RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3862
(671 letters)
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 323 bits (829), Expect = e-105
Identities = 152/268 (56%), Positives = 185/268 (69%), Gaps = 53/268 (19%)
Query: 13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
++ LDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 14 LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 73
Query: 73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
AK L K LFT +HK+Y+L +W+ FA QNPD ++H+A SSG + D L++IL A+P++
Sbjct: 74 AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 133
Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
+YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 134 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 193
Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
SV CTTR
Sbjct: 194 SV-----------------------------------------------------CTTRK 200
Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
KTGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 201 KTGVGYPQLSAVMECADAAHGLKGHIIS 228
Score = 223 bits (571), Expect = 2e-67
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK KLFYGMSS AM K+
Sbjct: 229 DGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKY 288
Query: 505 AGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
AGGVAEYRA+EGKTV+VP++GDV T++DILGG+RS CTYVGA+KLKEL RR TFIR T
Sbjct: 289 AGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQ 348
Query: 565 QLN 567
Q+N
Sbjct: 349 QVN 351
Score = 146 bits (371), Expect = 5e-39
Identities = 69/123 (56%), Positives = 87/123 (70%), Gaps = 5/123 (4%)
Query: 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 348
++ LDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 14 LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 73
Query: 349 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKA-----MGAGA 403
AK L K LFT +HK+Y+L +W+ FA QNPD ++H+A T D +
Sbjct: 74 AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 133
Query: 404 DFV 406
++
Sbjct: 134 KYI 136
Score = 94.6 bits (236), Expect = 3e-21
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666
A+EGKTV+VP++GDV T++DILGG+RS CTYVGA+KLKEL RR TFIR T Q+N
Sbjct: 297 ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVN 351
Score = 85.0 bits (211), Expect = 5e-18
Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE---YMFF---PLVGDMN 437
++DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGEL + Y F M
Sbjct: 227 ISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMK 286
Query: 438 SYLGGVVD 445
Y GGV +
Sbjct: 287 KYAGGVAE 294
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 262 bits (673), Expect = 2e-82
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 65/276 (23%)
Query: 7 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
+ + D++D+ L P + + SRSE D T T +P++ ANM T
Sbjct: 3 SHHHHHHM-GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFK-----LPVVPANMQT 56
Query: 67 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEIL 126
+ +A +LA++ F +H++ E+ +F ++S G+ + ++++
Sbjct: 57 IIDERIATYLAENNYFYIMHRFQP-EKRISFIRDMQSRGLIASISVGVKEDEYEFVQQLA 115
Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
A EYI +D+A+G++ ++ ++ I++ P+ +IAGNV T E V EL +GAD K
Sbjct: 116 AEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATK 175
Query: 187 VGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246
VGIGPG V
Sbjct: 176 VGIGPGKV---------------------------------------------------- 183
Query: 247 VCTTRLKTGVGYP--QFSAVLECADAAHGLGGHIIS 280
C T++KTG G Q +A+ CA AA II+
Sbjct: 184 -CITKIKTGFGTGGWQLAALRWCAKAA---SKPIIA 215
Score = 179 bits (456), Expect = 5e-51
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG + GDVAK++ GA VM+G +FAGH++S GE IEKDGK K ++G +S
Sbjct: 216 DGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQK--- 272
Query: 505 AGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
E + EGK + V ++G + DT+ ++ L+S+ +Y G +KL + R ++
Sbjct: 273 ----GEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSI-RTVDYVVVKN 327
Query: 565 Q 565
Sbjct: 328 S 328
Score = 117 bits (296), Expect = 4e-29
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 283 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 342
+ + D++D+ L P + + SRSE D T T +P++ ANM T
Sbjct: 3 SHHHHHHM-GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFK-----LPVVPANMQT 56
Query: 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVA 385
+ +A +LA++ F +H++ E+ +F +
Sbjct: 57 IIDERIATYLAENNYFYIMHRFQP-EKRISFIRDMQSRGLIAS 98
Score = 79.6 bits (197), Expect = 3e-16
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG + GDVAK++ GA VM+G +FAGH++S GE
Sbjct: 214 IADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGET 252
Score = 78.4 bits (194), Expect = 7e-16
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 605 TAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664
+ EGK + V ++G + DT+ ++ L+S+ +Y G +KL + R ++
Sbjct: 270 FQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSI-RTVDYVVVKNS 328
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 238 bits (610), Expect = 6e-73
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
++ D + F DV+L P + +SR V+ T T +P+I+ANMDT+ M
Sbjct: 2 VMTDQAITFDDVLLVPSYNHHESRRVVETTSTDRLGKL---TLNLPVISANMDTITESNM 58
Query: 73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
A + G +H++ T+EE V VS G + +L + + A
Sbjct: 59 ANFMHSKGAMGALHRFMTIEENIQEF---KKCKGPVFVSVGCTENELQRAEALRDA--GA 113
Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
++ C+DVA+ + + ++ +R++ I+AGNV T + L GAD+IK GIG G
Sbjct: 114 DFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGG 173
Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
SV C+TR+
Sbjct: 174 SV-----------------------------------------------------CSTRI 180
Query: 253 KTGVGYPQFSAVLECADAAHGL---GG 276
KTG G P + + +C+ A + GG
Sbjct: 181 KTGFGVPMLTCIQDCSRADRSIVADGG 207
Score = 199 bits (509), Expect = 2e-58
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEK-DGKKVKLFYGMSSTTAMDK 503
DGG + GD+ KA+ GADFVM+GGM AG + GE+ +K DG KVK + GM+S A +
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEA 264
Query: 504 HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 563
G + E++ AEG +VP++ + + + DI+GGLRS TY GA + EL R+ ++ T
Sbjct: 265 FLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVT 324
Query: 564 A 564
Sbjct: 325 Q 325
Score = 101 bits (254), Expect = 2e-23
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 348
++ D + F DV+L P + +SR V+ T T +P+I+ANMDT+ M
Sbjct: 2 VMTDQAITFDDVLLVPSYNHHESRRVVETTSTDRLGKL---TLNLPVISANMDTITESNM 58
Query: 349 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKA---MGAGADF 405
A + G +H++ T+EE V + ++ +A AGADF
Sbjct: 59 ANFMHSKGAMGALHRFMTIEENIQEF---KKCKGPVFVSVGCTENELQRAEALRDAGADF 115
Query: 406 VML 408
+
Sbjct: 116 FCV 118
Score = 85.4 bits (212), Expect = 5e-18
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
AEG +VP++ + + + DI+GGLRS TY GA + EL R+ ++ T
Sbjct: 274 TAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVTQ 325
Score = 80.0 bits (198), Expect = 2e-16
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEY 427
VADGG + GD+ KA+ GADFVM+GGM AG + GE+ +
Sbjct: 203 VADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEV--FQK 244
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 123 bits (310), Expect = 1e-30
Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 70/274 (25%)
Query: 12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
+I + L F DV+L P ST+ + D+ T + +P+++A+MDTV
Sbjct: 8 RIAKEA-LTFDDVLLVPAHSTV-LPNTADLRTRLTKNIALN----IPMVSASMDTVTEAR 61
Query: 72 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH-----VAVSSGISAKDLAGLKEIL 126
+A LA+ G IHK ++E+ +K V + G + + +K ++
Sbjct: 62 LAIALAQEGGIGFIHKNMSIEQ----QAAQVHQVKISGGLRVGAAVGAAPGNEERVKALV 117
Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
A ++ + +D ++G+++ + +R R YP II GNV T E LI +G +K
Sbjct: 118 EA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVK 175
Query: 187 VGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246
VGIGPGS+CTTR +VT
Sbjct: 176 VGIGPGSICTTR----------------------IVT----------------------- 190
Query: 247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
GVG PQ +A+ + A A+ G +I+
Sbjct: 191 --------GVGVPQITAIADAAGVANEYGIPVIA 216
Score = 111 bits (281), Expect = 6e-27
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD++KA+ AGA VM+G MFAG +++ GE+I G+ K + GM S AM K
Sbjct: 217 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK- 275
Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
G Y A K V ++ Y+G + + + +GGLRS G++ +++L
Sbjct: 276 -GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT 334
Query: 556 RATFIRCTA 564
+A F+R +
Sbjct: 335 KAQFVRISG 343
Score = 54.6 bits (132), Expect = 5e-08
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG ++ Y+G + + + +GGLRS G++ +++L +A F+R +
Sbjct: 294 EGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISG 343
Score = 33.4 bits (77), Expect = 0.20
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
+I + L F DV+L P ST+ + D+ T + +P+++A+MDTV
Sbjct: 8 RIAKEA-LTFDDVLLVPAHSTV-LPNTADLRTRLTKNIALN----IPMVSASMDTVTEAR 61
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGAD 404
+A LA+ G IHK ++E+ +K G V A+GA
Sbjct: 62 LAIALAQEGGIGFIHKNMSIEQ----QAAQVHQVK---ISGGLR---VGAAVGAAPG 108
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 116 bits (293), Expect = 2e-28
Identities = 81/277 (29%), Positives = 119/277 (42%), Gaps = 73/277 (26%)
Query: 9 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
M K I L F+D++L P S + R EV + T S K +P+I++ MDTV
Sbjct: 4 MGTKNIGKG-LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 57
Query: 69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH-----VAVSSGISAKDLAGLK 123
MA +A+ G IHK +E V +K+ V + G++ + A K
Sbjct: 58 EHLMAVGMARLGGIGIIHKNMDMES----QVNEVLKVKNSGGLRVGAAIGVNEIERA--K 111
Query: 124 EILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGAD 183
++ A ++ I LD A+G++ + ++ I+ D
Sbjct: 112 LLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMN----------------------ID 147
Query: 184 VIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIG 243
VI GNVVT E +ELI +GAD IKVGIG
Sbjct: 148 VI--------------------------------VGNVVTEEATKELIENGADGIKVGIG 175
Query: 244 PGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
PGS+CTTR+ GVG PQ +A+ +C+ A G II+
Sbjct: 176 PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212
Score = 113 bits (284), Expect = 2e-27
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ GA VM+G + AG ++S GE K + GM S AM
Sbjct: 213 DGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS- 271
Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
G Y + E K V +V Y+G++ V ++GGLRS Y+G++ ++EL +
Sbjct: 272 -GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWK 330
Query: 556 RATFIRCTA 564
+++++ T
Sbjct: 331 KSSYVEITT 339
Score = 54.5 bits (132), Expect = 4e-08
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG +V Y+G++ V ++GGLRS Y+G++ ++EL ++++++ T
Sbjct: 290 EGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITT 339
Score = 34.5 bits (80), Expect = 0.099
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
M K I L F+D++L P S + R EV + T S K +P+I++ MDTV
Sbjct: 4 MGTKNIGKG-LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 57
Query: 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIK 382
MA +A+ G IHK +E V +K
Sbjct: 58 EHLMAVGMARLGGIGIIHKNMDMES----QVNEVLKVK 91
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 114 bits (287), Expect = 2e-27
Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 49/291 (16%)
Query: 9 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
M KI + L F DV L P++S++ EV + T +N +P +++ MDTV
Sbjct: 1 MPNKITKE-ALTFDDVSLIPRKSSVLPS-EVSLKTQLT-KN---ISLNIPFLSSAMDTVT 54
Query: 69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAA 128
+MA +AK G IHK ++E I+ V + G
Sbjct: 55 ESQMAIAIAKEGGIGIIHKNMSIEA-------QRKEIEKVKTYKFQKTINTNGDTNE-QK 106
Query: 129 LPEIEYICLDVANGYTQ---TFVDFVRRIREMYPK-------HVIIAGNVVTG----EMV 174
A + + + + + +P + + V E V
Sbjct: 107 PEIFT------AKQHLEKSDAYKNAEHKED--FPNACKDLNNKLRVGAAVSIDIDTIERV 158
Query: 175 EELILSGADVIKVGIGPG---SVCTT--RLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEE 229
EEL+ + D++ + G + ++K K + LI AGN+VT E +
Sbjct: 159 EELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLI--------AGNIVTKEAALD 210
Query: 230 LILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
LI GAD +KVGIGPGS+CTTR+ GVG PQ +A+ + +A + II+
Sbjct: 211 LISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIA 261
Score = 109 bits (274), Expect = 1e-25
Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GDV KA+ AGAD VM+G +FAG +S E I +GKK K + GM S +AM +
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR- 320
Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
G + Y K V VPY G + D + + GGL S Y+GA+ + +L
Sbjct: 321 -GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLK 379
Query: 555 RRATFIRCTA 564
+ F++ +
Sbjct: 380 INSKFVKISH 389
Score = 57.2 bits (139), Expect = 7e-09
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GDV KA+ AGAD VM+G +FAG +S E
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEE 298
Score = 54.5 bits (132), Expect = 6e-08
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG VPY G + D + + GGL S Y+GA+ + +L + F++ +
Sbjct: 340 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISH 389
Score = 38.3 bits (90), Expect = 0.008
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
M KI + L F DV L P++S++ EV + T +N +P +++ MDTV
Sbjct: 1 MPNKITKE-ALTFDDVSLIPRKSSVLPS-EVSLKTQLT-KN---ISLNIPFLSSAMDTVT 54
Query: 345 TFEMAKHLAKHG 356
+MA +AK G
Sbjct: 55 ESQMAIAIAKEG 66
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 113 bits (286), Expect = 7e-27
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG + G V KA+ GA VM+G + A ++ GE DG ++K + GM S AM+K
Sbjct: 364 DGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS 423
Query: 505 AGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL---- 553
+ Y + A+G + + +G + V ++ G++ C +GA L L
Sbjct: 424 SSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMM 483
Query: 554 -PRRATFIRCTA 564
F + T
Sbjct: 484 YSGELKFEKRTM 495
Score = 97.6 bits (244), Expect = 2e-21
Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 53/145 (36%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
I LD + G + + V I++ YP +I GNVVT + LI +G D ++VG+G GS+
Sbjct: 271 IVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSI 330
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
C T+ V
Sbjct: 331 CITQ----------------------EV-------------------------------M 337
Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
G PQ +AV + A+ A G II
Sbjct: 338 ACGRPQGTAVYKVAEYARRFGVPII 362
Score = 57.2 bits (139), Expect = 1e-08
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 36/120 (30%)
Query: 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL-------------------------FTTIH 362
+ Y + +I N V T AK+L G+ T ++
Sbjct: 292 QKYPHLQVIGGN---VVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVY 348
Query: 363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
K E + F V P +I ADGG + G V KA+ GA VM+G + A ++ GE
Sbjct: 349 KVA--EYARRFGV--P-II---ADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 400
Score = 50.2 bits (121), Expect = 2e-06
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL-----PRRATFIRCTA 663
A+G + + +G + V ++ G++ C +GA L L F + T
Sbjct: 440 AQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTM 495
Score = 42.5 bits (101), Expect = 3e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L + D ++ P + EVD+T T + + KT P+I++ MDTV +MA +A
Sbjct: 30 LTYNDFLILPGFIDFIAD-EVDLTSALTRKITLKT----PLISSPMDTVTEADMAIAMAL 84
Query: 79 HGLFTTIHKYYTLEE 93
G IH T E
Sbjct: 85 MGGIGFIHHNCTPEF 99
Score = 42.5 bits (101), Expect = 3e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L + D ++ P + EVD+T T + + KT P+I++ MDTV +MA +A
Sbjct: 30 LTYNDFLILPGFIDFIAD-EVDLTSALTRKITLKT----PLISSPMDTVTEADMAIAMAL 84
Query: 355 HGLFTTIHKYYTLEE 369
G IH T E
Sbjct: 85 MGGIGFIHHNCTPEF 99
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 113 bits (285), Expect = 1e-26
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
DGG + A+ GADF+MLG FA ++S + +G +K ++G S+ A +
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQ 417
Query: 504 --HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 561
GG + EG VPY G + D V+ L ++S GA + +L +A
Sbjct: 418 RYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITL 477
Query: 562 CTA 564
++
Sbjct: 478 VSS 480
Score = 100 bits (251), Expect = 2e-22
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
+C+D ++G+++ + IRE Y V V
Sbjct: 258 LCIDSSDGFSEWQKITIGWIREKYGDKV--------------------KVG--------- 288
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
AGN+V GE L +GAD IK+GIG GS+C TR +
Sbjct: 289 -----------------------AGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQK 325
Query: 255 GVGYPQFSAVLECADAAH 272
G+G Q +AV++ +
Sbjct: 326 GIGRGQATAVIDVVAERN 343
Score = 59.5 bits (145), Expect = 2e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE 426
+DGG + A+ GADF+MLG FA ++S I
Sbjct: 356 CSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTIN 398
Score = 54.1 bits (131), Expect = 8e-08
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG VPY G + D V+ L ++S GA + +L +A ++
Sbjct: 431 EGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSS 480
Score = 48.3 bits (116), Expect = 6e-06
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9 MAQKIINDIKLDFKDVMLRPKRSTLKSR-SEVDITRTFTFRNSGKTYQ---GVPIIAANM 64
MA K N+ F + +L P ST+ S V+++ G+ + +P+++A M
Sbjct: 1 MA-KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIM 59
Query: 65 DTVGTFEMAKHLAKHGLFTTIHKYYTLEE 93
+V +MA LA+ G + I ++E
Sbjct: 60 QSVSGEKMAIALAREGGISFIFGSQSIES 88
Score = 48.3 bits (116), Expect = 6e-06
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSR-SEVDITRTFTFRNSGKTYQ---GVPIIAANM 340
MA K N+ F + +L P ST+ S V+++ G+ + +P+++A M
Sbjct: 1 MA-KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIM 59
Query: 341 DTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369
+V +MA LA+ G + I ++E
Sbjct: 60 QSVSGEKMAIALAREGGISFIFGSQSIES 88
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 110 bits (277), Expect = 3e-26
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ GA VM+G + AG ++S GE K + GM S AM
Sbjct: 252 DGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS- 310
Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
G Y + E K V +V Y+G++ V ++GGLRS Y+G++ ++EL +
Sbjct: 311 -GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWK 369
Query: 556 RATFIRCTA 564
+++++ T
Sbjct: 370 KSSYVEITT 378
Score = 109 bits (275), Expect = 7e-26
Identities = 80/286 (27%), Positives = 119/286 (41%), Gaps = 51/286 (17%)
Query: 9 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
M K I L F+D++L P S + R EV + T S K +P+I++ MDTV
Sbjct: 1 MGTKNIGK-GLTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 54
Query: 69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAA 128
MA +A+ G IHK +E V+ + K+ E +
Sbjct: 55 EHLMAVGMARLGGIGIIHKNMDMES---------------QVNEVLKVKNWISNLEKNES 99
Query: 129 LPEIEYICLDVANGYTQ--TFVDFVRRIREMYPK-------HVIIAGNVVTGEM--VEEL 177
P+ ++ T Y + + + E+ + L
Sbjct: 100 TPDQ-----NLDKESTDGKDTKSNNNIDA--YSNENLDNKGRLRVGAAIGVNEIERAKLL 152
Query: 178 ILSGADVIKV----GIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS 233
+ +G DVI + G + T + + +I GNVVT E +ELI +
Sbjct: 153 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVI--------VGNVVTEEATKELIEN 204
Query: 234 GADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
GAD IKVGIGPGS+CTTR+ GVG PQ +A+ +C+ A G II
Sbjct: 205 GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPII 250
Score = 57.6 bits (140), Expect = 6e-09
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+ KA+ GA VM+G + AG ++S GE
Sbjct: 250 IADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK 288
Score = 54.5 bits (132), Expect = 6e-08
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG +V Y+G++ V ++GGLRS Y+G++ ++EL ++++++ T
Sbjct: 329 EGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITT 378
Score = 30.6 bits (70), Expect = 1.5
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
M K I L F+D++L P S + R EV + T S K +P+I++ MDTV
Sbjct: 1 MGTKNIGK-GLTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 54
Query: 345 TFEMAKHLAKHGLFTTIHK 363
MA +A+ G IHK
Sbjct: 55 EHLMAVGMARLGGIGIIHK 73
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 109 bits (276), Expect = 1e-25
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 9/127 (7%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ AGA+ VM+G +FAG +++ GE I G+K K + GM S AM
Sbjct: 346 DGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRS- 404
Query: 505 AGGVAEY-RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
G Y + E K V VPY+G V D V ++GGLRS Y+GA +KEL +A
Sbjct: 405 -GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463
Query: 558 TFIRCTA 564
F++ T
Sbjct: 464 VFVKITP 470
Score = 102 bits (257), Expect = 3e-23
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 53/145 (36%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
I +D A+G+++ ++ + I+ YP ++AGNV T E E LI +GAD +KVG+GPGS+
Sbjct: 253 IVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSI 312
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
CTTR VV
Sbjct: 313 CTTR----------------------VV-------------------------------A 319
Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
GVG PQ +AV+EC++ A II
Sbjct: 320 GVGVPQLTAVMECSEVARKYDVPII 344
Score = 58.3 bits (142), Expect = 5e-09
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+ KA+ AGA+ VM+G +FAG +++ GE
Sbjct: 344 IADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGET 382
Score = 54.4 bits (132), Expect = 6e-08
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG VPY+G V D V ++GGLRS Y+GA +KEL +A F++ T
Sbjct: 421 EGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKITP 470
Score = 40.9 bits (97), Expect = 0.001
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L F DV+L P+ S + + +V I T R +P+++A MDTV +AK LA+
Sbjct: 17 LTFDDVLLVPQYSEVLPK-DVKIDTRLT-RQ---IRINIPLVSAAMDTVTEAALAKALAR 71
Query: 79 HGLFTTIHKYYTLEE 93
G IHK T +E
Sbjct: 72 EGGIGIIHKNLTPDE 86
Score = 40.9 bits (97), Expect = 0.001
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L F DV+L P+ S + + +V I T R +P+++A MDTV +AK LA+
Sbjct: 17 LTFDDVLLVPQYSEVLPK-DVKIDTRLT-RQ---IRINIPLVSAAMDTVTEAALAKALAR 71
Query: 355 HGLFTTIHKYYTLEE 369
G IHK T +E
Sbjct: 72 EGGIGIIHKNLTPDE 86
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 109 bits (275), Expect = 2e-25
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ AGAD VMLG + AG ++ G+ + +G+K K + GM S AM K
Sbjct: 334 DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMK- 392
Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
GG Y K V VPYRG V++ + ++GGL++ YVGA ++EL
Sbjct: 393 -GGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELK 451
Query: 555 RRATFIRCTA 564
+ F+ T
Sbjct: 452 EKGEFVIITH 461
Score = 96.0 bits (240), Expect = 4e-21
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 170 TGEMVEELILSGADVIKV----GIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGE 225
+ EL +G DVI V ++ + + + D I GN+ +
Sbjct: 229 DIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI--------VGNIANPK 280
Query: 226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
V++L AD +KVGIGPGS+CTTR+ GVG PQ +AV AD A G ++I
Sbjct: 281 AVDDLT--FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVI 332
Score = 57.9 bits (141), Expect = 6e-09
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+ KA+ AGAD VMLG + AG ++ G+
Sbjct: 332 IADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKE 370
Score = 54.8 bits (133), Expect = 5e-08
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG VPYRG V++ + ++GGL++ YVGA ++EL + F+ T
Sbjct: 412 EGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITH 461
Score = 42.1 bits (100), Expect = 5e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ-GVPIIAANMDTVGTFEMAKHLA 77
F DV+L P+ + ++ + +VD++ T + +PI++A MDTV +EMA +A
Sbjct: 15 YTFDDVLLIPQATEVEPK-DVDVSTRIT-----PNVKLNIPILSAAMDTVTEWEMAVAMA 68
Query: 78 KHGLFTTIHKYYTLEE 93
+ G IH+ +EE
Sbjct: 69 REGGLGVIHRNMGIEE 84
Score = 42.1 bits (100), Expect = 5e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ-GVPIIAANMDTVGTFEMAKHLA 353
F DV+L P+ + ++ + +VD++ T + +PI++A MDTV +EMA +A
Sbjct: 15 YTFDDVLLIPQATEVEPK-DVDVSTRIT-----PNVKLNIPILSAAMDTVTEWEMAVAMA 68
Query: 354 KHGLFTTIHKYYTLEE 369
+ G IH+ +EE
Sbjct: 69 REGGLGVIHRNMGIEE 84
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 109 bits (275), Expect = 2e-25
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ AGA VMLG MFAG +S GE G++ K++ GM S AM+K
Sbjct: 365 DGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEK- 423
Query: 505 AGGVAEY-RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
G Y + K V +VPY+G + DTV ++GGLR+ Y GA L+ L A
Sbjct: 424 -GSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENA 482
Query: 558 TFIRCTA 564
FIR +
Sbjct: 483 QFIRMSG 489
Score = 102 bits (257), Expect = 3e-23
Identities = 50/145 (34%), Positives = 64/145 (44%), Gaps = 53/145 (36%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
I LD A+G++Q +D V+ +R YP IIAGNV T E + LI +GA+V+KVGIGPGS+
Sbjct: 272 IVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSI 331
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
CTTR VV
Sbjct: 332 CTTR----------------------VV-------------------------------A 338
Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
GVG PQ +AV +CA A G +I
Sbjct: 339 GVGVPQLTAVYDCATEARKHGIPVI 363
Score = 58.3 bits (142), Expect = 5e-09
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+ KA+ AGA VMLG MFAG +S GE
Sbjct: 363 IADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGET 401
Score = 54.8 bits (133), Expect = 6e-08
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG +VPY+G + DTV ++GGLR+ Y GA L+ L A FIR +
Sbjct: 443 EG---RVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSG 489
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 266 ECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRN 325
+ G K + + L F DV+L P +S + R EV + + +
Sbjct: 7 HSSGVDLGTENLYFQSNAMWESKFVKE-GLTFDDVLLVPAKSDVLPR-EVSVKTVLS-ES 63
Query: 326 SGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369
+P+I+A MDTV +MA +A+ G IHK ++E+
Sbjct: 64 ---LQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQ 104
Score = 41.7 bits (99), Expect = 7e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 7 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
K + + L F DV+L P +S + R EV + + + +P+I+A MDT
Sbjct: 24 AMWESKFVKE-GLTFDDVLLVPAKSDVLPR-EVSVKTVLS-ES---LQLNIPLISAGMDT 77
Query: 67 VGTFEMAKHLAKHGLFTTIHKYYTLEE 93
V +MA +A+ G IHK ++E+
Sbjct: 78 VTEADMAIAMARQGGLGIIHKNMSIEQ 104
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 109 bits (274), Expect = 2e-25
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD+ KA+ AG + VMLG MFAG D++ GE G+K K + GM S AM K
Sbjct: 342 DGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKK- 400
Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
G Y K V +V Y+G +D V +LGG+RS YVGA ++EL
Sbjct: 401 -GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELH 459
Query: 555 RRATFIRCTA 564
A F+ +
Sbjct: 460 ENAQFVEMSG 469
Score = 102 bits (258), Expect = 3e-23
Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 53/145 (36%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
I +D A+G++ + + IR +P +IAGN+ T E L +G DV+KVGIGPGS+
Sbjct: 249 IVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSI 308
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
CTTR VV
Sbjct: 309 CTTR----------------------VV-------------------------------A 315
Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
GVG PQ +A+ + A A G II
Sbjct: 316 GVGVPQVTAIYDAAAVAREYGKTII 340
Score = 58.2 bits (142), Expect = 5e-09
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD+ KA+ AG + VMLG MFAG D++ GE
Sbjct: 340 IADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGET 378
Score = 54.8 bits (133), Expect = 5e-08
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG +V Y+G +D V +LGG+RS YVGA ++EL A F+ +
Sbjct: 423 EG---RVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSG 469
Score = 42.8 bits (102), Expect = 3e-04
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 7 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
+ K + F DV+L P S + EVD+ N +PII A MDT
Sbjct: 1 SNWDTKFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA-DN---LTLNIPIITAAMDT 54
Query: 67 VGTFEMAKHLAKHGLFTTIHKYYTLEE 93
V +MA +A+ G IHK ++ E
Sbjct: 55 VTGSKMAIAIARAGGLGVIHKNMSITE 81
Score = 42.8 bits (102), Expect = 3e-04
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 283 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 342
+ K + F DV+L P S + EVD+ N +PII A MDT
Sbjct: 1 SNWDTKFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA-DN---LTLNIPIITAAMDT 54
Query: 343 VGTFEMAKHLAKHGLFTTIHKYYTLEE 369
V +MA +A+ G IHK ++ E
Sbjct: 55 VTGSKMAIAIARAGGLGVIHKNMSITE 81
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 108 bits (272), Expect = 4e-25
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
DGG GD++KA+ AGA VM+G MFAG +++ GE+I G+ K + GM S AM K
Sbjct: 340 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK- 398
Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
G Y A K V ++ Y+G + + + +GGLRS G++ +++L
Sbjct: 399 -GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT 457
Query: 556 RATFIRCTA 564
+A F+R +
Sbjct: 458 KAQFVRISG 466
Score = 101 bits (253), Expect = 1e-22
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 53/145 (36%)
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
+ +D ++G+++ + +R R YP II GNV T E LI +G +KVGIGPGS+
Sbjct: 247 LLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI 306
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
CTTR +V T
Sbjct: 307 CTTR----------------------IV-------------------------------T 313
Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
GVG PQ +A+ + A A+ G +I
Sbjct: 314 GVGVPQITAIADAAGVANEYGIPVI 338
Score = 57.9 bits (141), Expect = 5e-09
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
+ADGG GD++KA+ AGA VM+G MFAG +++ GE+
Sbjct: 338 IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEV 376
Score = 54.0 bits (131), Expect = 9e-08
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
EG ++ Y+G + + + +GGLRS G++ +++L +A F+R +
Sbjct: 420 EG---RIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISG 466
Score = 40.5 bits (96), Expect = 0.001
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
L F DV+L P ST+ D+ T +N +P+++A+MDTV +A LA+
Sbjct: 11 LTFDDVLLVPAHSTVLPN-TADLRTRLT-KN---IALNIPMVSASMDTVTEARLAIALAQ 65
Query: 79 HGLFTTIHKYYTLEE 93
G IHK ++E+
Sbjct: 66 EGGIGFIHKNMSIEQ 80
Score = 40.5 bits (96), Expect = 0.001
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
L F DV+L P ST+ D+ T +N +P+++A+MDTV +A LA+
Sbjct: 11 LTFDDVLLVPAHSTVLPN-TADLRTRLT-KN---IALNIPMVSASMDTVTEARLAIALAQ 65
Query: 355 HGLFTTIHKYYTLEE 369
G IHK ++E+
Sbjct: 66 EGGIGFIHKNMSIEQ 80
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 104 bits (262), Expect = 2e-24
Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 47/277 (16%)
Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
D+ + R T S+ +VD T +P + D + + E + K
Sbjct: 36 YSLDDISVVSSRRTRSSK-DVDTTWHI-----DAYKFDLPFMNHPSDALASPEFVIEMGK 89
Query: 79 HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLD 138
G I+ W A + + K +A + L A P +
Sbjct: 90 QGGLGVINAEGL---WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELL-- 144
Query: 139 VANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV---------GI 189
+ + ++R+ + E+ +I +GAD++ +
Sbjct: 145 ---------SERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVN 195
Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 249
G + + D +I AG V ++ +GA I VG G T
Sbjct: 196 TGGEALNLKEFIGSLDVPVI--------AGGVNDYTTALHMMRTGAVGIIVGGGE---NT 244
Query: 250 TRLKTGVGYPQFSAVLECADAAH-------GLGGHII 279
L G+ +A+ + A A G HII
Sbjct: 245 NSLALGMEVSMATAIADVAAARRDYLDETGGRYVHII 281
Score = 99.1 bits (247), Expect = 2e-22
Identities = 52/295 (17%), Positives = 93/295 (31%), Gaps = 32/295 (10%)
Query: 287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF 346
+ I + +++ TL+ + + I+A +
Sbjct: 109 DEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVR 168
Query: 347 EMAKHLAKHGL------FTTIHKYYTLEEWKAFAVQNP------DVIKHVADGGCTSPGD 394
E+A + K G T I + +A ++ VI G +
Sbjct: 169 EIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVI-----AGGVNDYT 223
Query: 395 VAKA-MGAGADFVMLGGMFAGHDQSGG----ELTNI----EYMFFPLVGDMNSYLGGVVD 445
A M GA +++GG + + G T I L Y+ + D
Sbjct: 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIAD 283
Query: 446 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHA 505
G + GDV KA+ GAD V+LG A +++ G+ + T
Sbjct: 284 GSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLD 343
Query: 506 GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI 560
AA + + V++ GGL+ A G + LK + + +
Sbjct: 344 E------AAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV 392
Score = 49.4 bits (118), Expect = 2e-06
Identities = 35/222 (15%), Positives = 64/222 (28%), Gaps = 32/222 (14%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
D+ + R T S+ +VD T +P + D + + E + K
Sbjct: 36 YSLDDISVVSSRRTRSSK-DVDTTWHI-----DAYKFDLPFMNHPSDALASPEFVIEMGK 89
Query: 355 HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAG 414
G I+ VI +G + +
Sbjct: 90 QGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQ----------------- 132
Query: 415 HDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAM-GAGADFVMLGGMFAG 473
+ + E + + +S V + ++A + AGAD +++ G
Sbjct: 133 --ELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGT-LI 189
Query: 474 HDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAE 515
+ E +K F G + AGGV +Y A
Sbjct: 190 SAEHVNTGGEAL--NLKEFIGSLDVPVI---AGGVNDYTTAL 226
Score = 45.6 bits (108), Expect = 3e-05
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 620 VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI 659
+ + V++ GGL+ A G + LK + + +
Sbjct: 353 LHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 45/328 (13%), Positives = 92/328 (28%), Gaps = 112/328 (34%)
Query: 131 EIEYICLDVANGYTQTFV---------DFVRRI---REMYPKHVIIAGNVVTG--EMVEE 176
E +Y D+ + + FV D + I E+ H+I++ + V+G +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWT 70
Query: 177 LILSGADVIKVGIGPG-----SVCTTRLKNKTSDFFLI--QFYSCI------PQA---GN 220
L+ ++++ + + +K + ++ + Q N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 221 VVTGEMVEELI-----LSGADVIKV----GIGPGSVCTTRLKTGVGYPQFSAVLECADAA 271
V + +L L A + + G G KT V A+ C
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTWV------ALDVCLSYK 175
Query: 272 --HGLGGHI--ISF--------LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITR 319
+ I ++ + M QK++ I ++ L+ S R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 320 TFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD 379
++ K Y+ ++ + V + W AF
Sbjct: 236 RL-LKS--KPYENCLLV---LLNV---------------------QNAKAWNAF------ 262
Query: 380 VIKHVADGGC-----TSPGDVAKAMGAG 402
+ C T V + A
Sbjct: 263 ------NLSCKILLTTRFKQVTDFLSAA 284
Score = 38.3 bits (88), Expect = 0.008
Identities = 50/458 (10%), Positives = 110/458 (24%), Gaps = 163/458 (35%)
Query: 6 LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD 65
+ M QK++ I ++ L+ S R ++ K Y+ ++ +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS--KPYENCLLV---LL 251
Query: 66 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ----------------NPDVIKHVA 109
V + W AF + + H++
Sbjct: 252 NV---------------------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 110 VSSGISAKDLAGLKEILA--------ALPEIEYIC----LDVA-------------NGYT 144
+ +K +L LP E + ++ + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-E-VLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 145 QTFVDFVRRI-------------REMY------PKHVIIAGNV-----------VTGEMV 174
D + I R+M+ P I + +V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 175 EELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSG 234
+L S+ + K T I + + ++
Sbjct: 409 NKLHKY------------SLVEKQPKESTISIPSIYLELKVKLENEY---ALHRSIV--- 450
Query: 235 ADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECAD---AAHGLGGHIISFLTAMAQKI-- 289
+ + D +H +G H+ + +++
Sbjct: 451 ---------------DHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKN--IEHPERMTL 492
Query: 290 INDIKLDFK--DVMLRPKRSTLKSRSEV-DITRTFTFRNSGKTYQG-----VPIIAANMD 341
+ LDF+ + +R + + + + + K Y+ P ++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL------KFYKPYICDNDPKYERLVN 546
Query: 342 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD 379
+ F L K KY L A+ D
Sbjct: 547 AILDF-----LPKIEENLICSKYTDLLR---IALMAED 576
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 45.7 bits (108), Expect = 2e-05
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 42/197 (21%)
Query: 277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPII 336
I++ + +I +K D+ S+V IT T +I
Sbjct: 47 DILAIKETVDLPVIGIVKRDYDH-------------SDVFITATSK-EVDELIESQCEVI 92
Query: 337 AANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVA 396
A +D TL+E ++ + + + +
Sbjct: 93 A--LDA----------TLQQ-----RPKETLDELVSYIRTHAPNV--EIMADIATVEEAK 133
Query: 397 KAMGAGADFV--MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG--VVDGGCTSPG 452
A G D++ L G + + + + D+ + + +G +P
Sbjct: 134 NAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQ-----FLKDVLQSVDAKVIAEGNVITPD 188
Query: 453 DVAKAMGAGADFVMLGG 469
+ M G ++GG
Sbjct: 189 MYKRVMDLGVHCSVVGG 205
Score = 42.2 bits (99), Expect = 2e-04
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 133 EYICLDVANG--YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
E I LD +T + V IR P +V I ++ T E + G D I +
Sbjct: 90 EVIALDATLQQRPKETLDELVSYIRTHAP-NVEIMADIATVEEAKNAARLGFDYIGTTLH 148
Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQA-------GNVVTGEMVEELILSGADVIKVG 241
+ T +DF + + GNV+T +M + ++ G VG
Sbjct: 149 GYTSYTQGQLLYQNDFQFL--KDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204
Score = 34.9 bits (80), Expect = 0.047
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 170 TGEMVEELILSGADVIKVGIGPGSVCTTRLK-NKTSDFFLIQFYSCIPQA---GNVVTGE 225
T + V+ELI S +VI + T + + +T D + + P ++ T E
Sbjct: 77 TSKEVDELIESQCEVIALD------ATLQQRPKETLDELVSYIRTHAPNVEIMADIATVE 130
Query: 226 MVEELILSGADVIKVGIGPGSVCTTRLKTG--VGYPQFSAVLECADAA 271
+ G D I G T G + F + + +
Sbjct: 131 EAKNAARLGFDYI----GTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 2e-05
Identities = 59/360 (16%), Positives = 95/360 (26%), Gaps = 142/360 (39%)
Query: 255 GVG---YPQFSA---VLECADA--AHGLGGHI------------ISFLTAMAQKI-INDI 293
G+G Y A V AD G I I F ++I N
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 294 KLDFKDVMLRPKRSTLKSRSEVDI-TRTFTFRNS----GKTY--QGVPIIAANMDTVGTF 346
+ F + ++ K T K E++ + ++TFR+ T Q P +
Sbjct: 1690 AMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--PALT-------LM 1739
Query: 347 EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFV 406
E A E+ K+ + D
Sbjct: 1740 EKA----------------AFEDLKSKGLIPADA-------------------------- 1757
Query: 407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVM 466
FAGH S G EY + L S + + V
Sbjct: 1758 ----TFAGH--SLG-----EY----------AAL--ASLADVMSIESLVEV-------VF 1787
Query: 467 LGGMFAGHDQSGGELIEKDGKKVKLFYGM--------SSTTAMDKHAGGVAEYRAAEGKT 518
GM EL + YGM +++ + + V G
Sbjct: 1788 YRGMTMQVAVPRDELGRSN-------YGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 519 VQVPYRGDVNDTV---QDILGG-------LRSACTYVGASKLK--ELPRRATFIRCTAQL 566
V++ VN V Q + G + + ++ K+ EL + + L
Sbjct: 1841 VEI-----VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 43.9 bits (103), Expect = 2e-04
Identities = 105/658 (15%), Positives = 177/658 (26%), Gaps = 229/658 (34%)
Query: 79 HG-LFTTIH----KYYTLEE-WKAFAVQNPDVIKHVA------------------VSSGI 114
HG L + ++ + + F P+ + A VSS +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 115 SAKDLAGLKEIL-AALPEIEYICL---DV-------ANGYTQTFVDFVRRIREMYPKHVI 163
+ ++L L E E L D+ T V I+
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TAR 130
Query: 164 IAGNVVTGEMVEELILSGADVIKVGI-----GPGSVCTTRLKNKTSDFF--LIQFYSCIP 216
I + + + G G+ T D+F L Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN---------TDDYFEELRDLYQ-TY 180
Query: 217 QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ---FSAVLECADAAHG 273
+V +LI A+ + + T L + Q LE
Sbjct: 181 HV-------LVGDLIKFSAETLS------ELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 274 ---LGGHIISF----LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNS 326
L IS + +A ++ L F LR
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-------------------YLK 268
Query: 327 GKTYQGVPIIAANM----DTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQN--PDV 380
G T ++ A D+ +F ++ A LF + + ++A+ + P +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPNTSLPPSI 323
Query: 381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL 440
++ + P ML S ++ V NS+L
Sbjct: 324 LEDSLENNEGVPSP------------MLS-------ISNLTQEQVQ----DYVNKTNSHL 360
Query: 441 GGVVDGGCTSPGD--VAKAMGAGAD-FVMLG-------------GMFA--GHDQSGGELI 482
P V ++ GA V+ G A G DQS I
Sbjct: 361 ----------PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---I 407
Query: 483 EKDGKKVKL---F----------YGMSSTTAM---DKHAGGVAEYRAAEGKTVQVPYRGD 526
+K+K F + + + D V + A + +Q+P
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNV-SFNAKD---IQIP---- 458
Query: 527 VNDTV--QDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVN-DTVQDILGGLRSA 583
V DT D LR + S + + + C +L V +T +
Sbjct: 459 VYDTFDGSD----LRV----LSGSISERI------VDCIIRLP-VKWETT------TQFK 497
Query: 584 CTYV------GASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILG 635
T++ GAS L L R +G V+V G ++ D G
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNK-------------DGTGVRVIVAGTLDINPDDDYG 542
Score = 37.7 bits (87), Expect = 0.013
Identities = 44/285 (15%), Positives = 87/285 (30%), Gaps = 105/285 (36%)
Query: 50 SGKTYQGVPIIAANM----DTVGTFEMAKHLAKHGLF---TTIHKYYTLEEWKAFAVQNP 102
G T ++ A D+ +F ++ A LF ++ Y ++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-- 325
Query: 103 DVIKH--------VAVSSGISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRR 153
D +++ +++S ++ + + + + + LP + + + + NG
Sbjct: 326 DSLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----------- 373
Query: 154 IREMYPKHVIIAGNVVT--GEMVEEL----ILSGADVIKVGIGPGSVCTTRLKNKTSDFF 207
K+++++G + G + L SG D ++ P S R K K S+ F
Sbjct: 374 -----AKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRI---PFS---ER-KLKFSNRF 420
Query: 208 L--------------------------IQFYSC---IPQAGNVVTG----EMVEELILSG 234
L + F + IP + G + +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERI 479
Query: 235 ADVI-----------KVGI------GPGSVC-----TTRLKTGVG 257
D I + GPG T R K G G
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Score = 36.2 bits (83), Expect = 0.041
Identities = 51/298 (17%), Positives = 80/298 (26%), Gaps = 122/298 (40%)
Query: 64 MDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLK 123
MD T + A+ + W A D H + G S +
Sbjct: 1633 MDLYKTSKAAQDV-----------------WNR-A----D--NHFKDTYGFS------IL 1662
Query: 124 EILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGAD 183
+I+ P I G +RIRE Y +I +V G++ E I +
Sbjct: 1663 DIVINNPVNLTIHFGGEKG---------KRIRENYSA--MIFETIVDGKLKTEKIFKEIN 1711
Query: 184 VIKVGI---GPGSVCT-TR----------------LKNKTSDFFLIQ----F-------Y 212
+ + T+ LK+K LI F Y
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK----GLIPADATFAGHSLGEY 1767
Query: 213 S---CIPQAG--------NVVT--GEMVEELI----LSGADVIKVGIGPGSVCTTRLKTG 255
+ + A VV G ++ + L ++ + I PG V
Sbjct: 1768 AALASL--ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----AS 1820
Query: 256 VGYPQFSAVLECADAAHG----------------LGGHIISFLTAM--AQKIINDIKL 295
V+E G G L A+ ++N IKL
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD----LRALDTVTNVLNFIKL 1874
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 46.1 bits (109), Expect = 2e-05
Identities = 40/253 (15%), Positives = 67/253 (26%), Gaps = 73/253 (28%)
Query: 330 YQGVPIIAANMDTVGTFEMAKHL--AKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADG 387
G + ++ + +A H+ + + + L E A + P + G
Sbjct: 131 RYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVG 190
Query: 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE---------YMFFPLVG---- 434
S V + G AG G +E + +G
Sbjct: 191 HGLSREAALALRDLPLAAVDVAG--AG----GTSWARVEEWVRFGEVRHPELCEIGIPTA 244
Query: 435 ----DMNSYLGGV---VDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK 487
++ L + GG + D AKA+ GAD + + G E
Sbjct: 245 RAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAE------- 297
Query: 488 KVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA 547
VA + + D L LR+A +GA
Sbjct: 298 -------------------RVAAW-------------------IGDYLEELRTALFAIGA 319
Query: 548 SKLKELPRRATFI 560
KE R +
Sbjct: 320 RNPKEARGRVERV 332
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 43.8 bits (103), Expect = 8e-05
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 133 EYICLDV---ANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
I +D F+R+++E YP + ++ ++ T + +G D +
Sbjct: 103 AVIAMDCTKRDRHDGLDIASFIRQVKEKYP-NQLLMADISTFDEGLVAHQAGIDFV---- 157
Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQ------AGNVVTGEMVEELILSGADVIKVG 241
G T + + + + G + + E +++ G I VG
Sbjct: 158 GTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGV 443
+ ++ + A AG DFV G +G+ + + + + +
Sbjct: 135 LLMADISTFDEGLVAHQAGIDFV--GTTLSGYTPYSRQEAGPDVALIEALCKAGIAV--I 190
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLGG 469
+G SP + K G +++GG
Sbjct: 191 AEGKIHSPEEAKKINDLGVAGIVVGG 216
Score = 39.9 bits (93), Expect = 0.001
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 322 TFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG---LFTTIHKY---------YTLEE 369
R + Y ++A + TF+ + G + TT+ Y +
Sbjct: 123 FIRQVKEKYPNQLLMA----DISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVAL 178
Query: 370 WKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGG 410
+A VI A+G SP + K G +++GG
Sbjct: 179 IEALCKAGIAVI---AEGKIHSPEEAKKINDLGVAGIVVGG 216
Score = 32.2 bits (73), Expect = 0.43
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKT-SDFF--LIQFYSCIPQAGNVVTGEM 226
T V++L VI + R + F + + Y ++ T +
Sbjct: 90 TMTEVDQLAALNIAVIAMD----CTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDE 145
Query: 227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADA 270
+G D + G T P + + A
Sbjct: 146 GLVAHQAGIDFV----GTTLSGYTPYSRQEAGPDVALIEALCKA 185
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 42.0 bits (98), Expect = 2e-04
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 387 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV-D 445
C+S D GAD + G +G+ E PLV ++ V+ +
Sbjct: 134 ADCSSVDDGLACQRLGADII--GTTMSGY----TTPDTPEEPDLPLVKALHDAGCRVIAE 187
Query: 446 GGCTSPGDVAKAMGAGADFVMLGGMFAG 473
G SP A+A+ GA V +G
Sbjct: 188 GRYNSPALAAEAIRYGAWAVTVGSAITR 215
Score = 38.9 bits (90), Expect = 0.003
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAG 414
+A+G SP A+A+ GA V +G
Sbjct: 185 IAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215
Score = 36.6 bits (84), Expect = 0.014
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 132 IEYICLDVANGYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
I +D + RI H++ + + + GAD+I +
Sbjct: 102 AAIIAVDGTARQRPVAVEALLARIHH---HHLLTMADCSSVDDGLACQRLGADIIGTTMS 158
Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQA-GNVVTGEMVEELILSGADVIKVG 241
+ T + + C A G + + E I GA + VG
Sbjct: 159 GYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 40.9 bits (96), Expect = 8e-04
Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 20/144 (13%)
Query: 146 TFVDFVRRIREMYPKH-----------VIIAGNVVT--GEMVEELILSGADVIKV----G 188
T D +RR K+ + T ++ L+LS + + V G
Sbjct: 108 TVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG 167
Query: 189 IGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC 248
G V T L + +++ + E L+ ++ +
Sbjct: 168 NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIM 227
Query: 249 TTRLKTGVGYPQFSAVLECADAAH 272
T + V E A
Sbjct: 228 TRDVIVA---TPHMTVHEVALKMA 248
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 40.9 bits (96), Expect = 0.001
Identities = 35/130 (26%), Positives = 44/130 (33%), Gaps = 26/130 (20%)
Query: 369 EWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYM 428
E V P ++K V G S K AGA V +GG G G + IE +
Sbjct: 171 EQICSRVSVPVIVKEVGFG--MSKASAGKLYEAGAAAVDIGG--YG----GTNFSKIENL 222
Query: 429 -------FFPLVG--------DMNSYLGGV---VDGGCTSPGDVAKAMGAGADFVMLGGM 470
FF G ++ S GG DVAKA+ GA + G
Sbjct: 223 RRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGH 282
Query: 471 FAGHDQSGGE 480
F GE
Sbjct: 283 FLKALTDSGE 292
Score = 37.0 bits (86), Expect = 0.016
Identities = 24/122 (19%), Positives = 34/122 (27%), Gaps = 31/122 (25%)
Query: 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL------------FTTIHKYYTLEEWKAF-- 373
+ VP+I + + A L + G F+ I + F
Sbjct: 174 CSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNS 233
Query: 374 --------------AVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG 419
+I A GG DVAKA+ GA + G F
Sbjct: 234 WGISTAASLAEIRSEFPASTMI---ASGGLQDALDVAKAIALGASCTGMAGHFLKALTDS 290
Query: 420 GE 421
GE
Sbjct: 291 GE 292
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 39.1 bits (91), Expect = 0.004
Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 42/182 (23%)
Query: 332 GVPIIAANMDTVGTFEMAKHLAKHGLFT-----TIHKYYTLEEWKAFAVQNPDVIKHVAD 386
G+ + + +A HL ++ Y LE+ + + + I
Sbjct: 136 GLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKES 195
Query: 387 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN---IEYMFFPLVGDMNSYLGG- 442
G S G G GG TN IE + G+ +
Sbjct: 196 GNGISMETAKLLYSYGIKNFDTSG-------QGG--TNWIAIEMIRDIRRGNWKAESAKN 246
Query: 443 ------------------------VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG 478
V GG S D AKA+ GAD + G
Sbjct: 247 FLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEG 306
Query: 479 GE 480
E
Sbjct: 307 KE 308
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 38.1 bits (88), Expect = 0.006
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAG 414
+A+G +P A A+ GA V +G
Sbjct: 185 IAEGRYNTPALAANAIEHGAWAVTVGSAITR 215
Score = 37.3 bits (86), Expect = 0.009
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 11/115 (9%)
Query: 132 IEYICLDV-ANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
+ I D + RIR ++ + T G + I +
Sbjct: 102 ADIIAFDASFRSRPVDIDSLLTRIRL---HGLLAMADCSTVNEGISCHQKGIEFIGTTLS 158
Query: 191 PGSVCTTRLKNKTSDFFLIQFYS--CIPQ--AGNVVTGEMVEELILSGADVIKVG 241
+ T ++ D ++ S G T + I GA + VG
Sbjct: 159 GYTGPITPVEP---DLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVG 210
Score = 36.2 bits (83), Expect = 0.022
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAG 473
+ +G +P A A+ GA V +G
Sbjct: 185 IAEGRYNTPALAANAIEHGAWAVTVGSAITR 215
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 36.3 bits (84), Expect = 0.029
Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 27/130 (20%)
Query: 369 EWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG-ELTNIEY 427
A +Q P ++K V G + A+ G V + G GG IE
Sbjct: 199 SDYAKKLQLPFILKEVGFG--MDVKTIQTAIDLGVKTVDISG-------RGGTSFAYIEN 249
Query: 428 M------FFPLVG--------DMNSYLGGV---VDGGCTSPGDVAKAMGAGADFVMLGGM 470
+ G + + V GG P D+ KA+ GA V L
Sbjct: 250 RRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRT 309
Query: 471 FAGHDQSGGE 480
+
Sbjct: 310 MLELVEQHSV 319
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 34.5 bits (80), Expect = 0.10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
+D G D+ KA+ GA+ V+LG
Sbjct: 283 IDSGFRRGSDIVKALALGAEAVLLG 307
Score = 33.7 bits (78), Expect = 0.21
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 386 DGGCTSPGDVAKAMGAGADFVMLG 409
D G D+ KA+ GA+ V+LG
Sbjct: 284 DSGFRRGSDIVKALALGAEAVLLG 307
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center
for infect disease, iodide SOAK, LLP, CAT-scratch DI
isomerase; HET: LLP; 2.04A {Bartonella henselae}
Length = 376
Score = 34.4 bits (80), Expect = 0.10
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 71 EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIK-HVAVSS-----GISAKDLAGLKE 124
+ + +A+ G+ ++ + T+E+W+ + + V + G+ K+L L +
Sbjct: 104 KAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMSRLGLDKKELQKLIK 163
Query: 125 ILAALPEIE 133
+ E
Sbjct: 164 NPTIFEKAE 172
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 34.1 bits (79), Expect = 0.14
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
+DGG DV KA+ GA V +G
Sbjct: 312 LDGGVRKGTDVLKALALGAKAVFVG 336
Score = 33.3 bits (77), Expect = 0.26
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 378 PDVIKHVA-------DGGCTSPGDVAKAMGAGADFVMLG 409
P++++ V DGG DV KA+ GA V +G
Sbjct: 298 PEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 33.9 bits (78), Expect = 0.15
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 372 AFAVQNPDVIKHVADGG------CTSPGDVAKAMGAGADFVMLGGMFA-GHDQSGGELTN 424
F V + +VI + G T+P + AGAD V+ G+ A GH G +
Sbjct: 129 HFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGH---QGTHRD 185
Query: 425 IEYMFFPLVGDMNSYLGGVVD---------GGCTSPGDVAKAMGAGADFVMLGGMF 471
+G + S L V + GG G +A + AGAD LG F
Sbjct: 186 SSEDDGAGIGLL-SLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAF 240
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 34.1 bits (79), Expect = 0.16
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
+DGG DV KA+ GA V +G
Sbjct: 285 LDGGVRRGTDVFKALALGAAGVFIG 309
Score = 32.9 bits (76), Expect = 0.31
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 378 PDVIKHVA-------DGGCTSPGDVAKAMGAGADFVMLG 409
+V+K DGG DV KA+ GA V +G
Sbjct: 271 EEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 33.3 bits (75), Expect = 0.21
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 136 CLDVANGYTQTFVDFVRRIREMYPKHV--IIAGNVVTGEMVEELILSGADVIKVG 188
+ + + + VR R+ ++GNV +G V E + SGAD +
Sbjct: 202 MVYLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256
Score = 30.6 bits (68), Expect = 1.5
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 327 GKTYQGVPIIAANMDTVGTFEMA-KHLAKHGLFTTIHKYYTLEEW-KAFAVQNPDVIKHV 384
G VP+ A+ + + + + H ++ + E + F
Sbjct: 172 GDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGPDQVLF 231
Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGGMF 412
G S V + + +GAD+V G
Sbjct: 232 VSGNVRSGRQVTEYLDSGADYVGFAGAL 259
Score = 30.6 bits (68), Expect = 1.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMF 471
V G S V + + +GAD+V G
Sbjct: 231 FVSGNVRSGRQVTEYLDSGADYVGFAGAL 259
Score = 28.3 bits (62), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 218 AGNVVTGEMVEELILSGADVIKVG 241
+GNV +G V E + SGAD +
Sbjct: 233 SGNVRSGRQVTEYLDSGADYVGFA 256
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.27
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 168 VVTG--------EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFF 207
++TG E+++ L+ GA V+ V T+R + +D++
Sbjct: 480 LITGAGKGSIGAEVLQGLLQGGAKVV--------VTTSRFSKQVTDYY 519
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 32.9 bits (76), Expect = 0.28
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
D G VAKA+ +GAD V LG
Sbjct: 289 FDSGVRRGEHVAKALASGADVVALG 313
Score = 32.1 bits (74), Expect = 0.49
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 378 PDVIKHVA-------DGGCTSPGDVAKAMGAGADFVMLG 409
P + + V D G VAKA+ +GAD V LG
Sbjct: 275 PAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 32.9 bits (76), Expect = 0.30
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
+DGG + DV KA+ GA + LG
Sbjct: 277 MDGGVRTGTDVLKALALGARCIFLG 301
Score = 32.1 bits (74), Expect = 0.62
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 378 PDVIKHVA-------DGGCTSPGDVAKAMGAGADFVMLG 409
+V+ V DGG + DV KA+ GA + LG
Sbjct: 263 REVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 33.2 bits (76), Expect = 0.32
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 214 CIPQAGNVVTG-----EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSA--VLE 266
P V + + +G + IK+ G V + G PQ S +
Sbjct: 173 GAPLIALTSGTPEEARTAVAQNLKAGVNAIKIAAT-GGVTDAQEIGEAGSPQMSVEQMRA 231
Query: 267 CADAAHGLG 275
D AH G
Sbjct: 232 ICDEAHQYG 240
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 33.0 bits (76), Expect = 0.32
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 32/127 (25%)
Query: 346 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVI-----KHVADG---GCTSPGDVAK 397
+ K +A T + T ++ + + +V DG G S G+ +
Sbjct: 31 LSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGNPRE 90
Query: 398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG-----VVDGGCTSPG 452
+ + ++ F ++ + + G V D
Sbjct: 91 PIFLF-------------------IKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGA 131
Query: 453 DVAKAMG 459
D+A+ M
Sbjct: 132 DLAEEMH 138
Score = 28.7 bits (65), Expect = 7.2
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 70 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV---IKHVAVSSG 113
+ K +A T + T ++ + IK+ V G
Sbjct: 31 LSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDG 77
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 32.7 bits (75), Expect = 0.37
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 444 VDGGCTSPGDVAKAMGAGADFVMLG 468
VDGG DV KA+ GA V LG
Sbjct: 408 VDGGVRRGTDVLKALCLGAKGVGLG 432
Score = 31.5 bits (72), Expect = 0.89
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 374 AVQNPDVIKHV---ADGGCTSPGDVAKAMGAGADFVMLG 409
++ ++ + DGG DV KA+ GA V LG
Sbjct: 394 ILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 31.7 bits (73), Expect = 0.66
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG-ADVIKVG 188
V + I++ G + T E+ EE++ + AD++ +G
Sbjct: 266 VKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALG 307
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 31.0 bits (70), Expect = 1.1
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 108 VAVSSGISAKDLAGLKEILAA--LPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVII- 164
+A+ GI+ + + +E I L+ + I + Y +I
Sbjct: 10 IAILRGITPDEALAHVGAVIDAGFDAVE-IPLNSPQWE-----QSIPAIVDAYGDKALIG 63
Query: 165 AGNVVTGEMVEELILSGADVI 185
AG V+ E V+ L G +I
Sbjct: 64 AGTVLKPEQVDALARMGCQLI 84
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 30.7 bits (70), Expect = 1.7
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 30/85 (35%)
Query: 338 ANMDTVGTF--------EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG- 388
+M + F MA +L K G Y L F + + + G
Sbjct: 1 GHMKQIA-FIGLGHMGAPMATNLLKAG--------YLL---NVFDL-VQSAVDGLVAAGA 47
Query: 389 --CTSPGDVAKAMGAGADFV--MLG 409
S D + GAD V ML
Sbjct: 48 SAARSARDAVQ----GADVVISMLP 68
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 30.2 bits (69), Expect = 2.3
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
M+K+L K G + V +A G ++ +A+ D
Sbjct: 20 MSKNLLKAGYSLVV---SDRNPEAIADV--------IAAGAETASTAKAIAE----QCDV 64
Query: 406 V--MLG 409
+ ML
Sbjct: 65 IITMLP 70
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 30.5 bits (70), Expect = 2.3
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 114 ISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVD 149
+DLA ++ LPE+ V + Q +
Sbjct: 360 ARPRDLARMRHAFQQLPELRAQLETVDSAPVQALRE 395
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure
for C-terminal domain, internal/external aldimine forms,
isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas
aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Length = 357
Score = 30.1 bits (69), Expect = 2.4
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 76 LAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSS-----GISAKDLAGLKEILAALP 130
+ H + +H + LE + ++ P + + + S G +D E L A
Sbjct: 90 IVAHDFWCVVHCAWQLEAIERASLARPLNV-WLKMDSGMHRVGFFPEDFRAAHERLRASG 148
Query: 131 EIEYICL 137
++ I +
Sbjct: 149 KVAKIVM 155
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 29.9 bits (68), Expect = 2.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
+VD G + D A AM G + V++
Sbjct: 191 LVDAGVGTASDAAIAMELGCEAVLM 215
Score = 29.1 bits (66), Expect = 4.0
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 34/99 (34%)
Query: 341 DTVGTFEMAKHLAKHGLFTTIHKYYT---------LEEWKAFAV-------------QNP 378
+ V T + A+ L K G F + YT L E AV NP
Sbjct: 120 NVVETLKAAEQLVKDG-FDVM--VYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNP 176
Query: 379 DVIKH---------VADGGCTSPGDVAKAMGAGADFVML 408
++ + D G + D A AM G + V++
Sbjct: 177 YNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 215
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 29.5 bits (67), Expect = 2.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
+VD G SP D A AM GAD V+L
Sbjct: 182 IVDAGIGSPKDAAYAMELGADGVLL 206
Score = 28.7 bits (65), Expect = 4.9
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 34/99 (34%)
Query: 341 DTVGTFEMAKHLAKHGLFTTIHKYYT---------LEEWKAFAV-------------QNP 378
D V T + ++ L + G F + YT LEE A+ NP
Sbjct: 111 DPVETLKASEQLLEEG-FIVL--PYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNP 167
Query: 379 DVIKH---------VADGGCTSPGDVAKAMGAGADFVML 408
+ + D G SP D A AM GAD V+L
Sbjct: 168 LNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 206
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 29.9 bits (68), Expect = 2.9
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
MA+ L + G + + +A ++ A G A+ AD
Sbjct: 46 MARRLCEAGYALQV---WNRTPARAASL--------AALGATIHEQARAAAR----DADI 90
Query: 406 V--MLG 409
V ML
Sbjct: 91 VVSMLE 96
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 29.5 bits (67), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVML 467
VVD G P A+ M G D V++
Sbjct: 182 VVDAGLGLPSHAAEVMELGLDAVLV 206
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 29.5 bits (67), Expect = 3.5
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 19/65 (29%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAD-GGCTSPGDVAKAMGAGADFV 406
MA HLA+ + ++H + G P + A A +
Sbjct: 16 MAGHLARRFPTLV---WNRT---------FEKALRHQEEFGSEAVPLERV----AEARVI 59
Query: 407 --MLG 409
L
Sbjct: 60 FTCLP 64
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron
storage, iron binding, iron mobilizati ferritin, iron
homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Length = 73
Score = 27.0 bits (60), Expect = 4.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 381 IKHVADGGCTSPGDVAKAMGAGAD 404
I+ GC S +V +A G G
Sbjct: 14 IRDAIYEGCCSYREVREATGVGTQ 37
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 28.8 bits (64), Expect = 4.4
Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 15/149 (10%)
Query: 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL-FTTIHKYYTLEEWKAF--AVQNPDVIKHV 384
+ ++ T G +++ + G + T+ + A + +
Sbjct: 55 HNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQI 114
Query: 385 ADGGCTSPGDVAKAMGAGADFVML----GGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL 440
G + D + G + AG + +L + + + L
Sbjct: 115 EIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMR-----QLSALGIEL 169
Query: 441 GGVVDGGCTSPGDVAKAMGAGADFVMLGG 469
+ GG P D+ G + G
Sbjct: 170 S--ITGG-IVPEDIYLFEGIKTKTFIAGR 195
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 29.1 bits (66), Expect = 4.6
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
+ +L K G T+ + K + +G +P +V D
Sbjct: 45 IVSNLLKMGHTVTV---WNRTAEKCDLF--------IQEGARLGRTPAEVVS----TCDI 89
Query: 406 V--MLG 409
+
Sbjct: 90 TFACVS 95
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 29.1 bits (66), Expect = 4.6
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 21/67 (31%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG---CTSPGDVAKAMGAGAD 404
MAK+L KHG Y L + V PD K D G +SP DVA+ AD
Sbjct: 15 MAKNLMKHG--------YPL---IIYDV-FPDACKEFQDAGEQVVSSPADVAE----KAD 58
Query: 405 FV--MLG 409
+ ML
Sbjct: 59 RIITMLP 65
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 29.4 bits (67), Expect = 5.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 114 ISAKDLAGLKEILAALPEIEYICLDVAN 141
S KDL L+ L LPE+ + +
Sbjct: 344 ASPKDLGALRRSLQILPELRALLGEEVG 371
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 29.2 bits (66), Expect = 5.1
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 216 PQAGNVVTG-----EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSA--VLECA 268
VV G V E I GA IK+ G V + + Q+S +
Sbjct: 162 GAIARVVDGVEGVRLAVREEIQKGATQIKIMAS-GGVASPT--DPIANTQYSEDEIRAIV 218
Query: 269 DAAHGLG 275
D A
Sbjct: 219 DEAEAAN 225
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 29.2 bits (66), Expect = 5.4
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 213 SCIPQAGNVVTG-----EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSA--VL 265
S + + V L GA VIK+ G G Q + +
Sbjct: 154 SMDQKNPFNSDSPDEARKAVRTLKKYGAQVIKICATGGV---FSRGNEPGQQQLTYEEMK 210
Query: 266 ECADAAHGLG 275
D AH G
Sbjct: 211 AVVDEAHMAG 220
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 28.8 bits (65), Expect = 5.5
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 28/111 (25%)
Query: 373 FAVQNP-DVIKHVADGG------CTSPGDVAKAMGAGADFVMLGGM-FAGHDQSGGELTN 424
NP ++ + G S + GAD V+ GM GH G+LT
Sbjct: 94 TGAGNPSKYMERFHEAGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGH---IGKLTT 150
Query: 425 IEYMFFPLVGDMNSYL-------GGVVDGGCTSPGDVAKAMGAGADFVMLG 468
LV + + + GG+ DG A GA+ V +G
Sbjct: 151 -----MTLVRQVATAISIPVIAAGGIADG-----EGAAAGFMLGAEAVQVG 191
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 29.2 bits (66), Expect = 5.5
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 114 ISAKDLAGLKEILAALPEIEYICLDVANGYTQTFV-DFVRRIREMYPKHVIIAGNVVTGE 172
+ +D L + + LP + + + + FV + ++ E
Sbjct: 399 ANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQ------E 452
Query: 173 MVEELI-----LSGADVIKVG 188
M+E + + ++K
Sbjct: 453 MIETTLDMDQVENHEFLVKPS 473
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 28.5 bits (63), Expect = 5.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 138 DVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG 181
+V + Y T +D+ R + + + I G T E +E+++ SG
Sbjct: 137 EVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 28.7 bits (65), Expect = 5.7
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
M+ +L K+G T+ + K + V G C SP +V K +
Sbjct: 36 MSMNLLKNGFKVTV---WNRTLSKCDEL--------VEHGASVCESPAEVIK----KCKY 80
Query: 406 V--MLG 409
ML
Sbjct: 81 TIAMLS 86
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 29.0 bits (64), Expect = 5.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 138 DVANGYTQTFVDFVRRIREMYPKHVIIAG 166
N Y Q FVD VR+ ++
Sbjct: 197 TNLNAYNQIFVDTVRQTGGNNNARWLLVP 225
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 28.7 bits (65), Expect = 5.9
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
MA +L + G T+ + K + VA G +SP +V A D
Sbjct: 16 MAANLVRAGFDVTV---WNRNPAKCAPL--------VALGARQASSPAEVC----AACDI 60
Query: 406 V--MLG 409
ML
Sbjct: 61 TIAMLA 66
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 28.7 bits (65), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 371 KAFAVQNPDVIKHVADGGCTSPGDVAKAMGA 401
K N D + ++ GG SP D AKA+
Sbjct: 82 KILKDNNSDFV--ISLGGG-SPHDCAKAIAL 109
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 28.3 bits (64), Expect = 7.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
MAK+L K G TI + KA + A G +P +V
Sbjct: 16 MAKNLVKAGCSVTI---WNRSPEKAEEL--------AALGAERAATPCEVV----ESCPV 60
Query: 406 V--MLG 409
ML
Sbjct: 61 TFAMLA 66
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.8 bits (65), Expect = 7.6
Identities = 5/43 (11%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG-ADVIKVG 188
F R+++ ++ + ++ ++++ G AD++ +
Sbjct: 268 FSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMA 310
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 28.3 bits (63), Expect = 7.7
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 116 AKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG 166
A+ + L E + + + + IR+ P ++I
Sbjct: 127 AQAFKDYPDKLFFEIFNEPAQNLTPTKWNELYPKVLGEIRKTNPSRIVIID 177
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 28.5 bits (63), Expect = 7.8
Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 449 TSPGDVAKAMGAGADFVML----------GGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
+ + + AD + + GG+ D S ++ + + G +
Sbjct: 244 WTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTY 303
Query: 499 TAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYV 545
+ G + + + + VQ ++ GL
Sbjct: 304 GGL--EGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVC 348
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 28.3 bits (64), Expect = 7.8
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 19/66 (28%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADF 405
MA +L K G T+ AF + +V VA G C + VA A +D
Sbjct: 19 MAINLLKEG--------VTV---YAFDLMEANVAAVVAQGAQACENNQKVA----AASDI 63
Query: 406 V--MLG 409
+ L
Sbjct: 64 IFTSLP 69
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 28.4 bits (64), Expect = 8.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 151 VRRIREMY---PKHVIIA-GNVVTGEMVEELILSGADVIKVG-----IGPG 192
+ I Y P +I G V TGE +L+GA +++VG GP
Sbjct: 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPS 315
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 28.3 bits (64), Expect = 8.2
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 20/67 (29%)
Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGG---CTSPGDVAKAMGAGAD 404
A+ + GL T + +A+G S + A D
Sbjct: 22 AARSCLRAGLSTW-----------GADLNPQACANLLAEGACGAAASAREFA----GVVD 66
Query: 405 FV--MLG 409
+ ++
Sbjct: 67 ALVILVV 73
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 28.4 bits (64), Expect = 8.2
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 389 CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL----GGVV 444
CT+ KA G D V + G ++ + + P + GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGL--VLLPAAANRLRVPIIASGGFA 182
Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFA 472
DG + A+ GAD + +G F
Sbjct: 183 DG-----RGLVAALALGADAINMGTRFL 205
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 28.4 bits (63), Expect = 8.4
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 136 CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTG 171
+V N Y T V+ +R I+ +
Sbjct: 166 NREVVNRYNLTAVNAIRATGGNNATRYIMVPTLAAS 201
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics,
unknown function, joint center for STRU genomics, JCSG;
HET: MSE; 1.80A {Bacteroides ovatus}
Length = 285
Score = 28.2 bits (62), Expect = 8.7
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 7/116 (6%)
Query: 422 LTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 481
L + + G A+A G + G +A + + L
Sbjct: 55 LNELTFTPATKDDKNVPATGPESSAPLPIHAFAAEANGKTVWLGVNGDYYADNPRRVMGL 114
Query: 482 IEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGG 537
KDG + ++ + H + + + E Q + LGG
Sbjct: 115 FYKDGVCI-------NSQYFEGHDEVLYQLKNGETYVGQADEALAHEANLLHALGG 163
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 28.3 bits (64), Expect = 9.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 371 KAFAVQNPDVIKHVADGGCTSPGDVAKAMG 400
F D + +A GG SP D KA+G
Sbjct: 82 GVFQNSGADYL--IAIGGG-SPQDTCKAIG 108
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 28.2 bits (64), Expect = 9.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 220 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG--VGYPQFSAVLECADA 270
+ G+ ++E GA VI VGI RL+ G VG F + A
Sbjct: 214 GFIPGDWIKE----GAIVIDVGI-------NRLENGKVVGDVVFEDAAKRASY 255
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.1 bits (63), Expect = 9.3
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 31/99 (31%)
Query: 144 TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKT 203
F R KH + + +++++ +DV+ G+
Sbjct: 209 VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVITGVP------------- 254
Query: 204 SDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGI 242
E ++E GA I
Sbjct: 255 -------------SENYKFPTEYIKE----GAVCINFAC 276
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 28.1 bits (63), Expect = 9.5
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 225 EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSA--VLECADAAHGLG 275
V E + GAD IK+ G V + VG +S + A G G
Sbjct: 179 RAVREELQMGADQIKIMAS-GGVASPT--DPVGVFGYSEDEIRAIVAEAQGRG 228
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL
biogenesis/degradat isomerase, peptidoglycan synthesis,
pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia
coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Length = 379
Score = 28.2 bits (64), Expect = 9.9
Identities = 6/71 (8%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 71 EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSS-----GISAKDLAGLKEI 125
++ T +H L + ++ P + + + + G+ +
Sbjct: 105 RDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTV-WMKLDTGMHRLGVRPEQAEAFYHR 163
Query: 126 LAALPEIEYIC 136
L +
Sbjct: 164 LTQCKNVRQPV 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,617,715
Number of extensions: 695110
Number of successful extensions: 3521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3444
Number of HSP's successfully gapped: 274
Length of query: 671
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 571
Effective length of database: 3,909,693
Effective search space: 2232434703
Effective search space used: 2232434703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)