04734 234 AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeee
Confidence 67888898 89998843210000 0001110 111 22222232 356 689999999999999865 99997
Q ss_pred Ec
Q psy3862 240 VG 241 (671)
Q Consensus 240 VG 241 (671)
+|
T Consensus 314 ~g 315 (343)
T cd04734 314 MT 315 (343)
T ss_pred ec
Confidence 77
No 359
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=74.11 E-value=15 Score=37.56 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=38.8
Q ss_pred CCceEEEeeccCCCCh-HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 130 PEIEYICLDVANGYTQ-TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 130 ~~~d~Ivld~a~G~~~-~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
-+.+.+.+....|... .-.+.++++++.......++|.+.+.|+++.+.++|||.+++
T Consensus 146 ~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 146 FGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred cCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 3667787776544321 114555555554322245666789999999999999999987
No 360
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.09 E-value=5.5 Score=42.50 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=18.1
Q ss_pred eeccccCchhHH-HHHHcCCcEEEECc
Q psy3862 444 VDGGCTSPGDVA-KAMGAGADFVMLGG 469 (671)
Q Consensus 444 i~gG~v~t~~~a-~~l~aGAd~V~vG~ 469 (671)
..|| +.+++-+ +.+.+|||.|++|.
T Consensus 239 ~~GG-I~~~~da~~~l~aGAd~V~igr 264 (301)
T PRK07259 239 GMGG-ISSAEDAIEFIMAGASAVQVGT 264 (301)
T ss_pred EECC-CCCHHHHHHHHHcCCCceeEcH
Confidence 3566 5555554 47899999999985
No 361
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=74.08 E-value=14 Score=38.27 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCceEEEeecc---CCCChHHHHHHHHHHHhCCC--ceE-EEE-Eecc-H---HHHHHHHHCCCcEEEECc
Q psy3862 121 GLKEILAALPEIEYICLDVA---NGYTQTFVDFVRRIREMYPK--HVI-IAG-NVVT-G---EMVEELILSGADVIKVGI 189 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a---~G~~~~~~~~ik~lr~~~P~--~~l-i~g-~v~t-~---e~a~~Li~AGaD~IvVdg 189 (671)
+.+..++...++--++++.. .|..+.+.+-|+.+++..+. ..+ |-- ..-+ . ...+..+++|+|+|.-.+
T Consensus 82 Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTST 161 (228)
T COG0274 82 EAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTST 161 (228)
T ss_pred HHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 44555665333222344432 13334455556666655432 221 221 2222 2 345567889999998765
Q ss_pred CCCceEEEEecccCCcchhhhhcc-----cc--CCccccccHHHHHHHHHcCCCEEEEcc
Q psy3862 190 GPGSVCTTRLKNKTSDFFLIQFYS-----CI--PQAGNVVTGEMVEELILSGADVIKVGI 242 (671)
Q Consensus 190 a~G~~~~t~v~~~~~~~~~i~~i~-----~~--p~aGnV~t~~~a~~li~aGAdgvkVG~ 242 (671)
+-... .-++.-+.++. .+ -++|||-|.+++++++++||. |+|.
T Consensus 162 Gf~~~--------gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~--RiGt 211 (228)
T COG0274 162 GFSAG--------GATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGAT--RIGT 211 (228)
T ss_pred CCCCC--------CCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHH--Hhcc
Confidence 22110 00111111121 11 179999999999999999954 6663
No 362
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.00 E-value=11 Score=34.37 Aligned_cols=87 Identities=20% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccc
Q psy3862 347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN 424 (671)
Q Consensus 347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~ 424 (671)
.|...+-+..|+-+++ .+.++|++.+.+.+ ..+|+++|-.+...|.....++++
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~------------------------~~pdvV~iS~~~~~~~~~~~~~i~ 72 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKE------------------------EDADAIGLSGLLTTHMTLMKEVIE 72 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------------------------cCCCEEEEeccccccHHHHHHHHH
Confidence 3555677778888877 56777777777654 234555553221222233333333
Q ss_pred ccccccc-cccccccccCceeeccccCchhHHHHHHcCCcEE
Q psy3862 425 IEYMFFP-LVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFV 465 (671)
Q Consensus 425 ~~~~~~~-~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V 465 (671)
.++..+| .+ .++.||...+.+-..+...|+|.+
T Consensus 73 ~l~~~~~~~~--------~i~vGG~~~~~~~~~~~~~G~D~~ 106 (119)
T cd02067 73 ELKEAGLDDI--------PVLVGGAIVTRDFKFLKEIGVDAY 106 (119)
T ss_pred HHHHcCCCCC--------eEEEECCCCChhHHHHHHcCCeEE
Confidence 3333332 22 156888877765545678999987
No 363
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=73.70 E-value=23 Score=39.23 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHcCCeEEEc------cC-CCHHHHHHHHhc-Cccc--ccc--eeeecccChhhHHHHHH-cCCcEEEEcc
Q psy3862 344 GTFEMAKHLAKHGLFTTIH------KY-YTLEEWKAFAVQ-NPDV--IKH--VADGGCTSPGDVAKAMG-AGADFVMLGG 410 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvih------r~-~~~e~~~~~v~~-~~~~--~~~--v~~~~~~~~~~~~~l~~-aG~d~i~id~ 410 (671)
.++..=-.|+++-|+-.+| |+ ++.|+..+.... .+.. ++. -..+|+..+.++..+++ .|.|+++.=|
T Consensus 268 ~~~~~~~kl~RlaGad~~~~~~~~gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~G 347 (367)
T cd08205 268 SHFLLLGKLMRLAGADAVIFPGPGGRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHPGRVPELYRDYGPDVILLAG 347 (367)
T ss_pred CCHHHHHHHHHHcCCCccccCCCccCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCHHHHHHHHHHhCCcEEEEcC
Confidence 3344444567777777776 33 456665554442 1221 222 23366778888888865 5999877654
Q ss_pred cc-cccc
Q psy3862 411 MF-AGHD 416 (671)
Q Consensus 411 ~a-~gh~ 416 (671)
.. +||.
T Consensus 348 Ggi~gHp 354 (367)
T cd08205 348 GGILGHP 354 (367)
T ss_pred chhcCCC
Confidence 33 7883
No 364
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.44 E-value=11 Score=40.19 Aligned_cols=152 Identities=13% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeec
Q psy3862 225 EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRP 304 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P 304 (671)
+++..++++|++.|.+.+.......++..--.--..+.-+.++.+.|+++|
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G----------------------------- 128 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNG----------------------------- 128 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC-----------------------------
Q ss_pred CCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC-----CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc
Q psy3862 305 KRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-----TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD 379 (671)
Q Consensus 305 ~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~-----~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~ 379 (671)
..+..+.|| .+ +++.-..++
T Consensus 129 ----------------------------~~v~~~~~d-~~~~~r~~~~~~~~~~-------------------------- 153 (280)
T cd07945 129 ----------------------------IEVNIYLED-WSNGMRDSPDYVFQLV-------------------------- 153 (280)
T ss_pred ----------------------------CEEEEEEEe-CCCCCcCCHHHHHHHH--------------------------
Q ss_pred cccceeeecccChhhHHHHHHcCCcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHH
Q psy3862 380 VIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAM 458 (671)
Q Consensus 380 ~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l 458 (671)
..+.++|+|-|+|-++. ..+-..+.++++.++..+|.+..--=+.. +-| ....+.-.++
T Consensus 154 ----------------~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hn---d~G-la~AN~laA~ 213 (280)
T cd07945 154 ----------------DFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHN---DYD-LAVANVLAAV 213 (280)
T ss_pred ----------------HHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCC---CCC-HHHHHHHHHH
Q ss_pred HcCCcEEE--ECccccCCccCCCc
Q psy3862 459 GAGADFVM--LGGMFAGHDQSGGE 480 (671)
Q Consensus 459 ~aGAd~V~--vG~~g~G~s~ctt~ 480 (671)
++||+.|= ++-+|.++..+.++
T Consensus 214 ~aGa~~vd~s~~GlGe~aGN~~~E 237 (280)
T cd07945 214 KAGIKGLHTTVNGLGERAGNAPLA 237 (280)
T ss_pred HhCCCEEEEecccccccccCccHH
No 365
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.42 E-value=9.2 Score=39.03 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=41.8
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.++...|.+.|-+.-+.|.. ...+...+..++ .+| ++|||-|.++++.++++|||++-||
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~-------~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGAS-------YPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCC-------CCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 444556799999887655542 001122222222 346 7999999999999999999999886
No 366
>PRK07695 transcriptional regulator TenI; Provisional
Probab=73.21 E-value=1e+02 Score=30.70 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=52.8
Q ss_pred HHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc
Q psy3862 124 EILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK 202 (671)
Q Consensus 124 ~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~ 202 (671)
+++.. +++.+.+..-+.....+.+.++.+++.. +...++. | +..+.+.+.|+|.+-+.... .....+++.
T Consensus 22 ~~~~~--g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~lii-n----~~~~la~~~~~~gvHl~~~~--~~~~~~r~~ 92 (201)
T PRK07695 22 MQIHS--EVDYIHIREREKSAKELYEGVESLLKKGVPASKLII-N----DRVDIALLLNIHRVQLGYRS--FSVRSVREK 92 (201)
T ss_pred HHHhC--CCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEE-E----CHHHHHHHcCCCEEEeCccc--CCHHHHHHh
Confidence 35555 6777777655433455566666665432 2222222 2 34666778899988442211 001111111
Q ss_pred CCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 203 TSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 203 ~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+|. ..++-.+-|.+.++.+.++|||-+-.|
T Consensus 93 ~~~---------~~ig~s~~s~e~a~~a~~~Gadyi~~g 122 (201)
T PRK07695 93 FPY---------LHVGYSVHSLEEAIQAEKNGADYVVYG 122 (201)
T ss_pred CCC---------CEEEEeCCCHHHHHHHHHcCCCEEEEC
Confidence 111 113345667777888888888887444
No 367
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=73.05 E-value=64 Score=32.53 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHhCCCceEEEeeccC---CCC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHC-CCcEEEEC
Q psy3862 122 LKEILAALPEIEYICLDVAN---GYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILS-GADVIKVG 188 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~---G~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~A-GaD~IvVd 188 (671)
++.+-+. +++.+++..-. ... ....+.++++++......+..|.+.+.+.+..+++. |+|.|.+.
T Consensus 144 ~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 144 AKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 3344444 67777664321 011 123455666665432223445667899999999998 89999663
No 368
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=73.03 E-value=22 Score=39.23 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~ 277 (671)
-+.++.+++.|||+|.+|-- -.|..+.---.-..+ +.|..+.||++|..
T Consensus 16 l~~l~~ai~~GADaVY~G~~--~~~~R~~a~nfs~~~---l~e~i~~ah~~gkk 64 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEK--EFGLRRRALNFSVED---LAEAVELAHSAGKK 64 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCc--ccccccccccCCHHH---HHHHHHHHHHcCCe
Confidence 37888999999999999932 233333321122223 77888888987754
No 369
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=72.88 E-value=13 Score=40.96 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=48.6
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccCCcccc-ccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIPQAGNV-VTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p~aGnV-~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
|.++.++|.+||+|.|.+..-.=.. +...++++. .+|...-| =+++-|..++++|+|.+|+- ||=
T Consensus 44 tv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~----------~iPlvADIHFd~~lAl~a~~~G~~~iRIN--PGN 111 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQL----------PVPLVADIHFDYRLALAAAEAGADALRIN--PGN 111 (360)
T ss_pred HHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcC----------CCCEEEecCCCHHHHHHHHHhCCCEEEEC--CCC
Confidence 3467778899999999773311000 111122111 23433333 38999999999999999865 877
Q ss_pred ccccceecccCc--chhhhHHHHHHHh
Q psy3862 247 VCTTRLKTGVGY--PQFSAVLECADAA 271 (671)
Q Consensus 247 ~~~Tr~V~gv~~--~~~~~~~~~~~~~ 271 (671)
+ |. -.+..|.++|+..
T Consensus 112 i---------g~~~~~v~~vv~~ak~~ 129 (360)
T PRK00366 112 I---------GKRDERVREVVEAAKDY 129 (360)
T ss_pred C---------CchHHHHHHHHHHHHHC
Confidence 6 33 3566666665443
No 370
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.85 E-value=23 Score=36.13 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccC--Ccccc--ccHH----HHHHHHHcCCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIP--QAGNV--VTGE----MVEELILSGADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p--~aGnV--~t~~----~a~~li~aGAdgvkVG 241 (671)
++...++|+|+|.+.-..+-....++.+.. .+| +.||+ .|.+ .+..++++||+|+-+|
T Consensus 149 ~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~----------~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 149 ARIGAELGADIVKTKYTGDAESFKEVVEGC----------PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHHHHCCCEEEecCCCCHHHHHHHHhcC----------CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 566888999999884211100011111110 134 45665 4554 4889999999999887
No 371
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.74 E-value=12 Score=38.48 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=45.2
Q ss_pred eEEEEE-eccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc--chhhhhcc---ccC--CccccccHHHHHHHHHc
Q psy3862 162 VIIAGN-VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD--FFLIQFYS---CIP--QAGNVVTGEMVEELILS 233 (671)
Q Consensus 162 ~li~g~-v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~--~~~i~~i~---~~p--~aGnV~t~~~a~~li~a 233 (671)
.+++.. ..+.+.+..+.+.|+|+|.+.- .- +..|+..++ +..+..+. .+| +-||| |.+.+..++++
T Consensus 111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp----v~-t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~ 184 (221)
T PRK06512 111 MIVGFGNLRDRHGAMEIGELRPDYLFFGK----LG-ADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAET 184 (221)
T ss_pred CEEEecCCCCHHHHHHhhhcCCCEEEECC----CC-CCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHh
Confidence 345443 4567777778889999997742 21 111211111 22222121 367 67888 99999999999
Q ss_pred CCCEEEE
Q psy3862 234 GADVIKV 240 (671)
Q Consensus 234 GAdgvkV 240 (671)
||+||=|
T Consensus 185 GA~giAv 191 (221)
T PRK06512 185 GAEFVAL 191 (221)
T ss_pred CCCEEEE
Confidence 9999943
No 372
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.74 E-value=14 Score=39.71 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccc--cceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVI--KHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~--~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
-+.+-|.+..+.|.=.++=-|++||+..+.+...+..- ..+-++|+++++.+....+.|+|+|.+.
T Consensus 207 ~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 207 DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 46788888899999888889999999999886532211 2477899999999999999999999985
No 373
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=72.13 E-value=7.7 Score=41.52 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEE
Q psy3862 396 AKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFV 465 (671)
Q Consensus 396 ~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V 465 (671)
.++++.|||+|=|.+-+..-....+....++++..|.++.+++-+.-. +-=--...++++ ++++|||.|
T Consensus 45 ~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~-ISIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 45 NLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW-ISVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEECCCHHHHHHHHHcCCCEE
Confidence 445788999999986554332233434444555566666555322211 111123455666 689999976
No 374
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=72.13 E-value=15 Score=34.77 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHcCCeEEEc--cCCCHHHHHHHHhc
Q psy3862 351 HLAKHGLFTTIH--KYYTLEEWKAFAVQ 376 (671)
Q Consensus 351 ~la~~Gglgvih--r~~~~e~~~~~v~~ 376 (671)
.+-+..||-+++ .+.++|+.++.+.+
T Consensus 21 ~~L~~~GfeVidLG~~v~~e~~v~aa~~ 48 (128)
T cd02072 21 HAFTEAGFNVVNLGVLSPQEEFIDAAIE 48 (128)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 456678888888 78888888887755
No 375
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=72.09 E-value=30 Score=40.87 Aligned_cols=188 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHCCCcEEEECc-CCCceEEEEecccCCcchhhhhc-cccC--------CccccccHHH---------HHHHHHcC
Q psy3862 174 VEELILSGADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFY-SCIP--------QAGNVVTGEM---------VEELILSG 234 (671)
Q Consensus 174 a~~Li~AGaD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i-~~~p--------~aGnV~t~~~---------a~~li~aG 234 (671)
++.|.++|++.|-+.| |.-..|...+... +..-++.+ +.+| -+-|+....- ++.+.++|
T Consensus 33 a~~ld~~G~~siE~~GGatf~~~~~~~~e~--p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~G 110 (593)
T PRK14040 33 AAKLDKVGYWSLESWGGATFDACIRFLGED--PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNG 110 (593)
T ss_pred HHHHHHcCCCEEEecCCcchhhhccccCCC--HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcC
Q ss_pred CCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCc
Q psy3862 235 ADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSE 314 (671)
Q Consensus 235 AdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~e 314 (671)
+|.+||.....-+ .-+.++.++|+++|.+ .+
T Consensus 111 id~~rifd~lnd~--------------~~~~~ai~~ak~~G~~-----------------------------------~~ 141 (593)
T PRK14040 111 MDVFRVFDAMNDP--------------RNLETALKAVRKVGAH-----------------------------------AQ 141 (593)
T ss_pred CCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCe-----------------------------------EE
Q ss_pred ccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhh
Q psy3862 315 VDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGD 394 (671)
Q Consensus 315 Vdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~ 394 (671)
+.+.-..+ --++++.+.+.++
T Consensus 142 ~~i~yt~~----------------------------------------p~~~~~~~~~~a~------------------- 162 (593)
T PRK14040 142 GTLSYTTS----------------------------------------PVHTLQTWVDLAK------------------- 162 (593)
T ss_pred EEEEEeeC----------------------------------------CccCHHHHHHHHH-------------------
Q ss_pred HHHHHHcCCcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 395 VAKAMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 395 ~~~l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
.+.++|+|.|+|-+++ .-.-...-++++.++..+ +.--+++-|- +-|. .+.+.-.++++|||.|=.-+ .|
T Consensus 163 --~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~---~~pi~~H~Hn-t~Gl-A~An~laAieAGa~~vD~ai--~g 233 (593)
T PRK14040 163 --QLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV---DVPLHLHCHA-TTGL-STATLLKAIEAGIDGVDTAI--SS 233 (593)
T ss_pred --HHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc---CCeEEEEECC-CCch-HHHHHHHHHHcCCCEEEecc--cc
Q ss_pred CccCCCc
Q psy3862 474 HDQSGGE 480 (671)
Q Consensus 474 ~s~ctt~ 480 (671)
-+.+++.
T Consensus 234 lG~~~Gn 240 (593)
T PRK14040 234 MSMTYGH 240 (593)
T ss_pred ccccccc
No 376
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=71.98 E-value=34 Score=36.02 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-c--ccC--Cccccc--cHHHHHHHH----HcCCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVV--TGEMVEELI----LSGADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~--t~~~a~~li----~aGAdgvkVG 241 (671)
++.+.+.|||+|+..-. |. ...+..+ . .+| ++|||- |.++++.++ ++||+|+=+|
T Consensus 166 ~~~a~e~GAD~vKt~~~-~~------------~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~g 231 (267)
T PRK07226 166 ARVAAELGADIVKTNYT-GD------------PESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVG 231 (267)
T ss_pred HHHHHHHCCCEEeeCCC-CC------------HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 67778899999987522 21 1111111 1 245 799999 888777775 9999977444
No 377
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=71.78 E-value=32 Score=37.26 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=35.6
Q ss_pred HHcCCcEEEEcccc--ccccccccccccccccccccccccccccC-ceeeccccCchhHHH-HH-HcCCcEEEECc
Q psy3862 399 MGAGADFVMLGGMF--AGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AM-GAGADFVMLGG 469 (671)
Q Consensus 399 ~~aG~d~i~id~~a--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l-~aGAd~V~vG~ 469 (671)
.++|+|+|.|.+-. .+++....++ ..+..+|+... .++.-|.+.+.+-++ .+ ..|||+||+|.
T Consensus 158 ~~~Gvd~i~Vh~Rt~~~~y~g~~~~~--------~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 158 QQAGATELVVHGRTKEDGYRAEHINW--------QAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred HhcCCCEEEECCCCCccCCCCCcccH--------HHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 56899999986432 2232211111 11222333322 245555577777777 45 69999999996
No 378
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=71.75 E-value=33 Score=35.27 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCeEEEccCC---CHHHHHHHHhcCcccccceeeecccC----hhhHHHHHHcCCcEEEEccccccccc-
Q psy3862 346 FEMAKHLAKHGLFTTIHKYY---TLEEWKAFAVQNPDVIKHVADGGCTS----PGDVAKAMGAGADFVMLGGMFAGHDQ- 417 (671)
Q Consensus 346 ~~mA~~la~~Gglgvihr~~---~~e~~~~~v~~~~~~~~~v~~~~~~~----~~~~~~l~~aG~d~i~id~~a~gh~~- 417 (671)
.+....+++.|.=-+.-..+ .+.+..+.+++.- +.++-..+ .+.+..+++ -+|.+.+=++-.|..-
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g-----~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHG-----CQAGVVLNPATPLHHLEYIMD-KVDLILLMSVNPGFGGQ 144 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcC-----CcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEecCCCCCc
Confidence 34556677776433322222 3556666666531 11222222 244554443 5777777644455542
Q ss_pred cccccccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 418 SGGELTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
..+. ..+..+..++++.. . .++|| +...++.++.++|||++.+|.
T Consensus 145 ~fi~------~~lekI~~l~~~~~~~~~~~~I~vdGG-I~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 145 SFIP------HTLDKLRAVRKMIDESGRDIRLEIDGG-VKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred eecH------hHHHHHHHHHHHHHhcCCCeeEEEECC-CCHHHHHHHHHcCCCEEEEeH
Confidence 1111 11111222333321 1 46788 466666778899999999885
No 379
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=71.74 E-value=54 Score=34.07 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCeE-EeecCCC---HHHHHHhhhcCcccccceE--EecCCChhhHHHHHHHHHhCCCceEEEeeccCC-
Q psy3862 70 FEMAKHLAKHGLFT-TIHKYYT---LEEWKAFAVQNPDVIKHVA--VSSGISAKDLAGLKEILAALPEIEYICLDVANG- 142 (671)
Q Consensus 70 ~~lA~Ala~~gglg-vIh~n~~---~Eeq~~~i~~~p~~~~~~~--v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G- 142 (671)
.+....++++|.-- ++|.-.+ +....+.+++.- ..++ ++++++. +.+..++....-+.+.+++..++
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G---~kaGlalnP~T~~---~~l~~~l~~vD~VLvMsV~PGf~G 145 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAG---MKVGLVLNPETPV---ESIKYYIHLLDKITVMTVDPGFAG 145 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcC---CCEEEEeCCCCCH---HHHHHHHHhcCEEEEEEEcCCCcc
Confidence 45666788887553 5886522 333344444321 1233 3444444 44445554322233445554332
Q ss_pred --CChHHHHHHHHHHHhC----CCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 143 --YTQTFVDFVRRIREMY----PKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 143 --~~~~~~~~ik~lr~~~----P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
......++++++|+.. ....+.+=...+.+.+..+.+||||++|+++
T Consensus 146 Q~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 146 QPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred hhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 2355666777766432 2222322233568899999999999999853
No 380
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.73 E-value=68 Score=32.67 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHH----HHHHCCCcEEEE
Q psy3862 122 LKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVE----ELILSGADVIKV 187 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~----~Li~AGaD~IvV 187 (671)
++.+.++ +++.|-+- .........+.++++.+..|...+.+-.-...+..+ .+.++|+|.+.+
T Consensus 20 ~~~L~~~--Gv~~iEvg-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 20 AKALDEA--GVDYIEVG-FPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp HHHHHHH--TTSEEEEE-HCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHh--CCCEEEEc-ccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 3445555 66655443 122345566667776655444444333334443333 444588888844
No 381
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=71.72 E-value=44 Score=36.63 Aligned_cols=138 Identities=22% Similarity=0.295 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
..+.+|-.+ +.+.+-+... ...-.+.++.+++.. +.++++--..+...+....++|+|.+.|
T Consensus 40 ~QI~~L~~a--G~dIVRvtv~---~~e~A~A~~~Ik~~~-~vPLVaDiHf~~rla~~~~~~g~~k~RI------------ 101 (361)
T COG0821 40 AQIKALERA--GCDIVRVTVP---DMEAAEALKEIKQRL-NVPLVADIHFDYRLALEAAECGVDKVRI------------ 101 (361)
T ss_pred HHHHHHHHc--CCCEEEEecC---CHHHHHHHHHHHHhC-CCCEEEEeeccHHHHHHhhhcCcceEEE------------
Confidence 455566666 6666544322 244456667776654 2346665456788888899999999966
Q ss_pred cccCCcchhhhhccccCCccccccHHHHHHHHHcCCC---EEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862 200 KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGAD---VIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG 276 (671)
Q Consensus 200 ~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAd---gvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~ 276 (671)
-=|||+..+..+.++++--+ .+|+|+..||.- -|...-.|.|...|+.|.|-.--
T Consensus 102 -----------------NPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLe-k~~~~ky~~pt~ealveSAl~~a---- 159 (361)
T COG0821 102 -----------------NPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLE-KRLLEKYGGPTPEALVESALEHA---- 159 (361)
T ss_pred -----------------CCcccCcHHHHHHHHHHHHHcCCCEEEecccCchh-HHHHHHhcCCCHHHHHHHHHHHH----
Confidence 24889888888888875444 689999999974 34445556888888887763211
Q ss_pred cchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862 277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK 310 (671)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~ 310 (671)
+.-..|+|+|+.|-=|-|++.
T Consensus 160 -------------~~~e~l~f~~i~iS~K~Sdv~ 180 (361)
T COG0821 160 -------------ELLEELGFDDIKVSVKASDVQ 180 (361)
T ss_pred -------------HHHHHCCCCcEEEEEEcCCHH
Confidence 123467888888877766654
No 382
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=71.62 E-value=13 Score=38.41 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=40.7
Q ss_pred HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 125 ILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 125 l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
++...-+...+-++ .-|.. .-.+.++++++.. .....++|.+.+.|+++.+.++|||.|++.+
T Consensus 142 ~aae~~g~~ivyLe-~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 142 LAAEYLGMPIVYLE-YSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred HHHHHcCCeEEEeC-CCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 33333355667777 32322 2345566665543 2224566788999999999999999999843
No 383
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=71.43 E-value=34 Score=36.15 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=43.4
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-cc--CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CI--PQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~--p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
-+.+.+.++.++++|+++|-|..-.=+.- ++ +...+..+.+++. .+ ...+||-|.+.++.+..+|+||+.||
T Consensus 164 EVh~~~El~~al~~~a~iiGINnRdL~tf--~v-d~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 164 EVHNEEELERALEAGADIIGINNRDLKTF--EV-DLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp EESSHHHHHHHHHTT-SEEEEESBCTTTC--CB-HTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred EECCHHHHHHHHHcCCCEEEEeCccccCc--cc-ChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 56889999999999999995532111100 00 0000111222221 11 16999999999999999999999999
No 384
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=71.18 E-value=1.4e+02 Score=32.94 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHH---HhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIR---EMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr---~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~ 195 (671)
.+.+..++.. ++..+.+-.-+.......+..+.++ +.|- ..++. | ++.+.+.+.|+|-|=+....
T Consensus 160 l~~l~~al~~--Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~-~~lII-N----D~vdlAl~~~aDGVHLgq~d---- 227 (347)
T PRK02615 160 LEVVEAALKG--GVTLVQYRDKTADDRQRLEEAKKLKELCHRYG-ALFIV-N----DRVDIALAVDADGVHLGQED---- 227 (347)
T ss_pred HHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CeEEE-e----ChHHHHHHcCCCEEEeChhh----
Confidence 4567777777 6777777644333334445445443 2332 22222 2 45666678899988331110
Q ss_pred EEEecccCCcchhhhhcc-ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 196 TTRLKNKTSDFFLIQFYS-CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 196 ~t~v~~~~~~~~~i~~i~-~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.|.....++.. ...++..+-+.+.+..+...|||-|-+|
T Consensus 228 -------l~~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lG 267 (347)
T PRK02615 228 -------LPLAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVG 267 (347)
T ss_pred -------cCHHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 01000011110 0014556668889999999999976444
No 385
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=71.00 E-value=19 Score=37.25 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=39.0
Q ss_pred CceEEEeeccCCCChHH-HHHHHHHHHhCCCce-EEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 131 EIEYICLDVANGYTQTF-VDFVRRIREMYPKHV-IIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~-~~~ik~lr~~~P~~~-li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+-.++.++-.-|..... .+.++++++..+... .++|.+.+.++++.+.++|||.|++.+
T Consensus 149 g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 149 GMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred CCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 45677777544432222 344555555442333 467789999999999999999998843
No 386
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.99 E-value=15 Score=40.26 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.++.|.++|+|+|-+.++.-+....... ....+..+.++ .+| ..|++-|.+.+..+++.|||.|-+|
T Consensus 239 ~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~--~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~g 313 (353)
T cd04735 239 ALVDKLADKGLDYLHISLWDFDRKSRRGR--DDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIG 313 (353)
T ss_pred HHHHHHHHcCCCEEEeccCccccccccCC--cchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHh
Confidence 55678889999999885432111000000 00111112221 346 6899999999999999999998555
No 387
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=70.83 E-value=54 Score=34.15 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=62.0
Q ss_pred ceEEEEEeccHHHHHHHHHCCCcEEEECc-----CCCce---EEE--Eecc---cCCcchhhhhccccCC-cccc-ccHH
Q psy3862 161 HVIIAGNVVTGEMVEELILSGADVIKVGI-----GPGSV---CTT--RLKN---KTSDFFLIQFYSCIPQ-AGNV-VTGE 225 (671)
Q Consensus 161 ~~li~g~v~t~e~a~~Li~AGaD~IvVdg-----a~G~~---~~t--~v~~---~~~~~~~i~~i~~~p~-aGnV-~t~~ 225 (671)
..+++-++.+.--|+.+.++|.|++-+.+ ++|+. .++ ++.. ..-+-..++++.+.|. -|+. ...+
T Consensus 9 ~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~ 88 (243)
T cd00377 9 GPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVAR 88 (243)
T ss_pred CcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHH
Confidence 35667778888899999999999999877 33321 000 0000 0000001122223332 2232 2456
Q ss_pred HHHHHHHcCCCEEEE--cccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862 226 MVEELILSGADVIKV--GIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272 (671)
Q Consensus 226 ~a~~li~aGAdgvkV--G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~ 272 (671)
.++.++++||+||++ +..|.--|+|.+..-+-.-.....++++..+.
T Consensus 89 ~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~ 137 (243)
T cd00377 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDAR 137 (243)
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHH
Confidence 678888999999999 55555556665444333334445555554443
No 388
>PRK13753 dihydropteroate synthase; Provisional
Probab=70.82 E-value=8.3 Score=41.21 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEE
Q psy3862 396 AKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVM 466 (671)
Q Consensus 396 ~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~ 466 (671)
..+++.|||+|-|.+-+..-....+....++++..|.++.+++....+-+ --...++++ ++++|||.|.
T Consensus 32 ~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISI--DT~~~~va~~al~aGadiIN 101 (279)
T PRK13753 32 IEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSI--DSFQPETQRYALKRGVGYLN 101 (279)
T ss_pred HHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEE--ECCCHHHHHHHHHcCCCEEE
Confidence 45688999999998644322222333344555566777666654211211 123455666 6899999764
No 389
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=70.73 E-value=30 Score=42.04 Aligned_cols=108 Identities=24% Similarity=0.410 Sum_probs=64.8
Q ss_pred CceEEEeeccCCCC------------------------hHHHHHHHHHHHhC----CCceEEEEE-----ecc----HHH
Q psy3862 131 EIEYICLDVANGYT------------------------QTFVDFVRRIREMY----PKHVIIAGN-----VVT----GEM 173 (671)
Q Consensus 131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~----P~~~li~g~-----v~t----~e~ 173 (671)
+.|.|-++.+||+. +...+.++.+|+.. |...++-.. ..+ .+.
T Consensus 564 GfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~ 643 (765)
T PRK08255 564 GFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEI 643 (765)
T ss_pred CCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHH
Confidence 78888888887751 22345566666643 444444421 112 356
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhh---cc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQF---YS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~---i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
++.|.++|+|.|.+-++. +. ......++..++.++ ++ .+| ..|++-|.+.+..+++.| ||.|-+|
T Consensus 644 ~~~l~~~g~d~i~vs~g~-~~--~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 644 ARAFKAAGADLIDVSSGQ-VS--KDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred HHHHHhcCCcEEEeCCCC-CC--cCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 788889999999885321 11 000111112222233 22 256 699999999999999866 9998777
No 390
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=70.60 E-value=18 Score=39.58 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=64.4
Q ss_pred CceEEEeeccCCCC------------------------hHHHHHHHHHHHh--CCCceEEEEE-----ecc----HHHHH
Q psy3862 131 EIEYICLDVANGYT------------------------QTFVDFVRRIREM--YPKHVIIAGN-----VVT----GEMVE 175 (671)
Q Consensus 131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~--~P~~~li~g~-----v~t----~e~a~ 175 (671)
+.|.|-+..+||+. +-..+.++.+|+. +|...++-.. ..+ .+-++
T Consensus 155 GfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~ 234 (337)
T PRK13523 155 GFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAK 234 (337)
T ss_pred CCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHH
Confidence 77888888787651 1133455566654 5655555432 113 25567
Q ss_pred HHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 176 ELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 176 ~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
.|.++|+|.|.+.++ +..... .+..+ ..+..+.++ .+| ..|++.|.+.+.++|+.| ||.|-+|
T Consensus 235 ~l~~~gvD~i~vs~g--~~~~~~-~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 235 WMKEQGVDLIDVSSG--AVVPAR-IDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIG 305 (337)
T ss_pred HHHHcCCCEEEeCCC--CCCCCC-CCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhh
Confidence 888899999988543 210000 01011 122333332 356 689999999999999987 9998555
No 391
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=70.45 E-value=94 Score=31.62 Aligned_cols=156 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHcC--CeEEee-----cCCCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862 68 GTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA 140 (671)
Q Consensus 68 t~~~lA~Ala~~g--glgvIh-----~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a 140 (671)
+..+-|.+.++.| -+|+|. |..++|+..+.....|...+.+++....+ .+.+.++.+.. +.+++-+
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~---~~~i~~~~~~~-~~d~vQL--- 81 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPD---LTTIEHILSNT-SINTIQL--- 81 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCC---HHHHHHHHHhC-CCCEEEE---
Confidence 4455555555665 568874 33566654444433343344565544333 44555555431 3455544
Q ss_pred CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHH--HHCCCcEEEECcC----CCceEEEEecccCCcchhhhhccc
Q psy3862 141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEEL--ILSGADVIKVGIG----PGSVCTTRLKNKTSDFFLIQFYSC 214 (671)
Q Consensus 141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~L--i~AGaD~IvVdga----~G~~~~t~v~~~~~~~~~i~~i~~ 214 (671)
||.. -.+.++++++.+|...++-....+.+....+ ....+|.+.+|+. +|+..+--. .++.-+..
T Consensus 82 HG~e--~~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw-------~~~~~~~~ 152 (207)
T PRK13958 82 HGTE--SIDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDW-------TILKHIKD 152 (207)
T ss_pred CCCC--CHHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeCh-------HHhhhccC
Confidence 3431 1445666665566544443322222222111 1234899999973 333321100 00000011
Q ss_pred cC--CccccccHHHHHHHH--HcCCCEEEE
Q psy3862 215 IP--QAGNVVTGEMVEELI--LSGADVIKV 240 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li--~aGAdgvkV 240 (671)
.| .|||+. .+-+..++ ..+..||=|
T Consensus 153 ~p~iLAGGL~-peNV~~a~~~~~~p~gVDv 181 (207)
T PRK13958 153 IPYLIAGGIN-SENIQTVEQLKLSHQGYDI 181 (207)
T ss_pred CCEEEECCCC-HHHHHHHHhcCCCCCEEEc
Confidence 23 699984 45455555 357777655
No 392
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=70.18 E-value=9.5 Score=41.78 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=18.7
Q ss_pred eeccccCchhHHHHHHcCCcEEEECc
Q psy3862 444 VDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 444 i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
-.||+....++.+.+.+|||.|+||.
T Consensus 294 g~GGI~s~eda~e~l~aGAd~V~v~~ 319 (344)
T PRK05286 294 GVGGIDSAEDAYEKIRAGASLVQIYS 319 (344)
T ss_pred EECCCCCHHHHHHHHHcCCCHHHHHH
Confidence 36775444455557789999999885
No 393
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.11 E-value=25 Score=37.52 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=77.1
Q ss_pred cceEecCCCCCCCHHHHHHHHHcCCeEEEc---cCCCHHHHHHHHhcCccccc--------ceee------------ecc
Q psy3862 333 VPIIAANMDTVGTFEMAKHLAKHGLFTTIH---KYYTLEEWKAFAVQNPDVIK--------HVAD------------GGC 389 (671)
Q Consensus 333 iPiIaa~MDtV~~~~mA~~la~~Gglgvih---r~~~~e~~~~~v~~~~~~~~--------~v~~------------~~~ 389 (671)
+||.- ..|-..+++......+. |+..+. ++.+.+|..+..+++.+..+ ++.. ...
T Consensus 75 vpv~l-hlDH~~~~e~i~~ai~~-Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~ 152 (282)
T TIGR01859 75 VPVAL-HLDHGSSYESCIKAIKA-GFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAEL 152 (282)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHc-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccccc
Confidence 77654 55877788866665554 566666 79999998888776533210 1111 113
Q ss_pred cChhhHHHHHH-cCCcEEEEc-ccccccccccccccccccccccccccccccc--Cceeec--cccCchhHHHHHHcCCc
Q psy3862 390 TSPGDVAKAMG-AGADFVMLG-GMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDG--GCTSPGDVAKAMGAGAD 463 (671)
Q Consensus 390 ~~~~~~~~l~~-aG~d~i~id-~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~g--G~v~t~~~a~~l~aGAd 463 (671)
+++++..+.++ .|+|+|.+. |+.||--.. .....+..|..+++.+ +=+..| | +...++.+++++|++
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~------~~~l~~e~L~~i~~~~~iPlv~hGgSG-i~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKG------EPGLDFERLKEIKELTNIPLVLHGASG-IPEEQIKKAIKLGIA 225 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC------CCccCHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHcCCC
Confidence 46688888876 899999974 566653211 1122233344444433 225667 5 355666778899999
Q ss_pred EEEEC
Q psy3862 464 FVMLG 468 (671)
Q Consensus 464 ~V~vG 468 (671)
.|=|+
T Consensus 226 kiNv~ 230 (282)
T TIGR01859 226 KINID 230 (282)
T ss_pred EEEEC
Confidence 88665
No 394
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=70.11 E-value=13 Score=38.70 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=37.6
Q ss_pred CceEEEeeccCCCChHH-HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 131 EIEYICLDVANGYTQTF-VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~~~-~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
+-.++.+.-..|.+.+. .+++++.++.- ..+++|.+.++|.|+++.+||||.||+
T Consensus 164 g~~~~YlEagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVt 219 (240)
T COG1646 164 GMPVVYLEAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVT 219 (240)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 55677777655554433 34555443322 245666889999999999999999987
No 395
>PRK14057 epimerase; Provisional
Probab=69.90 E-value=17 Score=38.40 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCe-EEeecCC--CHHHHHHhhhcCcc----ccc--ceE--EecCCChhhHHHHHHHHHhCCCceEEEee
Q psy3862 70 FEMAKHLAKHGLF-TTIHKYY--TLEEWKAFAVQNPD----VIK--HVA--VSSGISAKDLAGLKEILAALPEIEYICLD 138 (671)
Q Consensus 70 ~~lA~Ala~~ggl-gvIh~n~--~~Eeq~~~i~~~p~----~~~--~~~--v~~G~~~~d~~rl~~l~~a~~~~d~Ivld 138 (671)
.+....++++|.= =++|.-. .+.+..+.+++... ... .++ ++++++.+ .+..++....-+.+.+++
T Consensus 88 ~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e---~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD---VIIPILSDVEVIQLLAVN 164 (254)
T ss_pred HHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH---HHHHHHHhCCEEEEEEEC
Confidence 5566778888754 4588432 13333444543311 000 223 34555544 444455432223334555
Q ss_pred ccCCC---ChHHHHHHHHHHHhC----CCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 139 VANGY---TQTFVDFVRRIREMY----PKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 139 ~a~G~---~~~~~~~ik~lr~~~----P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
..++- .....++++++++.. ....+.+=...+.+.+..+.+||||.+|+++
T Consensus 165 PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 165 PGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred CCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 44332 355666777665422 2222322233577899999999999999854
No 396
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=69.83 E-value=55 Score=34.15 Aligned_cols=132 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred cC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeecc
Q psy3862 215 IP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIIND 292 (671)
Q Consensus 215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 292 (671)
+| ++|||-+.+.++.++++|||-|-+| -..+-.|.+-. +.++..+-.|+.
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvig-----------T~a~~~p~~~~-----~~~~~~g~~ivv------------ 126 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGG-----------TAALENPWWAA-----AVIRYGGDIVAV------------ 126 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEEC-----------chhhCCHHHHH-----HHHHHccccEEE------------
Q ss_pred ccCCCc----eeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc------
Q psy3862 293 IKLDFK----DVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH------ 362 (671)
Q Consensus 293 ~~l~fd----DVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih------ 362 (671)
++|++ ...+.++-.+... ....+.+..+.++|.=.+|.
T Consensus 127 -slD~k~~g~~~~v~~~Gw~~~~-------------------------------~~~~~~~~~~~~~g~~~ii~tdI~~d 174 (243)
T TIGR01919 127 -GLDVLEDGEWHTLGNRGWSDGG-------------------------------GDLEVLERLLDSGGCSRVVVTDSKKD 174 (243)
T ss_pred -EEEEecCCceEEEECCCeecCC-------------------------------CcHHHHHHHHHhCCCCEEEEEecCCc
Q ss_pred ---cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHc---CCcEEEE
Q psy3862 363 ---KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGA---GADFVML 408 (671)
Q Consensus 363 ---r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~a---G~d~i~i 408 (671)
+-.+.| +.+.+++..+ ++.+++.|..+.+|+.++.+. |+|-..+
T Consensus 175 Gt~~G~d~~-l~~~l~~~~~-~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 175 GLSGGPNEL-LLEVVAARTD-AIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred ccCCCcCHH-HHHHHHhhCC-CCEEEECCcCCHHHHHHHHhhccCCeeEEEE
No 397
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=69.00 E-value=60 Score=34.07 Aligned_cols=169 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccc---------------------cCCccccc--cHHHHH
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC---------------------IPQAGNVV--TGEMVE 228 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~---------------------~p~aGnV~--t~~~a~ 228 (671)
.+|.+|.++|+|+|.+ .++.-.+|.+. +|++=||- ++..+.
T Consensus 38 ~dA~~leegG~Daviv----------------EN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~ 101 (263)
T COG0434 38 RDAAALEEGGVDAVIV----------------ENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAAL 101 (263)
T ss_pred HHHHHHHhCCCcEEEE----------------eccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHH
Q ss_pred HHH-HcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCC
Q psy3862 229 ELI-LSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRS 307 (671)
Q Consensus 229 ~li-~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rs 307 (671)
+.- ..||+-|||-+=.|..-|-+-+.- .-..|.++..+.++
T Consensus 102 ~IA~a~gA~FIRVN~~tg~~~tdqGiie------g~A~e~~r~r~~L~-------------------------------- 143 (263)
T COG0434 102 AIAYAVGADFIRVNVLTGAYATDQGIIE------GNAAELARYRARLG-------------------------------- 143 (263)
T ss_pred HHHHhcCCCEEEEEeeeceEecccceec------chHHHHHHHHHhcc--------------------------------
Q ss_pred ccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeee
Q psy3862 308 TLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADG 387 (671)
Q Consensus 308 t~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~ 387 (671)
++|.+--.+.-+| ..++..|=+.
T Consensus 144 -----~~v~vlADv~VKH--a~~l~~~~~~-------------------------------------------------- 166 (263)
T COG0434 144 -----SRVKVLADVHVKH--AVHLGNRSLE-------------------------------------------------- 166 (263)
T ss_pred -----CCcEEEeecchhc--ccccCCcCHH--------------------------------------------------
Q ss_pred cccChhhHHHHHHcC-CcEEEEccccccccccccccccccccccccccccccccCc-eeeccccCchhHHHHHHcCCcEE
Q psy3862 388 GCTSPGDVAKAMGAG-ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFV 465 (671)
Q Consensus 388 ~~~~~~~~~~l~~aG-~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V 465 (671)
+-....++-| +|.+++-|...||..+.-++ ..+++..+- +++|--+...++.+.++. ||++
T Consensus 167 -----~~v~dtver~~aDaVI~tG~~TG~~~d~~el-----------~~a~~~~~~pvlvGSGv~~eN~~~~l~~-adG~ 229 (263)
T COG0434 167 -----EAVKDTVERGLADAVIVTGSRTGSPPDLEEL-----------KLAKEAVDTPVLVGSGVNPENIEELLKI-ADGV 229 (263)
T ss_pred -----HHHHHHHHccCCCEEEEecccCCCCCCHHHH-----------HHHHhccCCCEEEecCCCHHHHHHHHHH-cCce
Q ss_pred EEC
Q psy3862 466 MLG 468 (671)
Q Consensus 466 ~vG 468 (671)
+||
T Consensus 230 Ivg 232 (263)
T COG0434 230 IVG 232 (263)
T ss_pred EEE
No 398
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=68.01 E-value=62 Score=32.98 Aligned_cols=90 Identities=24% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEECcCCCce
Q psy3862 121 GLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKVGIGPGSV 194 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvVdga~G~~ 194 (671)
.++.+.++ +++.+.+....|. |..+.+.++.+++.+|...+-.-.-.+ ...+...+++|||.|.....+
T Consensus 142 ~~~~~~~~--g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~G--- 216 (237)
T PF00682_consen 142 LAEALAEA--GADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGG--- 216 (237)
T ss_dssp HHHHHHHH--T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGG---
T ss_pred HHHHHHHc--CCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCcc---
Confidence 34455555 6677777666665 577888999999999864332222222 356667889999998442211
Q ss_pred EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcC
Q psy3862 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSG 234 (671)
Q Consensus 195 ~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aG 234 (671)
+.. -+||..+-+-+.+|-.+|
T Consensus 217 ----lG~---------------~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 217 ----LGE---------------RAGNAPLEELVAALERMG 237 (237)
T ss_dssp ----GSS---------------TTSB-BHHHHHHHHHHT-
T ss_pred ----CCC---------------CCCCccHHHHHHHHhhcC
Confidence 000 378888877777776654
No 399
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.98 E-value=58 Score=38.45 Aligned_cols=190 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECc-CCCceEEEEecccCCcchhhhhc-cccC--------CccccccHHH---------HHHHHH
Q psy3862 172 EMVEELILSGADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFY-SCIP--------QAGNVVTGEM---------VEELIL 232 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i-~~~p--------~aGnV~t~~~---------a~~li~ 232 (671)
+-++.|.++|++.|-+.| +.-..|...+.+. +...+..+ +..| -+-|+.-++. .+.+.+
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~--~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDACIRFLNED--PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHcCCCEEEecCCcccccccccCCCC--HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred cCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCC
Q psy3862 233 SGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSR 312 (671)
Q Consensus 233 aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr 312 (671)
+|.|.+|+.....-+ .-+..+.++|++.|.++..
T Consensus 103 ~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~-------------------------------- 136 (582)
T TIGR01108 103 NGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQG-------------------------------- 136 (582)
T ss_pred CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEE--------------------------------
Q ss_pred CcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccCh
Q psy3862 313 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSP 392 (671)
Q Consensus 313 ~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~ 392 (671)
-|+-..+...+.+.-..++
T Consensus 137 ----------------------~i~~t~~p~~~~~~~~~~~--------------------------------------- 155 (582)
T TIGR01108 137 ----------------------TISYTTSPVHTLETYLDLA--------------------------------------- 155 (582)
T ss_pred ----------------------EEEeccCCCCCHHHHHHHH---------------------------------------
Q ss_pred hhHHHHHHcCCcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccc
Q psy3862 393 GDVAKAMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMF 471 (671)
Q Consensus 393 ~~~~~l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g 471 (671)
.++.++|+|.|+|-+++ ...-...-++++.++..+| +. -+++-|- +-|. ...+.-.++++|||.|=..+
T Consensus 156 ---~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~p--i~~H~Hn-t~Gl-a~An~laAveaGa~~vd~ai-- 225 (582)
T TIGR01108 156 ---EELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LP--VHLHSHA-TTGM-AEMALLKAIEAGADGIDTAI-- 225 (582)
T ss_pred ---HHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-Cc--eEEEecC-CCCc-HHHHHHHHHHhCCCEEEecc--
Q ss_pred cCCccCCCc
Q psy3862 472 AGHDQSGGE 480 (671)
Q Consensus 472 ~G~s~ctt~ 480 (671)
.|-+.+++.
T Consensus 226 ~GlG~~tGn 234 (582)
T TIGR01108 226 SSMSGGTSH 234 (582)
T ss_pred ccccccccC
No 400
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=67.83 E-value=24 Score=36.11 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc-CCcchhhh----hcc--ccC-
Q psy3862 145 QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK-TSDFFLIQ----FYS--CIP- 216 (671)
Q Consensus 145 ~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~-~~~~~~i~----~i~--~~p- 216 (671)
..-.+.++.+++. ...+-++.+.+.+++....++|+++|-.= ..++.+. .+.+.++. ++. .+|
T Consensus 88 ~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~-------vgR~~~~g~dg~~~i~~i~~~~~~~~~~t 158 (211)
T cd00956 88 EDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPF-------VGRIDDLGGDGMELIREIRTIFDNYGFDT 158 (211)
T ss_pred HhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEe-------cChHhhcCCCHHHHHHHHHHHHHHcCCCc
Confidence 3567778877654 23355668899999999999999997221 1111111 11121111 111 235
Q ss_pred --CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 217 --QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 217 --~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++-+...+..++.+|||.+++.
T Consensus 159 kil~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 159 KILAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred eEEecccCCHHHHHHHHHcCCCEEEeC
Confidence 7889999999999999999999987
No 401
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=67.72 E-value=24 Score=38.64 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCcEEEECcC-CCceEEEEecccCCc---chhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIG-PGSVCTTRLKNKTSD---FFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga-~G~~~~t~v~~~~~~---~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
+.++.|.++|+|+|.+..+ +.... .......+. +.....++ .+| ..|++-|.+.+..+++.| +|.|.+|
T Consensus 228 ~i~~~Le~~G~d~i~vs~g~~e~~~-~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 228 ALAKALEAAGADILNTGIGWHEARV-PTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMA 306 (353)
T ss_pred HHHHHHHHcCCCEEEeCCCcCCCCC-ccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhh
Confidence 5667888899999988432 11111 000000111 11122222 356 689999999999999976 9999777
No 402
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=67.68 E-value=33 Score=35.38 Aligned_cols=127 Identities=18% Similarity=0.105 Sum_probs=59.9
Q ss_pred cceEecCCCCCCCHHHHHHHHHcCC-eEEEccCCC---HHHHHHHHhcCcccccceeeecc--cChhhHHHHHHc-CCcE
Q psy3862 333 VPIIAANMDTVGTFEMAKHLAKHGL-FTTIHKYYT---LEEWKAFAVQNPDVIKHVADGGC--TSPGDVAKAMGA-GADF 405 (671)
Q Consensus 333 iPiIaa~MDtV~~~~mA~~la~~Gg-lgvihr~~~---~e~~~~~v~~~~~~~~~v~~~~~--~~~~~~~~l~~a-G~d~ 405 (671)
+|+=..=| +-+.......+++.|. +-.+|--.+ +++..+.+++.- ..++.+-. +..+++..+++. .+|.
T Consensus 66 ~~lDvHLm-~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G---~~~gval~p~t~~e~l~~~l~~~~vD~ 141 (228)
T PTZ00170 66 TFLDCHLM-VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG---MKVGVAIKPKTPVEVLFPLIDTDLVDM 141 (228)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC---CeEEEEECCCCCHHHHHHHHccchhhh
Confidence 44444444 2223334456677664 234453222 555555555432 11222222 234666666543 3777
Q ss_pred EEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 406 VMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 406 i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+.+=.+-.|....... ...+..+..++++++. -|+|| +...++..+..+|||++.||.
T Consensus 142 Vl~m~v~pG~~gq~~~-----~~~~~ki~~~~~~~~~~~I~VdGG-I~~~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 142 VLVMTVEPGFGGQSFM-----HDMMPKVRELRKRYPHLNIQVDGG-INLETIDIAADAGANVIVAGS 202 (228)
T ss_pred HHhhhcccCCCCcEec-----HHHHHHHHHHHHhcccCeEEECCC-CCHHHHHHHHHcCCCEEEEch
Confidence 6543222354321110 0000112223344332 35788 455666667899999999985
No 403
>PRK00915 2-isopropylmalate synthase; Validated
Probab=67.67 E-value=17 Score=42.14 Aligned_cols=192 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHH----HcCCCEEEEcc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELI----LSGADVIKVGI 242 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li----~aGAdgvkVG~ 242 (671)
+-++.|.++|+|.|-+ |.++.+ .++++.+..++..+ .+-.-+..+....++ ++|++.|.+-+
T Consensus 30 ~ia~~L~~~Gv~~IE~-G~p~~s~~d~~~v~~i~~~~~~~~i--------~a~~r~~~~did~a~~a~~~~~~~~v~i~~ 100 (513)
T PRK00915 30 QIAKQLERLGVDVIEA-GFPASSPGDFEAVKRIARTVKNSTV--------CGLARAVKKDIDAAAEALKPAEAPRIHTFI 100 (513)
T ss_pred HHHHHHHHcCCCEEEE-cCCCCChHHHHHHHHHHhhCCCCEE--------EEEccCCHHHHHHHHHHhhcCCCCEEEEEE
Q ss_pred cCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeee
Q psy3862 243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFT 322 (671)
Q Consensus 243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~ 322 (671)
.......+...-----=-+.-+.++.+.|+++|..+.-
T Consensus 101 ~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f------------------------------------------ 138 (513)
T PRK00915 101 ATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEF------------------------------------------ 138 (513)
T ss_pred CCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE------------------------------------------
Q ss_pred eccCCceeeCcceEecCCCCC-CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHc
Q psy3862 323 FRNSGKTYQGVPIIAANMDTV-GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGA 401 (671)
Q Consensus 323 ~~~s~~~~~~iPiIaa~MDtV-~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~a 401 (671)
+++|+. ++++.+..+. ..+.++
T Consensus 139 ---------------~~ed~~r~d~~~l~~~~------------------------------------------~~~~~~ 161 (513)
T PRK00915 139 ---------------SAEDATRTDLDFLCRVV------------------------------------------EAAIDA 161 (513)
T ss_pred ---------------EeCCCCCCCHHHHHHHH------------------------------------------HHHHHc
Q ss_pred CCcEEEEcccc-ccccccccccccccccccccccccc-cccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 402 GADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMN-SYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 402 G~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
|+|.|++-+|. ...-...-++++.++..+|..+.+. ++..|- +-|. .+.+.-.++++||+.|-.-+.|=|
T Consensus 162 Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HN-D~Gl-AvANslaAv~aGa~~Vd~Tv~GlG 233 (513)
T PRK00915 162 GATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHN-DLGL-AVANSLAAVEAGARQVECTINGIG 233 (513)
T ss_pred CCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecC-CCCH-HHHHHHHHHHhCCCEEEEEeeccc
No 404
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=67.49 E-value=60 Score=34.48 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHH----HHHHHHHHHhC-CCceEE-------EE--EeccH-
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTF----VDFVRRIREMY-PKHVII-------AG--NVVTG- 171 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~----~~~ik~lr~~~-P~~~li-------~g--~v~t~- 171 (671)
++.++=|+. . +.++.+++. +++-+++.++ .-.- .++++++-+.| |...++ -| .+.+.
T Consensus 85 ~vqvGGGIR--~-e~i~~~l~~--Ga~rViigT~---Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~G 156 (262)
T PLN02446 85 GLQVGGGVN--S-ENAMSYLDA--GASHVIVTSY---VFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDR 156 (262)
T ss_pred CEEEeCCcc--H-HHHHHHHHc--CCCEEEEchH---HHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECC
Q ss_pred ----------HHHHHHHHCCCcEEEECcCCCceEEEEecccC----Ccchhhhhcc---ccC--CccccccHHHHHHHHH
Q psy3862 172 ----------EMVEELILSGADVIKVGIGPGSVCTTRLKNKT----SDFFLIQFYS---CIP--QAGNVVTGEMVEELIL 232 (671)
Q Consensus 172 ----------e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~----~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~ 232 (671)
+-+..+.+.|++-| ..|.+.+.- +++.++..+. .+| ++|||.+-+-.+.|..
T Consensus 157 W~~~t~~~~~e~~~~~~~~g~~ei---------i~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~ 227 (262)
T PLN02446 157 WQKFSDLAVDEETLEFLAAYCDEF---------LVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKV 227 (262)
T ss_pred CcccCCCCHHHHHHHHHHhCCCEE---------EEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH
Q ss_pred c--CCCEEEEc
Q psy3862 233 S--GADVIKVG 241 (671)
Q Consensus 233 a--GAdgvkVG 241 (671)
+ |..|+-||
T Consensus 228 ~g~g~~gvIvG 238 (262)
T PLN02446 228 AGGGRVDVTVG 238 (262)
T ss_pred cCCCCEEEEEE
No 405
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=67.35 E-value=51 Score=35.25 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=45.3
Q ss_pred ccHHHHHHHHH-CCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--Ccc--ccccHHHHHHHHHcCCCEE
Q psy3862 169 VTGEMVEELIL-SGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAG--NVVTGEMVEELILSGADVI 238 (671)
Q Consensus 169 ~t~e~a~~Li~-AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aG--nV~t~~~a~~li~aGAdgv 238 (671)
.++|.++..++ .|+|.|.+.. .||.. +.. ..-++..++.+. .+| .=| |+ +-+..+.++++|++++
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~--~~~--~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKY--KGE--PGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIKLGIAKI 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc--CCC--CccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 36788888887 8999999654 45522 111 111344444443 367 455 44 6678999999999999
Q ss_pred EEc
Q psy3862 239 KVG 241 (671)
Q Consensus 239 kVG 241 (671)
=|+
T Consensus 228 Nv~ 230 (282)
T TIGR01859 228 NID 230 (282)
T ss_pred EEC
Confidence 888
No 406
>KOG2335|consensus
Probab=67.31 E-value=24 Score=38.81 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=57.0
Q ss_pred HHHHcCCeEEEccCCCHHHHHHHHhcCccccc---ceeeecccChh---hHHH-HHHcCCcEEEEccccc---ccccccc
Q psy3862 351 HLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIK---HVADGGCTSPG---DVAK-AMGAGADFVMLGGMFA---GHDQSGG 420 (671)
Q Consensus 351 ~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~---~v~~~~~~~~~---~~~~-l~~aG~d~i~id~~a~---gh~~~~~ 420 (671)
..|+.||+|..=-. .+|=..+.|.++.+-+. .++.-.....+ |+.+ +.+||+++|.|-|-.. |+-...+
T Consensus 111 ~~a~~g~yGa~L~~-~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pa 189 (358)
T KOG2335|consen 111 KVAKRGGYGAFLMD-NPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPA 189 (358)
T ss_pred HHHhcCCccceecc-CHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCc
Confidence 46899999986532 33444444443322111 11111112222 2333 3679999999865331 2212222
Q ss_pred ccccccccccccccccccccCc--eeeccccCchhHHH-HHH-cCCcEEEECc
Q psy3862 421 ELTNIEYMFFPLVGDMNSYLGG--VVDGGCTSPGDVAK-AMG-AGADFVMLGG 469 (671)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~--~i~gG~v~t~~~a~-~l~-aGAd~V~vG~ 469 (671)
+ |..+..+|+-+++ ++.-|||.+.+=+. .+. +|||+||+|-
T Consensus 190 d--------~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 190 D--------WEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred C--------HHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecc
Confidence 2 2233334444443 55666666655554 454 9999999985
No 407
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=67.09 E-value=28 Score=37.96 Aligned_cols=65 Identities=26% Similarity=0.326 Sum_probs=42.2
Q ss_pred HHHH-HHcCCcEEEEcccc--cccc-ccccccccccccccccccccccccC--ceeeccccCchhHHHH-H-HcCCcEEE
Q psy3862 395 VAKA-MGAGADFVMLGGMF--AGHD-QSGGELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAKA-M-GAGADFVM 466 (671)
Q Consensus 395 ~~~l-~~aG~d~i~id~~a--~gh~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~~-l-~aGAd~V~ 466 (671)
+.+. -++|++.|.|.+-. .++. .--.+. +..+|+..+ .++.-|.|.+.+-++. + ..|+|+||
T Consensus 157 ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~----------I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVM 226 (323)
T COG0042 157 IARILEDAGADALTVHGRTRAQGYLGPADWDY----------IKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVM 226 (323)
T ss_pred HHHHHHhcCCCEEEEecccHHhcCCCccCHHH----------HHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEE
Confidence 5555 46799999998644 2332 222223 333444444 2667777888888885 4 68999999
Q ss_pred ECc
Q psy3862 467 LGG 469 (671)
Q Consensus 467 vG~ 469 (671)
+|.
T Consensus 227 igR 229 (323)
T COG0042 227 IGR 229 (323)
T ss_pred EcH
Confidence 996
No 408
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=66.72 E-value=7.2 Score=42.37 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=19.3
Q ss_pred eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 443 VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+..||+....++.+.+.+|||.|+||.
T Consensus 284 i~~GGI~t~~da~e~l~aGAd~V~vg~ 310 (327)
T cd04738 284 IGVGGISSGEDAYEKIRAGASLVQLYT 310 (327)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhccH
Confidence 346775444555557889999999985
No 409
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.61 E-value=24 Score=38.91 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=47.9
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG 234 (671)
.+++..+.+.+.+..+.+.|+|+|.+.--.- |..++..+ .+..+..+. .+| +-||| +.+.+..++++|
T Consensus 241 ~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~----T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~G 315 (347)
T PRK02615 241 KIIGRSTTNPEEMAKAIAEGADYIGVGPVFP----TPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAG 315 (347)
T ss_pred CEEEEecCCHHHHHHHHHcCCCEEEECCCcC----CCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4667777889999999999999997632111 11111111 122222221 256 67888 578888999999
Q ss_pred CCEEEEc
Q psy3862 235 ADVIKVG 241 (671)
Q Consensus 235 AdgvkVG 241 (671)
|+||=|+
T Consensus 316 a~gVAvi 322 (347)
T PRK02615 316 AKRVAVV 322 (347)
T ss_pred CcEEEEe
Confidence 9999655
No 410
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=66.23 E-value=21 Score=41.23 Aligned_cols=194 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCc---------chhhhhccccCCccccccHHHHHHHHHc----
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSD---------FFLIQFYSCIPQAGNVVTGEMVEELILS---- 233 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~---------~~~i~~i~~~p~aGnV~t~~~a~~li~a---- 233 (671)
+-++.|.++|+|.|-+.. +..+ .++.+.+..++ ..+ .+-+-+..+....++++
T Consensus 110 ~Ia~~L~~~GVd~IEvG~-Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i--------~a~~R~~~~dId~a~~a~~~a 180 (503)
T PLN03228 110 EIARQLAKLRVDIMEVGF-PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVI--------CGIARCKKRDIEAAWEALKYA 180 (503)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHhcccccccccccceEE--------eeecccCHhhHHHHHHhhccc
Q ss_pred CCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCC
Q psy3862 234 GADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRS 313 (671)
Q Consensus 234 GAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~ 313 (671)
|++.|-+-+...........-----=.+.-+.++.+.|+++|.+.+.
T Consensus 181 ~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~--------------------------------- 227 (503)
T PLN03228 181 KRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQ--------------------------------- 227 (503)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE---------------------------------
Q ss_pred cccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChh
Q psy3862 314 EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPG 393 (671)
Q Consensus 314 eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~ 393 (671)
.+...-+-++++....++
T Consensus 228 ----------------------f~~EDa~Rtd~efl~~~~---------------------------------------- 245 (503)
T PLN03228 228 ----------------------FGCEDGGRSDKEFLCKIL---------------------------------------- 245 (503)
T ss_pred ----------------------eccccccccCHHHHHHHH----------------------------------------
Q ss_pred hHHHHHHcCCcEEEEcccc-cccccccccccccccccccccc-ccccccCceeeccccCchhHHHHHHcCCcEEEECccc
Q psy3862 394 DVAKAMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVG-DMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMF 471 (671)
Q Consensus 394 ~~~~l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g 471 (671)
..+.++|+|.|++-++. ..+-....++++.++..+|... ..-++..|- +=| ..+.+.-.++.+||+.|-+-+.|
T Consensus 246 --~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HN-D~G-lAvANslaAi~aGa~~Vd~Tv~G 321 (503)
T PLN03228 246 --GEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHN-DLG-LATANTIAGICAGARQVEVTING 321 (503)
T ss_pred --HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccC-CcC-hHHHHHHHHHHhCCCEEEEeccc
Q ss_pred cC
Q psy3862 472 AG 473 (671)
Q Consensus 472 ~G 473 (671)
=|
T Consensus 322 iG 323 (503)
T PLN03228 322 IG 323 (503)
T ss_pred cc
No 411
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=65.99 E-value=16 Score=37.59 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHCCCcEEEECcCC-CceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 173 MVEELILSGADVIKVGIGP-GSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 173 ~a~~Li~AGaD~IvVdga~-G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
..+.+.+.|+-.|..|.+. |+. +-+++.++..+. .+| ++|||.+.+.++.|..+||||+-||
T Consensus 146 ~~~~~~~~g~~ii~tdI~~dGt~-------~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 146 VRDFLNSFDYGLIVLDIHSVGTM-------KGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred HHHHHHhcCCEEEEEECCccccC-------CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 3445556777677666633 421 124555544442 256 7999999999999999999999988
No 412
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=65.92 E-value=25 Score=36.57 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=37.9
Q ss_pred CceEEEeeccCCCCh-HHHHHHHHHHHhCCC-ceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 131 EIEYICLDVANGYTQ-TFVDFVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 131 ~~d~Ivld~a~G~~~-~~~~~ik~lr~~~P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+-..+.++...+... .-.+.++++++.... ...++|.+.+.+.++.++++|||.+++.+
T Consensus 154 g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 154 GMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 445566654433211 114556666554433 34566688999999999999999999843
No 413
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.55 E-value=20 Score=39.27 Aligned_cols=66 Identities=17% Similarity=0.351 Sum_probs=38.9
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccCCccccc-cHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIPQAGNVV-TGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p~aGnV~-t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
|.++.++|.+||+|.+.+..-.=.. ....+++.. .+|...-|= +++-|..+++.|+|.+|+- ||=
T Consensus 36 tv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~----------~iPlVADIHFd~~lAl~a~~~g~dkiRIN--PGN 103 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGT----------NVPLVADIHFDYRLAALAMAKGVAKVRIN--PGN 103 (346)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCC----------CCCEEEeeCCCcHHHHHHHHhccCeEEEC--CCC
Confidence 3467778889999999763311000 011111111 234333333 5889999999999999986 554
Q ss_pred c
Q psy3862 247 V 247 (671)
Q Consensus 247 ~ 247 (671)
+
T Consensus 104 i 104 (346)
T TIGR00612 104 I 104 (346)
T ss_pred C
Confidence 3
No 414
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=65.51 E-value=34 Score=34.91 Aligned_cols=113 Identities=21% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc----ccccccccc
Q psy3862 346 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF----AGHDQSGGE 421 (671)
Q Consensus 346 ~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a----~gh~~~~~~ 421 (671)
.+.|..|.+.++--+|-=-.+. +-.+-++++.+.--.+.+..+-+.++.....+||++++..- +- .|+ ...+
T Consensus 67 i~~a~~l~~~~~~~~iKIP~T~-~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~-vgR~~~~g~--dg~~ 142 (211)
T cd00956 67 VAEARKLASLGGNVVVKIPVTE-DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPF-VGRIDDLGG--DGME 142 (211)
T ss_pred HHHHHHHHHhCCCEEEEEcCcH-hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEe-cChHhhcCC--CHHH
Confidence 4556777776554333222222 22222222211001122333346677777788999997643 11 122 1112
Q ss_pred cccccccccccccccccc--cCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 422 LTNIEYMFFPLVGDMNSY--LGGVVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~--~~~~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
+++.+.. ..++| .-.++.++...+.++..++.+|||+|++.
T Consensus 143 ~i~~i~~------~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 143 LIREIRT------IFDNYGFDTKILAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHH------HHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeC
Confidence 1111111 11122 12377899999999999999999999997
No 415
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.20 E-value=1e+02 Score=32.82 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=60.7
Q ss_pred HHHHHHhCCCceEE-EeeccCCCChHHHHHHHHHHHhCCC-ceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862 122 LKEILAALPEIEYI-CLDVANGYTQTFVDFVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199 (671)
Q Consensus 122 l~~l~~a~~~~d~I-vld~a~G~~~~~~~~ik~lr~~~P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v 199 (671)
++..-+. +++.+ +.|...+++..+.+..++ +-. ...++.-..+.++.+.+.+..-.+|-.-+-.|. |-.
T Consensus 115 ~~~~~~~--GvdGlivpDLP~ee~~~~~~~~~~----~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~Gv---TG~ 185 (265)
T COG0159 115 LRRAKEA--GVDGLLVPDLPPEESDELLKAAEK----HGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGV---TGA 185 (265)
T ss_pred HHHHHHc--CCCEEEeCCCChHHHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccc---cCC
Confidence 4555555 67764 445444444444444442 211 123444446779999888875455544333331 111
Q ss_pred cccCCcchhhhhc------cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 200 KNKTSDFFLIQFY------SCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 200 ~~~~~~~~~i~~i------~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+...... +-+.+ ..+| ++=||.+.++++++.+. ||||-||
T Consensus 186 ~~~~~~~-~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 186 RNPVSAD-VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred Ccccchh-HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1110000 11222 1356 56699999999999999 9999999
No 416
>PRK08005 epimerase; Validated
Probab=65.17 E-value=78 Score=32.46 Aligned_cols=112 Identities=15% Similarity=-0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCeE-EEccC--CCHHHHHHHHhcCcccccceeeecccC----hhhHHHHHHcCCcEEEEcccccccccc
Q psy3862 346 FEMAKHLAKHGLFT-TIHKY--YTLEEWKAFAVQNPDVIKHVADGGCTS----PGDVAKAMGAGADFVMLGGMFAGHDQS 418 (671)
Q Consensus 346 ~~mA~~la~~Gglg-vihr~--~~~e~~~~~v~~~~~~~~~v~~~~~~~----~~~~~~l~~aG~d~i~id~~a~gh~~~ 418 (671)
......+++.|.=- .+|-- ..+.+..+.+++.- ..++-..+ .+.++.+++ -+|.+.|=.+-.|+.-+
T Consensus 71 ~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G-----~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIG-----AKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQ 144 (210)
T ss_pred HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcC-----CcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccc
Confidence 34666778887533 34422 23666667776531 11111222 244555443 58888887444576421
Q ss_pred ccccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 419 GGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
.- +...+.-+..+|+++++ -+||| +...++.++.++|||.+.+|.
T Consensus 145 ~f-----~~~~~~KI~~l~~~~~~~~I~VDGG-I~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 145 QF-----IAAMCEKVSQSREHFPAAECWADGG-ITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred ee-----cHHHHHHHHHHHHhcccCCEEEECC-CCHHHHHHHHHCCCCEEEECh
Confidence 11 11111122233444332 47888 466666678899999998884
No 417
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=65.01 E-value=26 Score=35.77 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc-CCc--ch-hhhhc---cccC--CccccccHH
Q psy3862 155 REMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK-TSD--FF-LIQFY---SCIP--QAGNVVTGE 225 (671)
Q Consensus 155 r~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~-~~~--~~-~i~~i---~~~p--~aGnV~t~~ 225 (671)
++..+...+++..+.+.+.+..+.+.|+|++.+.- .-.|..|+. .+. +. +.+.. ..+| +-||| |.+
T Consensus 96 r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp----vf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ 170 (211)
T PRK03512 96 NAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGH----VFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGI-SLE 170 (211)
T ss_pred HHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC----ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHH
Confidence 33333345667777888888888899999997732 211111211 011 11 11111 1357 67888 577
Q ss_pred HHHHHHHcCCCEEEE
Q psy3862 226 MVEELILSGADVIKV 240 (671)
Q Consensus 226 ~a~~li~aGAdgvkV 240 (671)
.+.+++++||+||=|
T Consensus 171 ni~~l~~~Ga~GiAv 185 (211)
T PRK03512 171 RAPAVLATGVGSIAV 185 (211)
T ss_pred HHHHHHHcCCCEEEE
Confidence 788889999999944
No 418
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=64.96 E-value=76 Score=32.70 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 145 QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 145 ~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
....+.++++++.+|...+.+....+.+.+..+.++|||.++++
T Consensus 158 ~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvG 201 (228)
T PTZ00170 158 HDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAG 201 (228)
T ss_pred HHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 45567778777766654443333357789999999999999985
No 419
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=64.81 E-value=5.7 Score=40.94 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
|.+....|.-++-+| ..|.. .+..++..++ ..| ++|||-|.++++.++++|||+|-||
T Consensus 141 A~aae~~g~~ivyLe-~SG~~---------~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVG 204 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGAY---------GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVG 204 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCCc---------CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 445556788899888 33322 1222222221 235 7999999999999999999999988
No 420
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=64.72 E-value=88 Score=31.30 Aligned_cols=67 Identities=22% Similarity=0.457 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCceEEEeecc-CCC-----ChHHHHHHHHHHHhCCC----ceE-EEEEeccHHHHHHHHHCCCcEEEE
Q psy3862 119 LAGLKEILAALPEIEYICLDVA-NGY-----TQTFVDFVRRIREMYPK----HVI-IAGNVVTGEMVEELILSGADVIKV 187 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a-~G~-----~~~~~~~ik~lr~~~P~----~~l-i~g~v~t~e~a~~Li~AGaD~IvV 187 (671)
.++++.+.. ..+++.+... .|. .....+.++++++..+. ..+ ++| ..+.+.+..|.++|+|.+++
T Consensus 122 ~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G-GI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 122 LEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG-GINADNIKECAEAGADVFVA 197 (220)
T ss_pred HHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 455555543 2455544432 222 23345556655443221 223 445 45668999999999999988
Q ss_pred Cc
Q psy3862 188 GI 189 (671)
Q Consensus 188 dg 189 (671)
.+
T Consensus 198 gS 199 (220)
T PRK05581 198 GS 199 (220)
T ss_pred Ch
Confidence 43
No 421
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=64.49 E-value=29 Score=36.89 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=51.3
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC---CccccccHHHHHHHHHcCCCEEEE
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP---QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p---~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
...++..++.+-.+|.|+|.+|.-||..-...+.. ++..+. ..| +.++ +...++.+|++||+||-|
T Consensus 25 ~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~------~i~a~~~~g~~~lVRvp~~--~~~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 25 SSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYH------QLQAIAPYASQPVIRPVEG--SKPLIKQVLDIGAQTLLI 96 (267)
T ss_pred cCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHH------HHHHHHhcCCCeEEECCCC--CHHHHHHHhCCCCCeeEe
Confidence 34678999999999999999999999641111100 000010 011 2233 568889999999999953
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~ 272 (671)
|+....-|+.++.+
T Consensus 97 ------------------P~V~saeeA~~~V~ 110 (267)
T PRK10128 97 ------------------PMVDTAEQARQVVS 110 (267)
T ss_pred ------------------cCcCCHHHHHHHHH
Confidence 77766666655443
No 422
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=64.47 E-value=97 Score=30.66 Aligned_cols=126 Identities=21% Similarity=0.301 Sum_probs=60.0
Q ss_pred CceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCHHHHHHhhhcCcccccceEEecCCChh-hHHHHHHHHHhCCCce
Q psy3862 56 GVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAK-DLAGLKEILAALPEIE 133 (671)
Q Consensus 56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~-d~~rl~~l~~a~~~~d 133 (671)
+.|+...=|..- ..+.+..+.+.|.-|+ +|...+ ++..++++..........+. +++. ..++++++.. ..+
T Consensus 56 ~~~v~v~lm~~~-~~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~---~~d 128 (210)
T TIGR01163 56 DLPIDVHLMVEN-PDRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLP---DVD 128 (210)
T ss_pred CCcEEEEeeeCC-HHHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHh---hCC
Confidence 346543334332 2455555667766675 786644 23222222110000112222 2222 2455555533 335
Q ss_pred EEEeeccC-C-----CChHHHHHHHHHHHhC----CCceE-EEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 134 YICLDVAN-G-----YTQTFVDFVRRIREMY----PKHVI-IAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 134 ~Ivld~a~-G-----~~~~~~~~ik~lr~~~----P~~~l-i~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.+.+...+ | ......+.++++++.. |...+ ++|. .+.+.++.+++.|+|.+++.+
T Consensus 129 ~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~iivgs 194 (210)
T TIGR01163 129 LVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADILVAGS 194 (210)
T ss_pred EEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEEEECh
Confidence 54443221 1 1233445555554321 22334 4444 467999999999999998853
No 423
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=64.40 E-value=9.4 Score=42.83 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=26.1
Q ss_pred ceeeeeeecccCCCcccCceEEecCCCccc-cHHHHHHHHHcCCeE
Q psy3862 39 VDITRTFTFRNSGKTYQGVPIIAANMDTVG-TFEMAKHLAKHGLFT 83 (671)
Q Consensus 39 Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~~~lA~Ala~~gglg 83 (671)
+||++++ .+++|+-||+.++-.... ...+..++ .. |+|
T Consensus 2 ~~L~~~~-----~Gl~l~nPv~~aag~~~~~~~~~~~~~-~~-g~G 40 (420)
T PRK08318 2 ADLSITF-----CGIKSPNPFWLASAPPTNKYYNVARAF-EA-GWG 40 (420)
T ss_pred CCceEEE-----CCEecCCCcEeCCcCCCCCHHHHHHHH-Hh-CCC
Confidence 4788888 489999999999775543 34555544 33 565
No 424
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=64.20 E-value=1.5e+02 Score=29.07 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHH---hCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIRE---MYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~---~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~ 194 (671)
..+.+.+++.. +++.+.+..-+.....+.+.++++.+ .+ +..++. | ++.+.+.+.|+|-|=+...+-
T Consensus 14 ~~~~l~~~~~~--gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~-~~~lii-n----~~~~la~~~~~dGvHl~~~~~-- 83 (180)
T PF02581_consen 14 FLEQLEAALAA--GVDLVQLREKDLSDEELLELARRLAELCQKY-GVPLII-N----DRVDLALELGADGVHLGQSDL-- 83 (180)
T ss_dssp HHHHHHHHHHT--T-SEEEEE-SSS-HHHHHHHHHHHHHHHHHT-TGCEEE-E----S-HHHHHHCT-SEEEEBTTSS--
T ss_pred HHHHHHHHHHC--CCcEEEEcCCCCCccHHHHHHHHHHHHhhcc-eEEEEe-c----CCHHHHHhcCCCEEEeccccc--
Confidence 45778888887 67888887654334555555555543 33 223333 2 355667789999994433211
Q ss_pred EEEEecccCCcchhhhhcc-ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 195 CTTRLKNKTSDFFLIQFYS-CIPQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 195 ~~t~v~~~~~~~~~i~~i~-~~p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.....+... ...++-.+-+.+.++.+.+.|+|-+=+|
T Consensus 84 ---------~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~g 122 (180)
T PF02581_consen 84 ---------PPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLG 122 (180)
T ss_dssp ---------SHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEE
T ss_pred ---------chHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEEC
Confidence 1111111110 1114556667888888888999977554
No 425
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=63.52 E-value=1.1e+02 Score=34.44 Aligned_cols=68 Identities=22% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCceEEEeec--cCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862 119 LAGLKEILAALPEIEYICLDV--ANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~--a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
.++++.+ .. +.+.+.+-. ..+...+..+.++++++..++..+.+....+.+.++.++++|+|.+++.+
T Consensus 290 ~e~i~~l-~~--~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGs 359 (391)
T PRK13307 290 VKLLESL-KV--KPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGR 359 (391)
T ss_pred HHHHHHh-hC--CCCEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 3555555 32 456554432 11111233456666666444444444434568889999999999998854
No 426
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=63.34 E-value=16 Score=37.07 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeee
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLR 303 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~ 303 (671)
.+.++.+.++|+|-+-+=| .=|..+|.++-=.+..++-++.
T Consensus 15 ~~~i~~l~~~g~d~lHiDi----------MDg~fvpn~~~g~~~i~~i~~~----------------------------- 55 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHIDI----------MDGHFVPNLTFGPDIIKAIRKI----------------------------- 55 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEE----------EBSSSSSSB-B-HHHHHHHHTT-----------------------------
T ss_pred HHHHHHHHHcCCCEEEEee----------cccccCCcccCCHHHHHHHhhc-----------------------------
Q ss_pred cCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccc
Q psy3862 304 PKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH 383 (671)
Q Consensus 304 P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~ 383 (671)
.+..+++-++..| ..+....+.+.|.=.+.-..++.++..+.++..++.--.
T Consensus 56 -----------------------~~~~~DvHLMv~~-----P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k 107 (201)
T PF00834_consen 56 -----------------------TDLPLDVHLMVEN-----PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIK 107 (201)
T ss_dssp -----------------------SSSEEEEEEESSS-----GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSE
T ss_pred -----------------------CCCcEEEEeeecc-----HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCC
Q ss_pred eeeecc--cChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCc-------eeeccccCchhH
Q psy3862 384 VADGGC--TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG-------VVDGGCTSPGDV 454 (671)
Q Consensus 384 v~~~~~--~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~gG~v~t~~~ 454 (671)
++.+-. |.-+.++++++ -+|++.+=.+-.|..-+.. ....+.-+..+++++++ .++|| +...++
T Consensus 108 ~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f-----~~~~~~KI~~l~~~~~~~~~~~~I~vDGG-I~~~~~ 180 (201)
T PF00834_consen 108 AGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGGQKF-----IPEVLEKIRELRKLIPENGLDFEIEVDGG-INEENI 180 (201)
T ss_dssp EEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSSB-------HGGHHHHHHHHHHHHHHHTCGSEEEEESS-ESTTTH
T ss_pred EEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCcccc-----cHHHHHHHHHHHHHHHhcCCceEEEEECC-CCHHHH
Q ss_pred HHHHHcCCcEEEEC
Q psy3862 455 AKAMGAGADFVMLG 468 (671)
Q Consensus 455 a~~l~aGAd~V~vG 468 (671)
.+..++|||.+.+|
T Consensus 181 ~~~~~aGad~~V~G 194 (201)
T PF00834_consen 181 KQLVEAGADIFVAG 194 (201)
T ss_dssp HHHHHHT--EEEES
T ss_pred HHHHHcCCCEEEEC
No 427
>PRK02227 hypothetical protein; Provisional
Probab=63.26 E-value=36 Score=35.57 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=71.4
Q ss_pred ChhhHHHHHHHHHhCCCceEEEeeccC-CCC-hHHHHHHHHHHHhCCCceEEEEEec--------cHHHHHHHHHCCCcE
Q psy3862 115 SAKDLAGLKEILAALPEIEYICLDVAN-GYT-QTFVDFVRRIREMYPKHVIIAGNVV--------TGEMVEELILSGADV 184 (671)
Q Consensus 115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~-G~~-~~~~~~ik~lr~~~P~~~li~g~v~--------t~e~a~~Li~AGaD~ 184 (671)
++.+.+++...+.. ++|+|-+.... |-. .+....+++++...|.-..+-+.+. ....+..+..+|||+
T Consensus 6 Svr~~eEA~~Al~~--GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDy 83 (238)
T PRK02227 6 SVRNLEEALEALAG--GADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADY 83 (238)
T ss_pred ccCCHHHHHHHHhc--CCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCE
Confidence 44567777777777 77777664332 221 2223334444332221111222221 135566677799999
Q ss_pred EEECcCCCce---EE-------EEecccCCcchhhhhc-cccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862 185 IKVGIGPGSV---CT-------TRLKNKTSDFFLIQFY-SCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK 253 (671)
Q Consensus 185 IvVdga~G~~---~~-------t~v~~~~~~~~~i~~i-~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V 253 (671)
|+|.-.+.+. |. +.++...++..++... .+..-+|.+...+-...+.++|++|+.+= |...
T Consensus 84 VKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlD--------Ta~K 155 (238)
T PRK02227 84 VKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLD--------TAIK 155 (238)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEe--------cccC
Confidence 9998765442 11 1111111121111100 01124677777888888889999999996 7777
Q ss_pred cccCcc
Q psy3862 254 TGVGYP 259 (671)
Q Consensus 254 ~gv~~~ 259 (671)
.|-.-.
T Consensus 156 dg~~Lf 161 (238)
T PRK02227 156 DGKSLF 161 (238)
T ss_pred CCcchH
Confidence 765533
No 428
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=63.21 E-value=13 Score=39.37 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc----cc-C--
Q psy3862 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS----CI-P-- 216 (671)
Q Consensus 147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~----~~-p-- 216 (671)
-+++++.-++. ...-.+-+.++++|+++.+||||+|++-- .+|++-.+.....-.....++-+. .+ |
T Consensus 139 EVemi~~A~~~---gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~di 215 (268)
T PF09370_consen 139 EVEMIRKAHEK---GLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDI 215 (268)
T ss_dssp HHHHHHHHHHT---T-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-
T ss_pred HHHHHHHHHHC---CCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCe
Confidence 35556554442 23455678899999999999999999854 333221100000000011111110 11 2
Q ss_pred ----CccccccHHHHHHHHH--cCCCEEEEc
Q psy3862 217 ----QAGNVVTGEMVEELIL--SGADVIKVG 241 (671)
Q Consensus 217 ----~aGnV~t~~~a~~li~--aGAdgvkVG 241 (671)
.+|.|+|.+.++..++ .|++|+.-|
T Consensus 216 i~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~ 246 (268)
T PF09370_consen 216 IVLCHGGPIATPEDAQYVLRNTKGIHGFIGA 246 (268)
T ss_dssp EEEEECTTB-SHHHHHHHHHH-TTEEEEEES
T ss_pred EEEEeCCCCCCHHHHHHHHhcCCCCCEEecc
Confidence 6999999999999997 456787433
No 429
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=63.14 E-value=33 Score=37.20 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHH------cCCeEEEccCC---------CHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEE
Q psy3862 343 VGTFEMAKHLAK------HGLFTTIHKYY---------TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVM 407 (671)
Q Consensus 343 V~~~~mA~~la~------~Gglgvihr~~---------~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~ 407 (671)
|.+.+=|.+..+ .|.=.++=-|+ ++|+..+.+...++.. .+-++|+++.+.+....+.|+|+|.
T Consensus 210 v~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~~-~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 210 TRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGRF-ETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred ECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCCc-eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 345777888888 77777777888 9999999887654322 3888999999999999999999999
Q ss_pred Eccccccccccccc
Q psy3862 408 LGGMFAGHDQSGGE 421 (671)
Q Consensus 408 id~~a~gh~~~~~~ 421 (671)
+. +--||...++
T Consensus 289 ~G--althsa~~~D 300 (308)
T PLN02716 289 SG--ALTHSVKALD 300 (308)
T ss_pred eC--ccccCCCccc
Confidence 85 4455444443
No 430
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=62.58 E-value=18 Score=37.07 Aligned_cols=67 Identities=30% Similarity=0.409 Sum_probs=35.4
Q ss_pred ecccChhhHHHH----HHcCCcEEEEccccccccccccccccccccccccccccccccC----ceeeccccCchhHHH-H
Q psy3862 387 GGCTSPGDVAKA----MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG----GVVDGGCTSPGDVAK-A 457 (671)
Q Consensus 387 ~~~~~~~~~~~l----~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~gG~v~t~~~a~-~ 457 (671)
.+-.+++++.++ .++|+||+- ++.|+....-.+ +.+..+++..+ =...||+. +.+.+. +
T Consensus 126 ~~~L~~~ei~~a~~ia~eaGADfvK---TsTGf~~~gat~--------~dv~~m~~~v~~~v~IKaaGGir-t~~~a~~~ 193 (211)
T TIGR00126 126 TGLLTDEEIRKACEICIDAGADFVK---TSTGFGAGGATV--------EDVRLMRNTVGDTIGVKASGGVR-TAEDAIAM 193 (211)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCEEE---eCCCCCCCCCCH--------HHHHHHHHHhccCCeEEEeCCCC-CHHHHHHH
Confidence 333445554443 689999999 556664111000 11111222222 24567754 777766 5
Q ss_pred HHcCCcEE
Q psy3862 458 MGAGADFV 465 (671)
Q Consensus 458 l~aGAd~V 465 (671)
+++||+.+
T Consensus 194 i~aGa~ri 201 (211)
T TIGR00126 194 IEAGASRI 201 (211)
T ss_pred HHHhhHHh
Confidence 69998865
No 431
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=62.40 E-value=2.9e+02 Score=31.74 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=44.5
Q ss_pred HHHHHHhCCCce-EEE-EEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHH
Q psy3862 151 VRRIREMYPKHV-IIA-GNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVE 228 (671)
Q Consensus 151 ik~lr~~~P~~~-li~-g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~ 228 (671)
-.++....|... +++ +.+.|.++++.|.+ |+|++-|+. +. ++..-|.-.+.+++....--=|+-+.+.++
T Consensus 200 ~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~----~l---m~~~d~~~~~~~L~~~~vKICGit~~eda~ 271 (454)
T PRK09427 200 TRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGS----SL---MAEDDLELAVRKLILGENKVCGLTRPQDAK 271 (454)
T ss_pred HHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECH----HH---cCCCCHHHHHHHHhccccccCCCCCHHHHH
Confidence 334444456443 344 35678999999865 799998843 10 111001100111111001123577999999
Q ss_pred HHHHcCCCEE
Q psy3862 229 ELILSGADVI 238 (671)
Q Consensus 229 ~li~aGAdgv 238 (671)
.+.++|||.+
T Consensus 272 ~a~~~GaD~l 281 (454)
T PRK09427 272 AAYDAGAVYG 281 (454)
T ss_pred HHHhCCCCEE
Confidence 9999999976
No 432
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=62.26 E-value=7.5 Score=41.06 Aligned_cols=60 Identities=27% Similarity=0.320 Sum_probs=40.3
Q ss_pred HHHHHHHHHCC-CcEEEECc-CCCceEEEEecccCCcchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 171 GEMVEELILSG-ADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 171 ~e~a~~Li~AG-aD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.++..+..| +|+|++.| +.|... +...+..+ ...| ++||+ |.+.+..+++. |||+-||
T Consensus 160 ~e~a~~~~~~~~aDavivtG~~TG~~~---------d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVg 227 (257)
T TIGR00259 160 ESIALDTVERGLADAVILSGKTTGTEV---------DLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVA 227 (257)
T ss_pred HHHHHHHHHhcCCCEEEECcCCCCCCC---------CHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEEC
Confidence 57788877777 99999988 555321 11122222 1235 56776 78888888887 9999998
No 433
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=61.79 E-value=27 Score=36.93 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.1
Q ss_pred eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 443 VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
++++|+-.+.|++++|+.|||+|.+..
T Consensus 193 ivdAGIgt~sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 193 IIDAGIGTPSEASQAMELGASGVLLNT 219 (267)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 568998777888889999999998874
No 434
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.19 E-value=58 Score=35.46 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEE---eccc-CCc---chhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEE
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTR---LKNK-TSD---FFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVI 238 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~---v~~~-~~~---~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgv 238 (671)
+.++.|.++|+|.|-+-++.-...... .... .+. ......++ .+| ..|++.|.+.+..+++.| ||.|
T Consensus 240 ~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 240 EVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 557788899999998743210011100 0000 000 11111121 356 699999999999999987 8988
Q ss_pred EEc
Q psy3862 239 KVG 241 (671)
Q Consensus 239 kVG 241 (671)
-+|
T Consensus 320 ~lg 322 (338)
T cd04733 320 GLA 322 (338)
T ss_pred eeC
Confidence 665
No 435
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=60.86 E-value=54 Score=34.14 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=27.8
Q ss_pred CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchh
Q psy3862 217 QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQF 261 (671)
Q Consensus 217 ~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~ 261 (671)
+.=|+-|+-.++.+-++|.|++.+| |+.|+.-. |+|-.
T Consensus 12 ~~~~~~D~~sA~~~e~~G~~ai~~s---~~~~~~s~----G~pD~ 49 (243)
T cd00377 12 VLPGAWDALSARLAERAGFKAIYTS---GAGVAASL----GLPDG 49 (243)
T ss_pred EecCCCCHHHHHHHHHcCCCEEEec---cHHHHHhc----CCCCC
Confidence 3557778888888899999999998 45444332 88843
No 436
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=60.82 E-value=63 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHH-hCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCc---------------eEEEEEec-----cHHHHHH
Q psy3862 119 LAGLKEILA-ALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKH---------------VIIAGNVV-----TGEMVEE 176 (671)
Q Consensus 119 ~~rl~~l~~-a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~---------------~li~g~v~-----t~e~a~~ 176 (671)
.+++..+++ + +++.+.+... ....++|+.+++.. |.. .++.|.-. ..+++++
T Consensus 93 v~~a~r~~~~a--Ga~aVkiEd~----~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a 166 (254)
T cd06557 93 LRNAARLMKEA--GADAVKLEGG----AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALA 166 (254)
T ss_pred HHHHHHHHHHh--CCeEEEEcCc----HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHH
Confidence 456677777 6 8888888632 45667777775532 321 12222111 1388999
Q ss_pred HHHCCCcEEEECcC
Q psy3862 177 LILSGADVIKVGIG 190 (671)
Q Consensus 177 Li~AGaD~IvVdga 190 (671)
+.+||||.|++.+-
T Consensus 167 ~~~AGA~~i~lE~v 180 (254)
T cd06557 167 LEEAGAFALVLECV 180 (254)
T ss_pred HHHCCCCEEEEcCC
Confidence 99999999988654
No 437
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.80 E-value=35 Score=34.73 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHcC--CeEEEc-----cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHH-HcCCcEEEEc
Q psy3862 343 VGTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAM-GAGADFVMLG 409 (671)
Q Consensus 343 V~~~~mA~~la~~G--glgvih-----r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~-~aG~d~i~id 409 (671)
+|+.+-|...+++| .+|+|+ |+.++|+..+....+|..++.|+..-..+++++.++. +.+.|++-+.
T Consensus 8 it~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 8 FTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred CCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 67889999999988 688886 7889998888887776544445544444567787775 4789999874
No 438
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=60.03 E-value=52 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCEEEEcccCCC
Q psy3862 226 MVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 226 ~a~~li~aGAdgvkVG~~~~~ 246 (671)
-++.+.+.|.|.+||....--
T Consensus 102 fv~~a~~~Gidi~RIfd~lnd 122 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALND 122 (499)
T ss_pred HHHHHHHcCCCEEEEEecCCh
Confidence 567778889999999854443
No 439
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=59.49 E-value=77 Score=33.56 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCeEEEccC--CCHHHHHHHHh
Q psy3862 346 FEMAKHLAKHGLFTTIHKY--YTLEEWKAFAV 375 (671)
Q Consensus 346 ~~mA~~la~~Gglgvihr~--~~~e~~~~~v~ 375 (671)
+++.+++++.|----|-|- .++|||..-+.
T Consensus 106 ~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aae 137 (258)
T TIGR01362 106 TDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVE 137 (258)
T ss_pred HHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 5788888888776666664 89999988764
No 440
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=59.45 E-value=22 Score=37.28 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=52.2
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC---CccccccHHHHHHHHHcCCCEEEE
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP---QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p---~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
...++..++.+-.+|.|+|.+|.-||..-...+. .++..+. ..| +..+ +...++.++++||+||-
T Consensus 19 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~------~~~~a~~~~g~~~~VRvp~~--~~~~i~r~LD~Ga~gIi- 89 (249)
T TIGR03239 19 ALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFI------PQLMALKGSASAPVVRPPWN--EPVIIKRLLDIGFYNFL- 89 (249)
T ss_pred cCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHH------HHHHHHhhcCCCcEEECCCC--CHHHHHHHhcCCCCEEE-
Confidence 4567899999999999999999999964111110 0000000 011 3333 78889999999999994
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~ 272 (671)
.|+..-.-|+.++.+
T Consensus 90 -----------------vP~v~taeea~~~v~ 104 (249)
T TIGR03239 90 -----------------IPFVESAEEAERAVA 104 (249)
T ss_pred -----------------ecCcCCHHHHHHHHH
Confidence 377777767665554
No 441
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.41 E-value=57 Score=35.77 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=22.4
Q ss_pred cccccCc-eeeccccCchhHHH-HHHcC-CcEEEECc
Q psy3862 436 MNSYLGG-VVDGGCTSPGDVAK-AMGAG-ADFVMLGG 469 (671)
Q Consensus 436 ~~~~~~~-~i~gG~v~t~~~a~-~l~aG-Ad~V~vG~ 469 (671)
+|+...- ++.+|.+.+.+.++ +++.| +|.|++|.
T Consensus 271 ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR 307 (353)
T cd02930 271 LKRAVDIPVIASNRINTPEVAERLLADGDADMVSMAR 307 (353)
T ss_pred HHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhH
Confidence 3444332 66666677777666 67655 99999985
No 442
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=58.79 E-value=67 Score=39.11 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=36.0
Q ss_pred HHcCCcEEEEccccccccccccccccccccccccccccccccCc-eeeccccCchhHHH-HHH-cCCcEEEECc
Q psy3862 399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMG-AGADFVMLGG 469 (671)
Q Consensus 399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~-aGAd~V~vG~ 469 (671)
.++|+|+|.|-+- ++....-.. .......++.+.+|+..+- ++..|.+.+.+.++ .+. .+||.|++|.
T Consensus 648 ~~~g~d~i~vs~g--~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR 718 (765)
T PRK08255 648 KAAGADLIDVSSG--QVSKDEKPV-YGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALAR 718 (765)
T ss_pred HhcCCcEEEeCCC--CCCcCCCCC-cCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcH
Confidence 5679999998521 111100000 0000111233345554442 66667778888776 565 4599999986
No 443
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=58.48 E-value=1.5e+02 Score=33.00 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEEEcccCCCccccce--ecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeee
Q psy3862 225 EMVEELILSGADVIKVGIGPGSVCTTRL--KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVML 302 (671)
Q Consensus 225 ~~a~~li~aGAdgvkVG~~~~~~~~Tr~--V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll 302 (671)
+.|+.+-++|+.-+|-|.-- --|.. --|.|. ...-+..++++++|+.+++
T Consensus 136 ~~A~~lk~~g~~~~r~~~~k---pRtsp~~f~g~~~---e~l~~L~~~~~~~Gl~~~t---------------------- 187 (360)
T PRK12595 136 AVAKALKAKGLKLLRGGAFK---PRTSPYDFQGLGV---EGLKILKQVADEYGLAVIS---------------------- 187 (360)
T ss_pred HHHHHHHHcCCcEEEccccC---CCCCCccccCCCH---HHHHHHHHHHHHcCCCEEE----------------------
Confidence 34566666788777754311 11211 234443 3444556667787877666
Q ss_pred ecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC--CHHHHHHHH
Q psy3862 303 RPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY--TLEEWKAFA 374 (671)
Q Consensus 303 ~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~--~~e~~~~~v 374 (671)
++-...++|+-.++ +|++==+=-.++.+++..++++.|---+|-+.+ +++||..-+
T Consensus 188 -----~v~d~~~~~~l~~~-----------vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Av 245 (360)
T PRK12595 188 -----EIVNPADVEVALDY-----------VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAA 245 (360)
T ss_pred -----eeCCHHHHHHHHHh-----------CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHH
Confidence 22222334433322 222222222345677888888888777777764 888888766
No 444
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=58.29 E-value=1.4e+02 Score=33.20 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHhCCC-ceEEEeeccCCC---------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCC-Cc
Q psy3862 115 SAKDLAGLKEILAALPE-IEYICLDVANGY---------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG-AD 183 (671)
Q Consensus 115 ~~~d~~rl~~l~~a~~~-~d~Ivld~a~G~---------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AG-aD 183 (671)
+.++...+.+.++.. + ++.+.+.....+ ....++..++++...-...+.+|.+.+++.|+.+++.| +|
T Consensus 235 ~~~e~~~la~~L~~~-G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 235 TIEEAVELAKALEEA-GLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred CHHHHHHHHHHHHhc-CCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 333443443333432 4 577766543322 12333444445433222345666789999999999998 99
Q ss_pred EEEE
Q psy3862 184 VIKV 187 (671)
Q Consensus 184 ~IvV 187 (671)
.|-+
T Consensus 314 lVa~ 317 (363)
T COG1902 314 LVAM 317 (363)
T ss_pred EEEe
Confidence 9955
No 445
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=58.18 E-value=2.2e+02 Score=28.99 Aligned_cols=153 Identities=24% Similarity=0.236 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHcC--CeEEee-----cCCCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862 68 GTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA 140 (671)
Q Consensus 68 t~~~lA~Ala~~g--glgvIh-----~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a 140 (671)
+..+-|..+++.| -+|+|+ |..++|+..+.....+....++++....+ .+.+.++++.. +.+++-+
T Consensus 11 ~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~---~~~i~~~~~~~-~~d~vQL--- 83 (210)
T PRK01222 11 TTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNAS---DEEIDEIVETV-PLDLLQL--- 83 (210)
T ss_pred CcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCC---HHHHHHHHHhc-CCCEEEE---
Confidence 4444455555555 568874 23555543333332332234555543333 44555555431 4466655
Q ss_pred CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHH--CCCcEEEECcC----CCceEEE---EecccCCcchhhhh
Q psy3862 141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELIL--SGADVIKVGIG----PGSVCTT---RLKNKTSDFFLIQF 211 (671)
Q Consensus 141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~--AGaD~IvVdga----~G~~~~t---~v~~~~~~~~~i~~ 211 (671)
||. ...+.++.+++.++.-.+-+-.+...+....+.+ ..+|.+.+|+. +|+..+- .+....
T Consensus 84 Hg~--e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~~~-------- 153 (210)
T PRK01222 84 HGD--ETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPAGL-------- 153 (210)
T ss_pred CCC--CCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhhcc--------
Confidence 332 1234455555544321221223333323333322 36899999973 3443211 110111
Q ss_pred ccccC--CccccccHHHHHHHHH-cCCCEEEE
Q psy3862 212 YSCIP--QAGNVVTGEMVEELIL-SGADVIKV 240 (671)
Q Consensus 212 i~~~p--~aGnV~t~~~a~~li~-aGAdgvkV 240 (671)
..| .|||+ +.+.+..++. ....||=|
T Consensus 154 --~~p~~LAGGi-~peNv~~ai~~~~p~gvDv 182 (210)
T PRK01222 154 --AKPWILAGGL-NPDNVAEAIRQVRPYGVDV 182 (210)
T ss_pred --CCCEEEECCC-CHHHHHHHHHhcCCCEEEe
Confidence 123 79998 5556666665 47777765
No 446
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.79 E-value=45 Score=35.38 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409 (671)
Q Consensus 343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id 409 (671)
|-+.+-|.+..+.|.=.+.--++++|+..+.+...++-+ .+.++||++++.+..+.++|+|.|.+-
T Consensus 189 v~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~i-pi~AiGGI~~~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 189 VETLEQLKEALEAGADIIMLDNMSPEELREAVALLKGRV-LLEASGGITLENIRAYAETGVDYISVG 254 (268)
T ss_pred ECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCC-cEEEECCCCHHHHHHHHHcCCCEEEEE
Confidence 345677877778887777677888999888776543212 377899999999999999999999985
No 447
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=57.66 E-value=26 Score=35.24 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhc
Q psy3862 347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQ 376 (671)
Q Consensus 347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~ 376 (671)
.|...+-+.-|+-+++ .+.++|+..+.+.+
T Consensus 100 ~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~ 131 (201)
T cd02070 100 NLVATMLEANGFEVIDLGRDVPPEEFVEAVKE 131 (201)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 4666788888888887 67788888888755
No 448
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=57.56 E-value=50 Score=39.81 Aligned_cols=72 Identities=25% Similarity=0.185 Sum_probs=46.8
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c-c-CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C-I-PQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~-~-p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
-+.+++.++.++++|+++|-|.--.= .|.-.+...+..+.+++. . + ..-+||-|.+.++.+..+|||||.||
T Consensus 166 Evh~~~el~~a~~~ga~iiGINnRdL---~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIG 240 (695)
T PRK13802 166 ETHTREEIERAIAAGAKVIGINARNL---KDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVG 240 (695)
T ss_pred EeCCHHHHHHHHhCCCCEEEEeCCCC---ccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 56889999999999999995422110 010000001122333331 1 1 15799999999999999999999999
No 449
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=57.05 E-value=32 Score=33.36 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcc-------ccceecccCcch----hhhHHHHHHHhhhcCCcchhhhhhccceeecc
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVC-------TTRLKTGVGYPQ----FSAVLECADAAHGLGGHIISFLTAMAQKIIND 292 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~-------~Tr~V~gv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 292 (671)
.+.+..+++.|++|+.+.-..=..+ ....+.|+|.+. .....+-++.|.+.|
T Consensus 16 ~~~~~~~~~~gv~gi~~~g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G----------------- 78 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNPGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG----------------- 78 (201)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC-----------------
Confidence 3455666778888887763111101 122356677766 666666666666554
Q ss_pred ccCCCceeeeecCCCccCC---CCcccceeeeeeccCCceeeCcceEecCCCCCC-CHHHHHHH---HHcCCeEEEc-cC
Q psy3862 293 IKLDFKDVMLRPKRSTLKS---RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-TFEMAKHL---AKHGLFTTIH-KY 364 (671)
Q Consensus 293 ~~l~fdDVll~P~rst~~s---r~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~-~~~mA~~l---a~~Gglgvih-r~ 364 (671)
.|-+++.|.+-...+ +.-.+.-+++. + ....++|++.-|...-+ +++.-..+ ++.-|+-.|. ..
T Consensus 79 ----ad~i~v~~~~~~~~~~~~~~~~~~~~~i~--~--~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 79 ----ADEIDVVINIGSLKEGDWEEVLEEIAAVV--E--AADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred ----CCEEEEeccHHHHhCCCHHHHHHHHHHHH--H--HhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 445555543321111 01111111111 0 00136888876664433 44443333 3344544443 22
Q ss_pred ------CCHHHHHHHHhcCcccccceeeecccC-hhhHHHHHHcCCcEEEE
Q psy3862 365 ------YTLEEWKAFAVQNPDVIKHVADGGCTS-PGDVAKAMGAGADFVML 408 (671)
Q Consensus 365 ------~~~e~~~~~v~~~~~~~~~v~~~~~~~-~~~~~~l~~aG~d~i~i 408 (671)
.+++...+.....+.-+ .+...++.. .+.+...+.+|++-+++
T Consensus 151 ~~~~~~~~~~~~~~i~~~~~~~~-~v~~~gg~~~~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 151 GFGGGGATVEDVKLMKEAVGGRV-GVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCCCCCCCHHHHHHHHHhcccCC-cEEEECCCCCHHHHHHHHHhccceeec
Confidence 26666655544433111 244455544 56777778889887763
No 450
>PRK08999 hypothetical protein; Provisional
Probab=56.99 E-value=25 Score=37.46 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=46.5
Q ss_pred eEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc--hhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862 162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF--FLIQFYS---CIP--QAGNVVTGEMVEELILSG 234 (671)
Q Consensus 162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~--~~i~~i~---~~p--~aGnV~t~~~a~~li~aG 234 (671)
.+++....+.+.+..+.+.|+|++.+.- .=.|..|+..+.+ ..+..+. .+| +-||| +.+.+..++++|
T Consensus 227 ~~ig~S~h~~~~~~~a~~~~~dyi~~gp----vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g 301 (312)
T PRK08999 227 RWVAASCHDAEELARAQRLGVDFAVLSP----VQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHG 301 (312)
T ss_pred CEEEEecCCHHHHHHHHhcCCCEEEECC----CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhC
Confidence 3566667788888888899999997732 2111122222221 1111111 356 68899 999999999999
Q ss_pred CCEE
Q psy3862 235 ADVI 238 (671)
Q Consensus 235 Adgv 238 (671)
|+||
T Consensus 302 ~~gv 305 (312)
T PRK08999 302 AQGI 305 (312)
T ss_pred CCEE
Confidence 9998
No 451
>PLN02389 biotin synthase
Probab=56.98 E-value=85 Score=35.06 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 220 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 220 nV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
|..+.+.++.|.++|+|.+-+.+-. |--.-+.++. ...+.-.+++.+.+|++|.++.+
T Consensus 174 G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~--~~s~e~rl~ti~~a~~~Gi~v~s 231 (379)
T PLN02389 174 GMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVIT--TRSYDDRLETLEAVREAGISVCS 231 (379)
T ss_pred CCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCC--CCCHHHHHHHHHHHHHcCCeEeE
Confidence 4679999999999999999887753 1111122221 22677888999999887755433
No 452
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=56.92 E-value=23 Score=42.79 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHcCCcEEEEccccccccccccccccccccccccccccccccCc--eeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
++.|+|++||=++...|.+..-.+.+.++..- .++ ++.||++.+.+...+.++|+|.+ +.+|
T Consensus 630 ~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------~~~v~vl~GG~~~~~~~~~l~~aGvD~~----i~~g 693 (714)
T PRK09426 630 VENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------REDIMVVVGGVIPPQDYDFLYEAGVAAI----FGPG 693 (714)
T ss_pred HHcCCCEEEEeccchhhHHHHHHHHHHHHhcC---------CCCcEEEEeCCCChhhHHHHHhCCCCEE----ECCC
Confidence 45677777775444455544444433333221 111 45788877777755779999987 5666
No 453
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.74 E-value=1.7e+02 Score=31.04 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcccc-ceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 224 GEMVEELILSGADVIKVGIGPGSVCTT-RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 224 ~~~a~~li~aGAdgvkVG~~~~~~~~T-r~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
-+-|+.|-++|+..+|.|.== --|+ -.--|.| -....+..++++++|.++++
T Consensus 44 ~~~A~~lk~~g~~~~r~~~~k--pRTs~~s~~G~g---~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGAFK--PRTSPYSFQGLG---EEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred HHHHHHHHHcCCCEEEEeeec--CCCCCCccCCcH---HHHHHHHHHHHHHcCCCEEE
Confidence 456777888999999999531 1111 0123333 34455566667888877766
No 454
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.61 E-value=42 Score=33.64 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc
Q psy3862 363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412 (671)
Q Consensus 363 r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a 412 (671)
-|++.|++.+|+....+---.++-+|..+.|++.-|.+.|.|++=+.|.+
T Consensus 162 dfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaa 211 (235)
T COG1891 162 DFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAA 211 (235)
T ss_pred hhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHhCCCeeeecchh
Confidence 58899999999865333222345566677888888999999999988544
No 455
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=56.30 E-value=43 Score=35.31 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=51.1
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC---CccccccHHHHHHHHHcCCCEEEE
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP---QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p---~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
...++..++.+-.+|.|+|.+|.-||..-...+. .++..+. ..| +..+ +...++.++++||+||-
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~------~~i~a~~~~g~~~lVRvp~~--~~~~i~r~LD~Ga~gii- 96 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFI------PQLMALKGSASAPVVRVPTN--EPVIIKRLLDIGFYNFL- 96 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHH------HHHHHHhhcCCCcEEECCCC--CHHHHHHHhCCCCCeee-
Confidence 3467899999999999999999999964111000 0000000 011 2233 67888999999999993
Q ss_pred cccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862 241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272 (671)
Q Consensus 241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~ 272 (671)
.|+..-.-|+.++.+
T Consensus 97 -----------------vP~v~tae~a~~~v~ 111 (256)
T PRK10558 97 -----------------IPFVETAEEARRAVA 111 (256)
T ss_pred -----------------ecCcCCHHHHHHHHH
Confidence 377766666655543
No 456
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=55.64 E-value=31 Score=36.55 Aligned_cols=121 Identities=20% Similarity=0.130 Sum_probs=72.7
Q ss_pred CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCc-cccccee-eecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422 (671)
Q Consensus 345 ~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~-~~~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~ 422 (671)
..++...+++.|-=|+|=--.++||..++..... .-+..+. .+-.++++++.++.+..-.||... +..|-.-...++
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v-s~~GvTG~~~~~ 182 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV-SRMGVTGSRTEL 182 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE-SSSSSSSTTSSC
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee-ccCCCCCCcccc
Confidence 3468888899999999998888887766553321 1133333 233456788888888878888876 333322111111
Q ss_pred ccccccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 423 TNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
......++..+|++... +++|==+.+.+.++.+..|||+|.||.
T Consensus 183 ---~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGS 227 (259)
T PF00290_consen 183 ---PDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGS 227 (259)
T ss_dssp ---HHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESH
T ss_pred ---hHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECH
Confidence 11122345566777643 444433678888887779999999994
No 457
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=55.56 E-value=85 Score=35.90 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEECcCCCc
Q psy3862 120 AGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKVGIGPGS 193 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvVdga~G~ 193 (671)
+.++++.++ +++.|.+...-|. |....++++.+++.++ ..+-.-...| ...+.+++++|||.|....++
T Consensus 158 ~~a~~l~~~--Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g-- 232 (448)
T PRK12331 158 KLAKEMQEM--GADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP-- 232 (448)
T ss_pred HHHHHHHHc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc--
Confidence 345566666 7888888777675 5777788888887765 3332222222 356667889999999543221
Q ss_pred eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHc
Q psy3862 194 VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS 233 (671)
Q Consensus 194 ~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~a 233 (671)
+. +-+||..|-+-+.+|-..
T Consensus 233 -----lg---------------~gaGN~~tE~lv~~L~~~ 252 (448)
T PRK12331 233 -----FA---------------GGTSQPATESMVAALQDL 252 (448)
T ss_pred -----cC---------------CCcCCHhHHHHHHHHHhc
Confidence 10 137888887777666443
No 458
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=55.50 E-value=1.6e+02 Score=27.02 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=30.9
Q ss_pred ceEEEeeccCCCC-hHHHHHHHHHHHhCC-CceEEEEEeccHHHHHHHHHCCCcEEE
Q psy3862 132 IEYICLDVANGYT-QTFVDFVRRIREMYP-KHVIIAGNVVTGEMVEELILSGADVIK 186 (671)
Q Consensus 132 ~d~Ivld~a~G~~-~~~~~~ik~lr~~~P-~~~li~g~v~t~e~a~~Li~AGaD~Iv 186 (671)
.+++.+....+.. ....+.++.+++..| ...+++|.....+..+.|.++|+|.+.
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 3455444333322 333445566666644 445555532345667788999999983
No 459
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.38 E-value=52 Score=35.21 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421 (671)
Q Consensus 343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~ 421 (671)
|-+.+-|.+-.+.|.=.+.--++++|+..+.+...+.- -.+.++||++++.+..+.++|+|+|.+. +--||...++
T Consensus 196 v~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~-i~leAsGGIt~~ni~~~a~tGvD~Isvg--~lt~s~~~~D 271 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGR-AKLEASGGINESTLRVIAETGVDYISIG--AMTKDVKAVD 271 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCC-CcEEEECCCCHHHHHHHHHcCCCEEEEC--hhhcCCcccc
Confidence 34467777777887777777899999988877544211 2477899999999999999999999985 4445444443
No 460
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=55.33 E-value=83 Score=37.29 Aligned_cols=179 Identities=21% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccC--------CccccccHHH---------HHHHHHcC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIP--------QAGNVVTGEM---------VEELILSG 234 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p--------~aGnV~t~~~---------a~~li~aG 234 (671)
.-++.|.++|++.|-+.|+.---+.-+-..+-|--.+..+-+.+| -+-|+..++. ++.+.++|
T Consensus 30 ~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~G 109 (592)
T PRK09282 30 PIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENG 109 (592)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCC
Q ss_pred CCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCc
Q psy3862 235 ADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSE 314 (671)
Q Consensus 235 AdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~e 314 (671)
.|.+|+....--+ .-+..+.+++++.|.++-+
T Consensus 110 vd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~---------------------------------- 141 (592)
T PRK09282 110 IDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQG---------------------------------- 141 (592)
T ss_pred CCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEE----------------------------------
Q ss_pred ccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhh
Q psy3862 315 VDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGD 394 (671)
Q Consensus 315 Vdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~ 394 (671)
-|+...+...+.+.-..++
T Consensus 142 --------------------~i~~t~~p~~t~~~~~~~a----------------------------------------- 160 (592)
T PRK09282 142 --------------------TISYTTSPVHTIEKYVELA----------------------------------------- 160 (592)
T ss_pred --------------------EEEeccCCCCCHHHHHHHH-----------------------------------------
Q ss_pred HHHHHHcCCcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEE
Q psy3862 395 VAKAMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFV 465 (671)
Q Consensus 395 ~~~l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V 465 (671)
.++.++|+|.|+|-+++ ...-...-++++.++..++ .--+++-|- +.|. ...+.-.++++|||.|
T Consensus 161 -~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~---~pi~~H~Hn-t~Gl-a~An~laAv~aGad~v 226 (592)
T PRK09282 161 -KELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD---LPVQLHSHC-TSGL-APMTYLKAVEAGVDII 226 (592)
T ss_pred -HHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC---CeEEEEEcC-CCCc-HHHHHHHHHHhCCCEE
No 461
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=55.25 E-value=2e+02 Score=30.91 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHh-CCCceEEEEEec----------------
Q psy3862 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREM-YPKHVIIAGNVV---------------- 169 (671)
Q Consensus 107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~-~P~~~li~g~v~---------------- 169 (671)
|+.+-.... +++.+.+.+.. +.+.+-+|..+-..+..++..+++++. .+....+.+-+.
T Consensus 79 PV~lHLDH~--~~~~i~~ai~~--GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t 154 (293)
T PRK07315 79 PVAIHLDHG--HYEDALECIEV--GYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELA 154 (293)
T ss_pred cEEEECCCC--CHHHHHHHHHc--CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCC
Q ss_pred cHHHHHHHHHCCCcEEEEC--cCCCceEEEEecccCCcchhhhhcc---c-cC---CccccccHHHHHHHHHcCCCEEEE
Q psy3862 170 TGEMVEELILSGADVIKVG--IGPGSVCTTRLKNKTSDFFLIQFYS---C-IP---QAGNVVTGEMVEELILSGADVIKV 240 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVd--ga~G~~~~t~v~~~~~~~~~i~~i~---~-~p---~aGnV~t~~~a~~li~aGAdgvkV 240 (671)
+++.|+++++.|+|+|-+. ..|| ........-++..++.+. . +| ++|-=.+-+.++.+++.|++.|=|
T Consensus 155 ~peea~~f~~tgvD~LAv~iG~vHG---~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 155 PIEDAKAMVETGIDFLAAGIGNIHG---PYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CHHHHHHHHHcCCCEEeeccccccc---cCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Q ss_pred c
Q psy3862 241 G 241 (671)
Q Consensus 241 G 241 (671)
+
T Consensus 232 ~ 232 (293)
T PRK07315 232 N 232 (293)
T ss_pred c
No 462
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=55.05 E-value=37 Score=34.83 Aligned_cols=64 Identities=27% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhh-hhcc--ccC------Ccccc------ccHHHHHHHHHcCC-
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLI-QFYS--CIP------QAGNV------VTGEMVEELILSGA- 235 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i-~~i~--~~p------~aGnV------~t~~~a~~li~aGA- 235 (671)
..++.+.++|+|+|+...+..+..+. .+...+ +.+. ..| ++||+ -+.+.+.+++++||
T Consensus 150 ~a~ria~e~GaD~vKt~tg~~~~~t~------~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~ 223 (236)
T PF01791_consen 150 RAARIAAELGADFVKTSTGKPVGATP------EDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGAD 223 (236)
T ss_dssp HHHHHHHHTT-SEEEEE-SSSSCSHH------HHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHS
T ss_pred HHHHHHHHhCCCEEEecCCccccccH------HHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCCh
Confidence 44667789999999987652111000 000000 1111 123 69999 99999999999999
Q ss_pred -CEEEEc
Q psy3862 236 -DVIKVG 241 (671)
Q Consensus 236 -dgvkVG 241 (671)
-|+-.|
T Consensus 224 ~~G~~~G 230 (236)
T PF01791_consen 224 RIGTSSG 230 (236)
T ss_dssp EEEEEEH
T ss_pred hHHHHHH
Confidence 566555
No 463
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=54.91 E-value=1.2e+02 Score=31.78 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEecc------------------------HHHHH
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVT------------------------GEMVE 175 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t------------------------~e~a~ 175 (671)
+-++.++++ +++.|.++.. ....++++.+++.. ..+++.... .++++
T Consensus 93 ~~~~~l~~a--Ga~gv~iED~----~~~~~~i~ai~~a~---i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 93 ELAKTFMRA--GAAGVKIEGG----EWHIETLQMLTAAA---VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred HHHHHHHHc--CCcEEEEcCc----HHHHHHHHHHHHcC---CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 456677776 8888888743 34556666665432 233343221 37788
Q ss_pred HHHHCCCcEEEEC
Q psy3862 176 ELILSGADVIKVG 188 (671)
Q Consensus 176 ~Li~AGaD~IvVd 188 (671)
++.+||||.|.+.
T Consensus 164 ay~~AGAd~i~~e 176 (240)
T cd06556 164 AYAPAGADLIVME 176 (240)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999885
No 464
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=54.89 E-value=34 Score=37.41 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=49.1
Q ss_pred cHHHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccCCccccc-cHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 170 TGEMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIPQAGNVV-TGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 170 t~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p~aGnV~-t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
|.++.++|.++|+|.+.+..-.=-. ...+++++. .+|..+-+= +++-+...++.|+|.+|+- ||-
T Consensus 38 Tv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~----------~vPLVaDiHf~~rla~~~~~~g~~k~RIN--PGN 105 (361)
T COG0821 38 TVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRL----------NVPLVADIHFDYRLALEAAECGVDKVRIN--PGN 105 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhC----------CCCEEEEeeccHHHHHHhhhcCcceEEEC--Ccc
Confidence 4577888899999999773311000 011122211 245444443 6888999999999999976 554
Q ss_pred ccccceecccCcchhhhHHHHHHH
Q psy3862 247 VCTTRLKTGVGYPQFSAVLECADA 270 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~~~~~~~~~~~ 270 (671)
+---+ ++..|.+||+.
T Consensus 106 ig~~~--------~v~~vVe~Ak~ 121 (361)
T COG0821 106 IGFKD--------RVREVVEAAKD 121 (361)
T ss_pred cCcHH--------HHHHHHHHHHH
Confidence 42222 77777777753
No 465
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=54.73 E-value=52 Score=34.38 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHCCCcEEEECcCC-CceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 169 VTGEMVEELILSGADVIKVGIGP-GSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 169 ~t~e~a~~Li~AGaD~IvVdga~-G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+.-.+++|.++|+-+|-=-+++ |++ +. ..+-+-++++ . .+| +--||++...+..+|++|+|+|.+-
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGSg----~G--~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGSG----LG--LQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccCC----cC--cCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 46788999999999998533322 110 00 0011112222 1 356 6788999999999999999999887
No 466
>PLN02428 lipoic acid synthase
Probab=54.65 E-value=2.6e+02 Score=30.95 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHhCCCceEEEE---EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccc
Q psy3862 144 TQTFVDFVRRIREMYPKHVIIAG---NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGN 220 (671)
Q Consensus 144 ~~~~~~~ik~lr~~~P~~~li~g---~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGn 220 (671)
...+.+.++.+++..|...+.+- -..+.+.++.|.++|.|.+- |+.-.+.++.+. +.-.
T Consensus 165 a~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~----hnlETv~rL~~~--------------Ir~~ 226 (349)
T PLN02428 165 SGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFA----HNIETVERLQRI--------------VRDP 226 (349)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEc----cCccCcHHHHHH--------------hcCC
Confidence 46788888888887886433331 22478999999999999982 221011111111 1112
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862 221 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280 (671)
Q Consensus 221 V~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~ 280 (671)
-.+++...++++.=.. ..||-.-.|-.+.|.| =.-.-+.+..+..+++++.++.
T Consensus 227 ~~sye~~Le~L~~ak~-----~~pGi~tkSg~MvGLG-ET~Edv~e~l~~Lrelgvd~vt 280 (349)
T PLN02428 227 RAGYKQSLDVLKHAKE-----SKPGLLTKTSIMLGLG-ETDEEVVQTMEDLRAAGVDVVT 280 (349)
T ss_pred CCCHHHHHHHHHHHHH-----hCCCCeEEEeEEEecC-CCHHHHHHHHHHHHHcCCCEEe
Confidence 2466777776642111 1233221255677886 5667788888888887765544
No 467
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=54.38 E-value=45 Score=36.01 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHcCCcEEEEcccc--ccccccccccccccccccccccccccccC-ceeeccccCchhHHHHH--HcCCcEEEECc
Q psy3862 398 AMGAGADFVMLGGMF--AGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAM--GAGADFVMLGG 469 (671)
Q Consensus 398 l~~aG~d~i~id~~a--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l--~aGAd~V~vG~ 469 (671)
+.++|++.|.|.+-. ..|.. ..++ ..+..+++-++ .++.-|.+.+.+-++.+ .+|+|+||+|.
T Consensus 147 l~~~G~~~i~vH~Rt~~q~~~~-~a~w--------~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 147 LEDAGVSAITVHGRTRKQRYKG-PADW--------EAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHTT--EEEEECS-TTCCCTS----H--------HHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESH
T ss_pred hhhcccceEEEecCchhhcCCc-ccch--------HHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEch
Confidence 367899999997532 22221 1111 11122222222 25666677888777754 56999999997
No 468
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.37 E-value=2.4e+02 Score=32.53 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEECcCCCc
Q psy3862 120 AGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKVGIGPGS 193 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvVdga~G~ 193 (671)
+.++++.+. +++.|++...-|. |....++++.+++ .+...+-.-...| .....+++++|||.|....++
T Consensus 167 ~~a~~l~~~--Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g-- 241 (468)
T PRK12581 167 SLVKELVEM--GADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSP-- 241 (468)
T ss_pred HHHHHHHHc--CCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccc--
Confidence 345566666 7888888777675 5677788888876 4443332222222 355667889999998543221
Q ss_pred eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHc
Q psy3862 194 VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS 233 (671)
Q Consensus 194 ~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~a 233 (671)
+. +-+||..|-.-+.+|-..
T Consensus 242 -----~g---------------~gagN~~tE~lv~~L~~~ 261 (468)
T PRK12581 242 -----FS---------------EGTSQPATESMYLALKEA 261 (468)
T ss_pred -----cC---------------CCcCChhHHHHHHHHHhc
Confidence 00 136788777777665544
No 469
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.31 E-value=1.2e+02 Score=32.50 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEECcCCCce
Q psy3862 121 GLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKVGIGPGSV 194 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvVdga~G~~ 194 (671)
.++.+.+. +++.|.+...-|. |....++++.+++.+|...+-.-.-.+ ...+.+.+++|||.|.....+
T Consensus 160 ~~~~~~~~--G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~G--- 234 (287)
T PRK05692 160 VAERLFAL--GCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGG--- 234 (287)
T ss_pred HHHHHHHc--CCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccc---
Confidence 34555555 6788877666565 677888899988888754432222222 356667889999998443211
Q ss_pred EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHc
Q psy3862 195 CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILS 233 (671)
Q Consensus 195 ~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~a 233 (671)
+.. -| .-| .+||..|-+-+..|-..
T Consensus 235 ----lGe-cp---------fa~g~aGN~~~E~lv~~L~~~ 260 (287)
T PRK05692 235 ----LGG-CP---------YAPGASGNVATEDVLYMLHGL 260 (287)
T ss_pred ----cCC-CC---------CCCCccccccHHHHHHHHHhc
Confidence 100 00 012 47899888887777544
No 470
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=54.12 E-value=1e+02 Score=34.89 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=31.6
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCCccccceecccC-cchhhhHHHHHHHhhhcC
Q psy3862 223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG-YPQFSAVLECADAAHGLG 275 (671)
Q Consensus 223 t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~-~~~~~~~~~~~~~~~~~~ 275 (671)
-.+...+++.+|++.+-+=+...-.+-+...- .- -=.+.-+.++.++|+.+|
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~-~t~~e~l~~~~~~v~ya~~~g 130 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLK-KTREEVLERAVDAVEYARDHG 130 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcC
Confidence 34588899999999987765554443322221 11 113455667777887654
No 471
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=53.90 E-value=1.4e+02 Score=31.37 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=44.8
Q ss_pred EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c-c-CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C-I-PQAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~-~-p~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
-+.+.+.++..+++|+++|-|.--.=+ |.-.+...+..+.+++. . + ...+||-|.+.+..+..+ +||+.||
T Consensus 157 EVh~~~El~~a~~~ga~iiGINnRdL~---t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG 230 (247)
T PRK13957 157 EVHTEDEAKLALDCGAEIIGINTRDLD---TFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIG 230 (247)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEEC
Confidence 467899999999999999955321111 10000000112222221 1 1 157999999999999887 9999999
No 472
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=53.83 E-value=30 Score=35.97 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=60.9
Q ss_pred CHHHHHHHHHcCCeEEEccCC---CHHHHHHHHhcCcccccceeeecccC----hhhHHHHHHcCCcEEEEccccccccc
Q psy3862 345 TFEMAKHLAKHGLFTTIHKYY---TLEEWKAFAVQNPDVIKHVADGGCTS----PGDVAKAMGAGADFVMLGGMFAGHDQ 417 (671)
Q Consensus 345 ~~~mA~~la~~Gglgvihr~~---~~e~~~~~v~~~~~~~~~v~~~~~~~----~~~~~~l~~aG~d~i~id~~a~gh~~ 417 (671)
..+....+++.|.=-+.-..+ .+.+..+.+++.- ..+.++-..+ .+.++.+++ -+|.+.|=.+-.|+.-
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g---~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgG 155 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQK---TTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGT 155 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCC---CCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCC
Confidence 345677888888654444444 3555666665531 1012222222 366666655 3888888745457652
Q ss_pred c-ccccccccccccccccccccccC----c---eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862 418 S-GGELTNIEYMFFPLVGDMNSYLG----G---VVDGGCTSPGDVAKAMGAGADFVMLGG 469 (671)
Q Consensus 418 ~-~~~~~~~~~~~~~~~~~~~~~~~----~---~i~gG~v~t~~~a~~l~aGAd~V~vG~ 469 (671)
+ ... ..+.-+..++++++ + -+||| +...++.++.++|||.+.+|.
T Consensus 156 Q~f~~------~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ti~~l~~aGaD~~V~GS 208 (228)
T PRK08091 156 KAPSD------LILDRVIQVENRLGNRRVEKLISIDGS-MTLELASYLKQHQIDWVVSGS 208 (228)
T ss_pred ccccH------HHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHCCCCEEEECh
Confidence 1 111 11111222232221 1 46888 455666667899999998874
No 473
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=53.63 E-value=58 Score=37.91 Aligned_cols=197 Identities=19% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCce-----EEEEecccC-CcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSV-----CTTRLKNKT-SDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPG 245 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~-~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~ 245 (671)
+-++.|.++|+|.|-+ |.++.+ ..+++.+.. .+..+.-+.......=....-+.+.+++++|++.|++.+...
T Consensus 31 ~ia~~L~~~Gvd~IEv-G~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~S 109 (524)
T PRK12344 31 RIARKLDELGVDYIEG-GWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSW 109 (524)
T ss_pred HHHHHHHHcCCCEEEE-cCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEEEEECCC
Q ss_pred CccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeecc
Q psy3862 246 SVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRN 325 (671)
Q Consensus 246 ~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~ 325 (671)
-.......-----=.+.-+.++.+.|+++|
T Consensus 110 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~G-------------------------------------------------- 139 (524)
T PRK12344 110 DLHVTEALRTTLEENLAMIRDSVAYLKAHG-------------------------------------------------- 139 (524)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--------------------------------------------------
Q ss_pred CCceeeCcceEecCC---CC-CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHc
Q psy3862 326 SGKTYQGVPIIAANM---DT-VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGA 401 (671)
Q Consensus 326 s~~~~~~iPiIaa~M---Dt-V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~a 401 (671)
..+.-++| |. -++++....++ ..+.++
T Consensus 140 -------~~v~~~~e~~~Da~r~d~~~l~~~~------------------------------------------~~~~~~ 170 (524)
T PRK12344 140 -------REVIFDAEHFFDGYKANPEYALATL------------------------------------------KAAAEA 170 (524)
T ss_pred -------CeEEEccccccccccCCHHHHHHHH------------------------------------------HHHHhC
Q ss_pred CCcEEEEcccc-ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862 402 GADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473 (671)
Q Consensus 402 G~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G 473 (671)
|+|.|+|-++. .-.-....++++.++..+ +..-++..|- +=| ..+.+.-.++.+||+.|=.-+.|=|
T Consensus 171 Gad~i~l~DTvG~~~P~~v~~li~~l~~~~---~v~i~~H~HN-D~G-lA~ANslaAi~aGa~~Vd~Tl~GlG 238 (524)
T PRK12344 171 GADWVVLCDTNGGTLPHEVAEIVAEVRAAP---GVPLGIHAHN-DSG-CAVANSLAAVEAGARQVQGTINGYG 238 (524)
T ss_pred CCCeEEEccCCCCcCHHHHHHHHHHHHHhc---CCeEEEEECC-CCC-hHHHHHHHHHHhCCCEEEEeccccc
No 474
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=53.35 E-value=3.9 Score=44.04 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhH
Q psy3862 461 GADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRS 540 (671)
Q Consensus 461 GAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~a 540 (671)
..|.+||-==||| +.|.. .++-|.|+|.+-|++. +++|. .=|+++|+|.-+|+-+|
T Consensus 123 dvdV~MVAPKgPG------~~VR~---~y~~G~GvP~LiAV~q---------D~sG~------a~~~Ala~AkgiGg~Ra 178 (338)
T COG0059 123 DVDVIMVAPKGPG------HLVRR---EYKEGFGVPALIAVHQ---------DASGK------ALDIALAYAKGIGGTRA 178 (338)
T ss_pred cCcEEEEcCCCCc------HHHHH---HHHccCCceeEEEEEe---------CCCch------HHHHHHHHHHhcCCCcc
Confidence 4689999743444 43321 2567899999888753 23442 23677788888888887
Q ss_pred hccc
Q psy3862 541 ACTY 544 (671)
Q Consensus 541 g~~e 544 (671)
|--|
T Consensus 179 Gvie 182 (338)
T COG0059 179 GVIE 182 (338)
T ss_pred ceEe
Confidence 7643
No 475
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=53.19 E-value=53 Score=34.84 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE
Q psy3862 344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML 408 (671)
Q Consensus 344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i 408 (671)
-+.+-|.+-.+.|.=.+.--++++|+..+.++..+.. ..+.++||++.+.+..+.++|+|.|.+
T Consensus 186 ~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~~~~-ipi~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 186 ESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLLKGR-VLLEASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCC-CcEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3567777778888877777889999888887654332 247789999999999999999999998
No 476
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=53.03 E-value=1.9e+02 Score=31.09 Aligned_cols=180 Identities=19% Similarity=0.117 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHc---------CCCEEEEcccCCCccccceecccCcch--hhhHHHHHHHhhhcCCcchhhhhhccce
Q psy3862 220 NVVTGEMVEELILS---------GADVIKVGIGPGSVCTTRLKTGVGYPQ--FSAVLECADAAHGLGGHIISFLTAMAQK 288 (671)
Q Consensus 220 nV~t~~~a~~li~a---------GAdgvkVG~~~~~~~~Tr~V~gv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (671)
|+-|+-.|+.+-++ |.+++++. |.+.+ +..|+|- +-..-|-.+.++.-
T Consensus 15 ~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~s----s~~~a---~s~G~pD~~~~~~~e~~~~~~~I-------------- 73 (285)
T TIGR02320 15 EAHNGLSALIAEEARVEVGGESLGFDGIWSS----SLTDS---TSRGVPDIEEASWTQRLDVVEFM-------------- 73 (285)
T ss_pred cCcCHHHHHHHHHhhhcccCcCCCcCEEEec----hHHHH---HHCCCCCcCcCCHHHHHHHHHHH--------------
Q ss_pred eeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHH----HHHHHHcCCeEEEc--
Q psy3862 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM----AKHLAKHGLFTTIH-- 362 (671)
Q Consensus 289 i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~m----A~~la~~Gglgvih-- 362 (671)
.-...+||++ ..|+=++++. ...+.+.|.-|+.=
T Consensus 74 ---------------------------------------~~a~~~Pv~~-D~d~Gg~~~~v~r~V~~l~~aGvaGi~iED 113 (285)
T TIGR02320 74 ---------------------------------------FDVTTKPIIL-DGDTGGNFEHFRRLVRKLERRGVSAVCIED 113 (285)
T ss_pred ---------------------------------------HhhcCCCEEE-ecCCCCCHHHHHHHHHHHHHcCCeEEEEec
Q ss_pred ----------------cCCCHHHHHHHHhcC------ccccccee-----eecccCh--hhHHHHHHcCCcEEEEccccc
Q psy3862 363 ----------------KYYTLEEWKAFAVQN------PDVIKHVA-----DGGCTSP--GDVAKAMGAGADFVMLGGMFA 413 (671)
Q Consensus 363 ----------------r~~~~e~~~~~v~~~------~~~~~~v~-----~~~~~~~--~~~~~l~~aG~d~i~id~~a~ 413 (671)
.-.|+|++++.++.. ++++-..+ ...+..+ ++.....+||||.+++. .-.
T Consensus 114 q~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~-~~~ 192 (285)
T TIGR02320 114 KLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH-SRK 192 (285)
T ss_pred cCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec-CCC
Q ss_pred cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862 414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG 468 (671)
Q Consensus 414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG 468 (671)
-..+....+.+.+...||.+ +-++..+.--.-...++-+.|++.|..|
T Consensus 193 ~~~~ei~~~~~~~~~~~p~~-------pl~~~~~~~~~~~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 193 KDPDEILEFARRFRNHYPRT-------PLVIVPTSYYTTPTDEFRDAGISVVIYA 240 (285)
T ss_pred CCHHHHHHHHHHhhhhCCCC-------CEEEecCCCCCCCHHHHHHcCCCEEEEh
No 477
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.46 E-value=96 Score=35.68 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEE
Q psy3862 120 AGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKV 187 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvV 187 (671)
+.++++.++ +++.|++...-|. |....++++.+|+.++ ..+-.-...| ...+.+++++|||.|..
T Consensus 157 ~~a~~l~~~--Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 157 EFARELVDM--GVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred HHHHHHHHc--CCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 345556666 7888888777776 5777888888887775 2222212222 35566778999999844
No 478
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=52.19 E-value=1.1e+02 Score=35.65 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCCcceeeeeeecccCCCcccCceEEecCCCccc-cHHHHHHHHHcCCeEEeecC--CCHHHH
Q psy3862 35 SRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-TFEMAKHLAKHGLFTTIHKY--YTLEEW 94 (671)
Q Consensus 35 ~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~~~lA~Ala~~gglgvIh~n--~~~Eeq 94 (671)
|.-.+-++|.|| ++.=..||+-+.|+-.| +.++..|.|++|--.=+..+ .++|-.
T Consensus 18 ~~Gr~~v~Tkfs-----rLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~ 75 (717)
T COG4981 18 PDGRVKVSTKFS-----RLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIF 75 (717)
T ss_pred CCCcEEEeechh-----hhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHH
Confidence 446778889887 34446899999999876 78888888888744333332 555543
No 479
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=52.05 E-value=25 Score=37.15 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHhCC--CceE---EEEEeccHH----HHHHHHHCCCcEEEE
Q psy3862 120 AGLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREMYP--KHVI---IAGNVVTGE----MVEELILSGADVIKV 187 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~~P--~~~l---i~g~v~t~e----~a~~Li~AGaD~IvV 187 (671)
.+++..++...++--+++|... |..+.+.+-++.+++... ...+ ..+-....+ ..+.++++|||+|+-
T Consensus 87 ~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 87 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 3455566653222224444322 233444455555554322 2122 222233332 455778999999988
Q ss_pred CcCCCce-EEEEecccCCcchhh-hhcc------c--cCCccccccHHHHHHHHHcCCC
Q psy3862 188 GIGPGSV-CTTRLKNKTSDFFLI-QFYS------C--IPQAGNVVTGEMVEELILSGAD 236 (671)
Q Consensus 188 dga~G~~-~~t~v~~~~~~~~~i-~~i~------~--~p~aGnV~t~~~a~~li~aGAd 236 (671)
.++-+.. .+- .++.++ +.+. . +=++|||-|.+++++++++|.+
T Consensus 167 STGf~~~gAt~------edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 167 STGKVPVNATL------EAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred CCCCCCCCCCH------HHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 6643211 000 011110 0000 0 1179999999999999999854
No 480
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.87 E-value=44 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHHcCCeEEEc--cCCCHHHHHHHHhc
Q psy3862 348 MAKHLAKHGLFTTIH--KYYTLEEWKAFAVQ 376 (671)
Q Consensus 348 mA~~la~~Gglgvih--r~~~~e~~~~~v~~ 376 (671)
|...+.+..|+-+++ .+.++|++.+.+.+
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~ 52 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIE 52 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 445677778888888 56777777777654
No 481
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.73 E-value=30 Score=35.57 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=40.7
Q ss_pred ccChhhHHHHHHcCCcEEEEccccccccc-----cccccccccccccccccccccc--cCceeeccccCchhHHHHHHcC
Q psy3862 389 CTSPGDVAKAMGAGADFVMLGGMFAGHDQ-----SGGELTNIEYMFFPLVGDMNSY--LGGVVDGGCTSPGDVAKAMGAG 461 (671)
Q Consensus 389 ~~~~~~~~~l~~aG~d~i~id~~a~gh~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~i~gG~v~t~~~a~~l~aG 461 (671)
..+.++..+..+.|+|++.+.-+.. -++ ..++. +.|+++. ++-+-+|| +...++...+++|
T Consensus 118 ~~s~~~a~~A~~~gaDYv~~Gpv~t-~tK~~~~p~gl~~----------l~~~~~~~~iPvvAIGG-I~~~n~~~~~~~G 185 (221)
T PRK06512 118 LRDRHGAMEIGELRPDYLFFGKLGA-DNKPEAHPRNLSL----------AEWWAEMIEIPCIVQAG-SDLASAVEVAETG 185 (221)
T ss_pred CCCHHHHHHhhhcCCCEEEECCCCC-CCCCCCCCCChHH----------HHHHHHhCCCCEEEEeC-CCHHHHHHHHHhC
Confidence 3455666666678999999973321 011 01112 2222222 22255788 4788888899999
Q ss_pred CcEEEEC
Q psy3862 462 ADFVMLG 468 (671)
Q Consensus 462 Ad~V~vG 468 (671)
|++|-|-
T Consensus 186 A~giAvi 192 (221)
T PRK06512 186 AEFVALE 192 (221)
T ss_pred CCEEEEh
Confidence 9999775
No 482
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=51.50 E-value=1.2e+02 Score=35.35 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCC-CceEEEEEecc----HHHHHHHHHCCCcEEEE
Q psy3862 121 GLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYP-KHVIIAGNVVT----GEMVEELILSGADVIKV 187 (671)
Q Consensus 121 rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P-~~~li~g~v~t----~e~a~~Li~AGaD~IvV 187 (671)
.++++.+. +++.|++...-|. |....++++.+++.+| ...+-.-...| .....+++++|||.|..
T Consensus 160 ~a~~l~~~--Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 160 QAKRLLDM--GADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred HHHHHHHc--CCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 45556666 7888888776675 5777888999888875 44433222222 35566789999999854
No 483
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.41 E-value=1.5e+02 Score=30.93 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=55.6
Q ss_pred ChhhH-HHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEE-ecc----HHHHHHHHHCCCcEEE
Q psy3862 115 SAKDL-AGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGN-VVT----GEMVEELILSGADVIK 186 (671)
Q Consensus 115 ~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~-v~t----~e~a~~Li~AGaD~Iv 186 (671)
+++.+ +.++.+.+. +++.|.+....|. |..+.++++.+++.+|. ..+.-. -.| ...+.+.+++|||.|.
T Consensus 139 ~~~~~~~~~~~~~~~--G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd 215 (263)
T cd07943 139 SPEELAEQAKLMESY--GADCVYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHNNLGLAVANSLAAVEAGATRID 215 (263)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCcchHHHHHHHHHHhCCCEEE
Confidence 44433 334445555 6677877666665 67788888988888775 223322 222 2556677899999984
Q ss_pred ECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHH
Q psy3862 187 VGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELIL 232 (671)
Q Consensus 187 Vdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~ 232 (671)
....+ +.. -+||..|-+-+..|-.
T Consensus 216 ~s~~G-------lG~---------------~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 216 GSLAG-------LGA---------------GAGNTPLEVLVAVLER 239 (263)
T ss_pred eeccc-------ccC---------------CcCCccHHHHHHHHHh
Confidence 42211 110 2788888777766533
No 484
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=51.41 E-value=74 Score=35.24 Aligned_cols=136 Identities=22% Similarity=0.261 Sum_probs=75.7
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHh-----CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREM-----YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~-----~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~ 194 (671)
+.+.++-++ +.+.+=+... ...-.+.++++++. .| .++++--..+...|...+++ +|-|.+-
T Consensus 35 ~QI~~L~~a--GceivRvavp---~~~~a~al~~I~~~l~~~g~~-iPlVADIHFd~~lAl~a~~~-v~kiRIN------ 101 (359)
T PF04551_consen 35 AQIKRLEEA--GCEIVRVAVP---DMEAAEALKEIKKRLRALGSP-IPLVADIHFDYRLALEAIEA-VDKIRIN------ 101 (359)
T ss_dssp HHHHHHHHC--T-SEEEEEE----SHHHHHHHHHHHHHHHCTT-S-S-EEEEESTTCHHHHHHHHC--SEEEE-------
T ss_pred HHHHHHHHc--CCCEEEEcCC---CHHHHHHHHHHHHhhccCCCC-CCeeeecCCCHHHHHHHHHH-hCeEEEC------
Confidence 456667776 6666543322 23444555555544 44 45666555788899999999 9999762
Q ss_pred EEEEecccCCcchhhhhccccCCcccc--------cc-HHHHHHHHHcCC---CEEEEcccCCCccccceecccCcchhh
Q psy3862 195 CTTRLKNKTSDFFLIQFYSCIPQAGNV--------VT-GEMVEELILSGA---DVIKVGIGPGSVCTTRLKTGVGYPQFS 262 (671)
Q Consensus 195 ~~t~v~~~~~~~~~i~~i~~~p~aGnV--------~t-~~~a~~li~aGA---dgvkVG~~~~~~~~Tr~V~gv~~~~~~ 262 (671)
=||+ .. .+-.+..+++-- -.+|||+..||.-- .+.---.|...
T Consensus 102 -----------------------PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~--~~~~ky~~t~~ 156 (359)
T PF04551_consen 102 -----------------------PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEK--DILEKYGPTPE 156 (359)
T ss_dssp -----------------------TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-H--HHHHHHCHHHH
T ss_pred -----------------------CCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcH--HHHhhccchHH
Confidence 2555 34 444444443211 26899999999842 22111145555
Q ss_pred hHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862 263 AVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK 310 (671)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~ 310 (671)
|..+.|..- ++.=..++|+|+.|--|-|++.
T Consensus 157 amvesA~~~-----------------~~~le~~~f~~iviSlKsSdv~ 187 (359)
T PF04551_consen 157 AMVESALEH-----------------VRILEELGFDDIVISLKSSDVP 187 (359)
T ss_dssp HHHHHHHHH-----------------HHHHHHCT-GGEEEEEEBSSHH
T ss_pred HHHHHHHHH-----------------HHHHHHCCCCcEEEEEEeCChH
Confidence 655554211 1122457899999988887766
No 485
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=51.19 E-value=47 Score=37.35 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCceEEEeeccCCCC--hHHHHHHHHHHHhCCCceEEEEEec----cHHHHHHHHHCCCcEEEECc
Q psy3862 120 AGLKEILAALPEIEYICLDVANGYT--QTFVDFVRRIREMYPKHVIIAGNVV----TGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 120 ~rl~~l~~a~~~~d~Ivld~a~G~~--~~~~~~ik~lr~~~P~~~li~g~v~----t~e~a~~Li~AGaD~IvVdg 189 (671)
+.++++.+. ++|.|++..+-|.+ ...-++++.+|+.+|. .+..-... ..-...+.++||||.|....
T Consensus 160 ~~akel~~~--g~DSIciKDmaGlltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 160 ELAKELLEM--GVDSICIKDMAGLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHHHHHHc--CCCEEEeecccccCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 456677777 88999999888874 5556788988888762 22222222 23455567899999996544
No 486
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=50.92 E-value=1.7e+02 Score=31.97 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG 241 (671)
+-++.|.++|+|+|.+.. |...... .....+..+.++ .+| +.|++- .+.+.++++.| ||.|-+|
T Consensus 245 ~~~~~l~~~g~d~i~vs~--g~~~~~~---~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 245 YLAKELNKRGLAYLHLVE--PRVAGNP---EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFG 314 (338)
T ss_pred HHHHHHHHcCCcEEEEec--CCCCCcc---cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeC
Confidence 556788889999998733 2210000 111222222232 246 689995 99999999976 9999666
No 487
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=50.85 E-value=12 Score=39.05 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=34.1
Q ss_pred HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-c--ccC--Cccccc--c----HHHHHHHHHcCCCEEEEc
Q psy3862 174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVV--T----GEMVEELILSGADVIKVG 241 (671)
Q Consensus 174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~--t----~~~a~~li~aGAdgvkVG 241 (671)
++...++|||+|......| +..+..+ . .+| ++||+- | .+.+..++++||+|+=+|
T Consensus 162 ~~~a~~~GADyikt~~~~~-------------~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g 227 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTGD-------------IDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVG 227 (258)
T ss_pred HHHHHHHCCCEEeccCCCC-------------HHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 4667789999998753211 1111111 1 245 679998 5 445556669999987555
No 488
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=50.78 E-value=1.5e+02 Score=31.50 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=42.5
Q ss_pred HHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEEEecc----HHHHHHHHHCCCcEEEE
Q psy3862 122 LKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAGNVVT----GEMVEELILSGADVIKV 187 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~Li~AGaD~IvV 187 (671)
++.+.+. +++.|.+....|. |..+.+.++.+++.+|...+-.-.-.+ ...+.+.+++|||.|..
T Consensus 155 ~~~~~~~--Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~ 224 (274)
T cd07938 155 AERLLDL--GCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDS 224 (274)
T ss_pred HHHHHHc--CCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 4445554 6777877666665 677888899988888764433322222 35667788999999854
No 489
>PRK09389 (R)-citramalate synthase; Provisional
Probab=50.58 E-value=91 Score=36.01 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccc--c-C--CccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC--I-P--QAGNVVTGEMVEELILSGADVIKVGIGPGS 246 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~--~-p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~ 246 (671)
+-++.|.++|+|.|-+.. +.++.. ++..+..+.. . + .+-.-...+....++++|++.|.+.+...-
T Consensus 28 ~ia~~L~~~Gv~~IE~G~-p~~~~~--------d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~~Sd 98 (488)
T PRK09389 28 EIARKLDELGVDVIEAGS-AITSEG--------EREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVHLVVPTSD 98 (488)
T ss_pred HHHHHHHHcCCCEEEEeC-CcCCHH--------HHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEEEEEccCH
Confidence 567788899999998743 211100 0000011100 0 0 233334467788999999999888863332
Q ss_pred ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862 247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG 275 (671)
Q Consensus 247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~ 275 (671)
. --+.+.+..+.+ +.-+.++.+.|+++|
T Consensus 99 ~-h~~~~l~~s~~e~l~~~~~~v~~ak~~g 127 (488)
T PRK09389 99 L-HIEYKLKKTREEVLETAVEAVEYAKDHG 127 (488)
T ss_pred H-HHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 2 222344444443 244556667776544
No 490
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=50.49 E-value=13 Score=38.58 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=24.4
Q ss_pred CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 217 QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 217 ~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
++|||-+.++++.++.+|||++-||
T Consensus 189 vGGGIrs~e~a~~~l~~GAD~VVVG 213 (232)
T PRK04169 189 YGGGIRSPEQARELMAAGADTIVVG 213 (232)
T ss_pred EECCCCCHHHHHHHHHhCCCEEEEC
Confidence 7999999999999999999999999
No 491
>KOG4175|consensus
Probab=50.24 E-value=3e+02 Score=28.45 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=71.5
Q ss_pred CCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEeecCCCHHHHH---HhhhcCcccccceEEecCCChhhHHH
Q psy3862 51 GKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHKYYTLEEWK---AFAVQNPDVIKHVAVSSGISAKDLAG 121 (671)
Q Consensus 51 ~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~n~~~Eeq~---~~i~~~p~~~~~~~v~~G~~~~d~~r 121 (671)
++-.+..||+- |++- +..+.-.-..++|.-|+|-...++||.. ++.+++....-|+ +++..+ .+|
T Consensus 90 r~~gvt~PIiL--mgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpL-vaPsTt---deR 163 (268)
T KOG4175|consen 90 RPQGVTCPIIL--MGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPL-VAPSTT---DER 163 (268)
T ss_pred cccCcccceee--eecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEe-eCCCCh---HHH
Confidence 35556778765 6552 2233333345666669888889999853 3344432222111 122222 356
Q ss_pred HHHHHHhCCCceEEEeeccCCC---C----hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862 122 LKEILAALPEIEYICLDVANGY---T----QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI 189 (671)
Q Consensus 122 l~~l~~a~~~~d~Ivld~a~G~---~----~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg 189 (671)
+..+.++. -.+|.+-..-|. . ..+-++++++|+.-.+..+.+| .+.++|..+..-.. +|-+++++
T Consensus 164 mell~~~a--dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGS 236 (268)
T KOG4175|consen 164 MELLVEAA--DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGS 236 (268)
T ss_pred HHHHHHhh--cceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecH
Confidence 66666652 234433333232 2 3344455555553224445556 56899999988777 89998843
No 492
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=50.05 E-value=32 Score=35.89 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCcEEEE-CcCCCceEEEEeccc-CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEccc
Q psy3862 171 GEMVEELILSGADVIKV-GIGPGSVCTTRLKNK-TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIG 243 (671)
Q Consensus 171 ~e~a~~Li~AGaD~IvV-dga~G~~~~t~v~~~-~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~ 243 (671)
.+.|++--+.|||=++. |+ |...+. .+.+.++.-.. .+| ++|||-+-+.++.++.+|||=|-|.
T Consensus 33 VelA~~Y~e~GADElvFlDI-------tAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSIN-- 103 (256)
T COG0107 33 VELAKRYNEEGADELVFLDI-------TASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSIN-- 103 (256)
T ss_pred HHHHHHHHHcCCCeEEEEec-------ccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeC--
Confidence 37788888999997653 33 111111 12222222221 257 8999999999999999999987666
Q ss_pred CCCccccceecccCcchhhhHHHHHHHhhhcCCcch
Q psy3862 244 PGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279 (671)
Q Consensus 244 ~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~ 279 (671)
-.++-.|++ |.+.| +..|..-|
T Consensus 104 ---------saAv~~p~l--I~~~a---~~FGsQci 125 (256)
T COG0107 104 ---------SAAVKDPEL--ITEAA---DRFGSQCI 125 (256)
T ss_pred ---------hhHhcChHH--HHHHH---HHhCCceE
Confidence 456777874 44444 44554433
No 493
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=50.03 E-value=33 Score=36.21 Aligned_cols=57 Identities=11% Similarity=-0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCcEEEECcCCCceEEEEeccc-CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 172 EMVEELILSGADVIKVGIGPGSVCTTRLKNK-TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~-~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
+.|+...++|++.| ++.+. .++..++..+. .+| ++|||-+ +.++.++++||+.|-+|
T Consensus 42 ~~A~~~~~~Ga~~l------------HvVDLg~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 42 YYAKLYKDDGVKGC------------HVIMLGPNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHHHHcCCCEE------------EEEECCCCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEEC
No 494
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=49.99 E-value=52 Score=33.92 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=45.5
Q ss_pred CChhhHHHHHH-HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC--CCceEEEEEeccHHHHHHHHHCCCcEE
Q psy3862 114 ISAKDLAGLKE-ILAALPEIEYICLDVANGYTQTFVDFVRRIREMY--PKHVIIAGNVVTGEMVEELILSGADVI 185 (671)
Q Consensus 114 ~~~~d~~rl~~-l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~--P~~~li~g~v~t~e~a~~Li~AGaD~I 185 (671)
++.+++.++.+ .+++ ++|+|-.++..+......+.++.+++.. ....+.+|.+.|.+++..++++|||.|
T Consensus 133 L~~e~i~~a~~~~~~a--gadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 133 LTDEEKVKACEIAKEA--GADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred CCHHHHHHHHHHHHHh--CCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 56556655544 4555 7787766655432222344444444432 234677888999999999999999999
No 495
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=49.88 E-value=67 Score=28.75 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=32.5
Q ss_pred eEEEeec-cCCCChHHHHHHHHHHHhCCCceEEEEEe-ccHHHHHHHHH-CCCcEEEEC
Q psy3862 133 EYICLDV-ANGYTQTFVDFVRRIREMYPKHVIIAGNV-VTGEMVEELIL-SGADVIKVG 188 (671)
Q Consensus 133 d~Ivld~-a~G~~~~~~~~ik~lr~~~P~~~li~g~v-~t~e~a~~Li~-AGaD~IvVd 188 (671)
+.+.+.. ...+.....+.++.+|+..|+..+++|.. .+...-+.|.+ .|+|+++.+
T Consensus 53 d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 53 DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCC
Confidence 4555554 22223445566666666788877776654 45433333334 899999763
No 496
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=49.86 E-value=1.5e+02 Score=31.64 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCeEEEccC--CCHHHHHHHHh
Q psy3862 346 FEMAKHLAKHGLFTTIHKY--YTLEEWKAFAV 375 (671)
Q Consensus 346 ~~mA~~la~~Gglgvihr~--~~~e~~~~~v~ 375 (671)
+++.+++++.|----|-|- .+||||..-+.
T Consensus 114 ~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aae 145 (264)
T PRK05198 114 TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVD 145 (264)
T ss_pred HHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 5788888888776666664 89999988764
No 497
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=49.65 E-value=97 Score=30.97 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCce----------------------EEEEEeccHHHH
Q psy3862 118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHV----------------------IIAGNVVTGEMV 174 (671)
Q Consensus 118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~----------------------li~g~v~t~e~a 174 (671)
++....+.+...-..-++++|.-+|.. +.-..++.+++.. |++. -+.-..+-....
T Consensus 36 ~ik~ivk~lK~~gK~vfiHvDLv~Gl~-~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~~~~aIqR~FilDS~Al~~~~ 114 (181)
T COG1954 36 NIKEIVKKLKNRGKTVFIHVDLVEGLS-NDEVAIEFIKEVIKPDGIISTKSNVIKKAKKLGILAIQRLFILDSIALEKGI 114 (181)
T ss_pred hHHHHHHHHHhCCcEEEEEeHHhcccC-CchHHHHHHHHhccCCeeEEccHHHHHHHHHcCCceeeeeeeecHHHHHHHH
Q ss_pred HHHHHCCCcEEEECcCCCceEEEEecccC-Ccchhhhhcc---ccC-Cccccc-cHHHHHHHHHcCCCEE
Q psy3862 175 EELILSGADVIKVGIGPGSVCTTRLKNKT-SDFFLIQFYS---CIP-QAGNVV-TGEMVEELILSGADVI 238 (671)
Q Consensus 175 ~~Li~AGaD~IvVdga~G~~~~t~v~~~~-~~~~~i~~i~---~~p-~aGnV~-t~~~a~~li~aGAdgv 238 (671)
+...+...|+| ++.+.. |. +++-+. .+| +|||.. |-+.+.+++.+||-+|
T Consensus 115 ~~i~~~~pD~i------------EvLPGv~Pk--vi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 115 KQIEKSEPDFI------------EVLPGVMPK--VIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred HHHHHcCCCEE------------EEcCcccHH--HHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEE
No 498
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=49.60 E-value=12 Score=38.90 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.3
Q ss_pred CccccccHHHHHHHHHcCCCEEEEc
Q psy3862 217 QAGNVVTGEMVEELILSGADVIKVG 241 (671)
Q Consensus 217 ~aGnV~t~~~a~~li~aGAdgvkVG 241 (671)
.+|||-+.++++.+.++|||.|-||
T Consensus 187 vGGGIrs~e~A~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 187 VGGGIRSPEQAREMAEAGADTIVVG 211 (230)
T ss_dssp EESS--SHHHHHHHHCTTSSEEEES
T ss_pred EeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 7999999999999999999999888
No 499
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=49.47 E-value=1.7e+02 Score=32.88 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCceEEEeeccCC---CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862 119 LAGLKEILAALPEIEYICLDVANG---YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188 (671)
Q Consensus 119 ~~rl~~l~~a~~~~d~Ivld~a~G---~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd 188 (671)
.++++...+. +++++.+..... ......+.++++++.++ ..+++....+.+.+..++++|+|.+++.
T Consensus 121 ~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~GGI~~~n~~~~l~aGAdgv~vG 190 (430)
T PRK07028 121 VKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IPIAVAGGLDAETAAKAVAAGADIVIVG 190 (430)
T ss_pred HHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCC-CcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 5667766665 678886653210 11223466777766544 3343333347889999999999999774
No 500
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.08 E-value=77 Score=30.70 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=57.2
Q ss_pred EEecCCCccc---cHHHHHHHHHcCCeEEeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCce
Q psy3862 59 IIAANMDTVG---TFEMAKHLAKHGLFTTIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIE 133 (671)
Q Consensus 59 iv~a~M~~vt---~~~lA~Ala~~gglgvIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d 133 (671)
++.+.|..-. ..+....+-+.+|+-++|.+ .++||. +...++. +++
T Consensus 15 vlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~---------------------------v~aA~~~--dv~ 65 (143)
T COG2185 15 VLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA---------------------------VRAAVEE--DVD 65 (143)
T ss_pred EEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH---------------------------HHHHHhc--CCC
Confidence 4455554322 24444445667788887754 334332 2333444 566
Q ss_pred EEEeeccCC-CChHHHHHHHHHHHhCCC-ceEEEEEeccHHHHHHHHHCCCcEEE
Q psy3862 134 YICLDVANG-YTQTFVDFVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIK 186 (671)
Q Consensus 134 ~Ivld~a~G-~~~~~~~~ik~lr~~~P~-~~li~g~v~t~e~a~~Li~AGaD~Iv 186 (671)
+|.+....| |.....+.++.+++..+. ..+++|.+...++.+.|.+.|+|.|.
T Consensus 66 vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 66 VIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred EEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 666655544 334444555666665543 33466655566778889999999993
Done!