RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3862
(671 letters)
>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 346
Score = 370 bits (952), Expect = e-123
Identities = 143/270 (52%), Positives = 176/270 (65%), Gaps = 54/270 (20%)
Query: 12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
+I D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+++ GVPIIAANMDTVGTFE
Sbjct: 2 RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFE 61
Query: 72 MAKHLAKHGLFTTIHKYYTLEEWKAF-AVQNPDVIKHVAVSSGISAKDLAGLKEILAALP 130
MAK LA + T +HK+Y++EEW AF + DV+KHV VS+G S D K+ILA P
Sbjct: 62 MAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSP 121
Query: 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
+ +IC+DVANGY++ FV FV + RE +P I AGNVVTGEMVEELILSGAD++KVGIG
Sbjct: 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIG 181
Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250
PGSVCTTR+K
Sbjct: 182 PGSVCTTRVK-------------------------------------------------- 191
Query: 251 RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
TGVGYPQ SAV+ECADAAHGLGG I+S
Sbjct: 192 ---TGVGYPQLSAVIECADAAHGLGGQIVS 218
Score = 263 bits (674), Expect = 3e-82
Identities = 94/132 (71%), Positives = 109/132 (82%), Gaps = 2/132 (1%)
Query: 440 LGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS 497
LGG V DGGCT PGDVAKA G GADFVMLGGM AGH++SGGE++E++G+K LFYGMSS
Sbjct: 212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271
Query: 498 TTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
+AM +H GGVAEYRAAEGKTV++P RG V +T +DILGGLRSACTYVGAS+LKEL +R
Sbjct: 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRT 331
Query: 558 TFIRCTAQLNNV 569
TFIR Q N V
Sbjct: 332 TFIRVQEQENRV 343
Score = 172 bits (437), Expect = 5e-48
Identities = 65/111 (58%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
+I D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+++ GVPIIAANMDTVGTFE
Sbjct: 2 RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFE 61
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAF-AVQNPDVIKHVADGGCTSPGDVAK 397
MAK LA + T +HK+Y++EEW AF + DV+KHV TS D K
Sbjct: 62 MAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEK 112
Score = 115 bits (289), Expect = 6e-28
Identities = 39/58 (67%), Positives = 47/58 (81%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
AAEGKTV++P RG V +T +DILGGLRSACTYVGAS+LKEL +R TFIR Q N ++
Sbjct: 287 AAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF 344
>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase,
eukaryotic. A deep split separates two families of GMP
reductase. This family includes both eukaryotic and some
proteobacterial sequences, while the other family
contains other bacterial sequences [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 343
Score = 336 bits (864), Expect = e-110
Identities = 153/270 (56%), Positives = 189/270 (70%), Gaps = 54/270 (20%)
Query: 12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
+I D+KLDFKDV+LRPKRSTLKSR++V++ RTFTFRNS +TY GVPIIAANMDTVGTFE
Sbjct: 1 RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFE 60
Query: 72 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVAVSSGISAKDLAGLKEILAALP 130
MA L++H +FT IHK+Y+++EWKAFA +PD +++VAVSSG S DL + IL A+P
Sbjct: 61 MAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVP 120
Query: 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
++++ICLDVANGY++ FV+FV+ +RE +P+H I+AGNVVTGEMVEELILSGAD++KVGIG
Sbjct: 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIG 180
Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250
PGSVCTTR K
Sbjct: 181 PGSVCTTRTK-------------------------------------------------- 190
Query: 251 RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 191 ---TGVGYPQLSAVIECADAAHGLKGHIIS 217
Score = 233 bits (595), Expect = 7e-71
Identities = 103/132 (78%), Positives = 115/132 (87%), Gaps = 2/132 (1%)
Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS 497
L G + DGGCT PGDVAKA GAGADFVMLGGMFAGH +SGGE+IE++G+K KLFYGMSS
Sbjct: 211 LKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270
Query: 498 TTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
TAM KHAGGVAEYRA+EGKTV+VPYRGDV +T+ DILGGLRSACTYVGA+KLKEL +RA
Sbjct: 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRA 330
Query: 558 TFIRCTAQLNNV 569
TFIR T Q N V
Sbjct: 331 TFIRVTQQHNTV 342
Score = 161 bits (408), Expect = 4e-44
Identities = 70/111 (63%), Positives = 91/111 (81%), Gaps = 1/111 (0%)
Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
+I D+KLDFKDV+LRPKRSTLKSR++V++ RTFTFRNS +TY GVPIIAANMDTVGTFE
Sbjct: 1 RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFE 60
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVADGGCTSPGDVAK 397
MA L++H +FT IHK+Y+++EWKAFA +PD +++VA +S D+ K
Sbjct: 61 MAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEK 111
Score = 105 bits (262), Expect = 2e-24
Identities = 43/58 (74%), Positives = 51/58 (87%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
A+EGKTV+VPYRGDV +T+ DILGGLRSACTYVGA+KLKEL +RATFIR T Q N ++
Sbjct: 286 ASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNTVF 343
>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate
(IMP) to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of the
guanine nucleotides. There is often a CBS domain
inserted in the middle of this domain, which is proposed
to play a regulatory role. IMPDH is a key enzyme in the
regulation of cell proliferation and differentiation. It
has been identified as an attractive target for
developing chemotherapeutic agents.
Length = 325
Score = 189 bits (482), Expect = 1e-54
Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 65/264 (24%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L F DV+L P ST+ SEVD++ T + P+++A MDTV EMA +A+
Sbjct: 2 LTFDDVLLVPGYSTV-LPSEVDLSTKLTKNITLNI----PLVSAPMDTVTESEMAIAMAR 56
Query: 79 HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE--IEYIC 136
G IH+ ++EE V + V + + ++ KE AL E ++ I
Sbjct: 57 LGGIGVIHRNMSIEEQAEEV---RKVKGRLLVGAAVGTREDD--KERAEALVEAGVDVIV 111
Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
+D A+G++ ++ ++ I++ YP +IAGNVVT E +LI +GAD +KVGIGPGS+CT
Sbjct: 112 IDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICT 171
Query: 197 TRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGV 256
TR+ TGV
Sbjct: 172 TRIV-----------------------------------------------------TGV 178
Query: 257 GYPQFSAVLECADAAHGLGGHIIS 280
G PQ +AV + A AA G +I+
Sbjct: 179 GVPQATAVADVAAAARDYGVPVIA 202
Score = 153 bits (390), Expect = 1e-41
Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG + GD+ KA+ AGAD VMLG + AG D+S GE IE +GK+ K + GM S AM K
Sbjct: 203 DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKG 262
Query: 505 AG-----GVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATF 559
G A+ EG VPY+G V D + ++GGLRS+ Y GA LKEL +A F
Sbjct: 263 GGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322
Query: 560 IR 561
+R
Sbjct: 323 VR 324
Score = 72.2 bits (178), Expect = 1e-13
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L F DV+L P ST+ SEVD++ T + P+++A MDTV EMA +A+
Sbjct: 2 LTFDDVLLVPGYSTV-LPSEVDLSTKLTKNITLNI----PLVSAPMDTVTESEMAIAMAR 56
Query: 355 HGLFTTIHKYYTLEE 369
G IH+ ++EE
Sbjct: 57 LGGIGVIHRNMSIEE 71
Score = 66.0 bits (162), Expect = 1e-11
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 660
EG VPY+G V D + ++GGLRS+ Y GA LKEL +A F+R
Sbjct: 276 VPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVR 324
>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 178 bits (455), Expect = 3e-49
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 7/128 (5%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+AKA+ AGA VMLG + AG ++S GE IE++G+K K + GM S AM+KH
Sbjct: 332 DGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEYIERNGRKYKEYRGMGSLGAMEKH 391
Query: 505 AGGVAEY-RA------AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
G Y +A EG +VPY+G V DT+ +LGGLRS+ YVGA+ LKEL +A
Sbjct: 392 KGSKDRYFQAGDKKLVPEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKA 451
Query: 558 TFIRCTAQ 565
F+R T+
Sbjct: 452 FFVRVTSA 459
Score = 155 bits (393), Expect = 8e-41
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 55/174 (31%)
Query: 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG 166
V + G DL + ++ A ++ I +D A+G+++ ++ ++ I++ YP+ +IAG
Sbjct: 213 LVGAAVGTREDDLERAEALVEA--GVDVIVIDSAHGHSEYVLEMIKWIKKKYPELDVIAG 270
Query: 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEM 226
NVVT E ELI +GAD +KVGIGPG
Sbjct: 271 NVVTAEAARELIDAGADAVKVGIGPG---------------------------------- 296
Query: 227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
S+CTTR GVG PQ +AV E ADAA LG +I+
Sbjct: 297 -------------------SICTTREVAGVGRPQLTAVYEVADAARKLGVPVIA 331
Score = 93.1 bits (232), Expect = 5e-20
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L F DV+L P RS L SRS+VD++ + + +P+++ANMDTV MA +A+
Sbjct: 3 LTFDDVLLLPGRSVLPSRSDVDLST----KLTRNITLNIPLVSANMDTVTESRMAIAMAR 58
Query: 79 HGLFTTIHKYYTLEEWKAF 97
G IHK ++EE
Sbjct: 59 EGGIGVIHKNMSIEEQAEE 77
Score = 93.1 bits (232), Expect = 5e-20
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L F DV+L P RS L SRS+VD++ + + +P+++ANMDTV MA +A+
Sbjct: 3 LTFDDVLLLPGRSVLPSRSDVDLST----KLTRNITLNIPLVSANMDTVTESRMAIAMAR 58
Query: 355 HGLFTTIHKYYTLEEWKAF 373
G IHK ++EE
Sbjct: 59 EGGIGVIHKNMSIEEQAEE 77
Score = 77.3 bits (191), Expect = 7e-15
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+AKA+ AGA VMLG + AG ++S GE
Sbjct: 330 IADGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEY 368
Score = 73.1 bits (180), Expect = 1e-13
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664
EG +VPY+G V DT+ +LGGLRS+ YVGA+ LKEL +A F+R T+
Sbjct: 408 PEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKAFFVRVTSA 459
>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 326
Score = 122 bits (308), Expect = 2e-30
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTF---TFRNSGKTYQGVPIIAANMDTVGTFEMAKH 75
D++D+ L P + + SRSE D + T TF+ +P++ ANM T+ ++A+
Sbjct: 5 FDYEDIQLIPNKCIVNSRSECDTSVTLGPRTFK--------LPVVPANMQTIIDEKIAEW 56
Query: 76 LAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYI 135
LA++G F +H++ E F + ++S G+ + + ++ A EYI
Sbjct: 57 LAENGYFYIMHRFD-PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYI 115
Query: 136 CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195
+D+A+G++ + ++ ++ I++ P+ +IAGNV T E V EL +GAD KVGIGPG VC
Sbjct: 116 TIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC 175
Query: 196 TTRLK 200
T++K
Sbjct: 176 ITKIK 180
Score = 93.5 bits (233), Expect = 1e-20
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
+ DGG + GD+AK++ GA VM+G +FAGH++S G+ +E DGK K ++G +A +
Sbjct: 205 IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFG----SASE 260
Query: 503 KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
G EY+ EGK + VP++G + DT+ ++ L+S+ +Y G L +
Sbjct: 261 FQKG---EYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAI 308
Score = 53.8 bits (130), Expect = 1e-07
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE 426
+ADGG + GD+AK++ GA VM+G +FAGH++S G+ I+
Sbjct: 205 IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEID 247
Score = 51.1 bits (123), Expect = 8e-07
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTF---TFRNSGKTYQGVPIIAANMDTVGTFEMAKH 351
D++D+ L P + + SRSE D + T TF+ +P++ ANM T+ ++A+
Sbjct: 5 FDYEDIQLIPNKCIVNSRSECDTSVTLGPRTFK--------LPVVPANMQTIIDEKIAEW 56
Query: 352 LAKHGLFTTIHKYYTLEEWKAF 373
LA++G F +H++ E F
Sbjct: 57 LAENGYFYIMHRFD-PEARIPF 77
Score = 33.0 bits (76), Expect = 0.50
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 610 NVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 652
NV EGK + VP++G + DT+ ++ L+S+ +Y G L +
Sbjct: 268 NV--EGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAI 308
>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase,
bacterial. A deep split separates two families of GMP
reductase. The other (TIGR01305) is found in eukaryotic
and some proteobacterial lineages, including E. coli,
while this family is found in a variety of bacterial
lineages [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 321
Score = 110 bits (275), Expect = 2e-26
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 10/184 (5%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
D++D+ L P + + SRSE D + T GK +P++ ANM T+ ++A+ LA+
Sbjct: 2 FDYEDIQLIPNKCIVNSRSECDTSVTL-----GKHKFKLPVVPANMQTIIDEKLAEQLAE 56
Query: 79 HGLFTTIHKYYTLEEWKAFA--VQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYIC 136
+G F +H++ E F +Q + ++V G+ A + + ++ EYI
Sbjct: 57 NGYFYIMHRFDE-ESRIPFIKDMQERGLFASISV--GVKACEYEFVTQLAEEALTPEYIT 113
Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
+D+A+G++ + ++ ++ I+ P +IAGNV T E V EL +GAD KVGIGPG VC
Sbjct: 114 IDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCI 173
Query: 197 TRLK 200
T++K
Sbjct: 174 TKIK 177
Score = 96.5 bits (240), Expect = 8e-22
Identities = 83/326 (25%), Positives = 138/326 (42%), Gaps = 89/326 (27%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMA----- 349
D++D+ L P + + SRSE D + T GK +P++ ANM T+ ++A
Sbjct: 2 FDYEDIQLIPNKCIVNSRSECDTSVTL-----GKHKFKLPVVPANMQTIIDEKLAEQLAE 56
Query: 350 -------------------KHLAKHGLFTTIH---------------------KYYTLEE 369
K + + GLF +I +Y T++
Sbjct: 57 NGYFYIMHRFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDI 116
Query: 370 WKAFAVQNPDVIKH---------VADGGCTSPGDVAKAMGAGADFVMLG---------GM 411
+ ++IKH V G +P V + AGAD +G +
Sbjct: 117 AHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKI 176
Query: 412 FAGHDQSGGELTNIEY----MFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467
G G +L + + P++ D GG + GD+AK++ GA VM+
Sbjct: 177 KTGFGTGGWQLAALRWCAKAARKPIIAD----------GGIRTHGDIAKSIRFGASMVMI 226
Query: 468 GGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDV 527
G +FAGH++S GE +EKDGK K ++G S + K E++ EGK + V ++G +
Sbjct: 227 GSLFAGHEESPGETVEKDGKLYKEYFG--SASEFQK-----GEHKNVEGKKMFVEHKGSL 279
Query: 528 NDTVQDILGGLRSACTYVGASKLKEL 553
+DT+ ++ L+S+ +Y G L L
Sbjct: 280 SDTLIEMQQDLQSSISYAGGKDLDSL 305
Score = 33.8 bits (77), Expect = 0.28
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 652
EGK + V ++G ++DT+ ++ L+S+ +Y G L L
Sbjct: 267 EGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSL 305
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 110 bits (278), Expect = 1e-25
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277
AGNVVT E +L+ +GAD++KVG+GPG++CTTR+ TGVG PQFSAVLECA AA LG H
Sbjct: 273 AGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332
Query: 278 I 278
+
Sbjct: 333 V 333
Score = 81.1 bits (201), Expect = 4e-16
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL-IEKDGKKVKLFYGMS 496
LG V DGG P DVA A+ AGA VM+G FAG +S G+L ++DG+ K +GM+
Sbjct: 329 LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA 388
Query: 497 STTAM-DKHAGGVAEYRA-----AEG-KTVQV---PYRGDVNDTVQDILGGLRSACTYVG 546
S A+ + AG A RA EG T ++ P R V D + I G+RS+CTY G
Sbjct: 389 SARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAG 448
Query: 547 ASKLKELPRRA 557
A L E RA
Sbjct: 449 ARTLAEFHERA 459
Score = 46.1 bits (110), Expect = 5e-05
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 621 PYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 656
P R V D + I G+RS+CTY GA L E RA
Sbjct: 424 PGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459
Score = 41.4 bits (98), Expect = 0.001
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L + DV L P RS + SR +VD++ T +G T +P++ ANM V MA+ +A+
Sbjct: 13 LTYDDVFLVPSRSDVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 66
Query: 79 HG 80
G
Sbjct: 67 RG 68
Score = 41.4 bits (98), Expect = 0.001
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L + DV L P RS + SR +VD++ T +G T +P++ ANM V MA+ +A+
Sbjct: 13 LTYDDVFLVPSRSDVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 66
Query: 355 HG 356
G
Sbjct: 67 RG 68
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 107 bits (269), Expect = 2e-24
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+AKA+ AGA VMLG M AG +++ GE+ G+ K + GM S AM K
Sbjct: 337 DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK- 395
Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
G Y A K V +VPY+G +++ + ++GGLRS Y GA+ ++EL
Sbjct: 396 -GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE 454
Query: 556 RATFIRCTA 564
+A F+R T
Sbjct: 455 KAEFVRITG 463
Score = 96.8 bits (242), Expect = 4e-21
Identities = 47/117 (40%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 170 TGEMVEELILSGADVIKVGIGPG-------SVCTTRLKNKTSDFFLIQFYSCIPQAGNVV 222
E E L+ +G DV+ V G V +K K D +I AGNV
Sbjct: 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRV--REIKAKYPDVQII--------AGNVA 278
Query: 223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
T E LI +GAD +KVGIGPGS+CTTR+ GVG PQ +A+ + A+AA G +I
Sbjct: 279 TAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335
Score = 55.6 bits (135), Expect = 5e-08
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+AKA+ AGA VMLG M AG +++ GE+
Sbjct: 335 IADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV 373
Score = 55.2 bits (134), Expect = 7e-08
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG +VPY+G +++ + ++GGLRS Y GA+ ++EL +A F+R T
Sbjct: 414 EGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITG 463
Score = 43.3 bits (103), Expect = 4e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVD----ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAK 74
L F DV+L P S + +VD +T+ +P+++A MDTV MA
Sbjct: 9 LTFDDVLLVPAHSEVLPN-DVDLSTQLTKNIRLN--------IPLLSAAMDTVTEARMAI 59
Query: 75 HLAKHGLFTTIHKYYTLEE 93
+A+ G IHK ++EE
Sbjct: 60 AMAREGGIGVIHKNMSIEE 78
Score = 43.3 bits (103), Expect = 4e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVD----ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAK 350
L F DV+L P S + +VD +T+ +P+++A MDTV MA
Sbjct: 9 LTFDDVLLVPAHSEVLPN-DVDLSTQLTKNIRLN--------IPLLSAAMDTVTEARMAI 59
Query: 351 HLAKHGLFTTIHKYYTLEE 369
+A+ G IHK ++EE
Sbjct: 60 AMAREGGIGVIHKNMSIEE 78
>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 404
Score = 98.2 bits (244), Expect = 7e-22
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 29/265 (10%)
Query: 9 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
M KI + L F DV L P++S++ SEV + T S +P +++ MDTV
Sbjct: 1 MPNKITKE-ALTFDDVSLIPRKSSVLP-SEVSLKTQLTKNIS----LNIPFLSSAMDTVT 54
Query: 69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAF--AVQNPDVIKHVAVSSGISAKDLAGLKEIL 126
+MA +AK G IHK ++E + V+ K + + + + EI
Sbjct: 55 ESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKP----EIF 110
Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
A +E + + F + + + ++ ++ T E VEEL+ + D++
Sbjct: 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILV 170
Query: 187 VGIGPGSVCTTRL-------KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIK 239
+ G +TR+ K K + LI AGN+VT E +LI GAD +K
Sbjct: 171 IDSAHGH--STRIIELVKKIKTKYPNLDLI--------AGNIVTKEAALDLISVGADCLK 220
Query: 240 VGIGPGSVCTTRLKTGVGYPQFSAV 264
VGIGPGS+CTTR+ GVG PQ +A+
Sbjct: 221 VGIGPGSICTTRIVAGVGVPQITAI 245
Score = 82.0 bits (202), Expect = 1e-16
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
+ DGG GDV KA+ AGAD VM+G +FAG +S E I +GKK K + GM S +AM
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMK 319
Query: 503 KHAGGVAEY----------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKE 552
+ G + Y EG VPY G + D + + GGL S Y+GA+ + +
Sbjct: 320 R--GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISD 377
Query: 553 LPRRATFIR 561
L + F++
Sbjct: 378 LKINSKFVK 386
Score = 45.8 bits (108), Expect = 5e-05
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
+ADGG GDV KA+ AGAD VM+G +FAG +S E
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297
Score = 41.6 bits (97), Expect = 0.001
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
M KI + L F DV L P++S++ SEV + T S +P +++ MDTV
Sbjct: 1 MPNKITKE-ALTFDDVSLIPRKSSVLP-SEVSLKTQLTKNIS----LNIPFLSSAMDTVT 54
Query: 345 TFEMAKHLAKHGLFTTIHKYYTLEEWK 371
+MA +AK G IHK ++E +
Sbjct: 55 ESQMAIAIAKEGGIGIIHKNMSIEAQR 81
Score = 36.2 bits (83), Expect = 0.060
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 585 TYVGASKLKELPR--RATFIRCTAQLNN-----VAAEGKTVQVPYRGDVNDTVQDILGGL 637
+YVG + + R ++ + QL N + EG VPY G + D + + GGL
Sbjct: 308 SYVGMGSISAMKRGSKSRYF----QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGL 363
Query: 638 RSACTYVGASKLKELPRRATFIR 660
S Y+GA+ + +L + F++
Sbjct: 364 MSGMGYLGAATISDLKINSKFVK 386
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302 [Unknown function, General].
Length = 475
Score = 96.9 bits (241), Expect = 3e-21
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277
AGNVV+ E V +L+ +GA++IKVG+GPG++CTTR+ TGVG PQFSAVLECA A LGGH
Sbjct: 271 AGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGH 330
Query: 278 I 278
+
Sbjct: 331 V 331
Score = 83.4 bits (206), Expect = 7e-17
Identities = 55/132 (41%), Positives = 74/132 (56%), Gaps = 13/132 (9%)
Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI-EKDGKKVKLFYGMS 496
LGG V DGG P DVA A+ AGA VM+G FAG +S G+L+ ++DG+ K +GM+
Sbjct: 327 LGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMA 386
Query: 497 STTAMDKHAGGVAEYRAA------EG-KTVQV---PYRGDVNDTVQDILGGLRSACTYVG 546
S A+ G + A EG T ++ P RG V D + I+ G+RS+CTY G
Sbjct: 387 SKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAG 446
Query: 547 ASKLKELPRRAT 558
AS L+E RA
Sbjct: 447 ASSLEEFHERAV 458
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 621 PYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRAT 657
P RG V D + I+ G+RS+CTY GAS L+E RA
Sbjct: 422 PDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAV 458
Score = 44.1 bits (104), Expect = 2e-04
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 382 KHV-ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
HV ADGG P DVA A+ AGA VM+G FAG +S G+L
Sbjct: 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDL 370
Score = 38.0 bits (88), Expect = 0.015
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L + DV + P RS + SR +VD++ T +G T +P++ ANM V MA+ +A+
Sbjct: 12 LTYNDVFMVPSRSEVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 65
Query: 79 HG 80
G
Sbjct: 66 RG 67
Score = 38.0 bits (88), Expect = 0.015
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L + DV + P RS + SR +VD++ T +G T +P++ ANM V MA+ +A+
Sbjct: 12 LTYNDVFMVPSRSEVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 65
Query: 355 HG 356
G
Sbjct: 66 RG 67
>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes IMP dehydrogenase, an enzyme of GMP
biosynthesis. This form contains two CBS domains. This
model describes a rather tightly conserved cluster of
IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 450
Score = 93.2 bits (232), Expect = 5e-20
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
DGG GD+ KA+ AGAD VMLG + AG +S GE +G++ K + GM S AM K
Sbjct: 333 DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKG 392
Query: 504 ------HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
+ EG VPY+G V + + ++GGL+S YVGA + EL
Sbjct: 393 SSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448
Score = 85.9 bits (213), Expect = 1e-17
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 55/172 (31%)
Query: 108 VAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN 167
V + G D + ++ A ++ I +D ++G++ +D ++ I++ YP
Sbjct: 215 VGAAVGTREFDKERAEALVKA--GVDVIVIDSSHGHSIYVIDSIKEIKKTYPD------- 265
Query: 168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMV 227
D+I AGNV T E
Sbjct: 266 --------------LDII--------------------------------AGNVATAEQA 279
Query: 228 EELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
+ LI +GAD ++VGIGPGS+CTTR+ GVG PQ +AV + A+ A G +I
Sbjct: 280 KALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVI 331
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L F DV+L P + +VD++ T +PI+++ MDTV MA +A+
Sbjct: 2 LTFDDVLLLPGFIDV-EPDDVDLSTRITRNIKLN----IPILSSPMDTVTESRMAIAMAR 56
Query: 79 HGLFTTIHKYYTLEE 93
G IH+ ++EE
Sbjct: 57 EGGIGVIHRNMSIEE 71
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L F DV+L P + +VD++ T +PI+++ MDTV MA +A+
Sbjct: 2 LTFDDVLLLPGFIDV-EPDDVDLSTRITRNIKLN----IPILSSPMDTVTESRMAIAMAR 56
Query: 355 HGLFTTIHKYYTLEE 369
G IH+ ++EE
Sbjct: 57 EGGIGVIHRNMSIEE 71
Score = 35.8 bits (83), Expect = 0.073
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 652
EG VPY+G V + + ++GGL+S YVGA + EL
Sbjct: 409 PEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448
>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 92.7 bits (231), Expect = 9e-20
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 106 KHVAVSSGISAKDLAGLKEILAALPE--IEYICLDVANGYTQTFVDFVRRIREMYPKHVI 163
+ V + IS + E AAL E ++ + +D + G + +D +++++ YP I
Sbjct: 228 GQLLVGAAISTRP--EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDI 285
Query: 164 IAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199
IAGNVVT + + LI +GAD +++G+G GS+C T+
Sbjct: 286 IAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQE 321
Score = 90.4 bits (225), Expect = 4e-19
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
+ DGG + GD+ KA+ GAD VMLG + AG +++ GE KDG ++K++ GM S AM
Sbjct: 348 IADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAML 407
Query: 503 KHAGG------VAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
G + A+G + V +G V + ++ G++ Y+GA + EL
Sbjct: 408 SKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPEL 464
Score = 53.4 bits (129), Expect = 2e-07
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
+ +ADGG + GD+ KA+ GAD VMLG + AG +++ GE
Sbjct: 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGE 385
Score = 52.3 bits (126), Expect = 6e-07
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 10 AQKIINDIK--LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV 67
A ++ N I L + DV+L P SR +VD++ T K PI+++ MDTV
Sbjct: 7 ADELFNSIPTGLTYDDVILLPGYIDF-SRDDVDLSTRLTRNIRLKI----PIVSSPMDTV 61
Query: 68 GTFEMAKHLAKHGLFTTIHKYYTLEE----------WKAFAVQNPDVIK-HVAVSSGISA 116
+MA +A G IH ++EE ++ + +P V+ + V+ +
Sbjct: 62 TEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEI 121
Query: 117 KDLAGLKEIL 126
K+ G IL
Sbjct: 122 KEKKGFSSIL 131
Score = 51.9 bits (125), Expect = 8e-07
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 286 AQKIINDIK--LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV 343
A ++ N I L + DV+L P SR +VD++ T K PI+++ MDTV
Sbjct: 7 ADELFNSIPTGLTYDDVILLPGYIDF-SRDDVDLSTRLTRNIRLKI----PIVSSPMDTV 61
Query: 344 GTFEMAKHLAKHGLFTTIHKYYTLEE 369
+MA +A G IH ++EE
Sbjct: 62 TEHKMAIAMALMGGIGVIHNNCSIEE 87
Score = 31.1 bits (71), Expect = 2.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 609 NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 652
A+G + V +G V + ++ G++ Y+GA + EL
Sbjct: 421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPEL 464
>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide
transport and metabolism].
Length = 170
Score = 81.5 bits (202), Expect = 6e-18
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 455 AKAMGA-GADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRA 513
A AM G VM G M A ++S GE + K GM S AM ++ V +
Sbjct: 64 AIAMARDGGIGVMHGNMLA--EESPGEYL-----YQK--RGMGSIDAMQRYFSSVLVAQG 114
Query: 514 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND 571
G +G + + + GGL+S+C Y+G L L F TA V++
Sbjct: 115 VSGVV----DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKENVRFEFRTASEGGVHN 168
Score = 54.9 bits (133), Expect = 8e-09
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666
G +G + + + GGL+S+C Y+G L L F TA
Sbjct: 114 GVSGVV----DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKENVRFEFRTASEG 164
Score = 53.8 bits (130), Expect = 2e-08
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272
+V+ ++ +G DV K G+GPG GV PQ SA ++ A
Sbjct: 17 FDDVLLLPAASDVAPAGVDV-KTGLGPG--------IGVNIPQVSAAMDTVTEAR 62
Score = 44.9 bits (107), Expect = 3e-05
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197
+ V +I++ P + +V+ ++ +G DV K G+GPG
Sbjct: 2 LMQVLKIKKARPG--LTFDDVLLLPAASDVAPAGVDV-KTGLGPGIGVNI 48
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 21 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 80
F DV+L P S + +T G +P ++A MDTV MA +A+ G
Sbjct: 17 FDDVLLLPAASDVAPAG--VDVKTGLGPGIGV---NIPQVSAAMDTVTEARMAIAMARDG 71
Query: 81 LFTTIHKYYTLEE 93
+H EE
Sbjct: 72 GIGVMHGNMLAEE 84
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 356
F DV+L P S + +T G +P ++A MDTV MA +A+ G
Sbjct: 17 FDDVLLLPAASDVAPAG--VDVKTGLGPGIGV---NIPQVSAAMDTVTEARMAIAMARDG 71
Query: 357 LFTTIHKYYTLEE 369
+H EE
Sbjct: 72 GIGVMHGNMLAEE 84
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 66.3 bits (162), Expect = 2e-11
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 100 QNP----DVIKHVAVSSGISAKDLAGLKEILAALPE--IEYICLDVANGYTQTFVDFVRR 153
+NP D K V +GI+ +D A E + AL E + +C+D + GY++ +
Sbjct: 220 ENPLELLDSSKRYVVGAGINTRDYA---ERVPALVEAGADVLCIDSSEGYSEWQKRTLDW 276
Query: 154 IREMYPKHVII-AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 198
IRE Y V + AGNVV E L +GAD +KVGIG GS+C TR
Sbjct: 277 IREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR 322
Score = 53.2 bits (128), Expect = 3e-07
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD-- 502
DGG + A+ GADF+MLG FA D+S + +G +K ++G S A +
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQ 417
Query: 503 -KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 561
GG + EG VPY G + D V L +RS GA + EL ++A
Sbjct: 418 RYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITL 477
Query: 562 CTA 564
++
Sbjct: 478 VSS 480
Score = 33.1 bits (76), Expect = 0.47
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMF 429
+DGG + A+ GADF+MLG FA D+S NI +
Sbjct: 357 SDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNY 401
>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 60.1 bits (146), Expect = 2e-09
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
DGG ++ G + KA+ GA VM+G AG ++ GE +DG +VK + GM S AM K
Sbjct: 357 DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKG 416
Query: 504 ----HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKE 552
+ G A+ + A+G + V +G V V + ++ +GAS L+
Sbjct: 417 SDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQS 469
Score = 58.1 bits (141), Expect = 7e-09
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 123 KEILAALPE--IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILS 180
KE L L + ++ + LD + G + ++ ++ I++ YP+ +I GNVVT + LI +
Sbjct: 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA 309
Query: 181 GADVIKVGIGPGSVCTT 197
G D ++VG+G GS+CTT
Sbjct: 310 GVDGLRVGMGSGSICTT 326
Score = 55.4 bits (134), Expect = 5e-08
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG-- 275
GNVVT + LI +G D ++VG+G GS+CTT+ VG Q +AV + A A G
Sbjct: 294 GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP 353
Query: 276 ----------GHIISFLT 283
GHI+ LT
Sbjct: 354 VIADGGISNSGHIVKALT 371
Score = 42.3 bits (100), Expect = 6e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
+ADGG ++ G + KA+ GA VM+G AG ++ GE
Sbjct: 355 IADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGE 392
>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 55.2 bits (134), Expect = 4e-08
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 47/263 (17%)
Query: 20 DFKDVMLRPKRSTLKSRSEVDITRT---FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHL 76
++ + P R T +V + + F +PIIA+ MD V + E A L
Sbjct: 17 GLDEIAIVPSRRTRDP-EDVSTSWQIDAYRFE--------IPIIASPMDAVVSPETAIEL 67
Query: 77 AKHGLFTTIHKYYTLEE-WKAFAVQNPD-VIKHVAVSSGISAKDLAGLKEILAALPEIEY 134
K G ++ LE W + +P+ ++ +A A L ++E+ A + E
Sbjct: 68 GKLGGLGVLN----LEGLWTRYE--DPEPILDEIASLGKDEATRL--MQELYAEPIKPEL 119
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGP 191
I RI E+ VI+A ++ E+ ++ +G D+ +
Sbjct: 120 I---------------TERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVI---Q 161
Query: 192 GSVCTTRLKNKTSD-FFLIQFYSCIPQ---AGNVVTGEMVEELILSGADVIKVGIGPGSV 247
G+V + +K + L +F + G VT L+ +GA + VGIGPG+
Sbjct: 162 GTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAA 221
Query: 248 CTTRLKTGVGYPQFSAVLECADA 270
CT+R G+G P +A+ + A A
Sbjct: 222 CTSRGVLGIGVPMATAIADVAAA 244
Score = 42.1 bits (100), Expect = 6e-04
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
+ DGG + GD+AKA+ GAD VMLG A ++ G +GM+
Sbjct: 260 IADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGR---------GWHWGMA------ 304
Query: 503 KHAGGVAEYRAAEGKTVQVPYRG----------DVNDTVQDILGGLRSACTYVGASKLKE 552
G ++V G + D +++G LR + +G S LKE
Sbjct: 305 -----APHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKE 359
Query: 553 LPR 555
+
Sbjct: 360 FQK 362
Score = 42.1 bits (100), Expect = 7e-04
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 383 HV-ADGGCTSPGDVAKAMGAGADFVMLGGMFA 413
HV ADGG + GD+AKA+ GAD VMLG A
Sbjct: 258 HVIADGGIGTSGDIAKAIACGADAVMLGSPLA 289
>gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase. Most species with a
member of this family belong to the high GC
Gram-positive bacteria, and these also have the IMP
dehydrogenase described by TIGRFAMs equivalog model
TIGR01302 [Unknown function, General].
Length = 369
Score = 47.5 bits (113), Expect = 1e-05
Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 37/258 (14%)
Query: 21 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 80
D+ + P R T S+ +VD +P IA MD + + E A L + G
Sbjct: 15 LDDISVVPSRRTRSSK-DVDTAWQI-----DAYRFELPFIAHPMDALVSPEFAIELGELG 68
Query: 81 LFTTIHKYYTLEE-WKAFAVQNPDVIKHVAV-SSGISAKDLAGLKEILAALPEIEYICLD 138
++ LE W +P + K G A L+E+ AA + E +
Sbjct: 69 GLGVLN----LEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLG-- 122
Query: 139 VANGYTQTFVDFVRRIREMYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGSVC 195
RI E+ VI A V E+ ++ +GAD++ I V
Sbjct: 123 -------------ERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLV--IQGTLVS 167
Query: 196 TTRLKNKTSDFFLIQFYSCIPQ---AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
+ L +F + AG V L+ +GA V +GPG TTRL
Sbjct: 168 AEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGA--AGVIVGPGGANTTRL 225
Query: 253 KTGVGYPQFSAVLECADA 270
G+ P +A+ + A A
Sbjct: 226 VLGIEVPMATAIADVAAA 243
Score = 40.6 bits (95), Expect = 0.002
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
Y+ + DGG + GD+ KA+ GAD V+LG A ++ G F+ ++
Sbjct: 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR---------GYFWPAAAA 305
Query: 499 TAMDKHAGGVAEYRAAEGKTVQVPYRG--DVNDTVQDILGGLRSACTYVGASKLKELPR 555
E T++ G + D V++ GGL+ A G + LKE +
Sbjct: 306 HPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQK 364
Score = 36.7 bits (85), Expect = 0.031
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
+ADGG + GD+ KA+ GAD V+LG A ++ G
Sbjct: 259 IADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR 296
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 379 DVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412
D + +A GG + DVAKA+ GAD V +G
Sbjct: 284 DRVSLIASGGLRTGADVAKALALGADAVGIGTAA 317
Score = 37.1 bits (87), Expect = 0.025
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMF 471
+ GG + DVAKA+ GAD V +G
Sbjct: 289 IASGGLRTGADVAKALALGADAVGIGTAA 317
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 38.0 bits (89), Expect = 0.012
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 378 PDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412
D I+ +ADGG S DVAKA+ GAD V +G F
Sbjct: 271 GDRIEVIADGGIRSGLDVAKALALGADAVGIGRPF 305
Score = 35.7 bits (83), Expect = 0.075
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMF 471
+ DGG S DVAKA+ GAD V +G F
Sbjct: 277 IADGGIRSGLDVAKALALGADAVGIGRPF 305
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
family occurs in both prokaryotes and eukaryotes.
Members of this family include flavocytochrome b2
(FCB2), glycolate oxidase (GOX), lactate monooxygenase
(LMO), mandelate dehydrogenase (MDH), and long chain
hydroxyacid oxidase (LCHAO). In green plants, glycolate
oxidase is one of the key enzymes in photorespiration
where it oxidizes glycolate to glyoxylate. LMO catalyzes
the oxidation of L-lactate to acetate and carbon
dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
It is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate.
Length = 299
Score = 37.8 bits (89), Expect = 0.015
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
+DGG DV KA+ GAD V++G
Sbjct: 232 LDGGIRRGTDVLKALALGADAVLIG 256
Score = 36.3 bits (85), Expect = 0.043
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 386 DGGCTSPGDVAKAMGAGADFVMLG 409
DGG DV KA+ GAD V++G
Sbjct: 233 DGGIRRGTDVLKALALGADAVLIG 256
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 37.1 bits (87), Expect = 0.020
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 22/98 (22%)
Query: 378 PDVIKHVADGGCTSPGDVAKAMGAGADFVML---GGMFAGHDQSGGELTNIEYMFFPLVG 434
P V+K G SP D +A+ AG D +++ GG Q G I+ +
Sbjct: 172 PLVVK-----GILSPEDAKRAVEAGVDGIVVSNHGGR-----QLDGAPATID-----ALP 216
Query: 435 DMNSYLGG----VVDGGCTSPGDVAKAMGAGADFVMLG 468
++ + +GG +VDGG DV KA+ GAD V+LG
Sbjct: 217 EIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLG 254
>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDP is a
member of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN.
Length = 236
Score = 36.3 bits (85), Expect = 0.033
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 378 PDVIKHVADGG------CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFP 431
+V++ + G TS + KA AGAD ++ G ++GG + F
Sbjct: 92 AEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGA-----EAGGHRGTFDIGTFA 146
Query: 432 LVGDMNSYLGG--VVDGGCTSPGDVAKAMGAGADFVMLG 468
LV ++ + + GG +A A+ GAD V +G
Sbjct: 147 LVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG 185
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 35.3 bits (81), Expect = 0.053
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 12/148 (8%)
Query: 331 QGVPIIA--ANMDTVGTFEMAKHLAKHGLFTTI----HKYYTLEEWKAFAVQNPDVIKHV 384
+P+ A D ++A A+ + Y E + + + V
Sbjct: 56 TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDV 115
Query: 385 ADGGCTSPGDVAKAMG---AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG 441
SP A AG D V LG G + +
Sbjct: 116 KVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAK-RGSKVPV- 173
Query: 442 GVVDGGCTSPGDVAKAMGAGADFVMLGG 469
+ GG P D A+A+ GAD V++G
Sbjct: 174 -IAGGGINDPEDAAEALALGADGVIVGS 200
Score = 33.7 bits (77), Expect = 0.16
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 134 YICLDVANGYTQTFVD-FVRRIREMYPKHVIIAGNVVTGEMVEE-LILSGADVIKVGIGP 191
+ + A GY +R +RE P ++ TGE+ +G D + +G G
Sbjct: 87 GVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGG 146
Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQ----AGNVVTGEMVEELILSGADVIKVG 241
G +D LI G + E E + GAD + VG
Sbjct: 147 GGGGGRDA-VPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199
Score = 32.6 bits (74), Expect = 0.50
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 12/145 (8%)
Query: 55 QGVPIIA--ANMDTVGTFEMAKHLAKHGLFTTI----HKYYTLEEWKAFAVQNPDVIKHV 108
+P+ A D ++A A+ + Y E + + + V
Sbjct: 56 TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDV 115
Query: 109 AVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKH-----VI 163
V +S E + G + + + K VI
Sbjct: 116 KVVVKLSPTG-ELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVI 174
Query: 164 IAGNVVTGEMVEELILSGADVIKVG 188
G + E E + GAD + VG
Sbjct: 175 AGGGINDPEDAAEALALGADGVIVG 199
>gnl|CDD|223871 COG0800, Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase
[Carbohydrate transport and metabolism].
Length = 211
Score = 35.3 bits (82), Expect = 0.064
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
++ +R + + +P+ +I AG V+ E + I +GA I + PG
Sbjct: 52 LEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI---VSPG 93
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.
Length = 217
Score = 34.9 bits (81), Expect = 0.072
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 71 EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIK-HVAVSS-----GISAKDLAGLKE 124
E LA++ L T+ E A A + ++ H+ V + G + ++L L E
Sbjct: 77 EELAALAEYDLIPTVDSLEQAEALSAAAAKAGRPLRVHLKVDTGMGRLGFTPEELPALAE 136
Query: 125 ILAALPEIEYI----------CLDVANGYTQTFVDFVRRIREMYPKHVII-AGNVVTGEM 173
LAALP + D F + R+ ++ GN + +
Sbjct: 137 ALAALPGLRLEGLMTHFACADEPDYTERQLARFRELADRLEAAGLAPPVLSLGN--SAAL 194
Query: 174 VEELILSGADVIKVGIG 190
+ ++ GAD+++ GI
Sbjct: 195 LLAILHEGADMVRPGIA 211
>gnl|CDD|235577 PRK05718, PRK05718,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 212
Score = 34.1 bits (79), Expect = 0.16
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 120 AGLKEILAALPEIEYICLD------------VANGY--------TQTFVDFVRRIREMYP 159
++EIL A P + I ++ VA G T ++ +R I + P
Sbjct: 6 TSIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP 65
Query: 160 KHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS 193
+ +I AG V+ E + + I +GA I + PG
Sbjct: 66 EALIGAGTVLNPEQLAQAIEAGAQFI---VSPGL 96
Score = 28.7 bits (65), Expect = 8.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 333 VPIIAANM--DTVGTFEMAKHLAKHGLFT---TIHKYYTLEEWKAFAVQNPDVIKHVADG 387
VP+I N D V +AK L GL T+ LE + A + P+ + + G
Sbjct: 18 VPVIVINKLEDAV---PLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEAL--IGAG 72
Query: 388 GCTSPGDVAKAMGAGADFV 406
+P +A+A+ AGA F+
Sbjct: 73 TVLNPEQLAQAIEAGAQFI 91
>gnl|CDD|239206 cd02812, PcrB_like, PcrB_like proteins. One member of this family,
a protein from Archaeoglobus fulgidus, has been
characterized as a (S)-3-O-geranylgeranylglyceryl
phosphate synthase (AfGGGPS). AfGGGPS catalyzes the
formation of an ether linkage between
sn-glycerol-1-phosphate (G1P) and geranylgeranyl
diphosphate (GGPP), the committed step in archaeal lipid
biosynthesis. Therefore, it has been proposed that
PcrB-like proteins are either prenyltransferases or are
involved in lipoteichoic acid biosynthesis although the
exact function is still unknown.
Length = 219
Score = 33.8 bits (78), Expect = 0.17
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 143 YTQTFVD--FVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIKVG 188
Y+ + VR ++++ +I+ G + +GE +E+ +GAD I VG
Sbjct: 156 YSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVG 204
>gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme
metabolism].
Length = 335
Score = 34.2 bits (79), Expect = 0.18
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 52/180 (28%)
Query: 52 KTYQGVPIIAANMDTVG--TFEMAKHLAKHGLFTTIH------KYY-------TLEEWKA 96
K G+ + A ++G T E A+ LA G+ H ++Y T E+
Sbjct: 128 KEELGLEVCA----SLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRL- 182
Query: 97 FAVQNPDVIKHVA-----VSSGI------SAKDLAGLKEILAALPEIEYICLDVANGYTQ 145
+ +++V V SG + +D A L LA LP + + ++ N
Sbjct: 183 ------NTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPG 236
Query: 146 T---------FVDFVRRI---REMYPK-HVIIAGN--VVTGEMVEELILSGADVIKVGIG 190
T +F++ I R + PK + ++ + E+ ++GA+ I VG
Sbjct: 237 TPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDK 296
>gnl|CDD|214380 CHL00162, thiG, thiamin biosynthesis protein G; Validated.
Length = 267
Score = 33.5 bits (77), Expect = 0.26
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 35/129 (27%)
Query: 341 DTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVI--KHVADGGCTSPGDVAKA 398
D +GT + A+ L K G FT + Y N D + KH+ D GC + +
Sbjct: 122 DPIGTLKAAEFLVKKG-FTVLP--YI----------NADPMLAKHLEDIGCATVMPLGSP 168
Query: 399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAM 458
+G+G Q L N++ + N+ + ++D G +P + ++AM
Sbjct: 169 IGSG--------------QGLQNLLNLQIII------ENAKIPVIIDAGIGTPSEASQAM 208
Query: 459 GAGADFVML 467
GA V+L
Sbjct: 209 ELGASGVLL 217
>gnl|CDD|240080 cd04729, NanE, N-acetylmannosamine-6-phosphate epimerase (NanE)
converts N-acetylmannosamine-6-phosphate to
N-acetylglucosamine-6-phosphate. This reaction is part
of the pathway that allows the usage of sialic acid as a
carbohydrate source. Sialic acids are a family of
related sugars that are found as a component of
glycoproteins, gangliosides, and other
sialoglycoconjugates.
Length = 219
Score = 33.3 bits (77), Expect = 0.31
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV 444
AD ++ + A G D + G +G+ E E F L+ ++ LG V
Sbjct: 128 AD--ISTLEEALNAAKLGFDII--GTTLSGYT---EETAKTEDPDFELLKELRKALGIPV 180
Query: 445 --DGGCTSPGDVAKAMGAGADFVMLGG 469
+G SP AKA+ GAD V++G
Sbjct: 181 IAEGRINSPEQAAKALELGADAVVVGS 207
Score = 30.2 bits (69), Expect = 3.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGG 410
+A+G SP AKA+ GAD V++G
Sbjct: 181 IAEGRINSPEQAAKALELGADAVVVGS 207
>gnl|CDD|188632 cd00452, KDPG_aldolase, KDPG and KHG aldolase. KDPG and KHG
aldolase. This family belongs to the class I adolases
whose reaction mechanism involves Schiff base formation
between a substrate carbonyl and lysine residue in the
active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG)
aldolase, is best known for its role in the
Entner-Doudoroff pathway of bacteria, where it catalyzes
the reversible cleavage of KDPG to pyruvate and
glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate
(KHG) aldolase, which has enzymatic specificity toward
glyoxylate, forming KHG in the presence of pyruvate, and
is capable of regulating glyoxylate levels in the
glyoxylate bypass, an alternate pathway when bacteria
are grown on acetate carbon sources.
Length = 190
Score = 32.9 bits (76), Expect = 0.36
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 149 DFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI 185
+ +R +R+ +P+ +I AG V+T E + I +GA I
Sbjct: 44 EAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI 80
Score = 32.5 bits (75), Expect = 0.44
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 35/132 (26%)
Query: 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAD---------GGCTSPGDV 395
+A+ L + G I + I+ + G +P
Sbjct: 18 ALALAEALIEGG-IRAIEITLRTPGA-------LEAIRALRKEFPEALIGAGTVLTPEQA 69
Query: 396 AKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVA 455
A+ AGA F++ G + E +V N G + G +P ++
Sbjct: 70 DAAIAAGAQFIVSPG------------LDPE-----VVKAANRA-GIPLLPGVATPTEIM 111
Query: 456 KAMGAGADFVML 467
+A+ GAD V L
Sbjct: 112 QALELGADIVKL 123
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 33.4 bits (77), Expect = 0.38
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 379 DVIKHVADGGCTSPGDVAKAMGAGADFVMLG--GMFA 413
D +K +ADGG + DVAKA GAD V G + A
Sbjct: 373 DKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVA 409
Score = 30.7 bits (70), Expect = 2.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG--GMFA 472
DGG + DVAKA GAD V G + A
Sbjct: 379 ADGGLRTGADVAKAAALGADAVGFGTAALVA 409
>gnl|CDD|238869 cd01831, Endoglucanase_E_like, Endoglucanase E-like members of the
SGNH hydrolase family; Endoglucanase E catalyzes the
endohydrolysis of 1,4-beta-glucosidic linkages in
cellulose, lichenin and cereal beta-D-glucans.
Length = 169
Score = 32.3 bits (74), Expect = 0.42
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 143 YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV 187
+T +V+F+ +R+ YP I+ + G M+ + ++ +V
Sbjct: 79 FTNAYVEFIEELRKRYPDAPIVL---MLGPMLFGPYGTEEEIKRV 120
>gnl|CDD|162241 TIGR01182, eda, Entner-Doudoroff aldolase.
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
is an enzyme of the Entner-Doudoroff pathway. This
aldolase has another function, 4-hydroxy-2-oxoglutarate
aldolase (EC 4.1.3.16) shown experimentally in
Escherichia coli and Pseudomonas putida [Amino acid
biosynthesis, Glutamate family, Energy metabolism,
Entner-Doudoroff].
Length = 204
Score = 31.9 bits (73), Expect = 0.77
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 333 VPIIAANMDTVGTFEMAKHLAKHGL------FTTIHKYYTLEEWKAFAVQNPDVIKHVAD 386
VP+I + D +AK L + GL T L+ + + PD + +
Sbjct: 11 VPVIRID-DVDDALPLAKALIEGGLRVLEVTLRTPV---ALDAIRLLRKEVPDAL--IGA 64
Query: 387 GGCTSPGDVAKAMGAGADFV 406
G +P + +A+ AGA F+
Sbjct: 65 GTVLNPEQLRQAVDAGAQFI 84
Score = 30.4 bits (69), Expect = 2.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS 193
+D +R +R+ P +I AG V+ E + + + +GA I + PG
Sbjct: 47 LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---VSPGL 89
>gnl|CDD|110106 pfam01081, Aldolase, KDPG and KHG aldolase. This family includes
the following members: 4-hydroxy-2-oxoglutarate aldolase
(KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate
aldolase (KDPG-aldolase).
Length = 196
Score = 31.3 bits (71), Expect = 1.1
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 122 LKEILAALPEIEYICLDVANGY--------TQTFVDFVRRIREMYPKHVIIAGNVVTGEM 173
+K+ ALP E + A G T +D +R +R+ P ++ AG V+ +
Sbjct: 16 IKDKEDALPLAEAL---AAGGIRVLEVTLRTPCALDAIRLLRKNRPDALVGAGTVLNAQQ 72
Query: 174 VEELILSGADVIKVGIGPG 192
+ E +GA + + PG
Sbjct: 73 LAEAAEAGAQFV---VSPG 88
>gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN
binding domain. OYE was the first flavin-dependent
enzyme identified, however its true physiological role
remains elusive to this day. Each monomer of OYE
contains FMN as a non-covalently bound cofactor, uses
NADPH as a reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 327
Score = 31.8 bits (73), Expect = 1.3
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG-ADVIKVG 188
F++ +I++ VI G + E+ EE++ G AD++ +G
Sbjct: 269 FLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 31.5 bits (72), Expect = 1.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMF----AGHDQSG 419
I +AD G + DV + + GAD V+LG F A Q+G
Sbjct: 301 ITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAG 343
Score = 31.1 bits (71), Expect = 1.7
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 23/127 (18%)
Query: 368 EEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEY 427
+ W P VIK + D P D A+ GAD +++ G Q G L++
Sbjct: 242 DFWDG-----PMVIKGILD-----PEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARA 289
Query: 428 MFFPLVGD-MNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMF----AGHDQSGGE-- 480
+ P + D + + + D G + DV + + GAD V+LG F A Q+G
Sbjct: 290 L--PAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANL 347
Query: 481 --LIEKD 485
LIEK+
Sbjct: 348 LDLIEKE 354
>gnl|CDD|226207 COG3682, COG3682, Predicted transcriptional regulator
[Transcription].
Length = 123
Score = 30.0 bits (68), Expect = 1.8
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 95 KAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAAL 129
K ++ H A ++A ++ LK IL +
Sbjct: 85 KICDGGLASLVAHFAEKEKLTADEIEALKAILDEI 119
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 30.7 bits (70), Expect = 1.8
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV 444
AD C++ + A G D + G +G+ + T ++ + D + +
Sbjct: 132 AD--CSTFEEGLNAHKLGFDII--GTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRV--IA 185
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGG 469
+G +P KA+ GAD V++G
Sbjct: 186 EGRYNTPEQAKKAIEIGADAVVVGS 210
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a separate
subunit in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 31.1 bits (71), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLG 409
ADGG + DVAKA GAD V +G
Sbjct: 278 ADGGLRTGADVAKAAALGADAVYIG 302
Score = 30.7 bits (70), Expect = 2.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
DGG + DVAKA GAD V +G
Sbjct: 278 ADGGLRTGADVAKAAALGADAVYIG 302
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 31.0 bits (71), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 123 KEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIA 165
+EI A P ++Y L V T T + RR+RE P +IA
Sbjct: 158 REIARAFPPLDY--LFVGVSTTGTLMGCSRRLRERGPNTKVIA 198
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 31.2 bits (70), Expect = 2.1
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 91 LEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLD---VANGYTQTF 147
E A +N +++ + + + ILA L + IC V G TF
Sbjct: 607 YEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF 666
Query: 148 VDFVRRIREM----YPKHVIIAGNVVTGEMVEELILS 180
V +RE Y K +I + + ++EL+L
Sbjct: 667 DRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLD 703
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes. The fold type III PLP-dependent enzyme family
is predominantly composed of two-domain proteins with
similarity to bacterial alanine racemases (AR) including
eukaryotic ornithine decarboxylases (ODC), prokaryotic
diaminopimelate decarboxylases (DapDC), biosynthetic
arginine decarboxylases (ADC), carboxynorspermidine
decarboxylases (CANSDC), and similar proteins. AR-like
proteins contain an N-terminal PLP-binding TIM-barrel
domain and a C-terminal beta-sandwich domain. They exist
as homodimers with active sites that lie at the
interface between the TIM barrel domain of one subunit
and the beta-sandwich domain of the other subunit. These
proteins play important roles in the biosynthesis of
amino acids and polyamine. The family also includes the
single-domain YBL036c-like proteins, which contain a
single PLP-binding TIM-barrel domain without any N- or
C-terminal extensions. Due to the lack of a second
domain, these proteins may possess only limited D- to
L-alanine racemase activity or non-specific racemase
activity.
Length = 211
Score = 30.4 bits (69), Expect = 2.1
Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 24/152 (15%)
Query: 59 IIAANMDTVGTFEMAKHLAKHGLF-TTIHKYYTLEEWKAFAVQNPDVIK-HVAVSS---- 112
+ V E A A+ G+ T+ LE+ + A++ + + + +
Sbjct: 63 LFLGPCKQVSELEDA---AEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGDEN 119
Query: 113 ---GISAKDLAGLKEILAALPEIEYICL--DVANGYT---------QTFVDFVRRIREMY 158
G+ ++L L E LP + + L + FV + ++ E+
Sbjct: 120 GKFGVRPEELKALLERAKELPHLRLVGLHTHFGSADEDYSPFVEALSRFVAALDQLGELG 179
Query: 159 PK-HVIIAGNVVTGEMVEELILSGADVIKVGI 189
+ G ++EL L +++ G
Sbjct: 180 IDLEQLSIGGSFAILYLQELPLGTFIIVEPGR 211
>gnl|CDD|237286 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 244
Score = 30.8 bits (70), Expect = 2.1
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 437 NSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDG 486
N YL VV G SP D A+ AGAD V++G F E +EK+G
Sbjct: 185 NKYL--VVGFGLDSPEDARDALSAGADGVVVGTAFI-------EELEKNG 225
Score = 28.9 bits (65), Expect = 7.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFA 413
V G SP D A+ AGAD V++G F
Sbjct: 189 VVGFGLDSPEDARDALSAGADGVVVGTAFI 218
>gnl|CDD|225458 COG2906, Bfd, Bacterioferritin-associated ferredoxin [Inorganic ion
transport and metabolism].
Length = 63
Score = 28.1 bits (63), Expect = 2.4
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 379 DVIKHVADGGCTSPGDVAKAMGAGAD 404
I+ G T+ ++ + G G+
Sbjct: 12 KQIREAVAQGATTLKELRRFTGVGSQ 37
>gnl|CDD|240090 cd04739, DHOD_like, Dihydroorotate dehydrogenase (DHOD) like
proteins. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
This subgroup has the conserved FMN binding site, but
lacks some catalytic residues and may therefore be
inactive.
Length = 325
Score = 30.7 bits (70), Expect = 2.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVML 408
A GG DV K + AGAD VM
Sbjct: 241 AASGGVHDAEDVVKYLLAGADVVMT 265
Score = 29.1 bits (66), Expect = 8.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 446 GGCTSPGDVAKAMGAGADFVML 467
GG DV K + AGAD VM
Sbjct: 244 GGVHDAEDVVKYLLAGADVVMT 265
>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG. This family
consists of several bacterial thiazole biosynthesis
protein G sequences. ThiG, together with ThiF and ThiH,
is proposed to be involved in the synthesis of
4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
intermediate in the thiazole production pathway.
Length = 246
Score = 30.2 bits (69), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
+VD G +P D A+AM GAD V+L
Sbjct: 178 IVDAGIGTPSDAAQAMELGADAVLL 202
>gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase
(NMO), formerly referred to as 2-nitropropane
dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent
enzyme that uses molecular oxygen to oxidize (anionic)
alkyl nitronates and, in the case of the enzyme from
Neurospora crassa, (neutral) nitroalkanes to the
corresponding carbonyl compounds and nitrite. Previously
classified as 2-nitropropane dioxygenase, but it is now
recognized that this was the result of the slow
ionization of nitroalkanes to their nitronate (anionic)
forms. The enzymes from the fungus Neurospora crassa and
the yeast Williopsis saturnus var. mrakii (formerly
classified as Hansenula mrakii) contain non-covalently
bound FMN as the cofactor. Active towards linear alkyl
nitronates of lengths between 2 and 6 carbon atoms and,
with lower activity, towards propyl-2-nitronate. The
enzyme from N. crassa can also utilize neutral
nitroalkanes, but with lower activity. One atom of
oxygen is incorporated into the carbonyl group of the
aldehyde product. The reaction appears to involve the
formation of an enzyme-bound nitronate radical and an
a-peroxynitroethane species, which then decomposes,
either in the active site of the enzyme or after
release, to acetaldehyde and nitrite.
Length = 329
Score = 30.4 bits (69), Expect = 2.9
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 372 AFAVQNPDVIKHVADGG------CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNI 425
F + DVI+ + + G +S + KA AGAD V+ G AG G T +
Sbjct: 121 GFGLPPEDVIERLKESGTKVIPTVSSAKEARKAEAAGADAVVAQGPEAG----GHIGTFV 176
Query: 426 EYMFFPLVGDMNSYL-------GGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG 478
F LV + + GG+ DG +A A+ GA+ V +G F ++
Sbjct: 177 GVTTFLLVPTVVDAVDIPVIAAGGIADG-----RGIAAALALGAEGVQIGTRFLATKEAD 231
>gnl|CDD|235912 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 30.4 bits (69), Expect = 3.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 151 VRRIREMYPKHVIIAG--NVVTGEM-VEELILSGADVIKV-GIGPGSV 194
+R +R+ +P H I+A + TG + VE +GAD++ + G+ S
Sbjct: 48 IRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLADDST 95
>gnl|CDD|234426 TIGR03975, rSAM_ocin_1, bacteriocin maturation radical SAM protein
1. Models TIGR03793 and TIGR03798 describe bacteriocin
precursor families to occur often in large paralogous
families and are subject to various modifications,
including by LanM family lantibiotic synthases and by
cyclodehydratases. This model represents a radical SAM
protein family that regularly occurs in the context of
these bacteriocins, and may occur where other familiar
peptide modification enzymes are absent [Cellular
processes, Toxin production and resistance].
Length = 606
Score = 30.8 bits (70), Expect = 3.0
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 120 AGLKEILAALPE-IEYICLDVAN------GYTQTF------VDFVRRIREMYPKHVIIAG 166
A L+ + A +P IE D+A G+T TF + +RRI+E+ P+ V + G
Sbjct: 104 AALRALRAVIPGFIEECAADIAAGRPRIVGFTSTFQQTCASLALLRRIKELAPEIVTVFG 163
Query: 167 NV-VTGEMVEELI 178
GEM ELI
Sbjct: 164 GANCEGEMGAELI 176
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding
domain. MDH is part of a widespread family of
homologous FMN-dependent a-hydroxy acid oxidizing
enzymes that oxidizes (S)-mandelate to phenylglyoxalate.
MDH is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate. This family occurs in both
prokaryotes and eukaryotes. Members of this family
include flavocytochrome b2 (FCB2), glycolate oxidase
(GOX), lactate monooxygenase (LMO), mandelate
dehydrogenase (MDH), and long chain hydroxyacid oxidase
(LCHAO).
Length = 361
Score = 30.6 bits (69), Expect = 3.1
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGG 447
G + D + + GAD V+L G Q + IE + + Y ++D G
Sbjct: 243 GIVTAEDAKRCIELGADGVILSNH--GGRQLDDAIAPIEAL--AEIVAAT-YKPVLIDSG 297
Query: 448 CTSPGDVAKAMGAGADFVMLG 468
D+ KA+ GA+ V+LG
Sbjct: 298 IRRGSDIVKALALGANAVLLG 318
>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous
cofactor that plays an important role in carbohydrate
and amino acid metabolism. ThiG catalyzes the formation
of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
and dehydroglycine, with the help of the sulfur carrier
protein ThiS that carries the sulfur needed for thiazole
assembly on its carboxy terminus (ThiS-COSH).
Length = 248
Score = 30.1 bits (69), Expect = 3.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
+VD G +P D A+AM GAD V+L
Sbjct: 179 IVDAGIGTPSDAAQAMELGADAVLL 203
>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases. Class I aldolases.
The class I aldolases use an active-site lysine which
stabilizes a reaction intermediates via Schiff base
formation, and have TIM beta/alpha barrel fold. The
members of this family include
2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin.
Length = 201
Score = 29.6 bits (67), Expect = 3.8
Identities = 35/158 (22%), Positives = 51/158 (32%), Gaps = 26/158 (16%)
Query: 118 DLAGLKEILAALPEIEYICLDVANGYTQ---TFVDFVRRIREMYPKHVIIAGNVV---TG 171
DL L A L +I +C + +VR + + VV TG
Sbjct: 2 DLTLLHPD-ATLEDIAKLCDEAIEYGFAAVCVNPGYVRLAADALAGSDVPVIVVVGFPTG 60
Query: 172 EM--------VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC-------IP 216
VEE I GAD I V I GS+ + + + + I
Sbjct: 61 LTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVIL 120
Query: 217 QAGNVVTGEMV----EELILSGADVIKVGIGPGSVCTT 250
+ + T + + +GAD IK G G T
Sbjct: 121 ETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGAT 158
>gnl|CDD|240092 cd04741, DHOD_1A_like, Dihydroorotate dehydrogenase (DHOD) class 1A
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
Length = 294
Score = 30.0 bits (68), Expect = 3.9
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 151 VRRIREMYPKHVII--AGNVVTGEMVEELILSGADVIKVGIG 190
VR R + P + I G V+ G + L+GA ++VG
Sbjct: 233 VRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274
>gnl|CDD|221881 pfam12982, DUF3866, Protein of unknown function (DUF3866). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 352 and 374 amino
acids in length.
Length = 320
Score = 29.9 bits (68), Expect = 4.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 234 GADVIKVGIGPGSVCTTRLKTGVGYPQFSAV--LECADAAHGLGGHII 279
ADV+ V +GPG V TG + FS V E +A LGG +
Sbjct: 175 KADVVIVSMGPGIV-----GTGTKW-GFSGVEQGEILNAVSVLGGRPV 216
>gnl|CDD|146546 pfam03965, Pencillinase_R, Penicillinase repressor. The
penicillinase repressor negatively regulates expression
of the penicillinase gene. The N-terminal region of this
protein is involved in operator recognition, while the
C-terminal is responsible for dimerisation of the
protein.
Length = 115
Score = 28.7 bits (65), Expect = 4.3
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 66 TVGTFEMAKHLAKHGLFTTI-----HKYYTL---EEWKA----------FAVQNPDVIKH 107
TV T + L K GL + + Y L EE A F ++ +
Sbjct: 37 TVKT--LLTRLVKKGLLSREKDGRAYIYSPLVSREEAVASAVKQLLDRLFGGSVGALVAN 94
Query: 108 VAVSSGISAKDLAGLKEILAA 128
+S D+ L+E+L
Sbjct: 95 FVEREKLSPDDIEELRELLEE 115
>gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and
Dihydropyrimidine dehydrogenase (DHPD) FMN-binding
domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
DHPD catalyzes the first step in pyrimidine degradation:
the NADPH-dependent reduction of uracil and thymine to
the corresponding 5,6-dihydropyrimidines. DHPD contains
two FAD, two FMN and eight [4Fe-4S] clusters, arranged
in two electron transfer chains that pass its
homodimeric interface twice. Two of the Fe-S clusters
show a hitherto unobserved coordination involving a
glutamine residue.
Length = 289
Score = 29.6 bits (67), Expect = 4.9
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 366 TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409
L A + I + GG S DV + + AGA V +
Sbjct: 229 ALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272
Score = 28.9 bits (65), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 446 GGCTSPGDVAKAMGAGADFVMLG 468
GG S DV + + AGA V +
Sbjct: 250 GGIDSGEDVLEMLMAGASAVQVA 272
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 29.5 bits (67), Expect = 4.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
+VD G +P D A+AM GAD V+L
Sbjct: 186 IVDAGIGTPSDAAQAMELGADAVLL 210
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin
system. Members of this protein family possess an
N-terminal heme-binding domain and C-terminal
flavodehydrogenase domain, and share homology to yeast
flavocytochrome b2, to E. coli L-lactate dehydrogenase
[cytochrome], to (S)-mandelate dehydrogenase, etc. This
enzyme appears only in the context of the mycofactocin
system. Interestingly, it is absent from the four
species detected so far with mycofactocin but without an
F420 biosynthesis system.
Length = 385
Score = 29.7 bits (67), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 379 DVIKHVADGGCTSPGDVAKAMGAGADFVMLG-----GMFAG 414
D ++ + DGG DV KA+ GA VM+G G+ A
Sbjct: 301 DQVEVLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAAN 341
Score = 29.7 bits (67), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLG-----GMFAG 473
++DGG DV KA+ GA VM+G G+ A
Sbjct: 306 LLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAAN 341
>gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane
dioxygenase [General function prediction only].
Length = 336
Score = 29.6 bits (67), Expect = 5.3
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL------- 440
+ + KA AGAD V+ G AG + G +L E F LV ++ +
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDL---EVSTFALVPEVVDAVDGIPVIA 189
Query: 441 -GGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473
GG+ DG +A A+ GAD V +G F
Sbjct: 190 AGGIADG-----RGIAAALALGADGVQMGTRFLA 218
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 29.7 bits (68), Expect = 6.9
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 110 VSSG-ISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVD 149
++ G + +DLA L++ L ALPE++ + ++ + +
Sbjct: 354 IALGRANPRDLAALRDSLEALPELKELLAELDSPLLAELAE 394
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 28.5 bits (64), Expect = 7.1
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 122 LKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG 181
+ L L + I LD + +T +FV R+ E Y +++ + L L G
Sbjct: 19 ALKALPELKPVPVIFLDTGYEFPET-YEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKG 77
>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P)
binding protein, was intially identified as a
chloroplast reductase activity, catalyzing the electron
transfer from reduced iron-sulfur protein ferredoxin to
NADP+ as the final step in the electron transport
mechanism of photosystem I. FNR transfers electrons from
reduced ferredoxin to FAD (forming FADH2 via a
semiquinone intermediate) and then transfers a hydride
ion to convert NADP+ to NADPH. FNR has since been shown
to utilize a variety of electron acceptors and donors
and has a variety of physiological functions including
nitrogen assimilation, dinitrogen fixation, steroid
hydroxylation, fatty acid metabolism, oxygenase
activity, and methane assimilation in many organisms.
FNR has an NAD(P)-binding sub-domain of the alpha/beta
class and a discrete (usually N-terminal) flavin
sub-domain which vary in orientation with respect to the
NAD(P) binding domain. The N-terminal moeity may contain
a flavin prosthetic group (as in flavoenzymes) or use
flavin as a substrate. Because flavins such as FAD can
exist in oxidized, semiquinone (one- electron reduced),
or fully reduced hydroquinone forms, FNR can interact
with one and 2 electron carriers. FNR has a strong
preference for NADP(H) vs NAD(H).
Length = 223
Score = 29.0 bits (65), Expect = 7.2
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 72 MAKHLAKHGLFTTIHKYYT---------LEEWKAFAVQNPDVIKHVAVSSGISAKDLAGL 122
M +HLA I Y L+E + A + P+ +A+S AK G
Sbjct: 115 MLRHLAADKPGGEITLLYGARTPADLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGG 174
Query: 123 KEILAALPEIEYICLDVANGYT---QTFVDFVRRI 154
+ A A Y VR
Sbjct: 175 RIDREAEILALLPDDSGALVYICGPPAMAKAVREA 209
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 28.4 bits (64), Expect = 7.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELI 178
L L+E L A +I I LD N + + V + E + ++ +T + V E
Sbjct: 90 LEELEEALEAGADI--IMLD--NFSPEEVREAVEELDERAGRVLLEVSGGITLDNVLEYA 145
Query: 179 LSGADVIKVGIGPGSV 194
+G DVI VG SV
Sbjct: 146 KTGVDVISVGALTHSV 161
>gnl|CDD|236051 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
Length = 334
Score = 29.1 bits (66), Expect = 7.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVML 408
A G DV K + AGAD VM+
Sbjct: 244 ATTGVHDAEDVIKMLLAGADVVMI 267
>gnl|CDD|225722 COG3181, COG3181, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 319
Score = 28.8 bits (65), Expect = 8.3
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
Y TL++ A+A +P + G G+ + G +FA +G ++
Sbjct: 133 PYKTLKDLVAYAKADPGSVI-GGGS------------GLGSADHLAGALFA--KAAGIKI 177
Query: 423 TNIEYM-FFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAG 461
T + Y + + LGG VD G T+ ++ + +G
Sbjct: 178 TYVPYKGGGEA---LTALLGGHVDAGSTNLSELLSQVKSG 214
>gnl|CDD|234907 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional.
Length = 221
Score = 28.6 bits (65), Expect = 9.1
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG--GELTNIEYMFFPLVGDMNSYLGG 442
AD C++ + A G DF+ G SG E E F L+ ++ +G
Sbjct: 124 AD--CSTLEEGLAAQKLGFDFI-------GTTLSGYTEETKKPEEPDFALLKELLKAVGC 174
Query: 443 VV--DGGCTSPGDVAKAMGAGADFVMLGG 469
V +G +P KA+ GA V++GG
Sbjct: 175 PVIAEGRINTPEQAKKALELGAHAVVVGG 203
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 28.9 bits (65), Expect = 9.8
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 545 VGASKLKELPRR--ATF---IRCTAQLNNVNDTVQ-------DILGGLRSACTYVGASKL 592
VGA+ + E R + F I C+ + + + ++ D+ G R + T +L
Sbjct: 196 VGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRL 255
Query: 593 KELPRRATFIRCT-AQLNNVA---AEGKTVQVPYRGDVNDT--VQDILGG 636
KE AT I + + L NV +GK+ +PYR D T +QD LGG
Sbjct: 256 KE----ATKINLSLSALGNVISALVDGKSTHIPYR-DSKLTRLLQDSLGG 300
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,624,494
Number of extensions: 3480150
Number of successful extensions: 4271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4207
Number of HSP's successfully gapped: 229
Length of query: 671
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 568
Effective length of database: 6,369,140
Effective search space: 3617671520
Effective search space used: 3617671520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)