BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3863
(285 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427785585|gb|JAA58244.1| Putative cdk5 activator-binding protein [Rhipicephalus pulchellus]
Length = 585
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 118/149 (79%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DEV+A KV+FE +GCQMNVNDTEV WS+LK +G+ + N EADV+L+MTCAIRE AE
Sbjct: 76 DEVQAKGKKVHFETYGCQMNVNDTEVAWSLLKDAGFVRTNSASEADVVLIMTCAIREGAE 135
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
GK+W R+ + +K++ PL+IG+LGCMAERLK+ L+EKE+A+D+VAGPDSY+DL
Sbjct: 136 GKIWSRINQLKHLKKLRHADWRGPLQIGILGCMAERLKEKLIEKEKAVDIVAGPDSYRDL 195
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITP 194
PRLLAL +S Q +NV LSLDETYAD+ P
Sbjct: 196 PRLLALAHSGQVGVNVQLSLDETYADVVP 224
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 55/65 (84%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLNE+S SAFVSIMRGC+NMC+YCIVPFTRGRERSRP+ SILDEVRALSD+ EV
Sbjct: 225 VRLNENSKSAFVSIMRGCNNMCSYCIVPFTRGRERSRPLASILDEVRALSDQGVKEVTLL 284
Query: 63 QMNVN 67
NVN
Sbjct: 285 GQNVN 289
>gi|346469091|gb|AEO34390.1| hypothetical protein [Amblyomma maculatum]
Length = 588
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 123/159 (77%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ ++V + KV+FE +GCQMNVNDTEV WS+LK +G+ K N EADV+L+MTCAIRE
Sbjct: 77 LAEDVLSKGKKVHFETYGCQMNVNDTEVAWSLLKHAGFEKTNSVSEADVVLIMTCAIREG 136
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AEGK+W R+R +++K++ + + PL+IG+LGCMAERLK+ L+EKE+A+D+VAGPDSY+
Sbjct: 137 AEGKIWQRIRQLKAVKRLRHESKNGPLQIGILGCMAERLKEKLVEKEKAVDIVAGPDSYR 196
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGR 202
DLPRLLA S Q +NV LSLDETYA++ P + D +
Sbjct: 197 DLPRLLASARSGQVGVNVQLSLDETYANVVPVRLKEDSK 235
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 54/65 (83%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL EDS SAFVSIMRGC+NMC+YCIVPFTRGRERSRP+ +ILDEVRALSD+ EV
Sbjct: 228 VRLKEDSKSAFVSIMRGCNNMCSYCIVPFTRGRERSRPLATILDEVRALSDQGVKEVTLL 287
Query: 63 QMNVN 67
NVN
Sbjct: 288 GQNVN 292
>gi|157132304|ref|XP_001655989.1| radical sam proteins [Aedes aegypti]
gi|108881684|gb|EAT45909.1| AAEL002837-PA [Aedes aegypti]
Length = 573
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 6/155 (3%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +S+L + R KV+FE++GCQMN NDTE+VWSILKS + + + ++ADV+L+MTCA
Sbjct: 75 PRESLLGQKR----KVFFEIYGCQMNTNDTEIVWSILKSHDFQRTGNIKDADVVLLMTCA 130
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IR+ AE +W+RL+ R MK K+ PL+IGVLGCMAERLKK L+EKEQA+D+VAGP
Sbjct: 131 IRDGAESTIWNRLKHIRLMK--GKRDEAKPLQIGVLGCMAERLKKQLVEKEQAVDVVAGP 188
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
DSYKDLPRLLA+ S Q AINV+LSLDETYAD+ P
Sbjct: 189 DSYKDLPRLLAVGQSGQKAINVMLSLDETYADVMP 223
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 14/116 (12%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+L+ S +A+VSIMRGCDNMC+YCIVPFTRGRERSRP+ SI E L DK E+
Sbjct: 222 MPVKLDRKSRTAYVSIMRGCDNMCSYCIVPFTRGRERSRPISSIRKEALNLQDKGIKEIT 281
Query: 61 GCQMNVN----------DTEVVWSIL----KSSGYSKVNHPREADVILVMTCAIRE 102
NVN DTE SIL K+ +K+ R A++++ + + E
Sbjct: 282 LLGQNVNSYRDTSECSEDTEKQASILAPGFKTVYKTKIGGLRFAELLMDLAVTVPE 337
>gi|118792628|ref|XP_320425.3| AGAP012104-PA [Anopheles gambiae str. PEST]
gi|116116988|gb|EAA00300.4| AGAP012104-PA [Anopheles gambiae str. PEST]
Length = 538
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 122/160 (76%), Gaps = 1/160 (0%)
Query: 36 ERSRPMQSILDE-VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
+R +P+ I E +R KV+ EV+GCQMN NDTE+VWSILK+ Y + + +EAD++L
Sbjct: 28 DRGKPIPYIAPETLRGQKRKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVL 87
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
+MTCAIRE AE VW+RL+ R +K+ + + PL+IGVLGCMAERLKK L+EKE ++D
Sbjct: 88 MMTCAIREGAEDTVWNRLKHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVD 147
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
+VAGPD+YKDLPRLLA+ Q AINVLLSLDETYAD+ P
Sbjct: 148 VVAGPDAYKDLPRLLAIGQRGQKAINVLLSLDETYADVVP 187
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 6/91 (6%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
V+L+ S +AFVSIMRGCDNMC+YCIVPFTRG+ERSRP++SI +EV L ++ E+
Sbjct: 188 VKLDRKSKTAFVSIMRGCDNMCSYCIVPFTRGKERSRPIKSIREEVLQLENEGIREITLL 247
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
NVN S +S S + P+EA ++
Sbjct: 248 GQNVN------SYRDTSDESLEDAPKEATLL 272
>gi|340722639|ref|XP_003399711.1| PREDICTED: CDK5RAP1-like protein-like [Bombus terrestris]
Length = 602
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 122/157 (77%), Gaps = 4/157 (2%)
Query: 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
S P + + KVYFEV+GCQMNVND EV+WSILKS GY KVN+ EA+VIL++T
Sbjct: 99 SVPNIPYIQNIDGSDQKVYFEVYGCQMNVNDAEVIWSILKSHGYRKVNNVIEANVILLIT 158
Query: 98 CAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
C+IR+NAE KVW++L + KK+++FP+KIG+LGCMAERLK +LEK + +D++A
Sbjct: 159 CSIRDNAEQKVWNKL---TDLNSTRKKNKSFPVKIGLLGCMAERLKDKILEKGKLVDVIA 215
Query: 158 GPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
GPDSYKDLPRLL++ N+TAINV+LS DETYAD+TP
Sbjct: 216 GPDSYKDLPRLLSVP-DNETAINVVLSFDETYADVTP 251
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ S SA+V+IMRGCDNMCTYCIVPFTRGRERSRP+ SI+ E+++LSD+ EV
Sbjct: 252 VRLDPSSTSAYVTIMRGCDNMCTYCIVPFTRGRERSRPIDSIVKEIQSLSDEGVKEVILL 311
Query: 63 QMNVN 67
NVN
Sbjct: 312 GQNVN 316
>gi|390367810|ref|XP_801957.3| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
isoform 4 [Strongylocentrotus purpuratus]
Length = 656
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S +VYFE +GCQMNV+DTE+ W+IL+ SG+ KV ADVIL +TCAIRENAE K+W+R
Sbjct: 146 SRRVYFETYGCQMNVSDTEIAWAILEKSGFQKVEDISHADVILAVTCAIRENAEQKIWNR 205
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L++++S+K +K PLKIG+LGCMAERLKK LLE+ + +D+VAGPD+Y+DLPRLL +
Sbjct: 206 LKYFQSLKNNRRKGEV-PLKIGLLGCMAERLKKKLLEQSKTVDIVAGPDAYRDLPRLLNV 264
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
S QTAINV+LS+DETYAD+ P + D + +
Sbjct: 265 AGSGQTAINVMLSMDETYADVVPVRLDKDSKSAF 298
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 55/65 (84%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL++DS SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SI+DE+RALSD+ EV
Sbjct: 288 VRLDKDSKSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIDSIVDEIRALSDQGVKEVTVL 347
Query: 63 QMNVN 67
NVN
Sbjct: 348 GQNVN 352
>gi|241560240|ref|XP_002400838.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
scapularis]
gi|215499787|gb|EEC09281.1| CDK5 regulatory subunit-associated protein, putative [Ixodes
scapularis]
Length = 547
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 125/177 (70%), Gaps = 2/177 (1%)
Query: 31 FTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREA 90
T G E P D VR VYFE +GCQMNVNDTEV WS+LKS+G++K A
Sbjct: 24 LTEGAEAPHPYVREPD-VRVRDRSVYFETYGCQMNVNDTEVAWSVLKSAGFTKTEDVNVA 82
Query: 91 DVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKE 150
DV+L+MTCAIRE AE K+W R+ +++K+ ++ P++IG+LGCMAERLK+ L+E+E
Sbjct: 83 DVVLIMTCAIREGAESKIWSRINQLKALKKARRRSSRGPMQIGILGCMAERLKEKLVERE 142
Query: 151 QALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ +D+VAGPDSY+DLPRLL + S Q +NVLLSLDETYAD+ P + T+ +S YV
Sbjct: 143 KEVDIVAGPDSYRDLPRLLRVATSGQVGVNVLLSLDETYADVVPVRL-TENAKSAYV 198
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL E++ SA+VSIMRGC+NMCTYCIVPFTRGRERSRP+ SILDEVRALS++ EV
Sbjct: 187 VRLTENAKSAYVSIMRGCNNMCTYCIVPFTRGRERSRPVTSILDEVRALSEQGVKEVILL 246
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
NVN + + + + P DV+L
Sbjct: 247 GQNVNS----YRDTSAESQALIARPAPGDVLL 274
>gi|380022835|ref|XP_003695241.1| PREDICTED: CDK5RAP1-like protein-like [Apis florea]
Length = 599
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 121/148 (81%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYFEV+GCQMNVNDTEV+WSILKS GY KV + EA++IL++TC+IR+NAE KVW++L
Sbjct: 112 KVYFEVYGCQMNVNDTEVIWSILKSHGYKKVENITEANIILLITCSIRDNAEQKVWNKL- 170
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ I KK + P+KIG+LGCMAERLK +LE+ + +D++AGPDSYKDLPRLL++
Sbjct: 171 --NNLNYIRKKKKQHPIKIGLLGCMAERLKDKILERGKLVDVIAGPDSYKDLPRLLSIP- 227
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
N+TAINVLLS DETYADITP ++++
Sbjct: 228 DNETAINVLLSFDETYADITPVRLNSNS 255
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN +S SAFV+IMRGCDNMCTYCIVPFTRGRERSRP++SI+ EV++LSD E+
Sbjct: 249 VRLNSNSTSAFVTIMRGCDNMCTYCIVPFTRGRERSRPIESIVKEVQSLSDDGVKEIVLL 308
Query: 63 QMNVN 67
NVN
Sbjct: 309 GQNVN 313
>gi|350424183|ref|XP_003493714.1| PREDICTED: CDK5RAP1-like protein-like [Bombus impatiens]
Length = 602
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 122/157 (77%), Gaps = 4/157 (2%)
Query: 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
S P + + KVYF+V+GCQMNVNDTEV+WSILKS GY KVN EA++IL++T
Sbjct: 99 SVPNIPYIQNIDGSDQKVYFDVYGCQMNVNDTEVIWSILKSHGYRKVNDIIEANIILLVT 158
Query: 98 CAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
C+IR+NAE KVW++L + + KK++ FP+KIG+LGCMAERLK +LEK + ++++A
Sbjct: 159 CSIRDNAEQKVWNKL---TDLNNVRKKNKRFPVKIGLLGCMAERLKDKILEKGKLVEVIA 215
Query: 158 GPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
GPDSYKDLPRLL++ N+TAINV+LS DETYAD+TP
Sbjct: 216 GPDSYKDLPRLLSVP-DNETAINVVLSFDETYADVTP 251
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ S SA+V+IMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV++LSD+ EV
Sbjct: 252 VRLDPSSTSAYVTIMRGCDNMCTYCIVPFTRGRERSRPIDSIVKEVQSLSDEGVKEVILL 311
Query: 63 QMNVN 67
NVN
Sbjct: 312 GQNVN 316
>gi|194740916|ref|XP_001952936.1| GF17521 [Drosophila ananassae]
gi|190625995|gb|EDV41519.1| GF17521 [Drosophila ananassae]
Length = 577
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 122/149 (81%), Gaps = 4/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEVFGCQMN NDTEVVWS+L+ +GY++ P +AD+I+++TCA+R+ AE ++W+RL+
Sbjct: 95 KVHFEVFGCQMNTNDTEVVWSVLRENGYARCQDPEDADIIMLVTCAVRDGAEQRIWNRLK 154
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ VLGCMAERLK+ LLEKEQ +D++AGPDSYKDLPRLLA++
Sbjct: 155 HLRAMKS-KRSPRRHPLQLSVLGCMAERLKEKLLEKEQCVDVIAGPDSYKDLPRLLAISR 213
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P ++++
Sbjct: 214 HYGN-SAINVLLSLDETYADVMPVRLNSE 241
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +A+VSIMRGCDNMCTYCIVPFTRGRERSRP++SIL EVRAL ++ EV
Sbjct: 234 MPVRLNSESPTAYVSIMRGCDNMCTYCIVPFTRGRERSRPLESILTEVRALQEQGVKEVT 293
Query: 61 GCQMNVN-------DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
NVN E + + G+ V P+ + + +R AE R+R
Sbjct: 294 LLGQNVNSYRDGGTSQEKDPNSVPVPGFKTVYKPKSGGI--TFSRLLRSVAEAVPEMRIR 351
Query: 114 F 114
F
Sbjct: 352 F 352
>gi|260789490|ref|XP_002589779.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
gi|229274962|gb|EEN45790.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae]
Length = 514
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 118/150 (78%), Gaps = 11/150 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYFE +GCQMNV+DTE+ WS+LK SGY + +ADVIL +TCAIRENAE K+W RL+
Sbjct: 7 KVYFETYGCQMNVSDTEIAWSVLKDSGYQRTESVNDADVILAVTCAIRENAEQKIWTRLQ 66
Query: 114 FYRSMKQIHKKHRTFPLKIGVLG---------CMAERLKKSLLEKEQALDLVAGPDSYKD 164
+R+MK +++++ PLK+GVLG CMAERLKK LLE+E+++DL+AGPD+Y+D
Sbjct: 67 EFRAMKT--RRNKSRPLKVGVLGKENCVDILRCMAERLKKDLLEREKSVDLIAGPDAYRD 124
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITP 194
LPRLL++T S Q A NV+LSLDETYAD+ P
Sbjct: 125 LPRLLSVTESGQQAANVVLSLDETYADVMP 154
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VR+N + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP++SIL+EVRALS + EV
Sbjct: 153 MPVRMNAGAPTAFVSIMRGCDNMCSYCIVPFTRGRERSRPIKSILEEVRALSGQGVKEVT 212
Query: 61 GCQMNVN 67
NVN
Sbjct: 213 LLGQNVN 219
>gi|444729131|gb|ELW69558.1| CDK5 regulatory subunit-associated protein 1 [Tupaia chinensis]
Length = 453
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 133/202 (65%), Gaps = 18/202 (8%)
Query: 12 AFVSIMRGCDNMCTYCIV--PFTRGRERSRPMQSI-------------LDEVRALSDKVY 56
A VS RG +C C V F + + S P + + +DE+R KVY
Sbjct: 15 ALVSPTRGA--VCCECAVMDGFLQAKSASAPQEKVSSPEEEDPPPYLTVDELRGRQRKVY 72
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE +W+RL +
Sbjct: 73 LETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLK 132
Query: 117 SMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176
+K + R PL+IG+LGCMAERLK+ +L +E+ +DL+AGPD+Y+DLPRLLA+ S Q
Sbjct: 133 VLKTKRLRSRV-PLRIGILGCMAERLKEEILNREKVVDLLAGPDAYRDLPRLLAVAESGQ 191
Query: 177 TAINVLLSLDETYADITPKAVS 198
A NVLLSLDETYAD+ P S
Sbjct: 192 QAANVLLSLDETYADVMPVQTS 213
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL+EVR LS++V
Sbjct: 208 MPVQTSPSTTSAFVSIMRGCDNMCTYCIVPFTRGRERSRPVASILEEVRKLSEQV 262
>gi|291388708|ref|XP_002710877.1| PREDICTED: CDK5 regulatory subunit associated protein 1
[Oryctolagus cuniculus]
Length = 588
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 122/162 (75%), Gaps = 2/162 (1%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+R KVY E +GCQMNVNDTE+ WSIL+ SGY + + +EADVIL++TC+IRE AE
Sbjct: 94 DELRGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSDLQEADVILLVTCSIREKAE 153
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RLR +++K + R PL+IG+LGCMAERLK+ +L +E+ +DL+AGPD+Y+DL
Sbjct: 154 QTIWNRLRQLKALKTKRLRSRG-PLRIGILGCMAERLKEEILNREKMVDLLAGPDAYRDL 212
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
PRLLA+T S Q A NVLLSLDETYAD+ P S G S +V
Sbjct: 213 PRLLAVTESGQQAANVLLSLDETYADVMPVQASP-GATSAFV 253
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 240 MPVQASPGATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRQLSEQGLKEVT 299
Query: 61 GCQMNVN 67
NVN
Sbjct: 300 LLGQNVN 306
>gi|340371091|ref|XP_003384079.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Amphimedon queenslandica]
Length = 577
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYFE +GCQMN NDTE+ WSIL ++GY + +ADVIL +TCAIRENAE KVW+RL
Sbjct: 86 KVYFETYGCQMNANDTEIAWSILSNAGYRRAKEITDADVILAVTCAIRENAENKVWNRLD 145
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +KQ + PLK+G+LGCMAERLK+ LL+ ++ +DL+AGPD+Y+DLPRLLA+T
Sbjct: 146 YFSHLKQ-KRSANLPPLKVGLLGCMAERLKEKLLDTDKQVDLIAGPDAYRDLPRLLAVTE 204
Query: 174 SNQTAINVLLSLDETYADITP 194
S + A+NV LSLDETYAD++P
Sbjct: 205 SGEAAVNVALSLDETYADVSP 225
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLNE S +AFVSIMRGCDNMC++CIVPFTRGRERSRPM SI+ EV++LS++ +V
Sbjct: 226 VRLNESSPTAFVSIMRGCDNMCSFCIVPFTRGRERSRPMSSIISEVKSLSEQGIKQVTLL 285
Query: 63 QMNVN 67
NVN
Sbjct: 286 GQNVN 290
>gi|195143761|ref|XP_002012866.1| GL23830 [Drosophila persimilis]
gi|194101809|gb|EDW23852.1| GL23830 [Drosophila persimilis]
Length = 589
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%), Gaps = 5/169 (2%)
Query: 34 GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
G E S P + +D + KV+FEV+GCQMN NDTEVVWSILK GY + +AD++
Sbjct: 80 GVETSVPYLNAID-FQGHGRKVHFEVYGCQMNTNDTEVVWSILKQHGYERCQEVEDADLV 138
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
+++TCA+RE AE K+W+RLR R+MKQ R PL++ +LGCMAERLK+ LL++EQ +
Sbjct: 139 MLVTCAVREGAEQKIWNRLRHLRAMKQKRGAKRQ-PLQLTLLGCMAERLKERLLDQEQCV 197
Query: 154 DLVAGPDSYKDLPRLLALT--YSNQTAINVLLSLDETYADITPKAVSTD 200
D++AGPDSYKDLPRLLA++ Y N +AINVLLSLDETYAD+ P +++D
Sbjct: 198 DVIAGPDSYKDLPRLLAVSRHYGN-SAINVLLSLDETYADVMPVRLNSD 245
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN DS +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI++EV+AL ++ EV
Sbjct: 238 MPVRLNSDSPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVNEVQALQEQGVKEVT 297
Query: 61 GCQMNVN 67
NVN
Sbjct: 298 LLGQNVN 304
>gi|194902322|ref|XP_001980672.1| GG17285 [Drosophila erecta]
gi|190652375|gb|EDV49630.1| GG17285 [Drosophila erecta]
Length = 586
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 121/149 (81%), Gaps = 4/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK SGY + P EADVI+++TCA+R+ AE ++W+RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKESGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P ++++
Sbjct: 212 HYGN-SAINVLLSLDETYADVMPVRLNSE 239
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ E +AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLHSIVAEAKALAEQGVKEVT 291
Query: 61 GCQMNVN 67
NVN
Sbjct: 292 LLGQNVN 298
>gi|198450948|ref|XP_001358190.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
gi|198131266|gb|EAL27327.2| GA19527 [Drosophila pseudoobscura pseudoobscura]
Length = 589
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%), Gaps = 5/169 (2%)
Query: 34 GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
G E S P + +D + KV+FEV+GCQMN NDTEVVWSILK GY + +AD++
Sbjct: 80 GVETSVPYLNAID-FQGHGRKVHFEVYGCQMNTNDTEVVWSILKQHGYERCQELEDADLV 138
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
+++TCA+RE AE K+W+RLR R+MKQ R PL++ +LGCMAERLK+ LL++EQ +
Sbjct: 139 MLVTCAVREGAEQKIWNRLRHLRAMKQKRGAKRQ-PLQLTLLGCMAERLKERLLDQEQCV 197
Query: 154 DLVAGPDSYKDLPRLLALT--YSNQTAINVLLSLDETYADITPKAVSTD 200
D++AGPDSYKDLPRLLA++ Y N +AINVLLSLDETYAD+ P +++D
Sbjct: 198 DVIAGPDSYKDLPRLLAVSRHYGN-SAINVLLSLDETYADVMPVRLNSD 245
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN DS +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI++EVRAL + EV
Sbjct: 238 MPVRLNSDSPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVNEVRALQVQGVKEVT 297
Query: 61 GCQMNVN 67
NVN
Sbjct: 298 LLGQNVN 304
>gi|195330093|ref|XP_002031743.1| GM26169 [Drosophila sechellia]
gi|194120686|gb|EDW42729.1| GM26169 [Drosophila sechellia]
Length = 583
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 117/143 (81%), Gaps = 4/143 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK +GY + P EADVI+++TCA+R+ AE ++W+RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYMRCQEPEEADVIMLVTCAVRDGAEQRIWNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITP 194
Y N +AINVLLSLDETYAD+ P
Sbjct: 212 HYGN-SAINVLLSLDETYADVMP 233
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN-----DTEVVWSILKSS---GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
NVN + LK++ G+S V P+ +R A+ R+
Sbjct: 292 LLGQNVNSYRDRSAQEEQESLKATPVPGFSTVYKPKAGGTPFA--ALLRSVAQAVPEMRI 349
Query: 113 RF 114
RF
Sbjct: 350 RF 351
>gi|194224319|ref|XP_001500825.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Equus
caballus]
Length = 539
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +D++ KVY E +GCQMNVNDTE+ WSIL+ SGY + N+ +EADVIL++TC+
Sbjct: 89 PPYLTVDQLLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTNNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL R++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLRALKTKRPRSRV-PLRIGILGCMAERLKEEILNREKIVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 208 DAYRDLPRLLAVAESGQQAANVLLSLDETYADIMPVQTS 246
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SI++EVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASIVEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 301 LLGQNVNSFRDNSEVQFNNAMSTSLSR 327
>gi|348564026|ref|XP_003467807.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Cavia
porcellus]
Length = 587
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 117/153 (76%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E+ KVY E +GCQMNVNDTE+ WSIL+ SGY + N+ +EADVIL++TC+IRE AE
Sbjct: 93 EELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTNNVQEADVILLVTCSIREKAE 152
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL +++K + RT PL+IG+LGCMAERLK+ +L +E+ +DL+AGPD+Y+DL
Sbjct: 153 QTIWNRLHQLKTLKTKRLRSRT-PLRIGILGCMAERLKEEILNREKLVDLLAGPDAYRDL 211
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 212 PRLLAIAESGQQAANVLLSLDETYADVLPVQTS 244
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + + SAFVSIMRGC+NMC+YCIVPFTRGRERSRP+ SIL+EVR LSD+ EV
Sbjct: 239 LPVQTSPSATSAFVSIMRGCNNMCSYCIVPFTRGRERSRPVASILEEVRKLSDQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|328787511|ref|XP_393868.4| PREDICTED: CDK5RAP1-like protein-like [Apis mellifera]
Length = 596
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 118/155 (76%), Gaps = 4/155 (2%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P + + KVYFEV+GCQMNVNDTEV+WSILKS GY KV +EA++IL +TC+
Sbjct: 97 PNIPYIQNINGSDQKVYFEVYGCQMNVNDTEVIWSILKSHGYKKVEDIKEANIILFITCS 156
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IR+NAE K+W+RL + + KK + P+KIG+LGCMAERLK +LE+ + +D++AGP
Sbjct: 157 IRDNAEQKIWNRL---TDLNHLRKKKKKNPIKIGLLGCMAERLKDKILERGKLVDVIAGP 213
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
DSYKDLPRLL++ N+TAINV+LS DETYADITP
Sbjct: 214 DSYKDLPRLLSIP-DNETAINVVLSFDETYADITP 247
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN +S SAFV+IMRGCDNMCTYCIVPFTRGRERSRP++SI+ E+++LSD E+
Sbjct: 248 VRLNPNSTSAFVTIMRGCDNMCTYCIVPFTRGRERSRPIESIVKEIQSLSDDGVKEIVLL 307
Query: 63 QMNVN 67
NVN
Sbjct: 308 GQNVN 312
>gi|50758889|ref|XP_417464.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Gallus
gallus]
Length = 562
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 116/150 (77%), Gaps = 3/150 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVNDTE+ W+IL+ SGY++ EADVIL++TC++R+ AE +W+RL+
Sbjct: 76 KVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWNRLQ 135
Query: 114 FYRSMKQIHKKHRT-FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+++K ++H+ PL+IG+LGCMAERLK+ +L +E+ +D+VAGPD+Y+DLPRLLA+
Sbjct: 136 HLKALKA--RRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAMA 193
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDGR 202
S Q A NVLLSLDETYADI P S G+
Sbjct: 194 ESGQQAANVLLSLDETYADILPVQTSAGGK 223
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ EV
Sbjct: 214 LPVQTSAGGKTAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILQEVKMLSDQGVKEVT 273
Query: 61 GCQMNVN 67
NVN
Sbjct: 274 LLGQNVN 280
>gi|91088221|ref|XP_973511.1| PREDICTED: similar to CG6345 CG6345-PA [Tribolium castaneum]
gi|270011824|gb|EFA08272.1| hypothetical protein TcasGA2_TC005903 [Tribolium castaneum]
Length = 610
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 112/143 (78%), Gaps = 5/143 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYF+V+GCQMNVNDTE++WSIL+ Y K ++ EADV+L++TCAIRE AE K+W RL
Sbjct: 112 KVYFDVYGCQMNVNDTEIIWSILQKHNYLKTSNLLEADVVLIVTCAIREGAESKIWGRLE 171
Query: 114 FYRSMKQIHKKHRTFP--LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ R I+K TF K+GVLGCMAERLK +LEK + +DLVAGPD+Y+DLPRLLAL
Sbjct: 172 YLRG---INKSKATFSSRFKVGVLGCMAERLKHKVLEKNKTVDLVAGPDAYRDLPRLLAL 228
Query: 172 TYSNQTAINVLLSLDETYADITP 194
T ++Q ++NVLLS DETYADI P
Sbjct: 229 TENDQKSVNVLLSFDETYADIMP 251
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLNE+SVSAFVSIMRGCDNMCTYCIVPFTRG+ERSRP+ SIL E+ LS + EV
Sbjct: 250 MPVRLNENSVSAFVSIMRGCDNMCTYCIVPFTRGKERSRPVDSILREIELLSQQGVKEVT 309
Query: 61 GCQMNVN 67
NVN
Sbjct: 310 LLGQNVN 316
>gi|344279865|ref|XP_003411706.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Loxodonta
africana]
Length = 588
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ READV+L++TC+
Sbjct: 88 PPYLTVDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLREADVVLLVTCS 147
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RLR + +K R PL+IG+LGCMAERLK+ +L +E+ +DL+AGP
Sbjct: 148 IREKAEQTIWNRLRQLKVLKTKRPLSRV-PLRIGILGCMAERLKEEILNREKMVDLLAGP 206
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 207 DAYRDLPRLLAIAESGQQAANVLLSLDETYADVMPVQTS 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 240 MPVQTSRSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 299
Query: 61 GCQMNVN 67
NVN
Sbjct: 300 LLGQNVN 306
>gi|195499798|ref|XP_002097099.1| GE24685 [Drosophila yakuba]
gi|194183200|gb|EDW96811.1| GE24685 [Drosophila yakuba]
Length = 583
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 121/149 (81%), Gaps = 4/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SIL+ +GY + P EADVI+++TCA+R+ AE ++W+RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILQENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKS-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P ++++
Sbjct: 212 HYGN-SAINVLLSLDETYADVMPVRLNSE 239
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 10/122 (8%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP++SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLESIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN--------DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
NVN + + G+S V P+ +R A+ R+
Sbjct: 292 LLGQNVNSYRDRSGLEAQESLKATPVPGFSTVYKPKTGGTPFA--ALLRSVAQAVPEMRI 349
Query: 113 RF 114
RF
Sbjct: 350 RF 351
>gi|170040301|ref|XP_001847942.1| CDK5 regulatory subunit-associated protein 1 [Culex
quinquefasciatus]
gi|167863869|gb|EDS27252.1| CDK5 regulatory subunit-associated protein 1 [Culex
quinquefasciatus]
Length = 579
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 1/141 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTE+VWSILK Y + ++ADV+L+MTCAIR+ AE VW+RL+
Sbjct: 79 KVFFEVYGCQMNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRLK 138
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK+ ++ L++GVLGCMAERLK+ L+EKE ++D+VAGPDSYKDLPRLLA+
Sbjct: 139 HVRLMKE-RRESEGRALQVGVLGCMAERLKRQLVEKEGSVDVVAGPDSYKDLPRLLAVGQ 197
Query: 174 SNQTAINVLLSLDETYADITP 194
Q AINVLLSLDETYAD+ P
Sbjct: 198 KGQKAINVLLSLDETYADVMP 218
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+L+ S +A+VSIMRGCDNMC+YCIVPFTRG+ERSRP+ SI DE L K E+
Sbjct: 217 MPVKLDRKSRTAYVSIMRGCDNMCSYCIVPFTRGKERSRPVASIRDEALHLEAKGIKEIT 276
Query: 61 GCQMNVN 67
NVN
Sbjct: 277 LLGQNVN 283
>gi|443693195|gb|ELT94625.1| hypothetical protein CAPTEDRAFT_178593 [Capitella teleta]
Length = 621
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 122/155 (78%), Gaps = 2/155 (1%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
+V KV+FE +GCQMNVNDTE+ W+ILK +G+ K + +++DVILVMTC+IRE AE
Sbjct: 116 DVNGQQRKVFFETYGCQMNVNDTEIAWAILKENGFIKADDIKQSDVILVMTCSIREGAED 175
Query: 107 KVWDRLRFYRSMKQIHKKHR--TFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
K+W RL++ +S+KQ+ K+ + P+KIG+LGCMAERLK+ L+ E+A+D+V GPD+Y+D
Sbjct: 176 KIWKRLKYLKSLKQLRKQKQPSAPPVKIGILGCMAERLKEKLISTERAVDVVCGPDAYRD 235
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVST 199
LPRLL++ + Q+A+NV LSL+ETYAD+ P +++
Sbjct: 236 LPRLLSVAGTGQSAVNVQLSLEETYADVMPVRINS 270
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 65/98 (66%), Gaps = 10/98 (10%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VR+N S SAF+SIMRGCDNMCTYCIVPFTRGRERSRP+ SI++EV+ LSD+ EV
Sbjct: 264 MPVRINSTSTSAFISIMRGCDNMCTYCIVPFTRGRERSRPIDSIIEEVKILSDQGLREVT 323
Query: 61 GCQMNVN-----DTEVVWSILK-----SSGYSKVNHPR 88
NVN + V +SI + S G+ V P+
Sbjct: 324 LLGQNVNSYRDTSSAVSYSIPEDKTKNSRGFKTVYKPK 361
>gi|195571987|ref|XP_002103982.1| GD20720 [Drosophila simulans]
gi|194199909|gb|EDX13485.1| GD20720 [Drosophila simulans]
Length = 583
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 117/143 (81%), Gaps = 4/143 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK +GY + P EADVI+++TCA+R+ AE ++W+RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LL++EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLDQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITP 194
Y N +AINVLLSLDETYAD+ P
Sbjct: 212 HYGN-SAINVLLSLDETYADVMP 233
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN-----DTEVVWSILKSS---GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
NVN + LK++ G+S V P+ +R A+ R+
Sbjct: 292 LLGQNVNSYRDRSAQEEQEPLKATAVPGFSTVYKPKTGGTPFA--ALLRSVAQAVPEMRI 349
Query: 113 RF 114
RF
Sbjct: 350 RF 351
>gi|194379922|dbj|BAG58313.1| unnamed protein product [Homo sapiens]
Length = 534
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 34 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 93
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 94 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 152
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 153 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 194
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 186 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 245
Query: 61 GCQMNVN 67
NVN
Sbjct: 246 LLGQNVN 252
>gi|14042133|dbj|BAB55120.1| unnamed protein product [Homo sapiens]
Length = 395
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE
Sbjct: 1 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+
Sbjct: 61 AEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYR 119
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 120 DLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 157
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVP TRGRERSRP+ S L+EV+ LS++ EV
Sbjct: 149 MPVQTSASATSAFVSIMRGCDNMCSYCIVPLTRGRERSRPIASTLEEVKKLSEQGLKEVT 208
Query: 61 GCQMNVN 67
NVN
Sbjct: 209 LLGQNVN 215
>gi|119596724|gb|EAW76318.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Homo
sapiens]
Length = 291
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALS 52
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLS 290
>gi|119596728|gb|EAW76322.1| CDK5 regulatory subunit associated protein 1, isoform CRA_e [Homo
sapiens]
Length = 510
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293
>gi|62897049|dbj|BAD96465.1| CDK5 regulatory subunit associated protein 1 isoform a variant
[Homo sapiens]
Length = 586
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|10436223|dbj|BAB14760.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|28872782|ref|NP_057492.2| CDK5 regulatory subunit-associated protein 1 isoform a [Homo
sapiens]
gi|29791797|gb|AAH50706.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens]
gi|119596729|gb|EAW76323.1| CDK5 regulatory subunit associated protein 1, isoform CRA_f [Homo
sapiens]
gi|208965952|dbj|BAG72990.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
Length = 587
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|28872784|ref|NP_057166.3| CDK5 regulatory subunit-associated protein 1 isoform b [Homo
sapiens]
gi|119596725|gb|EAW76319.1| CDK5 regulatory subunit associated protein 1, isoform CRA_b [Homo
sapiens]
gi|158257582|dbj|BAF84764.1| unnamed protein product [Homo sapiens]
Length = 497
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE
Sbjct: 1 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+
Sbjct: 61 AEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYR 119
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 120 DLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 157
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 149 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 208
Query: 61 GCQMNVN 67
NVN
Sbjct: 209 LLGQNVN 215
>gi|42525237|gb|AAS18318.1| CDK5 regulatory subunit associated protein 1 transcript variant 4
[Homo sapiens]
Length = 426
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|119596726|gb|EAW76320.1| CDK5 regulatory subunit associated protein 1, isoform CRA_c [Homo
sapiens]
Length = 592
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPPR 298
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 299 PPKVLGLQ 306
>gi|42525235|gb|AAS18317.1| CDK5 regulatory subunit associated protein 1 transcript variant 3
[Homo sapiens]
Length = 574
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|32129446|sp|Q96SZ6.2|CK5P1_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1;
AltName: Full=CDK5 activator-binding protein C42
gi|119596731|gb|EAW76325.1| CDK5 regulatory subunit associated protein 1, isoform CRA_h [Homo
sapiens]
Length = 601
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPPR 298
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 299 PPKVLGLQ 306
>gi|195443590|ref|XP_002069485.1| GK11551 [Drosophila willistoni]
gi|194165570|gb|EDW80471.1| GK11551 [Drosophila willistoni]
Length = 576
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 123/149 (82%), Gaps = 4/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVVWSIL+ +GY + + EADVI+++TCA+R+ AE K+W+RLR
Sbjct: 89 KVHFEVYGCQMNTNDTEVVWSILQENGYQRCHDQNEADVIMLVTCAVRDGAEQKIWNRLR 148
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R++K+ + R PL++ +LGCMAERLK+ LLE+E+++D++AGPDSYKDLPRLLA++
Sbjct: 149 HLRALKE-KRSSRRGPLQLTLLGCMAERLKERLLEQEKSVDVIAGPDSYKDLPRLLAVSR 207
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P ++++
Sbjct: 208 HYGN-SAINVLLSLDETYADVMPVRLNSE 235
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMC+YCIVPFTRGRERSRP++SI+ EV L ++ EV
Sbjct: 228 MPVRLNSESPTAFVSIMRGCDNMCSYCIVPFTRGRERSRPLESIVREVLTLQEQGVKEVT 287
Query: 61 GCQMNVN 67
NVN
Sbjct: 288 LLGQNVN 294
>gi|405969792|gb|EKC34743.1| CDK5 regulatory subunit-associated protein 1 [Crassostrea gigas]
Length = 628
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 119/153 (77%), Gaps = 3/153 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYF+ +GCQMN NDTE+ WSILK GY+K EADVIL+MTC+IR+NAE K+W+ +
Sbjct: 105 KVYFDTYGCQMNFNDTEIAWSILKDKGYAKAESINEADVILLMTCSIRDNAEQKIWNMVN 164
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K+ K + PLKIG+LGCMAERLK +L+KE+ +DLV GPD+Y+DLPRLL++T
Sbjct: 165 IYKGLKRRGGKKK--PLKIGILGCMAERLKHKILDKEKMVDLVCGPDAYRDLPRLLSVTS 222
Query: 174 -SNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
S Q+A+NVLLSL+ETYAD+ P ++++ + +
Sbjct: 223 GSGQSAVNVLLSLEETYADVMPVRINSNAKTAF 255
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VR+N ++ +AFVSI RGC+NMC+YCIVP+TRGRERSRP+ SI++EVR LSD+ EV
Sbjct: 243 MPVRINSNAKTAFVSITRGCNNMCSYCIVPYTRGRERSRPVSSIVEEVRKLSDQGIKEVT 302
Query: 61 GCQMNVN 67
NVN
Sbjct: 303 LLGQNVN 309
>gi|397487349|ref|XP_003814763.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 3
[Pan paniscus]
gi|397487351|ref|XP_003814764.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 4
[Pan paniscus]
Length = 496
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE A
Sbjct: 1 MDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+D
Sbjct: 61 EQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 119
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 120 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 156
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 148 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 207
Query: 61 GCQMNVN 67
NVN
Sbjct: 208 LLGQNVN 214
>gi|397487347|ref|XP_003814762.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
[Pan paniscus]
Length = 510
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293
>gi|402882757|ref|XP_003904900.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
partial [Papio anubis]
Length = 281
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE A
Sbjct: 1 MDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+D
Sbjct: 61 EQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRD 119
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
LPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 120 LPRLLAIAESGQQAANVLLSLDETYADVMPVQTS 153
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 148 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQGLKEVT 207
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 208 LLGQNVNSFRDNSEVQFNNAVSTNLSR 234
>gi|397487345|ref|XP_003814761.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
[Pan paniscus]
Length = 587
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|417403099|gb|JAA48373.1| Putative cdk5 activator-binding protein [Desmodus rotundus]
Length = 592
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGRHRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTDNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PLK+G+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLKTLKTKRLRSRV-PLKVGILGCMAERLKEEILHREKMVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 208 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 246
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 301 LLGQNVNSFRDNSEVQFNNAVSTNLSR 327
>gi|332248856|ref|XP_003273581.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
[Nomascus leucogenys]
Length = 546
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P LDE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 123 PPYLTLDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 182
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PLKIG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 183 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLKIGILGCMAERLKEEILNREKMVDILAGP 241
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLP+LLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 242 DAYRDLPQLLAVAESGQQAANVLLSLDETYADVMPVQTS 280
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 275 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 329
>gi|332248854|ref|XP_003273580.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
[Nomascus leucogenys]
Length = 623
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P LDE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 123 PPYLTLDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 182
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PLKIG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 183 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLKIGILGCMAERLKEEILNREKMVDILAGP 241
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLP+LLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 242 DAYRDLPQLLAVAESGQQAANVLLSLDETYADVMPVQTS 280
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 275 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 334
Query: 61 GCQMNVN 67
NVN
Sbjct: 335 LLGQNVN 341
>gi|395752216|ref|XP_003779385.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Pongo
abelii]
Length = 252
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE A
Sbjct: 92 MDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKA 151
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+D
Sbjct: 152 EQTIWNRLHQLKALKTRRPRSR-VPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
>gi|431894301|gb|ELK04101.1| CDK5 regulatory subunit-associated protein 1 [Pteropus alecto]
Length = 580
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ +GY + N+ +EADVIL++TC+
Sbjct: 79 PPYLTVDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKNGYLRTNNLQEADVILLITCS 138
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL + +K + R PL+IG+LGCMAERLK+ +L++E+ +D++AGP
Sbjct: 139 IREKAEQTIWNRLHQLKVLKTKRLRSRV-PLRIGILGCMAERLKEEILKREKMVDILAGP 197
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S +
Sbjct: 198 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSLNA 239
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + ++ SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 231 MPVQTSLNATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 290
Query: 61 GCQMNVN 67
NVN
Sbjct: 291 LLGQNVN 297
>gi|390462342|ref|XP_002806791.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Callithrix
jacchus]
Length = 531
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 119/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 31 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 90
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 91 IREKAEQTIWNRLHQLKALKTRRLRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGP 149
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 150 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 188
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 183 MPVQTSPSATSAFVSIMRGCDNMCTYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 242
Query: 61 GCQMNVN 67
NVN
Sbjct: 243 LLGQNVN 249
>gi|297260004|ref|XP_001103977.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Macaca mulatta]
Length = 483
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE A
Sbjct: 1 MDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+D
Sbjct: 61 EQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRD 119
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITP 194
LPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 120 LPRLLAVAESGQQAANVLLSLDETYADVMP 149
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ N + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 148 MPVQTNPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQGLKEVT 207
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 208 LLGQNVNSFRDNSEVQFNNAVSTNLSR 234
>gi|410055010|ref|XP_003953753.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
[Pan troglodytes]
Length = 510
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
+RE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 VREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293
>gi|410291124|gb|JAA24162.1| CDK5 regulatory subunit associated protein 1 [Pan troglodytes]
Length = 587
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
+RE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 VREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|410055012|ref|XP_003953754.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 3
[Pan troglodytes]
gi|410055014|ref|XP_003953755.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 4
[Pan troglodytes]
Length = 496
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC++RE A
Sbjct: 1 MDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSVREKA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+D
Sbjct: 61 EQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 119
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 120 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 156
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 148 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 207
Query: 61 GCQMNVN 67
NVN
Sbjct: 208 LLGQNVN 214
>gi|380813662|gb|AFE78705.1| CDK5 regulatory subunit-associated protein 1 isoform a [Macaca
mulatta]
gi|383419105|gb|AFH32766.1| CDK5 regulatory subunit-associated protein 1 isoform a [Macaca
mulatta]
gi|384947622|gb|AFI37416.1| CDK5 regulatory subunit-associated protein 1 isoform a [Macaca
mulatta]
Length = 587
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP 240
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ N + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTNPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 299 LLGQNVNSFRDNSEVQFNNAVSTNLSR 325
>gi|332858143|ref|XP_001155512.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
[Pan troglodytes]
gi|410214662|gb|JAA04550.1| CDK5 regulatory subunit associated protein 1 [Pan troglodytes]
gi|410249024|gb|JAA12479.1| CDK5 regulatory subunit associated protein 1 [Pan troglodytes]
gi|410337905|gb|JAA37899.1| CDK5 regulatory subunit associated protein 1 [Pan troglodytes]
Length = 587
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
+RE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 VREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>gi|12654747|gb|AAH01215.1| CDK5RAP1 protein [Homo sapiens]
gi|325463933|gb|ADZ15737.1| CDK5 regulatory subunit associated protein 1 [synthetic construct]
Length = 510
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLP+LLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPQLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 293
>gi|355563214|gb|EHH19776.1| CDK5 activator-binding protein C42 [Macaca mulatta]
gi|355784568|gb|EHH65419.1| CDK5 activator-binding protein C42 [Macaca fascicularis]
Length = 601
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLTMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP 240
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ N + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V +
Sbjct: 239 MPVQTNPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQVIYPPR 298
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 299 PPKVLGLQ 306
>gi|326932093|ref|XP_003212155.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Meleagris gallopavo]
Length = 541
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y E +GCQMNVNDTE+ W+IL+ SGY++ EADVIL++TC++R+ AE +W+RL+
Sbjct: 55 ELYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQAIWNRLQ 114
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K ++ PL+IG+LGCMAERLK+ +L +E+ +D+VAGPD+Y+DLPRLLA+
Sbjct: 115 HLKALKA-RRRQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAVAQ 173
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
S Q A NVLLSLDETYADI P S G+ +
Sbjct: 174 SGQQAANVLLSLDETYADILPVQTSAGGKTAF 205
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ EV
Sbjct: 193 LPVQTSAGGKTAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILQEVKILSDQGVKEVT 252
Query: 61 GCQMNVN 67
NVN
Sbjct: 253 LLGQNVN 259
>gi|391344798|ref|XP_003746682.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Metaseiulus occidentalis]
Length = 541
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 118/160 (73%), Gaps = 9/160 (5%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
++DE L KV+FEV+GCQMNVNDTE+VWSILK GY +V + A+V+L+MTC+IRE
Sbjct: 50 LIDESAQLK-KVFFEVYGCQMNVNDTEIVWSILKKKGYERVLNHNAANVVLIMTCSIREG 108
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE K+W RL+ R HK+ R L++GVLGCMAERLK LLEKE+++D+VAGPDSY+
Sbjct: 109 AEQKIWRRLQDLRK----HKQRRD--LQVGVLGCMAERLKTQLLEKEKSVDVVAGPDSYR 162
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRR 203
DLPRLL Q +NV LSLDETYAD+TP V D RR
Sbjct: 163 DLPRLLETASGGQAGVNVQLSLDETYADVTP--VRLDERR 200
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+E +AFVSIMRGC+NMCTYCIVPFTRGRERSRPM SILDEVR LS EV
Sbjct: 194 VRLDERRKTAFVSIMRGCNNMCTYCIVPFTRGRERSRPMNSILDEVRHLSLNGVKEVTLL 253
Query: 63 QMNVN 67
NVN
Sbjct: 254 GQNVN 258
>gi|426241330|ref|XP_004014544.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Ovis
aries]
Length = 588
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ +VY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 88 PPYLTVDELLGRQRRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 147
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +S+K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 148 IREKAEQTIWNRLHQLKSLKSKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 206
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 207 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 240 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 299
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 300 LLGQNVNSFRDNSEVQFNNAVSTNLSR 326
>gi|440905124|gb|ELR55550.1| CDK5 regulatory subunit-associated protein 1 [Bos grunniens mutus]
Length = 598
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ +VY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGRQRRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +S+K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLKSLKSKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 208 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 246
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++V
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQV 295
>gi|354477922|ref|XP_003501166.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Cricetulus
griseus]
gi|344246635|gb|EGW02739.1| CDK5 regulatory subunit-associated protein 1 [Cricetulus griseus]
Length = 591
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SG+ + ++ +EADVIL++TC+IRE AE
Sbjct: 95 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGFLRTSNLQEADVILLVTCSIREKAE 154
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL +++K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 155 QTIWNRLHQLKALKTKRSRSRV-PLRIGILGCMAERLKGEILNREKTVDLLAGPDAYRDL 213
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 214 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 246
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN 67
NVN
Sbjct: 301 LLGQNVN 307
>gi|26353536|dbj|BAC40398.1| unnamed protein product [Mus musculus]
Length = 588
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 92 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 151
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 152 QTIWNRLHQLKVLKTKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 210
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 211 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 243
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 238 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 297
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 298 LLGQNVNSFRDNSEVQFNNAGSANLSR 324
>gi|13385358|ref|NP_080152.1| CDK5 regulatory subunit-associated protein 1 [Mus musculus]
gi|32129439|sp|Q8BTW8.2|CK5P1_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1;
AltName: Full=CDK5 activator-binding protein C42
gi|12845305|dbj|BAB26700.1| unnamed protein product [Mus musculus]
gi|19264024|gb|AAH25132.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
gi|148674120|gb|EDL06067.1| CDK5 regulatory subunit associated protein 1 [Mus musculus]
Length = 588
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 92 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 151
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 152 QTIWNRLHQLKVLKTKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 210
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 211 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 243
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 238 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 297
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 298 LLGQNVNSFRDNSEVQFNNAGSANLSR 324
>gi|21902527|ref|NP_663773.1| CDK5 regulatory subunit-associated protein 1 [Rattus norvegicus]
gi|32129430|sp|Q9JLH6.1|CK5P1_RAT RecName: Full=CDK5 regulatory subunit-associated protein 1;
AltName: Full=CDK5 activator-binding protein C42
gi|7330738|gb|AAF60223.1|AF177477_1 CDK5 activator-binding protein [Rattus norvegicus]
gi|45219720|gb|AAH66666.1| Cdk5rap1 protein [Rattus norvegicus]
gi|149030944|gb|EDL85971.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149030945|gb|EDL85972.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 586
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 90 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 149
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 150 QTIWNRLHQLKVLKAKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 208
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 209 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 241
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 236 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 295
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV +S S+ S+
Sbjct: 296 LLGQNVNSFRDNSEVQFSSTGSANLSR 322
>gi|307200648|gb|EFN80756.1| CDK5 regulatory subunit-associated protein 1 [Harpegnathos
saltator]
Length = 1337
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 120/157 (76%), Gaps = 3/157 (1%)
Query: 40 PMQSI--LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
P +SI + ++R KVYFE++GCQMNVNDTE++WSILK+ GY + AD++L++T
Sbjct: 55 PEESIPYVQDIRGEGQKVYFEIYGCQMNVNDTEIIWSILKARGYQQTKDMEGADIVLLIT 114
Query: 98 CAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
C+IR+NAE KVW++L + ++ +K +KIG+LGCMAERLK +L+K + +D++A
Sbjct: 115 CSIRDNAEQKVWNKLEYLNVIRNKRRKKSGVSMKIGLLGCMAERLKTKILDKGKLVDVIA 174
Query: 158 GPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
GPDSYKDLPRLLA+T S +TA+NV+LS DETYAD+ P
Sbjct: 175 GPDSYKDLPRLLAVTDS-ETAVNVVLSFDETYADVMP 210
>gi|410954014|ref|XP_003983662.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1 [Felis catus]
Length = 584
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WS+L+ SGY + + +EADVIL++TC+
Sbjct: 83 PPYLTVDELSGRQRKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCS 142
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 143 IREKAEQTIWNRLHQLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 201
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 202 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 240
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 235 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 294
Query: 61 GCQMNVN 67
NVN
Sbjct: 295 LLGQNVN 301
>gi|432858872|ref|XP_004068980.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Oryzias latipes]
Length = 579
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMNVNDTE+ WSIL+ GY + EADV+L++TC+IRE AE +W+R
Sbjct: 93 SRKVYFETYGCQMNVNDTEIAWSILQKKGYERTAQLSEADVVLLVTCSIREKAEQTIWNR 152
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +MK K + P+KIGVLGCMAERLK LLE+E+ +D++AGPD+Y+DLPRLLA+
Sbjct: 153 LKQLTAMKNKRMKTPS-PMKIGVLGCMAERLKTELLEREKLVDVLAGPDAYRDLPRLLAV 211
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
Q A NVLLSL+ETYAD+ P ++ G
Sbjct: 212 AEGGQQASNVLLSLEETYADVMPVQLAPQG 241
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 51/67 (76%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+L SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LSD+ EV
Sbjct: 233 MPVQLAPQGHSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIGSILEEVRILSDQGVKEVT 292
Query: 61 GCQMNVN 67
NVN
Sbjct: 293 LLGQNVN 299
>gi|301765780|ref|XP_002918310.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Ailuropoda melanoleuca]
Length = 583
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + + +EADVIL++TC+
Sbjct: 83 PPYLTVDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCS 142
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 143 IREKAEQTIWNRLHQLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 201
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 202 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 240
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 235 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVDSILEEVRKLSEQGLKEVT 294
Query: 61 GCQMNVN 67
NVN
Sbjct: 295 LLGQNVN 301
>gi|156538649|ref|XP_001607691.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Nasonia vitripennis]
Length = 660
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 115/149 (77%), Gaps = 5/149 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY EV+GCQMNVNDTEVV +ILK Y +A+VIL++TCAIRENAE KVW++L+
Sbjct: 164 KVYLEVYGCQMNVNDTEVVSAILKKHNYKITKDIMDANVILLVTCAIRENAENKVWNKLK 223
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+R +K+ R KIG+LGCMAERLK ++EKE+ +D++AGPDSYKDLPRLLA++
Sbjct: 224 QFRILKE-----RKVVSKIGLLGCMAERLKHKIIEKEKIVDIIAGPDSYKDLPRLLAISN 278
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGR 202
++TAINV LSLDETYAD+TP ++ D +
Sbjct: 279 EHETAINVALSLDETYADVTPVRLNPDSK 307
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN DS +A+VSIMRGCDNMCTYCIVPFTRGRERSRP+ SILDEV+ LSD+ EV
Sbjct: 300 VRLNPDSKAAYVSIMRGCDNMCTYCIVPFTRGRERSRPISSILDEVQQLSDQGIKEVTLL 359
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
NVN I +S Y+ + P++ +++
Sbjct: 360 GQNVNS---YRDISESKYYTSADTPQKTNLV 387
>gi|281339290|gb|EFB14874.1| hypothetical protein PANDA_006744 [Ailuropoda melanoleuca]
Length = 567
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + + +EADVIL++TC+
Sbjct: 83 PPYLTVDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCS 142
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 143 IREKAEQTIWNRLHQLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 201
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 202 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 240
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++V
Sbjct: 235 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVDSILEEVRKLSEQV 289
>gi|432101484|gb|ELK29666.1| CDK5 regulatory subunit-associated protein 1 [Myotis davidii]
Length = 614
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PLKIG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLKALKTKRLRSRV-PLKIGILGCMAERLKEEILNREKMVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLL + S Q A NVLLSLDETYAD+ P S
Sbjct: 208 DAYRDLPRLLTVAESGQQAANVLLSLDETYADVMPVQTS 246
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN 67
NVN
Sbjct: 301 LLGQNVN 307
>gi|195107983|ref|XP_001998572.1| GI23564 [Drosophila mojavensis]
gi|193915166|gb|EDW14033.1| GI23564 [Drosophila mojavensis]
Length = 588
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 113/143 (79%), Gaps = 4/143 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+V+FEV+GCQMN NDTEVVWSILK GY + +DV++++TCA+RE AE K+W+RLR
Sbjct: 102 RVHFEVYGCQMNTNDTEVVWSILKEHGYQRSEDVANSDVVMLVTCAVREGAEQKIWNRLR 161
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R++K+ R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA+
Sbjct: 162 HLRALKEKRGSKRA-PLQLTILGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220
Query: 173 -YSNQTAINVLLSLDETYADITP 194
Y N +AINVLLSLDETYAD+ P
Sbjct: 221 HYGN-SAINVLLSLDETYADVMP 242
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EVR L ++ EV
Sbjct: 241 MPVRLNSHSPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLDSIVHEVRTLQEQGVKEVT 300
Query: 61 GCQMNVN-------DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
NVN + + + G+S V P+ L + ++ AE R+R
Sbjct: 301 LLGQNVNSYRDRTSENSTKAAGNTAPGFSTVYKPKTGG--LPFSVLLQSVAEAVPEMRIR 358
Query: 114 F 114
F
Sbjct: 359 F 359
>gi|21356207|ref|NP_650002.1| CG6345 [Drosophila melanogaster]
gi|32129453|sp|Q9VGZ1.1|CK5P1_DROME RecName: Full=CDK5RAP1-like protein
gi|7299338|gb|AAF54531.1| CG6345 [Drosophila melanogaster]
gi|17945319|gb|AAL48716.1| RE15838p [Drosophila melanogaster]
Length = 583
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 116/143 (81%), Gaps = 4/143 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK +GY + P EADVI+++TCA+R+ AE ++ +RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITP 194
Y N +AINVLLSLDETYAD+ P
Sbjct: 212 HYGN-SAINVLLSLDETYADVMP 233
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN 67
NVN
Sbjct: 292 LLGQNVN 298
>gi|195388802|ref|XP_002053067.1| GJ17100 [Drosophila virilis]
gi|194151153|gb|EDW66587.1| GJ17100 [Drosophila virilis]
Length = 283
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+V+FEV+GCQMN NDTEVVWSIL+ GY + ADV++++TCA+R+ AE K+W+RLR
Sbjct: 102 RVHFEVYGCQMNTNDTEVVWSILQKHGYQRCEDAANADVVMLVTCAVRDGAEQKIWNRLR 161
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R++K+ R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA+
Sbjct: 162 HLRALKERRGTKRQ-PLQLTILGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ +AINVLLSLDETYAD+ P +S+D
Sbjct: 221 HYGNSAINVLLSLDETYADVMPVRLSSDS 249
>gi|328713992|ref|XP_003245232.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Acyrthosiphon pisum]
Length = 580
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 116/149 (77%), Gaps = 3/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY EV+GCQMNVND E+VWSIL++ GY K N EADVIL++TCAIR++AE K+W R++
Sbjct: 87 KVYIEVYGCQMNVNDAEIVWSILQNEGYIKTNSIYEADVILLVTCAIRDSAENKIWTRIK 146
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLL-EKEQALDLVAGPDSYKDLPRLLALT 172
RS+K+ K PLKIG+LGCMAERLK+ L+ + + A+DLVAGPDSY+DLPRLLA T
Sbjct: 147 QLRSVKRWRGKLD--PLKIGILGCMAERLKEKLVSDSKGAIDLVAGPDSYRDLPRLLAKT 204
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q AINVLLS DETYA+I P ++ D
Sbjct: 205 EAGQKAINVLLSFDETYAEIKPVKLNDDN 233
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 57/65 (87%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
V+LN+D+V+A+VSIMRGCDNMCTYCIVPFTRGRERSRP++SILDE++ LS+K + EV
Sbjct: 227 VKLNDDNVTAYVSIMRGCDNMCTYCIVPFTRGRERSRPVESILDEIKYLSEKGFKEVTLL 286
Query: 63 QMNVN 67
NVN
Sbjct: 287 GQNVN 291
>gi|115497176|ref|NP_001069114.1| CDK5 regulatory subunit-associated protein 1 [Bos taurus]
gi|115304933|gb|AAI23653.1| CDK5 regulatory subunit associated protein 1 [Bos taurus]
gi|296481106|tpg|DAA23221.1| TPA: CDK5 regulatory subunit associated protein 1 [Bos taurus]
Length = 589
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ +VY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGRQRRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +S+K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLKSLKSKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLP+LLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 208 DAYRDLPQLLAVAESGQQAANVLLSLDETYADVMPVQTS 246
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 301 LLGQNVNSFRDNSEVQFNNAVSTNLSR 327
>gi|73992243|ref|XP_534385.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Canis
lupus familiaris]
Length = 583
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++E+ KVY E +GCQMNVNDTE+ WS+L+ SGY + + +EADVIL++TC+
Sbjct: 83 PPYVTVEELLGRQRKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCS 142
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL+ +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 143 IREKAEQTIWNRLQQLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 201
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 202 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 240
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 235 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 294
Query: 61 GCQMNVN 67
NVN
Sbjct: 295 LLGQNVN 301
>gi|403281254|ref|XP_003932108.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Saimiri
boliviensis boliviensis]
Length = 587
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 93 DELLGSQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 152
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+DL
Sbjct: 153 QTIWNRLHQLKVLKTRRLRSRV-PLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRDL 211
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 212 PRLLAVAESGQQAANVLLSLDETYADVMPVQTS 244
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 239 MPVQTSPSATSAFVSIMRGCDNMCTYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 298
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++E+ ++ S+ S+
Sbjct: 299 LLGQNVNSFRDNSEIQFNNAASTNLSR 325
>gi|195037130|ref|XP_001990018.1| GH19109 [Drosophila grimshawi]
gi|193894214|gb|EDV93080.1| GH19109 [Drosophila grimshawi]
Length = 647
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 117/149 (78%), Gaps = 4/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+V+FEV+GCQMN NDTEVVWSIL +GY + ADV++++TCA+R+ AE K+W RLR
Sbjct: 159 RVHFEVYGCQMNTNDTEVVWSILHENGYQRCEDVASADVVMLVTCAVRDGAEQKIWHRLR 218
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R++K+ + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA+
Sbjct: 219 HLRALKE-RRGTRRHPLQLTLLGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 277
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P +++D
Sbjct: 278 HYGN-SAINVLLSLDETYADVMPVRLNSD 305
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 70/122 (57%), Gaps = 10/122 (8%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN DS +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EVR L + EV
Sbjct: 298 MPVRLNSDSPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLDSIVREVRTLQQQGVKEVT 357
Query: 61 GCQMNVN--------DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
NVN + + +SG+S V P+ L ++ AE R+
Sbjct: 358 LLGQNVNSYRDRSGENNQATTDGNMASGFSTVYKPKTGG--LPFAVLLQSVAEAVPEMRI 415
Query: 113 RF 114
RF
Sbjct: 416 RF 417
>gi|320166116|gb|EFW43015.1| HSPC167 [Capsaspora owczarzaki ATCC 30864]
Length = 712
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 113/148 (76%), Gaps = 3/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FE +GCQMNVNDTE+VWSIL+ G+ + ++ADVIL+MTCAIR+NAE KVW RL
Sbjct: 164 KVFFETYGCQMNVNDTEIVWSILQGVGFERTLDVKQADVILLMTCAIRDNAERKVWSRLN 223
Query: 114 FYRSMKQIHKKHRTFPL-KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ M+ K+ + P+ ++GVLGCMAERLK LLEK+Q +D+VAGPDSY+DLPRLL++
Sbjct: 224 ELKHMRL--KRTKDQPISRVGVLGCMAERLKTQLLEKDQLVDVVAGPDSYRDLPRLLSIA 281
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTD 200
A+NV LSLDETYADI P +S D
Sbjct: 282 NQGDQAVNVQLSLDETYADIAPVRMSKD 309
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+++DSV+AFVSIMRGCDNMC++CIVPFTRGRERSRP+ SI++EVR L+ + EV
Sbjct: 304 VRMSKDSVTAFVSIMRGCDNMCSFCIVPFTRGRERSRPLASIVEEVRQLARQGVREVTLL 363
Query: 63 QMNVN 67
NVN
Sbjct: 364 GQNVN 368
>gi|194044464|ref|XP_001928891.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Sus
scrofa]
Length = 589
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 120/160 (75%), Gaps = 3/160 (1%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ +GY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGKQRKVYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRT-FPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
IRE AE +W+RL +++K K+ R+ PL+IG+LGCMAERLK+ +L +E+ +D++AG
Sbjct: 149 IREKAEQTIWNRLHQLKALKS--KRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAG 206
Query: 159 PDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 207 PDAYRDLPRLLAVAESGQQAANVLLSLDETYADVLPVQTS 246
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 LPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN 67
NVN
Sbjct: 301 LLGQNVN 307
>gi|167533556|ref|XP_001748457.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772976|gb|EDQ86621.1| predicted protein [Monosiga brevicollis MX1]
Length = 1020
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 35 RERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
R R P I DE L KV+ E +GCQMNV+D E+ WSILK++G + + EADV L
Sbjct: 100 RPRDAPYAPI-DEQSLLGRKVHIEAYGCQMNVSDAEIAWSILKNAGCVRCDTAEEADVTL 158
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
++TCAIRENAE K+W RL ++ K+ + R F +IGVLGCMAERLK LLE+E+A+D
Sbjct: 159 LVTCAIRENAENKIWSRLNQLKAHKRRLGRTRNF--QIGVLGCMAERLKHKLLEQEKAID 216
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
LVAGPD+Y+DLPR+L + Q +NVLLSLDETYADITP
Sbjct: 217 LVAGPDAYRDLPRMLMDSAQGQAQVNVLLSLDETYADITP 256
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 57/97 (58%), Gaps = 13/97 (13%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR N +S +AFVSI RGC N C+YCIVPFTRGRERSR +++I++EV LS + EV
Sbjct: 257 VRTNPNSPAAFVSIQRGCANNCSYCIVPFTRGRERSRQIETIVEEVAHLSRQGVKEVTLL 316
Query: 63 QMNVND-----------TEVVWSILKSSGYSKVNHPR 88
NVN E V S+ K G+ + PR
Sbjct: 317 GQNVNSYRDLTGIDDVRNEPVVSMAK--GFGTIYKPR 351
>gi|395509649|ref|XP_003759107.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
[Sarcophilus harrisii]
Length = 593
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVND E+ WSIL+ +GY + N EADVIL++TC+IRE AE +W RL+
Sbjct: 107 KVYLETYGCQMNVNDAEIAWSILEKNGYLRTNSLHEADVILLVTCSIREKAEQAIWHRLK 166
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+S+K K + PL+IG+LGCMAERLK+ +L++EQ +D++AGPDSY+DLPRLL L
Sbjct: 167 RLKSVKARRLKSQV-PLRIGILGCMAERLKEEILQREQLVDIIAGPDSYRDLPRLLTLAD 225
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q + NVLLSL+ETYADI P S +
Sbjct: 226 SGQRSANVLLSLEETYADIMPVQTSPNA 253
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + ++ SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 245 MPVQTSPNATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQGLKEVT 304
Query: 61 GCQMNVN 67
NVN
Sbjct: 305 LLGQNVN 311
>gi|395509651|ref|XP_003759108.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
[Sarcophilus harrisii]
Length = 607
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVND E+ WSIL+ +GY + N EADVIL++TC+IRE AE +W RL+
Sbjct: 107 KVYLETYGCQMNVNDAEIAWSILEKNGYLRTNSLHEADVILLVTCSIREKAEQAIWHRLK 166
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+S+K K + PL+IG+LGCMAERLK+ +L++EQ +D++AGPDSY+DLPRLL L
Sbjct: 167 RLKSVKARRLKSQV-PLRIGILGCMAERLKEEILQREQLVDIIAGPDSYRDLPRLLTLAD 225
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q + NVLLSL+ETYADI P S +
Sbjct: 226 SGQRSANVLLSLEETYADIMPVQTSPNA 253
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 50/57 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF 57
M V+ + ++ SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 245 MPVQTSPNATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVKKLSEQVFL 301
>gi|317418553|emb|CBN80591.1| CDK5 regulatory subunit-associated protein 1 [Dicentrarchus labrax]
Length = 569
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMNVNDT++ WSIL+ GY + READV+L++TC+IRE AE +W+R
Sbjct: 93 SRKVYFETYGCQMNVNDTDIAWSILQRKGYQRTVDLREADVVLLVTCSIREKAEQTIWNR 152
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ ++MK+ K T P+KIG+LGCMAERLK +LE+E+ +D++AGPD+Y+DLPRLL +
Sbjct: 153 LQELKAMKKRRLKTHT-PMKIGILGCMAERLKTEILEREKLVDVLAGPDAYRDLPRLLTV 211
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
Q A NVLLSL+ETYAD+ P + GR +
Sbjct: 212 ADGGQQASNVLLSLEETYADVMPVHHAPQGRSAF 245
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ + +
Sbjct: 243 SAFVSIMRGCDNMCSYCIVPFTRGRERSRPVSSILEEVRMLSEQASYNL 291
>gi|213514974|ref|NP_001134025.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
gi|209156200|gb|ACI34332.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar]
Length = 469
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S V FE +GCQMNVNDTE+ WSIL+ GY + + EADV+L++TC+IRE AE +W+R
Sbjct: 94 SRTVCFETYGCQMNVNDTEIAWSILQKKGYQRTSDVAEADVVLLVTCSIREKAEQTIWNR 153
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
LR +MK+ K R P+KIGVLGCMAERLK LLE+E+ LD++AGPD+Y+DLPRLL++
Sbjct: 154 LRQLTAMKKRRLKTRV-PMKIGVLGCMAERLKSELLEREKLLDVLAGPDAYRDLPRLLSV 212
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q A NVLLSL+ETYAD+ P S G
Sbjct: 213 AHGGQQASNVLLSLEETYADVMPVHHSPQG 242
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V + +SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV LS++ EV
Sbjct: 234 MPVHHSPQGLSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVSSILEEVHILSEQGVKEVT 293
Query: 61 GCQMNVN 67
NVN
Sbjct: 294 MLGQNVN 300
>gi|351708389|gb|EHB11308.1| CDK5 regulatory subunit-associated protein 1 [Heterocephalus
glaber]
Length = 600
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E+ KVY E +GCQMNVNDTE+ WSIL+ SGY + + +EADVIL++TC+IRE E
Sbjct: 94 EELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKPE 153
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +DL+AGPD+Y+DL
Sbjct: 154 QTIWNRLHQLKTLKTKRLRSRV-PLRIGILGCMAERLKEEILSREKMVDLLAGPDAYRDL 212
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 213 PRLLAVVESGQQAANVLLSLDETYADVMPVQTS 245
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LSD+V
Sbjct: 240 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSDQV 294
>gi|47227354|emb|CAF96903.1| unnamed protein product [Tetraodon nigroviridis]
Length = 522
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYFE +GCQMNVNDTE+ WSIL+ GY + +ADV+L++TC+IRE AE +W+RL+
Sbjct: 57 KVYFETYGCQMNVNDTEIAWSILQKKGYQRTFDLSQADVVLLVTCSIREKAEQTIWNRLQ 116
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+MK+ K +T P+KIG+LGCMAERLK LLE+E+ +D++AGPD+Y+DLPRLLA+
Sbjct: 117 QLTAMKRRRLKSQT-PMKIGILGCMAERLKTELLEREKLVDILAGPDAYRDLPRLLAVAD 175
Query: 174 SNQTAINVLLSLDETYADITP 194
Q A NVLLSL+ETYADI P
Sbjct: 176 GGQQASNVLLSLEETYADIMP 196
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V + SA+VSIMRGCDNMCTYCIVPFTRGRERSRP++SIL+EV LSD+ EV
Sbjct: 195 MPVHHAPQAYSAYVSIMRGCDNMCTYCIVPFTRGRERSRPVRSILEEVSQLSDQGVKEVT 254
Query: 61 GCQMNVN 67
NVN
Sbjct: 255 LLGQNVN 261
>gi|348510459|ref|XP_003442763.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Oreochromis niloticus]
Length = 598
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMNVNDTE+ WSIL+ GY + H EADV+L++TC++RE AE +W+R
Sbjct: 93 SRKVYFETYGCQMNVNDTEIAWSILQKKGYQRTAHLSEADVVLLVTCSVREKAEQTIWNR 152
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +MK+ K T P+KIG+LGCMAERLK LL +E+ +D++AGPD+Y+DLPRLLA+
Sbjct: 153 LQQLTAMKRKRLKTHT-PMKIGILGCMAERLKMELLAREKLVDVLAGPDAYRDLPRLLAV 211
Query: 172 TYSNQTAINVLLSLDETYADITP 194
Q NVLLSL+ETYAD+ P
Sbjct: 212 ADGGQQVCNVLLSLEETYADVMP 234
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 47/57 (82%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LSD+ EV NVN
Sbjct: 243 SAFVSIMRGCDNMCSYCIVPFTRGRERSRPVCSILEEVRMLSDQGVKEVTLLGQNVN 299
>gi|355677388|gb|AER95981.1| CDK5 regulatory subunit associated protein 1 [Mustela putorius
furo]
Length = 485
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVNDTE+ WSIL+ SGY + + +EADVIL++TC+IRE AE +W+RL
Sbjct: 1 VYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRLHQ 60
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+ S
Sbjct: 61 LKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVADS 119
Query: 175 NQTAINVLLSLDETYADITPKAVS 198
Q A NVLLSLDETYAD+ P S
Sbjct: 120 GQQAANVLLSLDETYADVMPVQTS 143
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 138 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 197
Query: 61 GCQMNVN 67
NVN
Sbjct: 198 LLGQNVN 204
>gi|307181219|gb|EFN68916.1| CDK5RAP1-like protein [Camponotus floridanus]
Length = 533
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 120/156 (76%), Gaps = 4/156 (2%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+ ++R + KVYFE++GCQMN+ND +++WSILKS GY +AD+IL++TC+IR+NA
Sbjct: 30 VQDIRGENQKVYFEIYGCQMNINDADIIWSILKSHGYKHTQSVDDADIILLVTCSIRDNA 89
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E KVW++L +++ KK+ +KIG+LGCMAERLK +L+K + +D++AGPDSYKD
Sbjct: 90 EQKVWNKLEMLNGIRKKKKKN---SIKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKD 146
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
LPRLLA+T N+TAINV+LS DETYAD+TP + D
Sbjct: 147 LPRLLAVT-DNETAINVVLSFDETYADVTPVRLDQD 181
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL++DSV A+VSIMRGCDNMCTYCIVPFTRGRERSRP+ SILDEVR LSD+ E+
Sbjct: 176 VRLDQDSVGAYVSIMRGCDNMCTYCIVPFTRGRERSRPIASILDEVRQLSDQGVKEITLL 235
Query: 63 QMNVN 67
NVN
Sbjct: 236 GQNVN 240
>gi|357613258|gb|EHJ68404.1| hypothetical protein KGM_07708 [Danaus plexippus]
Length = 491
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN+NDTE+VWSILK G+ K EADV LVMTCAIRE AE K+W RL R K+
Sbjct: 1 MNLNDTEIVWSILKKEGFEKTEVEEEADVFLVMTCAIREGAETKIWHRLDHLRGFKRRRS 60
Query: 124 KHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL 182
+ P+KIG+LGCMAERLK+ L+EKE+A+D+VAGPDSY+DLPRLLA+T S QTA+NVL
Sbjct: 61 LAKNMKPIKIGILGCMAERLKEKLIEKEKAVDVVAGPDSYRDLPRLLAVTESGQTAVNVL 120
Query: 183 LSLDETYADITP 194
LSLDETYAD+ P
Sbjct: 121 LSLDETYADVVP 132
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN+ SVSAF+SIMRGCDNMCTYCIVPFTRGRERSRP+ SI+DEV+ LS+ EV
Sbjct: 133 VRLNKGSVSAFISIMRGCDNMCTYCIVPFTRGRERSRPISSIVDEVKHLSESGVKEVTLL 192
Query: 63 QMNVN 67
NVN
Sbjct: 193 GQNVN 197
>gi|4929773|gb|AAD34147.1|AF152097_1 CGI-05 protein [Homo sapiens]
Length = 554
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 116/162 (71%), Gaps = 2/162 (1%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + R ADVIL++TC+
Sbjct: 48 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRPVTSR-ADVILLVTCS 106
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 107 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 165
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 166 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 207
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 199 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPPR 258
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 259 PPKVLGLQ 266
>gi|410920611|ref|XP_003973777.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Takifugu rubripes]
Length = 597
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVYFE +GCQMNVNDTE+ WSIL+ GY + +ADV+L++TC+IRE AE +W+RL+
Sbjct: 95 KVYFETYGCQMNVNDTEIAWSILQKKGYQRTLELSQADVVLLVTCSIREKAEQTIWNRLQ 154
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+MK+ K ++ P+KIG+LGCMAERLK +LE+E+ +D++AGPD+Y+DLPRLLA+
Sbjct: 155 QLTAMKKKRLKSQS-PMKIGILGCMAERLKTEVLEREKLVDILAGPDAYRDLPRLLAVAD 213
Query: 174 SNQTAINVLLSLDETYADITP 194
Q A NVLLSL+ETYADI P
Sbjct: 214 GGQQASNVLLSLEETYADIMP 234
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V SA+VSIMRGCDNMCTYCIVPFTRGRERSRP+ S+L+EVR LSD+ EV
Sbjct: 233 MPVHHAPQGYSAYVSIMRGCDNMCTYCIVPFTRGRERSRPVGSVLEEVRMLSDQGVKEVT 292
Query: 61 GCQMNVN 67
NVN
Sbjct: 293 LLGQNVN 299
>gi|160333602|ref|NP_001103849.1| CDK5 regulatory subunit-associated protein 1 [Danio rerio]
gi|159155698|gb|AAI54732.1| Zgc:162738 protein [Danio rerio]
Length = 577
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMN NDTE+ WSIL+ +GYS+ ++ADV+L++TC+IRE AE +W+R
Sbjct: 89 SRKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNR 148
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ + K+ +KH+ L IGVLGCMAERLK LL++E+ +D++AGPD+Y+DLPRLL+L
Sbjct: 149 LKHLTASKKRIQKHKR-SLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSL 207
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q A NVLLSL+ETYAD+ P + +G
Sbjct: 208 AHGGQRASNVLLSLEETYADVIPVHQTLEG 237
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 47/57 (82%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIMRGCDNMC+YCIVPFTRGRERSRPM SI++EVR LSD+ E+ NVN
Sbjct: 239 SAFVSIMRGCDNMCSYCIVPFTRGRERSRPMSSIVEEVRMLSDQGVKEITLLGQNVN 295
>gi|115313109|gb|AAI24421.1| Zgc:162738 protein [Danio rerio]
Length = 555
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 116/154 (75%), Gaps = 1/154 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMN NDTE+ WSIL+ +GYS+ ++ADV+L++TC+IRE AE +W+R
Sbjct: 67 SRKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNR 126
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ + K+ +KH+ L IGVLGCMAERLK LL++E+ +D++AGPD+Y+DLPRLL+L
Sbjct: 127 LKHLTASKKRIQKHKR-SLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSL 185
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
+ Q A NVLLSL+ETYAD+ P + +G +
Sbjct: 186 AHGGQRASNVLLSLEETYADVIPVHQTLEGHSAF 219
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 47/57 (82%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIMRGCDNMC+YCIVPFTRGRERSRPM SI++EVR LSD+ E+ NVN
Sbjct: 217 SAFVSIMRGCDNMCSYCIVPFTRGRERSRPMSSIVEEVRMLSDQGVKEITLLGQNVN 273
>gi|334310918|ref|XP_001381790.2| PREDICTED: CDK5 regulatory subunit-associated protein 1
[Monodelphis domestica]
Length = 590
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVND E+ W+IL+ SGY + N EADVIL++TC+IRE AE +W+RL+
Sbjct: 104 KVYLETYGCQMNVNDAEIAWAILQKSGYLRTNTLHEADVILLVTCSIREKAEQAIWNRLK 163
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K + PL+IG+LGCMAERLK+ +L +E+ +D+VAGPD+Y+DLPRLL+L
Sbjct: 164 RLKFIK-ARRLRSQVPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLSLAD 222
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q + NVLLSL+ETYADI P S++
Sbjct: 223 SGQRSANVLLSLEETYADIMPVQTSSNA 250
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + ++ SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS + EV
Sbjct: 242 MPVQTSSNATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSQQGLKEVT 301
Query: 61 GCQMNVN 67
NVN
Sbjct: 302 LLGQNVN 308
>gi|332019786|gb|EGI60247.1| CDK5RAP1-like protein [Acromyrmex echinatior]
Length = 544
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 4/154 (2%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGK 107
+R + KVYFE+FGCQMNVND ++VWSILKS GY +AD++L++TC+IR+NAE K
Sbjct: 53 IRGENQKVYFEIFGCQMNVNDADIVWSILKSHGYKHTECLDDADIVLLVTCSIRDNAEQK 112
Query: 108 VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167
VW +L ++ K+ P+KI GCMAERLK +L++ + +D++AGPDSYKDLPR
Sbjct: 113 VWHKLENLNGVRNKKKRTTKLPMKI---GCMAERLKTKILDRGKLVDVIAGPDSYKDLPR 169
Query: 168 LLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LLA+T ++TAINVLLS DETYAD+TP ++ D
Sbjct: 170 LLAVT-DDETAINVLLSFDETYADVTPVRLNQDS 202
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN+DS A+VSIMRGCDNMCTYCIVPFTRGRERSRP+ SILDEVR LSD+ E+
Sbjct: 196 VRLNQDSTEAYVSIMRGCDNMCTYCIVPFTRGRERSRPIASILDEVRQLSDQGVKEITLL 255
Query: 63 QMNVN 67
NVN
Sbjct: 256 GQNVN 260
>gi|148235437|ref|NP_001090499.1| CDK5 regulatory subunit associated protein 1 [Xenopus laevis]
gi|116063382|gb|AAI23345.1| MGC154823 protein [Xenopus laevis]
Length = 565
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
++K+Y E +GCQMNVNDTE+ WSIL+ +GY + + EADVI ++TC++RE AE +W+R
Sbjct: 80 NNKIYLETYGCQMNVNDTEIAWSILQQNGYVRTHIETEADVIFLVTCSVREKAEQTIWNR 139
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ + ++K+ K+ + ++IG+LGCMAERLK+ +LE+E +D+VAGPD+Y+DLPRLLA+
Sbjct: 140 LQQFATLKR--KRSKDNRMRIGILGCMAERLKQEILERENLVDIVAGPDAYRDLPRLLAV 197
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
S Q NVLLS+DETYADI P S + +
Sbjct: 198 AESGQQVANVLLSVDETYADIMPVHTSASSKSAF 231
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V + S SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI++EVR LS + EV
Sbjct: 219 MPVHTSASSKSAFVSIMRGCDNMCTYCIVPFTRGRERSRPLHSIIEEVRMLSSQGVKEVT 278
Query: 61 GCQMNVN 67
NVN
Sbjct: 279 LLGQNVN 285
>gi|62857473|ref|NP_001017192.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
tropicalis]
Length = 569
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
++K+Y E +GCQMNVNDTE+ WSIL+ +GY + EADVIL++TC++RE AE +W+R
Sbjct: 80 NNKIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNR 139
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ ++K+ K+ +T ++IG+LGCMAERLK+ +L+KE +DLVAGPD+Y+DLPRLL++
Sbjct: 140 LQQLAALKR--KRSKTSRMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSV 197
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
+ Q NVLLS+DETYADI P S + +
Sbjct: 198 AETGQQVANVLLSVDETYADIMPVHTSASSKSAF 231
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 51/67 (76%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V + S SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+QSIL+EVR LS + EV
Sbjct: 219 MPVHTSASSKSAFVSIMRGCDNMCTYCIVPFTRGRERSRPLQSILEEVRMLSSQGVKEVT 278
Query: 61 GCQMNVN 67
NVN
Sbjct: 279 LLGQNVN 285
>gi|89272073|emb|CAJ81315.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana)
tropicalis]
Length = 625
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
++K+Y E +GCQMNVNDTE+ WSIL+ +GY + EADVIL++TC++RE AE +W+R
Sbjct: 136 NNKIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNR 195
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ ++K+ K+ +T ++IG+LGCMAERLK+ +L+KE +DLVAGPD+Y+DLPRLL++
Sbjct: 196 LQQLAALKR--KRSKTSRMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSV 253
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
+ Q NVLLS+DETYADI P S + +
Sbjct: 254 AETGQQVANVLLSVDETYADIMPVHTSASSKSAF 287
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 51/67 (76%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V + S SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+QSIL+EVR LS + EV
Sbjct: 275 MPVHTSASSKSAFVSIMRGCDNMCTYCIVPFTRGRERSRPLQSILEEVRMLSSQGVKEVT 334
Query: 61 GCQMNVN 67
NVN
Sbjct: 335 LLGQNVN 341
>gi|198415552|ref|XP_002127642.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1
[Ciona intestinalis]
Length = 618
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VYFE++GCQMNVND E W+ILK +GY K ADVI+++TC+IRE AE K+W+RL+
Sbjct: 119 VYFEMYGCQMNVNDGEYAWAILKKAGYKKTTDINTADVIMLVTCSIREKAEDKIWNRLKQ 178
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTY 173
++ KQ + H KIG+LGCMAERLKK ++EKE+A+D+VAGPD+Y+DLPRLL T
Sbjct: 179 LKTHKQNY--HTPGYPKIGILGCMAERLKKKIVEKEKAVDIVAGPDAYRDLPRLLEQATT 236
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
+ TAIN +LS+DETYADI P D + +
Sbjct: 237 DSTTAINTMLSVDETYADIMPVRFDQDSKTAF 268
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VR ++DS +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+E+R LSD+ +V
Sbjct: 256 MPVRFDQDSKTAFVSIMRGCDNMCSYCIVPFTRGRERSRPVTSILEEIRILSDQGIKQVN 315
Query: 61 GCQMNVN 67
NVN
Sbjct: 316 LLGQNVN 322
>gi|322795992|gb|EFZ18616.1| hypothetical protein SINV_04486 [Solenopsis invicta]
Length = 503
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VYF+++GCQMN ND +++WS+LKS GY + +AD++L++TCAIR+NAE K+W++L
Sbjct: 125 VYFKIYGCQMNENDADIIWSVLKSHGYKHTQYLEDADIVLLITCAIRDNAEQKIWNKLEN 184
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
++ K+ +KIG+LGCMAERLK +L++ + +D++AGPDSYKDLPRLLA+T
Sbjct: 185 LNGIRNKIKRITGRSMKIGLLGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLLAVT-D 243
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
N+TAINV+LS DETYAD+TP ++ D
Sbjct: 244 NETAINVVLSFDETYADVTPIRLNQDS 270
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN+DS A+VSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL+EVR LSD+ E+
Sbjct: 264 IRLNQDSTGAYVSIMRGCDNMCTYCIVPFTRGRERSRPVASILEEVRQLSDQGVKEITLL 323
Query: 63 QMNVN 67
NVN
Sbjct: 324 GQNVN 328
>gi|449486393|ref|XP_002192492.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Taeniopygia guttata]
Length = 566
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMNV+DTE+VW+IL+ +GY++ EADV+L++TC++RE AE VW+R
Sbjct: 78 APKVYLETYGCQMNVSDTEIVWAILQKNGYARTKELEEADVVLLVTCSVREKAEHAVWNR 137
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
LR R++K + R L++G+LGCMAERLK+ +L KE+ +D+VAGPD+Y+DLPRLLA+
Sbjct: 138 LRHLRALKARRPRARAP-LRVGILGCMAERLKEEILHKEKLVDVVAGPDAYRDLPRLLAV 196
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
S Q A NVLLSLDETYADI P S G
Sbjct: 197 AESGQQAANVLLSLDETYADILPVQTSAGG 226
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL EVR LSD+ EV
Sbjct: 218 LPVQTSAGGTTAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILQEVRMLSDQGVKEVT 277
Query: 61 GCQMNVND----TEVVWSILKSSGYSK 83
NVN +EV + + + G S+
Sbjct: 278 LLGQNVNSFRDLSEVQFQSVTAPGLSR 304
>gi|327289365|ref|XP_003229395.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
[Anolis carolinensis]
Length = 591
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVNDTE+ WSIL+ SGY + EADVIL++TC+IRE AE +W+RL+
Sbjct: 105 KVYLETYGCQMNVNDTEIAWSILQRSGYQRTTRLEEADVILLVTCSIREKAEQTIWNRLK 164
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K + L+IG+LGCMAERLK+ +L++E+ +D+VAGPDSY+DLPRLL +
Sbjct: 165 HLKTLKLKRPASQG-ALRIGILGCMAERLKEKILDRERLVDVVAGPDSYRDLPRLLTVAE 223
Query: 174 SNQTAINVLLSLDETYADITP 194
S Q A NVLLSL+ETYADI P
Sbjct: 224 SGQQAANVLLSLEETYADILP 244
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 8/100 (8%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ N S SAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL EV+ LSD+ EV
Sbjct: 243 LPVQTNPSSTSAFVSIMRGCDNMCTYCIVPFTRGRERSRPIVSILQEVQMLSDQGVKEVT 302
Query: 61 GCQMNVNDTEVVWSI--LKSS------GYSKVNHPREADV 92
NVN V + L S+ G+S V P++ +
Sbjct: 303 LLGQNVNSYRDVSEVQFLSSAPSHLSRGFSTVYRPKQGGL 342
>gi|383851609|ref|XP_003701324.1| PREDICTED: CDK5RAP1-like protein-like [Megachile rotundata]
Length = 591
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 114/141 (80%), Gaps = 4/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+YFEV+GCQMNVNDTE++WS+LKS GY KV EA++IL++TC+IR+NAE ++W++L+
Sbjct: 105 KIYFEVYGCQMNVNDTEIIWSVLKSHGYRKVEKLEEANIILLITCSIRDNAEQRIWNKLQ 164
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +++ K KIG+LGCMAERLK +LE+ + +D++AGPDSYKDLPRLL+ T
Sbjct: 165 YLNGLRRKKLKSLK---KIGLLGCMAERLKDKILERGKLVDIIAGPDSYKDLPRLLS-TV 220
Query: 174 SNQTAINVLLSLDETYADITP 194
N+TAINV+LS DETYAD+TP
Sbjct: 221 ENETAINVVLSFDETYADVTP 241
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ +S AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+ALSD+ EV
Sbjct: 242 VRLDPESTKAFVSIMRGCDNMCTYCIVPFTRGRERSRPIDSIIKEVQALSDEGVKEVTLL 301
Query: 63 QMNVN 67
NVN
Sbjct: 302 GQNVN 306
>gi|168008611|ref|XP_001757000.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691871|gb|EDQ78231.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 523
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y E +GCQMNVND E+V +I+K SGY++ V P E+D+I + TCAIRENAE K+W RL
Sbjct: 31 KLYVETYGCQMNVNDMEIVLAIMKDSGYTEIVQTPEESDIIFINTCAIRENAEHKIWHRL 90
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+++ +K P K+ VLGCMAERLK+ L+ ++ +D+V GPD+Y+DLPRLL+L
Sbjct: 91 NYFKHLKS-RATRPAKPPKVAVLGCMAERLKEKLIVADKMVDVVCGPDAYRDLPRLLSLV 149
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTD 200
QT IN LLSL+ETYAD++P ++ +
Sbjct: 150 DEGQTGINTLLSLEETYADVSPVRIAKN 177
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+ ++SV+AFVS+MRGC+NMC++CIVPFTRGRERSRP+ SI EV L ++ EV
Sbjct: 172 VRIAKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVSSIAREVSELWEQGVKEVILL 231
Query: 63 QMNVN 67
NVN
Sbjct: 232 GQNVN 236
>gi|395830333|ref|XP_003788286.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Otolemur
garnettii]
Length = 540
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 110/161 (68%), Gaps = 3/161 (1%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTC- 98
P +DE+ KVYFE +GCQMNVNDTE+ WSIL+ SGY + ++ +E L C
Sbjct: 88 PPYLTVDELLGRQRKVYFETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEVHFWLNFACF 147
Query: 99 -AIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
RE AE +W+RL +++K + R PLKIG+LGCMAERLK+ +L +E+ +DL+A
Sbjct: 148 DLCREKAEQTIWNRLLQLKALKTRRLRSRV-PLKIGILGCMAERLKEEILNREKMVDLLA 206
Query: 158 GPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
GPD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 207 GPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 247
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 242 MPVQTSPSVTSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 301
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ SS S+
Sbjct: 302 LLGQNVNSFRDNSEVQFNNAVSSNLSR 328
>gi|326430372|gb|EGD75942.1| CDK5 regulatory subunit-associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 632
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 105/141 (74%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+V + +GCQMNVND+E+ WSILK +G K EAD++L++TCAIRENAE KVW +L
Sbjct: 124 RVLIQTYGCQMNVNDSELAWSILKEAGCEKATDVEEADIVLLVTCAIRENAETKVWTKLD 183
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ KH+ L+IGVLGCMAERLK L+E+ + +D+VAGPD+Y++LP +L+
Sbjct: 184 QLSHIKRKRPKHKD--LQIGVLGCMAERLKHKLVEESKCVDIVAGPDAYRELPTMLSRAA 241
Query: 174 SNQTAINVLLSLDETYADITP 194
+ T +NVLLSL+ETYAD+TP
Sbjct: 242 AGDTQVNVLLSLEETYADLTP 262
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 56/85 (65%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR N +S SAFVSI RGCDNMC+YCIVPFTRGRERSRP+ +IL EV+ LS++ EV
Sbjct: 263 VRHNPNSPSAFVSIQRGCDNMCSYCIVPFTRGRERSRPVSAILREVQQLSEQGVKEVTLL 322
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHP 87
NVN I ++ VN P
Sbjct: 323 GQNVNSYLDHSQISVATAAPVVNTP 347
>gi|268317612|ref|YP_003291331.1| MiaB family RNA modification protein [Rhodothermus marinus DSM
4252]
gi|262335146|gb|ACY48943.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM
4252]
Length = 482
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 5/149 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNV+D+E+V +IL++ GY P +ADV+L+ TCAIRENAE KV RL
Sbjct: 28 KVYIETYGCQMNVSDSEIVAAILRAHGYGLTRDPEQADVVLLNTCAIRENAEQKVRHRLD 87
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALT 172
+R+ HK+ + L+IGVLGCMAERL+ LLE+EQ +DLV GPD+Y+DLPRLL
Sbjct: 88 IFRA----HKRKQRPGLRIGVLGCMAERLRHKLLEEEQLVDLVVGPDAYRDLPRLLEEAE 143
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q A+NV LS +ETYADI P ++G
Sbjct: 144 TTGQAAVNVQLSREETYADIAPVRYDSNG 172
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + V+A+VSIMRGCDNMC +C+VPFTRGRERSRP+QSILDE L ++ Y EV
Sbjct: 166 VRYDSNGVTAYVSIMRGCDNMCAFCVVPFTRGRERSRPVQSILDECARLVEEGYREVTVL 225
Query: 63 QMNVN 67
NVN
Sbjct: 226 GQNVN 230
>gi|345302673|ref|YP_004824575.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Rhodothermus marinus SG0.5JP17-172]
gi|345111906|gb|AEN72738.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Rhodothermus marinus SG0.5JP17-172]
Length = 482
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 5/149 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNV+D+E+V +IL++ GY P +ADV+L+ TCAIRENAE KV RL
Sbjct: 28 KVYIETYGCQMNVSDSEIVAAILRAHGYGLTRDPEQADVVLLNTCAIRENAEQKVRHRLD 87
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALT 172
+R+ HK+ + L+IGVLGCMAERL+ LLE+EQ +DLV GPD+Y+DLPRLL
Sbjct: 88 IFRA----HKRKQRPGLRIGVLGCMAERLRHKLLEEEQLVDLVVGPDAYRDLPRLLEEAE 143
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q A+NV LS +ETYADI P ++G
Sbjct: 144 TTGQAAVNVQLSREETYADIAPVRYDSNG 172
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + V+A+VSIMRGCDNMC +C+VPFTRGRERSRP+QSILDE L ++ Y EV
Sbjct: 166 VRYDSNGVTAYVSIMRGCDNMCAFCVVPFTRGRERSRPVQSILDECARLVEEGYREVTVL 225
Query: 63 QMNVN 67
NVN
Sbjct: 226 GQNVN 230
>gi|330803397|ref|XP_003289693.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
gi|325080203|gb|EGC33768.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum]
Length = 538
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
+QS + VY E +GCQMN DTEV+ SILK+SGY ++ +EAD++ + TCAI
Sbjct: 36 LQSTIMNETGEGKNVYIETYGCQMNFADTEVINSILKTSGYKIIDTLKEADIVFLNTCAI 95
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RENAE K+W RL RS K+ K++ T I V+GCMAERLK+ LLE E +D+V GPD
Sbjct: 96 RENAESKIWLRLSELRSKKRKEKRNIT----IAVIGCMAERLKEKLLESEHRVDIVVGPD 151
Query: 161 SYKDLPRLLALTY--SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+Y+ LP LLA QTAINV+LS DETYADITP ++D S YV
Sbjct: 152 AYRSLPSLLAKIQDGEQQTAINVMLSADETYADITP-VRTSDNMVSAYV 199
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR +++ VSA+VSIMRGC+NMC+YCIVPFTRGRERSRP++SIL+EVR LS++ Y E+
Sbjct: 188 VRTSDNMVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPVESILNEVRQLSEQGYKEITLL 247
Query: 63 QMNVNDTEVV 72
NVN V
Sbjct: 248 GQNVNSYNFV 257
>gi|325183820|emb|CCA18278.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
laibachii Nc14]
gi|325183990|emb|CCA18448.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo
laibachii Nc14]
Length = 639
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 109/175 (62%), Gaps = 20/175 (11%)
Query: 40 PMQSILDEVRAL-----------------SDKVYFEVFGCQMNVNDTEVVWSILKSSGYS 82
P +SI++E A+ + Y E +GCQMN D+E+V +IL +GY
Sbjct: 65 PQESIINETSAMNFPSNLADMDGNEEQTQTKNFYIETYGCQMNTADSEIVHAILVKNGYQ 124
Query: 83 KVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQI---HKKHRTFPLKIGVLGCMA 139
+P +ADVIL+ TCAIRENAE K+W+RL +R +K HK R +GVLGCMA
Sbjct: 125 LAKNPEDADVILLNTCAIRENAESKIWNRLEQWRQIKVKLLRHKSTRNHLPTVGVLGCMA 184
Query: 140 ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
ERLK LLE ++ +DLV GPD+Y+DLP LL + Q+A+NV LSLDETYA I P
Sbjct: 185 ERLKTKLLECDKMVDLVVGPDAYRDLPNLLQVVRGGQSAVNVQLSLDETYAGIVP 239
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + SAFVSIMRGC+NMC+YCIVPFTRGRERS ++SI+ EV++L D+ E+
Sbjct: 240 VRSDPSNPSAFVSIMRGCNNMCSYCIVPFTRGRERSCELESIISEVKSLRDQGVKEIMLL 299
Query: 63 QMNVN 67
NVN
Sbjct: 300 GQNVN 304
>gi|303288614|ref|XP_003063595.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454663|gb|EEH51968.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 548
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 112/154 (72%), Gaps = 5/154 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVND+EV+ S+L +GY + +ADVIL+ TCAIR+ AE K+W RL +
Sbjct: 92 VYTETYGCQMNVNDSEVMLSVLADNGYDTTDDVHDADVILINTCAIRDKAEAKIWQRLAY 151
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALTY 173
++S+++ KK+ P+ +GVLGCMAERLK LLE +Q DLVAGPD+Y+DLP L+ A+
Sbjct: 152 FKSLRRRRKKNEK-PV-VGVLGCMAERLKTQLLEADQLADLVAGPDAYRDLPNLISAVNS 209
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
S + A+NV LS++ETYADI P V +G + +V
Sbjct: 210 SGEKAMNVQLSVEETYADIVP--VRKEGAHAAFV 241
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +AFV+IMRGCDN C++CIVP+TRGRERSR SI EVR LS++ EV NV
Sbjct: 234 EGAHAAFVTIMRGCDNACSFCIVPYTRGRERSRDPASIEYEVRLLSEQGVKEVTLLGQNV 293
Query: 67 N 67
N
Sbjct: 294 N 294
>gi|440793540|gb|ELR14719.1| CDK5 regulatory subunit associated protein 1, putative
[Acanthamoeba castellanii str. Neff]
Length = 565
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 3/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ E +GCQMN +D+E+V SI++ +GY + +AD+I V TCAIR+NAE KVWDRL
Sbjct: 69 KVFMETYGCQMNSSDSEIVMSIMQKAGYEETAALDDADIIFVNTCAIRDNAERKVWDRLN 128
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++MK+ +K+ + +GVLGCMAERLK LLE ++ +DLV GPD+Y+ LP LL
Sbjct: 129 HFKNMKRANKQSKRV---VGVLGCMAERLKSRLLESDKLVDLVVGPDAYRSLPSLLTEVE 185
Query: 174 SNQTAINVLLSLDETYADITP 194
S QTA+NV LS++ETYADI P
Sbjct: 186 SGQTAMNVQLSMEETYADIRP 206
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR +++SA++SIMRGC+NMC+YCIVPFTRGRERSRP+ SILDEVR LSD+ EV
Sbjct: 207 VRTTSNNLSAYLSIMRGCNNMCSYCIVPFTRGRERSRPIASILDEVRQLSDQGVKEVVLL 266
Query: 63 QMNVN 67
NVN
Sbjct: 267 GQNVN 271
>gi|254495105|ref|ZP_05108029.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
gi|85819455|gb|EAQ40612.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152]
Length = 484
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 109/150 (72%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMN+ND+E+V +IL GY+ EAD++LV TC+IRE AE V R
Sbjct: 26 TKKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETTVRRR 85
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ Y ++KQ++KK +K+GVLGCMAERLK+ LE+E+ +DLV GPD+YKDLP LL
Sbjct: 86 LQKYNAVKQVNKK-----MKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLEE 140
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
Y + A+NV+LS +ETY DI+P ++++G
Sbjct: 141 VYEGRDAVNVILSKEETYGDISPVRLNSNG 170
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSI RGCDNMCT+C+VPFTRGRERSR +SIL+E++ + DK Y E+
Sbjct: 164 VRLNSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPKSILEEIQQMVDKNYKEITLL 223
Query: 63 QMNVN 67
NV+
Sbjct: 224 GQNVD 228
>gi|312129884|ref|YP_003997224.1| tRNA-i(6)a37 thiotransferase enzyme miab [Leadbetterella byssophila
DSM 17132]
gi|311906430|gb|ADQ16871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leadbetterella byssophila
DSM 17132]
Length = 464
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 109/157 (69%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
++E + + K+Y E +GCQMN D+EVV SIL+S+GYS + EAD+IL+ TCAIR+NA
Sbjct: 17 VNEFVSGTKKLYIESYGCQMNFADSEVVASILRSNGYSTTSDVVEADLILLNTCAIRDNA 76
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E +V +RL S K+ R LKIGVLGCMAERLK LE+E+ +DLV GPD+Y+D
Sbjct: 77 EQRVRNRLSILNSNKK-----RNPELKIGVLGCMAERLKTKFLEEEKMVDLVVGPDAYRD 131
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP LLA A+NV LS +ETYADITP + ++G
Sbjct: 132 LPNLLAEVEEGHKAVNVFLSREETYADITPIRLDSNG 168
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ + VSAF+SIMRGC+NMC++C+VPFTRGRERSR SI E + L D+ Y EV
Sbjct: 162 IRLDSNGVSAFISIMRGCNNMCSFCVVPFTRGRERSRDPYSIEKEAKELFDQGYREVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|324508033|gb|ADY43398.1| CDK5RAP1-like protein [Ascaris suum]
Length = 584
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 107/141 (75%), Gaps = 7/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV F +GCQMNVND E V SIL ++ Y +V+ R+ADV+L+MTC+IRE AE KVW R
Sbjct: 95 KVKFITYGCQMNVNDMETVRSILFANKYLEVDDERKADVVLLMTCSIREGAEEKVW---R 151
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +++ K +T +GVLGCMAER++ LL++ A+D+VAGPDSY+DLPRLLA+T
Sbjct: 152 VLKKLRRSANKQQT----VGVLGCMAERVRHKLLQEANAVDVVAGPDSYRDLPRLLAVTR 207
Query: 174 SNQTAINVLLSLDETYADITP 194
+ ++AINV LSL+ETYAD+TP
Sbjct: 208 TGRSAINVQLSLEETYADVTP 228
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + SAFVSIMRGCDNMCTYCIVPFTRGRERSRP++SI+DEV+ LS + Y +V
Sbjct: 229 VRLDPMAKSAFVSIMRGCDNMCTYCIVPFTRGRERSRPLRSIVDEVKRLSYQGYKQVVLL 288
Query: 63 QMNVN 67
NVN
Sbjct: 289 GQNVN 293
>gi|298712341|emb|CBJ33133.1| n/a [Ectocarpus siliculosus]
Length = 442
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 107/157 (68%), Gaps = 19/157 (12%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ E +GCQMNV+DTEVV +IL +G+S+ + EA V+L TCAIRE AEGKVWDRL+F+
Sbjct: 151 FIETYGCQMNVSDTEVVRAILLKAGFSEADTLEEAGVVLANTCAIRERAEGKVWDRLKFF 210
Query: 116 RSMK--------QIHKKHRTFP-----LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
S++ K + P LKIGVLGCMAERLK+SLLE+ +DLV GPD+Y
Sbjct: 211 SSIRRRRKLAATHAAKARQPVPGGLSDLKIGVLGCMAERLKESLLER-GGVDLVTGPDAY 269
Query: 163 KDLPRLLALTYSNQT-----AINVLLSLDETYADITP 194
+DLPRLL L ++ + A+NV LS DETYADI P
Sbjct: 270 RDLPRLLELVGTSGSGESTGAVNVQLSQDETYADIAP 306
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
V ++VSAF+SIMRGC+NMCTYCIVPFTRGRERSRP+ SI+DE L D EV
Sbjct: 310 VNNTSEAVSAFISIMRGCNNMCTYCIVPFTRGRERSRPLGSIVDEAMRLRDDGVREVTLL 369
Query: 63 QMNVN 67
NVN
Sbjct: 370 GQNVN 374
>gi|88801432|ref|ZP_01116960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
23-P]
gi|88782090|gb|EAR13267.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii
23-P]
Length = 484
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 109/150 (72%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMN+ND+E+V +IL GY+ EAD++LV TC+IRE AE V R
Sbjct: 26 TKKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETSVRKR 85
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ Y ++K+I+ K +K+GVLGCMAERLK+ LE+E+ +DLV GPD+YKDLP LL+
Sbjct: 86 LQKYNAVKKINPK-----MKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLSE 140
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
++A+NV+LS DETY DI+P ++T+G
Sbjct: 141 VSEGRSAVNVILSKDETYGDISPVRLNTNG 170
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR +SIL+E++++ D+ + E+
Sbjct: 164 VRLNTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPKSILEEIQSMVDQNFKEITLL 223
Query: 63 QMNVN 67
NV+
Sbjct: 224 GQNVD 228
>gi|115486105|ref|NP_001068196.1| Os11g0592800 [Oryza sativa Japonica Group]
gi|110832794|sp|Q2R1U4.1|CK5P1_ORYSJ RecName: Full=CDK5RAP1-like protein
gi|77551766|gb|ABA94563.1| CDK5RAP1, putative, expressed [Oryza sativa Japonica Group]
gi|113645418|dbj|BAF28559.1| Os11g0592800 [Oryza sativa Japonica Group]
gi|215694718|dbj|BAG89909.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616254|gb|EEE52386.1| hypothetical protein OsJ_34478 [Oryza sativa Japonica Group]
Length = 600
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 8/161 (4%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEG 106
V A ++Y E +GCQMNVND E+V SI+K+ GY + V P A++I + TCAIR+NAE
Sbjct: 88 VTASKGRIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQ 147
Query: 107 KVWDRLRFYRSMKQIHK------KHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
KVW RL ++ +K+ K + R+ P KI VLGCMAERLK+ +L+ ++ +D+V GP
Sbjct: 148 KVWQRLNYFWFLKRQWKANVAAGRSRSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
D+Y+DLPRLL Q IN LLSL+ETYADITP +S +
Sbjct: 208 DAYRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDN 248
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L EV
Sbjct: 243 VRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVMLL 302
Query: 63 QMNVN 67
NVN
Sbjct: 303 GQNVN 307
>gi|224094881|ref|XP_002310277.1| predicted protein [Populus trichocarpa]
gi|222853180|gb|EEE90727.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 8/155 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMNVND E+V SI+K++GYS+ V+ P A++I + TCAIR+NAE KVW RL
Sbjct: 115 RIYHETYGCQMNVNDMEIVLSIMKNAGYSEIVDVPESAEIIFINTCAIRDNAEQKVWQRL 174
Query: 113 RFYRSMKQ-------IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ I + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y+DL
Sbjct: 175 NYFWFLKRHWKSNVAIGRSQSHHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 234
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
PRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 235 PRLLEEVEYGQKGINTLLSLEETYADISPVRISKN 269
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S++AFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 264 VRISKNSINAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLL 323
Query: 63 QMNVN 67
NVN
Sbjct: 324 GQNVN 328
>gi|30690642|ref|NP_195357.2| Methylthiotransferase [Arabidopsis thaliana]
gi|32129440|sp|Q8H0V1.1|CK5P1_ARATH RecName: Full=CDK5RAP1-like protein
gi|25083016|gb|AAN72033.1| putative protein [Arabidopsis thaliana]
gi|30725464|gb|AAP37754.1| At4g36390 [Arabidopsis thaliana]
gi|332661250|gb|AEE86650.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 640
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCAI 100
+S LD A ++Y E +GCQMN+ND E+V +I+K+SGY +V P A+VI V TCAI
Sbjct: 118 ESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAI 177
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQAL 153
RENAE +VW RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++ +
Sbjct: 178 RENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMV 237
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 238 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN 284
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++E+S++AFVS+MRGC+NMC +CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 279 VRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLL 338
Query: 63 QMNVN 67
NVN
Sbjct: 339 GQNVN 343
>gi|4006921|emb|CAB16849.1| putative protein [Arabidopsis thaliana]
gi|7270587|emb|CAB80305.1| putative protein [Arabidopsis thaliana]
Length = 587
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 112/168 (66%), Gaps = 8/168 (4%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCA 99
++S LD A ++Y E +GCQMN+ND E+V +I+K+SGY +V P A+VI V TCA
Sbjct: 64 LRSTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCA 123
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQA 152
IRENAE +VW RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++
Sbjct: 124 IRENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKM 183
Query: 153 LDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
+D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 184 VDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN 231
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++E+S++AFVS+MRGC+NMC +CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 226 VRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLL 285
Query: 63 QMNVN 67
NVN
Sbjct: 286 GQNVN 290
>gi|449533478|ref|XP_004173701.1| PREDICTED: CDK5RAP1-like protein-like, partial [Cucumis sativus]
Length = 288
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVW 109
LS +VY E +GCQMN+ND EVV SI+K +GYS+ V+ P A++I + TCAIR+NAE KVW
Sbjct: 126 LSGRVYHETYGCQMNINDMEVVLSIMKKAGYSETVDTPETAEIIFINTCAIRDNAEQKVW 185
Query: 110 DRLRFYRSMKQIHKKHRT-------FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y
Sbjct: 186 QRLNYFWFLKRNWKSNVATGRSQSRHPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAY 245
Query: 163 KDLPRLLALTYSNQTAINVLLSLDETYADITP 194
+DLPRLL Q IN LLSL+ETYADI+P
Sbjct: 246 RDLPRLLDEVDYGQKGINTLLSLEETYADISP 277
>gi|449444679|ref|XP_004140101.1| PREDICTED: CDK5RAP1-like protein-like [Cucumis sativus]
Length = 635
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 8/158 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVW 109
LS +VY E +GCQMN+ND EVV SI+K +GYS+ V+ P A++I + TCAIR+NAE KVW
Sbjct: 126 LSGRVYHETYGCQMNINDMEVVLSIMKKAGYSETVDTPETAEIIFINTCAIRDNAEQKVW 185
Query: 110 DRLRFYRSMKQIHKKHRT-------FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y
Sbjct: 186 QRLNYFWFLKRNWKSNVATGRSQSRHPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAY 245
Query: 163 KDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
+DLPRLL Q IN LLSL+ETYADI+P ++ +
Sbjct: 246 RDLPRLLDEVDYGQKGINTLLSLEETYADISPVRIAKN 283
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+ ++SV+AFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EVR L + EV
Sbjct: 278 VRIAKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVCEVRELYREGVKEVTLL 337
Query: 63 QMNVN 67
NVN
Sbjct: 338 GQNVN 342
>gi|328872998|gb|EGG21365.1| hypothetical protein DFA_01246 [Dictyostelium fasciculatum]
Length = 636
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+ E +GCQMN DTEV+++++K SGY + + ADVI + TCAIRENAE K+W RL
Sbjct: 133 VFVESYGCQMNFADTEVIYAVMKQSGYIIADSAKSADVIFLNTCAIRENAEDKIWFRLTE 192
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R K++ K+ + + IGVLGCMAERLK+ LL+ + ++DLV GPD+Y+ LP LL
Sbjct: 193 LRKQKRV-KRSQGGNMVIGVLGCMAERLKQKLLDSKNSVDLVVGPDAYRSLPALLGRIED 251
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
QTAINV+LS DETYADI P ++G
Sbjct: 252 GQTAINVMLSADETYADIAPVRHDSNG 278
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + + A+VSIMRGC+NMC+YCIVPFTRGRERSRP++SILDEV+ LS Y E+
Sbjct: 272 VRHDSNGLCAYVSIMRGCNNMCSYCIVPFTRGRERSRPLESILDEVKQLSKTGYKEITLL 331
Query: 63 QMNVN 67
NVN
Sbjct: 332 GQNVN 336
>gi|393907784|gb|EFO19966.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Loa loa]
Length = 582
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 7/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV F +GCQMNVND E+V S+L SSGY + + +EAD++L+MTC+IRE AE KVWD L+
Sbjct: 91 KVKFITYGCQMNVNDVELVRSLLLSSGYMETDDVKEADIVLLMTCSIREGAENKVWDELK 150
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +I +K +GVLGCMAER++ +LL + +D+VAGPDSY+DLPRLLA+
Sbjct: 151 VLR---KIRRKKGV----VGVLGCMAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIAR 203
Query: 174 SNQTAINVLLSLDETYADITP 194
AINV LSL+ETYADI P
Sbjct: 204 CGSMAINVQLSLEETYADIVP 224
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ S +AFVSIMRGCDNMCTYC+VP+TRGRERSRP+ SILDE+R+LSD+ +V
Sbjct: 225 VRKDKFSKTAFVSIMRGCDNMCTYCVVPYTRGRERSRPINSILDEIRSLSDEGVKQVTLL 284
Query: 63 QMNVN 67
NVN
Sbjct: 285 GQNVN 289
>gi|312084023|ref|XP_003144103.1| hypothetical protein LOAG_08525 [Loa loa]
Length = 568
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 7/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV F +GCQMNVND E+V S+L SSGY + + +EAD++L+MTC+IRE AE KVWD L+
Sbjct: 77 KVKFITYGCQMNVNDVELVRSLLLSSGYMETDDVKEADIVLLMTCSIREGAENKVWDELK 136
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +I +K +GVLGCMAER++ +LL + +D+VAGPDSY+DLPRLLA+
Sbjct: 137 VLR---KIRRKKGV----VGVLGCMAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIAR 189
Query: 174 SNQTAINVLLSLDETYADITP 194
AINV LSL+ETYADI P
Sbjct: 190 CGSMAINVQLSLEETYADIVP 210
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ S +AFVSIMRGCDNMCTYC+VP+TRGRERSRP+ SILDE+R+LSD+ +V
Sbjct: 211 VRKDKFSKTAFVSIMRGCDNMCTYCVVPYTRGRERSRPINSILDEIRSLSDEGVKQVTLL 270
Query: 63 QMNVN 67
NVN
Sbjct: 271 GQNVN 275
>gi|412988260|emb|CCO17596.1| predicted protein [Bathycoccus prasinos]
Length = 694
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 110/154 (71%), Gaps = 5/154 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVND+EV+ S+L +G+++ +A+VIL+ TCAIR+ AE K+W RL +
Sbjct: 144 VYVETYGCQMNVNDSEVMMSVLNDNGFTETKDINDANVILINTCAIRDKAEAKIWQRLAY 203
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY- 173
+RS+ + KK P+ +GVLGCMAERLK LLE++Q D+VAGPD+Y+DLP L+ +
Sbjct: 204 FRSLGKPKKKTER-PV-VGVLGCMAERLKTQLLEEDQLADIVAGPDAYRDLPNLIDTVHN 261
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ ++NV LS++ETYAD+ P V DG S +V
Sbjct: 262 TGNKSMNVQLSVEETYADVIP--VRPDGTHSAFV 293
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 44/57 (77%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFV+IMRGCDN CT+CIVP+TRG+ERSR + SIL EVR LS++ EV NVN
Sbjct: 290 SAFVTIMRGCDNCCTFCIVPYTRGQERSRDLASILYEVRVLSEQGVKEVTLLGQNVN 346
>gi|408674988|ref|YP_006874736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Emticicia
oligotrophica DSM 17448]
gi|387856612|gb|AFK04709.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Emticicia
oligotrophica DSM 17448]
Length = 477
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ K+Y E +GCQMN D+E+V SIL+ + ++ + EA++IL+ TCAIRENAE
Sbjct: 27 DEISTAKRKLYIESYGCQMNFADSEIVASILRENDFATTSKIEEAELILLNTCAIRENAE 86
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
KV RL+ MKQ K +KIG+LGCMAERLK LLE+E+ +D+V GPD+Y+DL
Sbjct: 87 QKVRHRLQHLVPMKQKRKN-----VKIGILGCMAERLKTKLLEEEKVVDMVVGPDAYRDL 141
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L+ Q A+NV LS +ETYADITP + ++G
Sbjct: 142 PNLINEVEDGQKAVNVFLSREETYADITPIRLDSNG 177
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ + V+AF+SIMRGCDNMC++C+VP+TRGRERSR SI+ E L ++ Y EV
Sbjct: 171 IRLDSNGVTAFISIMRGCDNMCSFCVVPYTRGRERSRDPHSIVKEATELFEQGYREVTLL 230
Query: 63 QMNVN 67
NV+
Sbjct: 231 GQNVD 235
>gi|297798268|ref|XP_002867018.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312854|gb|EFH43277.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 636
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCAI 100
+S LD A ++Y E +GCQMN+ND E+V SI+K+SGY +V P A+VI + TCAI
Sbjct: 115 ESTLDSDVASKGRIYHETYGCQMNINDMEIVLSIMKNSGYKEVVTDPESAEVIFINTCAI 174
Query: 101 RENAEGKVWDRLRFYRSMKQIHK-------KHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
R+NAE +VW RL ++ +K+ K P K+ VLGCMAERLK +L+ ++ +
Sbjct: 175 RDNAEQRVWQRLNYFWFLKREWKVNVAKGRAQSLKPPKVVVLGCMAERLKDKILDSDKMV 234
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 235 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN 281
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++E+S++AFVS+MRGC+NMC +CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 276 VRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLL 335
Query: 63 QMNVN 67
NVN
Sbjct: 336 GQNVN 340
>gi|357156278|ref|XP_003577401.1| PREDICTED: CDK5RAP1-like protein-like [Brachypodium distachyon]
Length = 596
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 107/159 (67%), Gaps = 8/159 (5%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKV 108
A ++Y E +GCQMNVND E+V SI+K GY++ V P A++I + TCAIR+NAE KV
Sbjct: 86 AKKGRIYHETYGCQMNVNDMEIVLSIMKKEGYNEIVPDPESAEIIFINTCAIRDNAEQKV 145
Query: 109 WDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161
W RL ++ +K+ K + P KI VLGCMAERLK+ +L+ ++ +D+V GPD+
Sbjct: 146 WQRLNYFWFLKRQWKSNVAGGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDA 205
Query: 162 YKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
Y+DLPRLL Q IN LLSL+ETYADITP +S +
Sbjct: 206 YRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDN 244
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L D EV
Sbjct: 239 VRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWDAGVKEVMLL 298
Query: 63 QMNVN 67
NVN
Sbjct: 299 GQNVN 303
>gi|327404270|ref|YP_004345108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
16823]
gi|327319778|gb|AEA44270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM
16823]
Length = 479
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 111/159 (69%), Gaps = 5/159 (3%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
+ R ++I+ E S K+Y E +GCQMN +D+EVV SI+ GY+ + EADV+L+
Sbjct: 12 DEGRQGEAIILEGGTGSKKLYVESYGCQMNFSDSEVVASIMTKEGYTTTRNIDEADVVLI 71
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC+IRENAE +V +RL ++ +K L +G+LGCMAERLK++LLE+EQ +DL
Sbjct: 72 NTCSIRENAETRVRNRLTEFKK-----RKAEQPNLVVGILGCMAERLKQALLEEEQLVDL 126
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
VAGPD+Y+DLP L+ + Q A+NVLLS +ETYADI+P
Sbjct: 127 VAGPDAYRDLPNLIDEVGTGQRAVNVLLSREETYADISP 165
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+++ VSAFV+I RGCDNMC++C+VPFTRGRERSR +I+ E + L Y EV
Sbjct: 166 VRMDQGGVSAFVTITRGCDNMCSFCVVPFTRGRERSRDPLTIVQECKDLFANGYREVTLL 225
Query: 63 QMNVN 67
NV+
Sbjct: 226 GQNVD 230
>gi|372210059|ref|ZP_09497861.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Flavobacteriaceae bacterium S85]
Length = 482
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 115/168 (68%), Gaps = 7/168 (4%)
Query: 34 GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
++ P+ + + ++ + K+Y E +GCQMN+ND+E+V +IL GY+ + EAD++
Sbjct: 13 ANKQGHPLST--EHIKGNTKKLYLESYGCQMNMNDSEIVAAILSEQGYNTTTNLNEADLV 70
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
+V TC+IRE AE V RL Y ++K+I+ +K+GVLGCMAERLK L++E+ +
Sbjct: 71 MVNTCSIREKAEQTVRKRLEKYNAVKKINP-----AMKVGVLGCMAERLKAKFLDEEKIV 125
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLV GPD+Y+DLP LL+ + A+NVLLS DETYAD++P ++++G
Sbjct: 126 DLVVGPDAYRDLPNLLSEVEDGRDAVNVLLSRDETYADVSPVRLNSNG 173
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFV+I RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L K Y E+
Sbjct: 167 VRLNSNGVSAFVTITRGCDNMCTFCVVPFTRGRERSRDPQSIISEIQDLVTKGYKEITLL 226
Query: 63 QMNVN 67
NV+
Sbjct: 227 GQNVD 231
>gi|340502561|gb|EGR29240.1| hypothetical protein IMG5_160390 [Ichthyophthirius multifiliis]
Length = 375
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 116/176 (65%), Gaps = 13/176 (7%)
Query: 35 RERSRPMQSILDEVRALS------DKVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHP 87
++++ P+ D+V L+ +K YF E +GCQMN +DTE++ IL++SGY
Sbjct: 40 KKQNNPINIQQDKVPYLTQLNLNQNKKYFIETYGCQMNQSDTEIINGILQNSGYQSTKVY 99
Query: 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLL 147
EAD++ + TCAIRE AE K+W RL R+ K+ KK L GVLGCMAERLK L+
Sbjct: 100 EEADIVFLNTCAIREGAESKIWRRLEQIRAEKKKEKKS----LITGVLGCMAERLKYKLV 155
Query: 148 EKEQALDLVAGPDSYKDLPRLLA--LTYSNQTAINVLLSLDETYADITPKAVSTDG 201
EK + +D++AGPD+YKDLPRL+ + SN +INV LSLDETYAD+TP + +G
Sbjct: 156 EKNKVVDIIAGPDAYKDLPRLIESLIPNSNNFSINVQLSLDETYADVTPIRQNPEG 211
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R N + A+VSIM+GC+NMC++CIVPFTRGRERSR ++SI+ EV L ++ ++
Sbjct: 205 IRQNPEGPEAYVSIMKGCNNMCSFCIVPFTRGRERSRSIESIIKEVEILRNEGVKQITLL 264
Query: 63 QMNVN 67
NVN
Sbjct: 265 GQNVN 269
>gi|83596005|gb|ABC25364.1| tRNA-i(6)A37 thiotransferase enzyme [uncultured marine bacterium
Ant29B7]
Length = 484
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL GY + P+EAD+IL+ TC+IR+ AE V +R
Sbjct: 28 SKKLYLESYGCQMNFSDSEIVVSILDKEGYETTSDPKEADLILLNTCSIRDKAEQTVRNR 87
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ ++ +K+ +K +KIG+LGCMAER+K LLE+EQ +DLV GPD+Y+DLP+L+
Sbjct: 88 LKHFKRIKRENKD-----MKIGILGCMAERVKAKLLEEEQLVDLVVGPDAYRDLPQLMKE 142
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINVLLS DETY DI P + +G
Sbjct: 143 LDGGKKAINVLLSKDETYHDIEPVRLGGNG 172
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMC++C+VPFTRGRERSR Q+I+ E + L Y EV
Sbjct: 166 VRLGGNGVTAFVSITRGCDNMCSFCVVPFTRGRERSRNPQTIVVECQKLWADGYKEVTLL 225
Query: 63 QMNVN 67
NV+
Sbjct: 226 GQNVD 230
>gi|326495462|dbj|BAJ85827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 586
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 104/153 (67%), Gaps = 8/153 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMNVND E+V SI+K GY+ V P A++I + TCAIR+NAE KVW RL
Sbjct: 80 RIYHETYGCQMNVNDMEIVLSIMKKEGYNDIVPDPESAEIIFINTCAIRDNAEQKVWQRL 139
Query: 113 RFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P KI VLGCMAERLK+ +L+ ++ +D+V GPD+Y+DL
Sbjct: 140 NYFWFLKRQWKTNVAGGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 199
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLL Q IN LLSL+ETYADITP +S
Sbjct: 200 PRLLQEVDYGQKGINTLLSLEETYADITPVRIS 232
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVS+MRGC+NMC++CIVPFTRGRERSRP+ S++ EV L EV
Sbjct: 229 VRISDNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVSSVVREVGELWYAGVKEVMLL 288
Query: 63 QMNVN 67
NVN
Sbjct: 289 GQNVN 293
>gi|83281193|dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated protein [Nicotiana
tabacum]
Length = 623
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 106/156 (67%), Gaps = 8/156 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMNVND E+V SI+K++GY++ V P A++I + TCAIR+NAE KVW RL
Sbjct: 114 RIYHETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNAELKVWQRL 173
Query: 113 RFYRSMKQIHKKH-------RTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y+DL
Sbjct: 174 NYFWFLKRQWKSNVASGRSQSAHPPKVSVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 233
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
PRLL Q IN LLSL+ETYADI P +S +
Sbjct: 234 PRLLEEVDYGQKGINTLLSLEETYADINPVRISKNS 269
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S+SAFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 263 VRISKNSISAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLL 322
Query: 63 QMNVN 67
NVN
Sbjct: 323 GQNVN 327
>gi|281207324|gb|EFA81507.1| hypothetical protein PPL_05496 [Polysphondylium pallidum PN500]
Length = 616
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 105/148 (70%), Gaps = 7/148 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+ E +GCQMN DTE+V+S+++S+GY+ + AD++ + TCAIRENAE K+W RL
Sbjct: 127 VFVESYGCQMNFADTEIVYSVMRSAGYTVAESAKSADIVFLNTCAIRENAEDKIWFRL-- 184
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTY 173
++ K+ R IGVLGCMAERLK+ LLE +++DLV GPD+Y+ LP LL+ +
Sbjct: 185 ----SELRKQKRRQGTVIGVLGCMAERLKQKLLESNKSVDLVVGPDAYRSLPSLLSRIED 240
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+QTAINV+LS DETYADI P +++G
Sbjct: 241 GDQTAINVMLSADETYADIAPIRTNSNG 268
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R N + VSA+VSIMRGC+NMC+YCIVPFTRGRERSR + SI+DEV+ LS Y E+
Sbjct: 262 IRTNSNGVSAYVSIMRGCNNMCSYCIVPFTRGRERSRSIHSIVDEVKQLSADGYKEITLL 321
Query: 63 QMNVNDTEVVWSILKSSGYSK---VNHPREA 90
NVN + +++ K V PRE
Sbjct: 322 GQNVNSYNFIDEVVEPLAEKKEKEVLTPREG 352
>gi|255560986|ref|XP_002521505.1| radical sam protein, putative [Ricinus communis]
gi|223539183|gb|EEF40776.1| radical sam protein, putative [Ricinus communis]
Length = 535
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
Query: 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVM 96
++ ++ LD + ++Y E +GCQMN+ND E+V SI+K +GY +V + P A++I +
Sbjct: 11 AQALEVPLDTEIPVRGRIYHETYGCQMNINDMEIVLSIMKDAGYREVVDVPESAEIIFIN 70
Query: 97 TCAIRENAEGKVWDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEK 149
TCAIR+NAE KVW RL ++ +K+ K + T P K+ VLGCMAERLK +L+
Sbjct: 71 TCAIRDNAEQKVWQRLNYFWFLKRHWKSNVTIGRSQSLSPPKVVVLGCMAERLKDKILDA 130
Query: 150 EQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
++ +D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI P +S +
Sbjct: 131 DKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADICPVRISKN 181
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S++AFVS+MRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L + EV
Sbjct: 176 VRISKNSITAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVKEVAELWKEGVKEVTLL 235
Query: 63 QMNVN 67
NVN
Sbjct: 236 GQNVN 240
>gi|66807387|ref|XP_637416.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
gi|74853166|sp|Q54KV4.1|CK5P1_DICDI RecName: Full=CDK5RAP1-like protein
gi|60465830|gb|EAL63904.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4]
Length = 607
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P S L + KV+ E +GCQMNV+D EV+ SI+KSSGY+ N AD++ + TC+
Sbjct: 94 PYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCS 153
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRENAE K+W RL ++ I +K L +GVLGCMAERLK+ LLE + +D+V GP
Sbjct: 154 IRENAEAKIWLRL---TELRAIRRKQGRPNLIVGVLGCMAERLKEKLLESDMKVDIVVGP 210
Query: 160 DSYKDLPRLLALTY--SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
D+Y+ LP LLA QTAINV+LS DETYADI P +D + S YV
Sbjct: 211 DAYRSLPSLLATLEDGEQQTAINVILSADETYADIKP-VRKSDNQVSAYV 259
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR +++ VSA+VSIMRGC+NMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ + E+
Sbjct: 248 VRKSDNQVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLL 307
Query: 63 QMNVN 67
NVN
Sbjct: 308 GQNVN 312
>gi|145356333|ref|XP_001422387.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582629|gb|ABP00704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 579
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVND+EV+ ++L+ +GY + +ADVIL+ TCAIR+ AE K+W RL +
Sbjct: 69 VYVETYGCQMNVNDSEVMMAVLEGAGYDETKEVNDADVILINTCAIRDKAEAKIWQRLAY 128
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+RS+ + K R+ +GVLGCMAER+K+ LLE ++ D+VAGPD+Y+DLP L+
Sbjct: 129 FRSLG--NGKKRSEKPVVGVLGCMAERIKEKLLEADRLADIVAGPDAYRDLPNLIDAVVG 186
Query: 175 NQ--TAINVLLSLDETYADITPKAVSTDGRRSIYV 207
N A+NV LS++ETYADI P V G S +V
Sbjct: 187 NPGGKAMNVQLSVEETYADIIP--VREAGSHSAFV 219
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
S SAFV+IMRGCDN C +CIVP+TRGRERSR + SI+ E+R LS++ EV
Sbjct: 214 SHSAFVTIMRGCDNACAFCIVPYTRGRERSRDLASIMYEIRLLSEQGVKEV 264
>gi|147794658|emb|CAN73510.1| hypothetical protein VITISV_007911 [Vitis vinifera]
Length = 590
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 8/155 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH-PREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K +GY++V P A+VI + TCAIR+NAE KVW RL
Sbjct: 76 RIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQKVWQRL 135
Query: 113 RFYRSMKQ-------IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ I + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y+DL
Sbjct: 136 NYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 195
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
PRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 196 PRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 230
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 6/85 (7%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 225 VRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLL 284
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHP 87
NVN S +SG+ K P
Sbjct: 285 GQNVN------SYNDASGFDKEVEP 303
>gi|225431257|ref|XP_002274814.1| PREDICTED: CDK5RAP1-like protein-like [Vitis vinifera]
Length = 626
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 8/155 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH-PREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K +GY++V P A+VI + TCAIR+NAE KVW RL
Sbjct: 112 RIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQKVWQRL 171
Query: 113 RFYRSMKQ-------IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ I + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y+DL
Sbjct: 172 NYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 231
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
PRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 232 PRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 266
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 6/85 (7%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 261 VRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLL 320
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHP 87
NVN S +SG+ K P
Sbjct: 321 GQNVN------SYNDASGFDKEVEP 339
>gi|357483621|ref|XP_003612097.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Medicago
truncatula]
gi|355513432|gb|AES95055.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Medicago
truncatula]
Length = 752
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 8/158 (5%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWD 110
+ ++Y E +GCQMNVND E+V SI+K++GY++ V P A++I + TCAIR+NAE KVW
Sbjct: 128 TGRIYHETYGCQMNVNDMEIVLSIMKNAGYNEIVTAPENAEIIFINTCAIRDNAEMKVWQ 187
Query: 111 RLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
RL ++ +K+ K + P K+ VLGCMAERLK+ +L+ ++ +D+V GPD+Y+
Sbjct: 188 RLNYFWFLKRNWKANVATGRSQSLRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYR 247
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLPRLL Q IN LLSL+ETYADI P +S +
Sbjct: 248 DLPRLLEEVEYGQKGINTLLSLEETYADINPVRISQNS 285
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 14/98 (14%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S+SAFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 279 VRISQNSISAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLL 338
Query: 63 QMNV---NDTEVV---------WSILKSSGYSKVNHPR 88
NV ND VV W + S G+S ++ R
Sbjct: 339 GQNVNSYNDASVVEKEAEAGSNWKL--SEGFSSISKVR 374
>gi|297735074|emb|CBI17436.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 8/155 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH-PREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K +GY++V P A+VI + TCAIR+NAE KVW RL
Sbjct: 183 RIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQKVWQRL 242
Query: 113 RFYRSMKQ-------IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ I + P K+ VLGCMAERLK +L+ ++ +D+V GPD+Y+DL
Sbjct: 243 NYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 302
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
PRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 303 PRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 337
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 6/85 (7%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 332 VRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLL 391
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHP 87
NVN S +SG+ K P
Sbjct: 392 GQNVN------SYNDASGFDKEVEP 410
>gi|356540793|ref|XP_003538869.1| PREDICTED: CDK5RAP1-like protein-like [Glycine max]
Length = 611
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 8/158 (5%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWD 110
+ ++Y E +GCQMNVND E+V SI+K++GY + V+ P A++I + TCAIR+NAE KVW
Sbjct: 102 TGRIYHETYGCQMNVNDMEIVLSIMKNAGYGEIVSVPESAEIIFINTCAIRDNAEQKVWQ 161
Query: 111 RLRFYRSMKQIHKKH-------RTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
RL ++ +K+ K + P K+ VLGCMAERLK+ +L+ ++ +D+V GPD+Y+
Sbjct: 162 RLNYFWFLKRHWKNNVATGRSQSLHPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYR 221
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLPRLL Q IN LLSL+ETYADI P +S +
Sbjct: 222 DLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNS 259
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 253 VRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLL 312
Query: 63 QMNVN 67
NVN
Sbjct: 313 GQNVN 317
>gi|124002076|ref|ZP_01686930.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
23134]
gi|123992542|gb|EAY31887.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC
23134]
Length = 493
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 104/148 (70%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SI+ G+ + ADV+L+ TCAIR+NAE +V +RLR
Sbjct: 35 KLYIESYGCQMNFSDSEIVASIMSEHGFDTTSEVDNADVVLLNTCAIRDNAEQRVRNRLR 94
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
H K++ + +GVLGCMAERLKK LLE+EQ +D+VAGPDSY+DLP+L+
Sbjct: 95 NLN-----HIKNKKPGMVVGVLGCMAERLKKRLLEEEQMVDIVAGPDSYRDLPQLVLQAD 149
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
Q A+NV LS DETYADI P ++++G
Sbjct: 150 EGQEAVNVFLSRDETYADIAPVRLNSNG 177
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR S++ E + L DK Y EV
Sbjct: 171 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSVVKEAQDLFDKGYREVTLL 230
Query: 63 QMNVNDTEVVWS 74
NV+ +WS
Sbjct: 231 GQNVD--SYLWS 240
>gi|354604519|ref|ZP_09022508.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Alistipes indistinctus
YIT 12060]
gi|353347098|gb|EHB91374.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Alistipes indistinctus
YIT 12060]
Length = 457
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+EVV SIL+ G+ P ADVIL+ TC+IR+NAE ++W RLR
Sbjct: 20 KLYIETYGCQMNAGDSEVVLSILQGDGFRYTEDPAGADVILINTCSIRDNAEQRIWGRLR 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R K+ +K L +GV+GCMAERL++ L+++E+ ++LVAGPD+Y+DLPRLL
Sbjct: 80 ELRQYKKKNKG-----LLVGVIGCMAERLREKLIDQEELVNLVAGPDAYRDLPRLLREAG 134
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
A+NVLLS +ETYA+I+P + +G
Sbjct: 135 GGAKAVNVLLSGEETYAEISPVRLDKNG 162
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+++ VSA++SIMRGC+NMC+YC+VP+TRG ERSR Q+IL E R L D Y EV
Sbjct: 156 VRLDKNGVSAYISIMRGCNNMCSYCVVPYTRGAERSRDPQTILREARELFDGGYREVTLL 215
Query: 63 QMNVN 67
NVN
Sbjct: 216 GQNVN 220
>gi|356495378|ref|XP_003516555.1| PREDICTED: CDK5RAP1-like protein-like [Glycine max]
Length = 611
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 8/156 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMNVND E+V SI+K++GY + V+ P A++I + TCAIR+NAE KVW RL
Sbjct: 104 RIYHETYGCQMNVNDMEIVLSIMKNAGYGEIVSVPESAEIIFINTCAIRDNAEQKVWQRL 163
Query: 113 RFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P K+ VLGCMAERLK+ +L+ ++ +D+V GPD+Y+DL
Sbjct: 164 NYFWFLKRHWKSNVATGRSQSMRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 223
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
PRLL Q IN LLSL+ETYADI P +S +
Sbjct: 224 PRLLEEVDYGQRGINTLLSLEETYADINPVRISKNS 259
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVS+MRGC+NMC++CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 253 VRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLL 312
Query: 63 QMNVN 67
NVN
Sbjct: 313 GQNVN 317
>gi|378734948|emb|CCG14146.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [uncultured Flavobacteriia
bacterium]
Length = 481
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 103/148 (69%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E FGC MN +D+E+V SIL GY+ + EA++ILV TC+IR+ AE + RL
Sbjct: 25 KLYIESFGCAMNFSDSEIVASILSKKGYNTTDTIEEAELILVNTCSIRDKAEQTIRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y S+K+ + K +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP LL
Sbjct: 85 KYNSLKKNNPK-----MKVGVLGCMAERLKHKFLEEEKIVDLVVGPDAYKDLPNLLEEVD 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S + AINVLLS DETY DI+P ++++G
Sbjct: 140 SGRNAINVLLSKDETYGDISPVRLNSNG 167
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAF+SI RGCDNMCT+C+VPFTRGRERSR QSI+DE+ L+ K + E+
Sbjct: 161 VRLNSNGVSAFISITRGCDNMCTFCVVPFTRGRERSRDPQSIIDELNDLAAKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|126663275|ref|ZP_01734273.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
gi|126624933|gb|EAZ95623.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38]
Length = 482
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 113/166 (68%), Gaps = 5/166 (3%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E+ + +LD+ + K++ E +GCQMN +D+E+V SIL +GY+ + +AD++LV
Sbjct: 7 EKKQGQSLVLDQKEGNTKKLFIESYGCQMNFSDSEIVASILYENGYNTTQNLEDADLVLV 66
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC+IR+ AE + RL Y ++K+I+ +K+GVLGCMAERLK LE+E+ +D+
Sbjct: 67 NTCSIRDKAEQTIRKRLEKYNAVKKINP-----TMKVGVLGCMAERLKSQFLEEEKIVDM 121
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
V GPD+YKDLP LLA + AINV+LS +ETY DI+P ++++G
Sbjct: 122 VVGPDAYKDLPNLLAEVEEGRDAINVILSKEETYGDISPVRLNSNG 167
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI+DE++ L D+ + EV
Sbjct: 161 VRLNSNGVNAFVSITRGCDNMCTFCVVPFTRGRERSREPQSIIDEIQDLYDRGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|392965044|ref|ZP_10330464.1| RNA modification enzyme, MiaB family [Fibrisoma limi BUZ 3]
gi|387846427|emb|CCH52510.1| RNA modification enzyme, MiaB family [Fibrisoma limi BUZ 3]
Length = 475
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 111/156 (71%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ ++Y E +GCQMN D+E+V ++++++G++ + EAD+I + TCAIRENAE
Sbjct: 27 DELATGKKRLYIESYGCQMNFADSEIVAAVMRNAGFATTSSAEEADLIFLNTCAIRENAE 86
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
KV +RL+ ++K+ R L +G+LGCMAERLK LLE+E+ +D+VAGPD+Y+D+
Sbjct: 87 QKVRNRLQHLNALKR-----RKPDLLVGMLGCMAERLKTKLLEEEKVVDIVAGPDAYRDI 141
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P+L+ S Q A+NV LS +ETYADI P ++++G
Sbjct: 142 PKLVEEAESGQKAVNVFLSREETYADIAPIRLNSNG 177
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSIMRGCDNMC++C+VPFTRGRERSR SI+ E AL + EV
Sbjct: 171 IRLNSNGVTAFVSIMRGCDNMCSFCVVPFTRGRERSRDPHSIVREAEALLADGFKEVTLL 230
Query: 63 QMNVN 67
NV+
Sbjct: 231 GQNVD 235
>gi|255083280|ref|XP_002504626.1| predicted protein [Micromonas sp. RCC299]
gi|226519894|gb|ACO65884.1| predicted protein [Micromonas sp. RCC299]
Length = 495
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 111/154 (72%), Gaps = 5/154 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVND+EV+ S+LK GY + +ADVILV TCAIR+ AE K+W RL +
Sbjct: 4 VYVETYGCQMNVNDSEVMLSVLKDRGYDETGDMHDADVILVNTCAIRDKAEAKIWQRLAY 63
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALTY 173
++S+++ KK P+ +GVLGCMAERLK LLE +Q DLVAGPD+Y+DLP L+ A+
Sbjct: 64 FKSLRRKKKKSEK-PV-VGVLGCMAERLKTQLLEADQLADLVAGPDAYRDLPNLIEAVAG 121
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ + A+NV LS++ETYADI P V +G + +V
Sbjct: 122 TGEKAMNVQLSVEETYADIIP--VRKEGAHAAFV 153
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 43/61 (70%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +AFV+IMRGCDN C +CIVP+TRGRERSR SI EVR LS++ EV NV
Sbjct: 146 EGAHAAFVTIMRGCDNACAFCIVPYTRGRERSRDPASIEYEVRLLSEQGVKEVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>gi|242020507|ref|XP_002430694.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
humanus corporis]
gi|212515884|gb|EEB17956.1| CDK5 regulatory subunit-associated protein, putative [Pediculus
humanus corporis]
Length = 581
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 105/143 (73%), Gaps = 5/143 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ EV GCQMNVND E+V S+L+ GY + +ADVI ++TC+IRE+AE K+W
Sbjct: 79 NQKVFLEVHGCQMNVNDAEIVLSVLQKHGYQRTLSKDDADVIFILTCSIRESAESKIW-- 136
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
++ + H K + LKIG+LGCMAERLK ++EKE+ +DLVAGPD+YKDLPRLL
Sbjct: 137 ---FKLKELNHLKKKKKNLKIGLLGCMAERLKDKVIEKEKIVDLVAGPDAYKDLPRLLTT 193
Query: 172 TYSNQTAINVLLSLDETYADITP 194
T +NQ AINVLLS DETYAD+ P
Sbjct: 194 TSNNQKAINVLLSFDETYADVMP 216
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 5/88 (5%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLNE++VSAFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SIL+EV+ LSD+ ++
Sbjct: 215 MPVRLNENNVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPIDSILEEVKILSDQGVKQIT 274
Query: 61 GCQMNVNDTEVVWSILKSSGY-SKVNHP 87
NVN + +KS Y S N P
Sbjct: 275 LLGQNVNS----YRDIKSKEYLSTFNEP 298
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 8/153 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K+ GY + V P A++I + TCAIR+NAE KVW RL
Sbjct: 88 RIYHETYGCQMNINDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 147
Query: 113 RFYRSMKQIHKKH-------RTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P KI VLGCMAERLK+ +L+ ++ +D+V GPD+Y+DL
Sbjct: 148 NYFWFLKREWKANVAEGRAKSMRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 207
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLL +N LLSL+ETYADITP +S
Sbjct: 208 PRLLQEVDYGHKGMNTLLSLEETYADITPVRIS 240
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S++AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L EV
Sbjct: 237 VRISDNSITAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKVGVKEVMLL 296
Query: 63 QMNVN 67
NVN
Sbjct: 297 GQNVN 301
>gi|414591663|tpg|DAA42234.1| TPA: hypothetical protein ZEAMMB73_668706 [Zea mays]
Length = 594
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 8/153 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K+ GY + V P A++I + TCAIR+NAE KVW RL
Sbjct: 88 RIYHETYGCQMNINDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 147
Query: 113 RFYRSMKQIHKKH-------RTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P KI VLGCMAERLK+ +L+ ++ +D+V GPD+Y+DL
Sbjct: 148 NYFWFLKREWKANVAEGRAKSMRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 207
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLL +N LLSL+ETYADITP +S
Sbjct: 208 PRLLQEVDYGHKGMNTLLSLEETYADITPVRIS 240
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++S++AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L EV
Sbjct: 237 VRISDNSITAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKVGVKEVMLL 296
Query: 63 QMNVN 67
NVN
Sbjct: 297 GQNVN 301
>gi|156339127|ref|XP_001620089.1| hypothetical protein NEMVEDRAFT_v1g149213 [Nematostella vectensis]
gi|156204445|gb|EDO27989.1| predicted protein [Nematostella vectensis]
Length = 323
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMN+ND+E+V SIL G++ H +AD++LV TC+IRE AE + R
Sbjct: 26 TKKLFIESYGCQMNMNDSEIVASILAQQGFNTTQHLEDADLVLVNTCSIREKAEQTIRKR 85
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ Y ++K+ + K +K+GVLGCMAERLK+ LE+E+ +DLV GPD+Y+DLP LL
Sbjct: 86 LQKYNAVKKKNTK-----MKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYRDLPNLLQE 140
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY D+ P ++ +G
Sbjct: 141 IDEGRDAVNVILSKDETYGDVAPVRLNNNG 170
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+E+++++D+ + E+
Sbjct: 164 VRLNNNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEIQSMADQNFKEITLL 223
Query: 63 QMNVN 67
NV+
Sbjct: 224 GQNVD 228
>gi|402591697|gb|EJW85626.1| CDK5 regulatory subunit-associated protein 1 [Wuchereria bancrofti]
Length = 1106
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 102/140 (72%), Gaps = 7/140 (5%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+ F +GCQMN+ND E+V S+L SSGY + + +EAD+IL+MTC+IRE AE KVWD L+
Sbjct: 630 IKFITYGCQMNINDVELVRSLLLSSGYVETDDVKEADIILLMTCSIREGAENKVWDELKV 689
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R +++ KK +GVLGCMAER++ +LL + +D+VAGPDSY+DLPRLLA+
Sbjct: 690 LRKIRR--KKG-----VVGVLGCMAERVRHNLLTCTENVDVVAGPDSYRDLPRLLAIARC 742
Query: 175 NQTAINVLLSLDETYADITP 194
AINV LSL+ETYAD+ P
Sbjct: 743 GSMAINVQLSLEETYADVVP 762
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ S +AFVSIMRGCDNMCTYCIVP+TRGRERSRPM SILDE+R LSD+ +V
Sbjct: 763 VRKDKFSKTAFVSIMRGCDNMCTYCIVPYTRGRERSRPMNSILDEIRRLSDEGVKQVTLL 822
Query: 63 QMNVN 67
NVN
Sbjct: 823 GQNVN 827
>gi|284035911|ref|YP_003385841.1| MiaB family RNA modification protein [Spirosoma linguale DSM 74]
gi|283815204|gb|ADB37042.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74]
Length = 513
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 113/160 (70%), Gaps = 5/160 (3%)
Query: 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
+++ DE+ ++Y E +GCQMN D+E+V ++++++GY+ + EADVI + TCAIR
Sbjct: 27 RTLEDELSVGKKRLYIESYGCQMNFADSEIVAAVMRNAGYATTSSADEADVIFLNTCAIR 86
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161
+NAE KV RL+ +K+ + L +G+LGCMAERLK LLE+E+ +D+VAGPD+
Sbjct: 87 DNAEQKVRHRLKHLTGLKRQKPE-----LLVGMLGCMAERLKTKLLEEEKVVDIVAGPDA 141
Query: 162 YKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
Y+D+P+L+ S Q A+NV LS +ETYADI+P ++++G
Sbjct: 142 YRDIPKLVEEAESGQKAVNVFLSREETYADISPIRLNSNG 181
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSIMRGCDNMC++C+VPFTRGRERSR SI+ E + L D+ Y EV
Sbjct: 175 IRLNSNGVTAFVSIMRGCDNMCSFCVVPFTRGRERSRDPFSIVREAQDLFDQGYREVTLL 234
Query: 63 QMNVN 67
NV+
Sbjct: 235 GQNVD 239
>gi|193214302|ref|YP_001995501.1| MiaB family RNA modification protein [Chloroherpeton thalassium
ATCC 35110]
gi|229890479|sp|B3QVA0.1|MIAB_CHLT3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|193087779|gb|ACF13054.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium
ATCC 35110]
Length = 451
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 102/141 (72%), Gaps = 5/141 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMN +DTE++ SIL +GY+ + AD+I + TCA+RENAE ++ +RL+
Sbjct: 19 RVYLETYGCQMNFSDTEIISSILSDAGYAIAESEQVADIIFLNTCAVRENAEQRIRNRLQ 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ + K L +GVLGCMAERL++ L ++E+ +DL+AGPD+Y+ LP LL L
Sbjct: 79 NLRPLKKQNPK-----LIVGVLGCMAERLREKLFQEEKIVDLIAGPDAYRTLPNLLDLAE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
S + A NV+LSL+ETYADI P
Sbjct: 134 SGEKAANVMLSLEETYADINP 154
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L ++ SAF++IMRGCDNMC +CIVP+TRGRERSRPM SILDE++ LSD+ EV
Sbjct: 155 LRKNGHSAFLAIMRGCDNMCAFCIVPYTRGRERSRPMTSILDELKQLSDEGTREVTLLGQ 214
Query: 65 NVN 67
NVN
Sbjct: 215 NVN 217
>gi|242071517|ref|XP_002451035.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
gi|241936878|gb|EES10023.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor]
Length = 601
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 8/153 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRL 112
++Y E +GCQMN+ND E+V SI+K+ GY + V P A++I + TCAIR+NAE KVW RL
Sbjct: 95 RIYHETYGCQMNINDMEIVLSIMKNDGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 154
Query: 113 RFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
++ +K+ K + P KI VLGCMAERLK+ +L+ ++ +D+V GPD+Y+DL
Sbjct: 155 NYFWFLKREWKANVAEGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 214
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLL +N LLSL+ETYADITP +S
Sbjct: 215 PRLLQEVDYGHKGMNTLLSLEETYADITPVRIS 247
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L EV
Sbjct: 244 VRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVMLL 303
Query: 63 QMNVN 67
NVN
Sbjct: 304 GQNVN 308
>gi|345867729|ref|ZP_08819734.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bizionia argentinensis
JUB59]
gi|344047896|gb|EGV43515.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bizionia argentinensis
JUB59]
Length = 479
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 16/172 (9%)
Query: 41 MQSILDEVR-----------ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
M+ I+DE + + K++ E +GC MN +D+EVV SIL GY+ + +
Sbjct: 1 MEKIIDETKQGETLTLEAKNTNTRKLFIESYGCAMNFSDSEVVASILYKEGYNTTQNLED 60
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK 149
AD++LV TC+IR+ AE + RL Y ++K+I+ K +K+GVLGCMAERLK LE+
Sbjct: 61 ADLVLVNTCSIRDKAEQTIRKRLEKYNAVKKINPK-----MKVGVLGCMAERLKSKFLEE 115
Query: 150 EQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
E+ +DLV GPD+YKDLP LL+ + + AINV+LS DETY DI+P ++T+G
Sbjct: 116 EKIVDLVVGPDAYKDLPNLLSEVEAGRDAINVMLSKDETYGDISPVRLNTNG 167
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 10/122 (8%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++EV L K Y E+
Sbjct: 161 VRLNTNGITAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIMEEVNDLWSKGYKEITLL 220
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADV---ILVMTCAIRE-NAEGKVWDRLRFYRSM 118
NV+ S L G K + + +D+ V C + E AE + R+RF S
Sbjct: 221 GQNVD------SYLWYGGGLKKDFEKASDMEKATAVNFCKLLELCAEAQPNMRIRFSTSN 274
Query: 119 KQ 120
Q
Sbjct: 275 PQ 276
>gi|365961356|ref|YP_004942923.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
columnare ATCC 49512]
gi|365738037|gb|AEW87130.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
columnare ATCC 49512]
Length = 483
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 111/158 (70%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
IL++ + + K++ E +GCQMN +D+E+V SIL GY+ + +EAD++LV TC+IR+
Sbjct: 15 ILEQNQKNTKKMFIESYGCQMNFSDSEIVASILTEQGYNTTQNLQEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL Y ++K+++ +K+GVLGCMAERLK+ LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTVRKRLEQYNAIKKVNP-----TMKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+P LL+ + AINV+LS +ETY DI P ++++G
Sbjct: 130 DIPNLLSEVEEGRDAINVILSKEETYGDIQPVRLNSNG 167
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E++ L +K Y EV
Sbjct: 161 VRLNSNGVNAFVSITRGCDNMCTFCVVPFTRGRERSREPQSIIEEIQDLWNKGYKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|302804139|ref|XP_002983822.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
gi|300148659|gb|EFJ15318.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii]
Length = 469
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 5/142 (3%)
Query: 64 MNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIH 122
MN ND EVV +I+K +GY V P E+DVIL+ TCAIR+NAE K+W RL +++ +K
Sbjct: 1 MNFNDVEVVLAIMKKAGYGDIVQLPEESDVILINTCAIRDNAENKIWQRLNYFKHIKSNW 60
Query: 123 KKHRT----FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
+K+ T P K+ VLGCMAERLK+ L+E ++ +D+V GPD+Y+DLPRLL+ Q A
Sbjct: 61 RKNGTKSSRPPPKVAVLGCMAERLKEKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQA 120
Query: 179 INVLLSLDETYADITPKAVSTD 200
IN LLSL+ETYAD++P ++ D
Sbjct: 121 INTLLSLEETYADVSPVRIAKD 142
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+ +DSV+AFVSIMRGC+NMC +CIVPFTRGRERSRP++SI+ EV L ++ EV
Sbjct: 137 VRIAKDSVTAFVSIMRGCNNMCAFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLL 196
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREA 90
NVN S SG+S + E+
Sbjct: 197 GQNVN------SYCDLSGFSAIYRTNES 218
>gi|302814840|ref|XP_002989103.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
gi|300143204|gb|EFJ09897.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii]
Length = 507
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 5/142 (3%)
Query: 64 MNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIH 122
MN ND EVV +I+K +GY V P E+DVIL+ TCAIR+NAE K+W RL +++ +K
Sbjct: 1 MNFNDLEVVLAIMKKAGYGDIVQLPEESDVILINTCAIRDNAENKIWQRLNYFKHIKSNW 60
Query: 123 KKHRT----FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
+K+ T P K+ VLGCMAERLK+ L+E ++ +D+V GPD+Y+DLPRLL+ Q A
Sbjct: 61 RKNGTKSSRPPPKVAVLGCMAERLKEKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQA 120
Query: 179 INVLLSLDETYADITPKAVSTD 200
IN LLSL+ETYAD++P ++ D
Sbjct: 121 INTLLSLEETYADVSPVRIAKD 142
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+ +DSV+AFVSIMRGC+NMC++CIVPFTRGRERSRP++SI+ EV L ++ EV
Sbjct: 137 VRIAKDSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLL 196
Query: 63 QMNVN 67
NVN
Sbjct: 197 GQNVN 201
>gi|110638221|ref|YP_678430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cytophaga
hutchinsonii ATCC 33406]
gi|123058778|sp|Q11U26.1|MIAB_CYTH3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110280902|gb|ABG59088.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cytophaga hutchinsonii
ATCC 33406]
Length = 481
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G+ + P ADVIL+ TC+IR+NAE KV RL
Sbjct: 39 KLYIESYGCQMNFSDSEIVMSILTEEGFDTTSTPNNADVILLNTCSIRDNAEQKVRHRLV 98
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ +K R P + +GVLGCMAERLK LLE+E+ +D+V GPD+Y+DLP L+
Sbjct: 99 HFKGLK------RNKPSMIVGVLGCMAERLKAQLLEEEKIVDMVVGPDAYRDLPNLINEV 152
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
S A+NV LS +ETYADI P +S DG
Sbjct: 153 DSGHKAVNVFLSREETYADINPLRLSGDG 181
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ D VSAFVSIMRGCDNMC++C+VP+TRGRERSR SIL+EVR L Y EV
Sbjct: 175 LRLSGDGVSAFVSIMRGCDNMCSFCVVPYTRGRERSRDAHSILNEVRELVANGYKEVTLL 234
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 235 GQNVDSYK--WS 244
>gi|295135976|ref|YP_003586652.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
SM-A87]
gi|294983991|gb|ADF54456.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda
SM-A87]
Length = 481
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMN +D+E+V SIL GY+ EAD++LV TC+IRE AE V RL
Sbjct: 25 KLFIESYGCQMNFSDSEIVASILSKEGYNTTQQLEEADLVLVNTCSIREKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+I+ +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP L+
Sbjct: 85 KYNAVKRINPN-----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS +ETY DI+P + T+G
Sbjct: 140 EGRNAVNVILSKEETYGDISPVRLQTNG 167
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSI++EV L+ + Y E+
Sbjct: 161 VRLQTNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEVNDLASRGYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|449274130|gb|EMC83413.1| CDK5 regulatory subunit-associated protein 1, partial [Columba
livia]
Length = 482
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNVNDTE+ W+IL+ SGY + EADVIL++TC++RE AE +W+RL+
Sbjct: 1 VYLETYGCQMNVNDTEIAWAILQKSGYVRTRDLAEADVILLVTCSVREKAEQTIWNRLQH 60
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+++K + R PL+IG+LGCMAERLK+ +L +E+ +D+VAGPD+
Sbjct: 61 LKALKARRQPARP-PLRIGILGCMAERLKEEILHREKLVDIVAGPDAXX------XXXXX 113
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
NVLLSLDETYADI P S G
Sbjct: 114 XXXXANVLLSLDETYADILPVQTSAGG 140
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL EVR LSD+ EV
Sbjct: 132 LPVQTSAGGTTAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILQEVRMLSDQGVKEVT 191
Query: 61 GCQMNVND----TEVVWSILKSSGYSK 83
NVN +EV + + G S+
Sbjct: 192 LLGQNVNSFRDTSEVQFQSTAAPGLSR 218
>gi|383451510|ref|YP_005358231.1| TRNA-i(6)A37 modification enzyme MiaB [Flavobacterium indicum
GPTSA100-9]
gi|380503132|emb|CCG54174.1| Probable TRNA-i(6)A37 modification enzyme MiaB [Flavobacterium
indicum GPTSA100-9]
Length = 483
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 108/158 (68%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ D++ K++ E +GCQMN +D+E+V SIL GY+ + EAD++LV TC+IR+
Sbjct: 16 VQDQIEGNQKKLFIESYGCQMNFSDSEIVASILSEQGYNTTQNLEEADLVLVNTCSIRDK 75
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL+ Y ++K+I+ +K+GVLGCMAERLK+ L++E+ +D+V GPD+YK
Sbjct: 76 AEQTVRKRLQEYNAIKKINPS-----MKVGVLGCMAERLKEKFLDEEKIVDMVVGPDAYK 130
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+P LL + AINV+LS +ETY DI P +S++G
Sbjct: 131 DIPNLLKEVEEGRDAINVILSKEETYGDIQPVRLSSNG 168
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VSAFVSI RGCDNMCT+C+VPFTRGRERSR +SI+ E++ L DK + EV
Sbjct: 162 VRLSSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSREPESIIQEIQDLWDKGFKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|340622497|ref|YP_004740949.1| tRNA-i(6)A37 methylthiotransferase [Capnocytophaga canimorsus Cc5]
gi|339902763|gb|AEK23842.1| tRNA-i(6)A37 methylthiotransferase [Capnocytophaga canimorsus Cc5]
Length = 481
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 36 ERSRPMQS-ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
+ S+ QS +L E K+Y E +GCQMN +D+E+V SIL GY+ EAD++L
Sbjct: 6 DESKQGQSLVLKENTNNHKKLYIESYGCQMNFSDSEIVASILSEQGYNTTQTLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQAL 153
V TC+IRE AE + RL + ++K R P +K+GVLGCMAERLK + LE+E+ +
Sbjct: 66 VNTCSIREKAEQTIRKRLEQFNAIK------RNRPAMKVGVLGCMAERLKHAFLEEEKIV 119
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+V GPD+YKDLP LL + A+NV+LS DETYADI+P ++++G
Sbjct: 120 DMVVGPDAYKDLPNLLQEVEGGREAVNVILSKDETYADISPIRLNSNG 167
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E++ L ++ + E+
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPFSILNEIKDLEERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|85818018|gb|EAQ39186.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134]
Length = 484
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 107/150 (71%), Gaps = 4/150 (2%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN D+EVV SIL + GY+ + EAD++LV TC+IRE AE V R
Sbjct: 23 SKKLFIESYGCQMNFADSEVVASILANEGYNTTQNLEEADLVLVNTCSIREKAEVTVRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L Y+++K+ K++ T +K+GVLGCMAERLK LE+E+ +DLV GPD+YKD+P LL+
Sbjct: 83 LEKYQAVKR--KQNPT--MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSE 138
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS +ETY DI+P + T+G
Sbjct: 139 VEEGRDAVNVILSKEETYGDISPVRLQTNG 168
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV+ L+++ + E+
Sbjct: 162 VRLQTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVQDLANRGFKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|189502025|ref|YP_001957742.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
5a2]
gi|229890438|sp|B3ES11.1|MIAB_AMOA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|189497466|gb|ACE06013.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ +Y E +GCQMN+ D+EVV SIL+ G+ + +ADVI + TCAIR+ AE V
Sbjct: 32 TITRNLYVESYGCQMNIADSEVVVSILRPHGFEITDTYEKADVIFINTCAIRDKAEQTVR 91
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL + +K+ R L IGVLGCMAERLK++LLE+E+ +DLVAGPD+Y+DLPRLL
Sbjct: 92 KRLSQFNQLKR-----RNPDLVIGVLGCMAERLKQTLLEEEKLVDLVAGPDAYRDLPRLL 146
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
A S AIN LS +ETYADI+P ++++G
Sbjct: 147 ATVDSGHKAINTFLSREETYADISPIRLNSNG 178
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E L ++ Y EV
Sbjct: 172 IRLNSNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSIVKEATELFEQGYREVTLL 231
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 232 GQNVDSYK--WS 241
>gi|150026019|ref|YP_001296845.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
psychrophilum JIP02/86]
gi|229890536|sp|A6H119.1|MIAB_FLAPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149772560|emb|CAL44043.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 481
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
IL+ + K++ E +GC MN +D+E+V SIL +GY+ N EAD++LV TC+IR+
Sbjct: 15 ILENKPENTKKLFIESYGCAMNFSDSEIVASILSGNGYNTTNVLEEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE + RL Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTIRKRLEKYNAVKRINPK-----MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP LL + AINV+LS DETY DI+P + ++G
Sbjct: 130 DLPNLLNEVEEGRDAINVILSKDETYGDISPVRLMSNG 167
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A V+I RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L K + E+
Sbjct: 161 VRLMSNGITALVAITRGCDNMCTFCVVPFTRGRERSREPQSIMAEIQDLWHKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|229495400|ref|ZP_04389135.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
endodontalis ATCC 35406]
gi|229317843|gb|EEN83741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas
endodontalis ATCC 35406]
Length = 462
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE + K++ E +GCQMNV D+EVV +I++++GY + P +AD IL+ TC++RENAE
Sbjct: 4 DESLQTTKKIHIETYGCQMNVADSEVVAAIMETAGYEMSDSPDDADAILINTCSVRENAE 63
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
KV +RL Y +++ H K P IGVLGCMAER+++ L+EK A D+VAGPD+Y DL
Sbjct: 64 KKVLNRLEHYNQLRRKHGK----PSIIGVLGCMAERVRQELIEKHGA-DIVAGPDAYNDL 118
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITP 194
P L A + + AIN+ LS ETY D+ P
Sbjct: 119 PNLFAAVETGEKAINIDLSRTETYRDVIP 147
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ FVSIMRGCDN CTYCIVP+TRG ERSR ++SIL E+ + + Y EV NVN
Sbjct: 155 ITGFVSIMRGCDNYCTYCIVPYTRGHERSREVESILREIDHMVELGYREVTLLGQNVN 212
>gi|340617148|ref|YP_004735601.1| MiaB-like tRNA modifying protein [Zobellia galactanivorans]
gi|339731945|emb|CAZ95213.1| MiaB-like tRNA modifying protein [Zobellia galactanivorans]
Length = 481
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 110/157 (70%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+++ A S K+Y E +GCQMN +D+E+V SIL + G++ + +EAD++LV TC+IRE A
Sbjct: 16 IEDKNANSKKLYIESYGCQMNFSDSEIVASILANEGFNTTQNLKEADLVLVNTCSIREKA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E V RL + ++K+ + H +K+GVLGCMAERLK LE+E+ +D+V GPD+YKD
Sbjct: 76 ELTVRKRLEKFNAIKK-DRPH----MKVGVLGCMAERLKHQFLEEEKIVDMVVGPDAYKD 130
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP L+ ++A+NV+LS DETY D+ P ++T+G
Sbjct: 131 LPNLIQEIDEGRSAVNVILSKDETYGDVAPVRLNTNG 167
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI+DEV L K + E+
Sbjct: 161 VRLNTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIDEVNDLWSKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|381187469|ref|ZP_09895033.1| tRNA-i(6)A37 methylthiotransferase [Flavobacterium frigoris PS1]
gi|379650597|gb|EIA09168.1| tRNA-i(6)A37 methylthiotransferase [Flavobacterium frigoris PS1]
Length = 481
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 111/167 (66%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQS-ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S+ +S +L+ + K++ E +GC MN +D+E+V SIL +GY+ EAD++L
Sbjct: 6 EESKQGESLVLENKPGNTKKLFIESYGCAMNFSDSEIVASILSGNGYNTTQVLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
V TC+IR+ AE V RL Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +D
Sbjct: 66 VNTCSIRDKAEQTVRKRLEKYNAVKRINPK-----MKVGVLGCMAERLKTQFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LV GPD+YKDLP LL + AINV+LS DETY DI+P + ++G
Sbjct: 121 LVVGPDAYKDLPNLLQEVEEGRNAINVILSKDETYGDISPVRLMSNG 167
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L DK + E+
Sbjct: 161 VRLMSNGITALVSITRGCDNMCTFCVVPFTRGRERSREPQSIMKEIQDLWDKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|336172675|ref|YP_004579813.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Lacinutrix sp. 5H-3-7-4]
gi|334727247|gb|AEH01385.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Lacinutrix sp. 5H-3-7-4]
Length = 479
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 110/166 (66%), Gaps = 5/166 (3%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E+ + +LD+ + K++ E +GC MN +D+E+V SIL GY+ + +AD++LV
Sbjct: 7 EKKQGNTLVLDQNDKNTKKLFIESYGCAMNFSDSEIVASILDEQGYNTTSKLEDADLVLV 66
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC+IR+ AE V RL Y ++K+ + K +K+GVLGCMAERLK LE+E+ +DL
Sbjct: 67 NTCSIRDKAEQTVRKRLEKYNAVKRTNPK-----MKVGVLGCMAERLKSKFLEEEKIVDL 121
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
V GPD+YKDLP LLA AINV+LS DETY D++P ++++G
Sbjct: 122 VVGPDAYKDLPNLLAEVEEGHDAINVVLSKDETYGDVSPVRLNSNG 167
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 10/122 (8%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E+ L K Y E+
Sbjct: 161 VRLNSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEINDLWSKGYKEITLL 220
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVI----LVMTCAIRENAEGKVWDRLRFYRSM 118
NV D+ + + +SK + ++A + L+ C AE + R+RF S
Sbjct: 221 GQNV-DSYLWYGGGLKKDFSKASDIQKATAVDFSKLLQIC-----AEAQPKMRIRFSTSN 274
Query: 119 KQ 120
Q
Sbjct: 275 PQ 276
>gi|408490329|ref|YP_006866698.1| tRNA-i(6)A37 methylthiotransferase MaiB [Psychroflexus torquis ATCC
700755]
gi|408467604|gb|AFU67948.1| tRNA-i(6)A37 methylthiotransferase MaiB [Psychroflexus torquis ATCC
700755]
Length = 485
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 101/147 (68%), Gaps = 5/147 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y E +GC MN +D+E+V SIL GY+ N EAD++LV TC+IR+ AE V RL
Sbjct: 26 LYIESYGCAMNFSDSEIVASILNKEGYNTTNELSEADLVLVNTCSIRDKAEQTVRKRLEK 85
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y ++K+I+ +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP LL S
Sbjct: 86 YNAVKKINPS-----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLEEVES 140
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS +ETY DI+P + ++G
Sbjct: 141 GRDAINVILSKEETYGDISPVRLQSNG 167
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+CIVPFTRGRERSR SI+DEV L K + E+
Sbjct: 161 VRLQSNGVSAFVSITRGCDNMCTFCIVPFTRGRERSRDPLSIIDEVNDLWSKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|429746821|ref|ZP_19280144.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 380 str. F0488]
gi|429164993|gb|EKY07078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 380 str. F0488]
Length = 527
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 106/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + EAD++L+ TC++RE AE + R
Sbjct: 68 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTIDEADLVLINTCSVREKAEQTIRKR 127
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K S LE+E+ +D+V GPD+YKDLP LL
Sbjct: 128 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHSFLEEEKIVDMVVGPDAYKDLPNLLEE 182
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADITP ++++G
Sbjct: 183 VEEGREAVNVILSKDETYADITPIRLNSNG 212
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 206 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 265
Query: 63 QMNVN 67
NV+
Sbjct: 266 GQNVD 270
>gi|163787659|ref|ZP_02182106.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
ALC-1]
gi|159877547|gb|EDP71604.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium
ALC-1]
Length = 481
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 109/166 (65%), Gaps = 5/166 (3%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E+ + ILD K++ E +GC MN +D+E+V SIL G++ + EAD++LV
Sbjct: 7 EKKQGETLILDHKEGNKRKLFIESYGCAMNFSDSEIVASILSDQGFNTTKNLEEADLVLV 66
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC+IR+ AE V RL+ Y +K+ + K +K+GVLGCMAERLK LE+E+ +DL
Sbjct: 67 NTCSIRDKAEQTVRKRLQQYNVVKRTNPK-----MKVGVLGCMAERLKTKFLEEEKIVDL 121
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
V GPD+YKDLP LLA + AINV+LS +ETY DI+P ++T+G
Sbjct: 122 VVGPDAYKDLPNLLAEVDEGRDAINVILSKEETYGDISPVRLNTNG 167
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E+ L K + E+
Sbjct: 161 VRLNTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEINDLWAKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|390953568|ref|YP_006417326.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Aequorivita sublithincola DSM 14238]
gi|390419554|gb|AFL80311.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Aequorivita sublithincola DSM 14238]
Length = 483
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GC MN +D+E+V SIL GY+ N EAD++LV TC+IR+ AE + R
Sbjct: 25 SKKLYIESYGCAMNFSDSEIVASILADQGYNTTNLLEEADLVLVNTCSIRDKAEQTIRKR 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L Y ++K+I+ K +K+GVLGCMAERLK+ LE+E+ +DLV GPD+YKD+P LL
Sbjct: 85 LEKYNAVKRINPK-----MKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYKDIPNLLKE 139
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS +ETY DI+P + +G
Sbjct: 140 VEEGRDAVNVILSKEETYGDISPVRLGGNG 169
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A+VSI RGCDNMCT+C+VPFTRGRERSR QSIL E+ L++K Y E+
Sbjct: 163 VRLGGNGITAYVSITRGCDNMCTFCVVPFTRGRERSRDPQSILHEIDDLAEKNYKEITLL 222
Query: 63 QMNVN 67
NV+
Sbjct: 223 GQNVD 227
>gi|402832215|ref|ZP_10880868.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. CM59]
gi|402278121|gb|EJU27186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. CM59]
Length = 481
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 105/148 (70%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ + +EAD++L+ TC++RE AE + RL
Sbjct: 25 KLYIESYGCQMNFSDSEIVASILHKVGFNTTENLQEADLVLINTCSVREKAEQTIRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++K+ HK +K+GVLGCMAERLK LE+E +DLV GPD+YKDLP LL
Sbjct: 85 QFNAVKR-HKP----AMKVGVLGCMAERLKHQFLEEEHIVDLVVGPDAYKDLPNLLEEVD 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ + A+NVLLS DETYADI+P ++++G
Sbjct: 140 NGRDAVNVLLSRDETYADISPIRLNSNG 167
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SI+ E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPHSIIHEIEDLWQRGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|374598833|ref|ZP_09671835.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Myroides odoratus DSM
2801]
gi|423322975|ref|ZP_17300817.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CIP 103059]
gi|373910303|gb|EHQ42152.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Myroides odoratus DSM
2801]
gi|404609996|gb|EKB09354.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CIP 103059]
Length = 483
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
L++ R + K++ E +GCQMN +D+E+V SIL +GY+ N+ EAD++LV TC+IR+ A
Sbjct: 16 LEQNRDNTKKLFIESYGCQMNFSDSEIVASILSDAGYNTTNNLEEADLVLVNTCSIRDKA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E V RL Y +K+ + +K+GVLGCMAERLK LE+E+ +D+V GPD+YKD
Sbjct: 76 EQTVRKRLDQYNRVKK-----KNPGMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKD 130
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP LL + AINV+LS DETY DI P + ++G
Sbjct: 131 LPNLLKEVDEGRDAINVILSKDETYGDIAPVRLQSNG 167
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR SI+ E++ L ++ + E+
Sbjct: 161 VRLQSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSREPHSIISEIQDLYERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|228471870|ref|ZP_04056641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
ATCC 33624]
gi|228276800|gb|EEK15503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis
ATCC 33624]
Length = 481
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 16/172 (9%)
Query: 41 MQSILDEVRALSD-----------KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
M+ ++DE R + K+Y E +GCQMN +D+E+V SIL G++ E
Sbjct: 1 MEKVIDETRQGAPLSLEGDAKNTRKLYIESYGCQMNFSDSEIVASILHKVGFNTTEELHE 60
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK 149
AD++L+ TC++RE AE + RL + ++K+ HK +K+GVLGCMAERLK LE+
Sbjct: 61 ADLVLINTCSVREKAEQTIRKRLEQFNAVKR-HKP----AMKVGVLGCMAERLKHQFLEE 115
Query: 150 EQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
E +DLV GPD+YKDLP LL + + A+NVLLS DETYADI+P ++++G
Sbjct: 116 EHIVDLVVGPDAYKDLPNLLQEVDNGRDAVNVLLSRDETYADISPIRLNSNG 167
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SI+ E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPHSIIHEIEELWARGFREVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|255534247|ref|YP_003094618.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Flavobacteriaceae bacterium 3519-10]
gi|255340443|gb|ACU06556.1| tRNA-i(6)A37 methylthiotransferase [Flavobacteriaceae bacterium
3519-10]
Length = 508
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 103/150 (68%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN +D+E+V SIL GY+ + EAD+IL+ TC+IRE AE V R
Sbjct: 47 SKKLFLESYGCQMNFSDSEIVASILSKQGYNTTLNHEEADLILLNTCSIREKAEQTVRMR 106
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++++K K R L +GVLGCMAERLK LE+EQ +DLV GPD+Y+DLP LL
Sbjct: 107 LSQFKNLK----KERP-NLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKE 161
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
T S + AINV+LS DETYADI P + +G
Sbjct: 162 TDSGRDAINVILSKDETYADINPVRLGGNG 191
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI++E + L + Y E+
Sbjct: 185 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIVEECKTLWENGYKEITLL 244
Query: 63 QMNVN 67
NV+
Sbjct: 245 GQNVD 249
>gi|167753302|ref|ZP_02425429.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216]
gi|167659233|gb|EDS03363.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes putredinis DSM
17216]
Length = 458
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV DTE+V +I++ GY + EADV+L+ TC+IR+NAE ++W RLR
Sbjct: 18 KLFVETYGCQMNVGDTEIVVAIMQQEGYVYTDKIEEADVVLINTCSIRDNAEQRIWGRLR 77
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ H + R L +G++GCMAERL++ LLE E +D+VAGPD+Y+DLPRL+
Sbjct: 78 -----EMAHLRRRRPGLLVGIIGCMAERLRERLLEGENPVDIVAGPDAYRDLPRLVREAG 132
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+NVLLS +ETYA+I P + +G
Sbjct: 133 EGGRGVNVLLSREETYAEIAPVRLDRNG 160
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VS++++IMRGC+N C+YC+VP+TRG ERSR Q+IL E L + Y EV
Sbjct: 154 VRLDRNGVSSYIAIMRGCNNYCSYCVVPYTRGVERSRDPQTILSEALCLFENGYREVTLL 213
Query: 63 QMNVN 67
NVN
Sbjct: 214 GQNVN 218
>gi|149277185|ref|ZP_01883327.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
gi|149232062|gb|EDM37439.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39]
Length = 482
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+E+V SILK G+ +EADV+ + TC+IRENAE +V +RL
Sbjct: 32 KLYIESYGCQMNFADSEIVASILKDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRLS 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + K+ + K L +GVLGCMAERLK LE+E+ +D+V GPD+Y+DLP+L+
Sbjct: 92 QFSAEKRKNPK-----LVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPQLIGQVE 146
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
AINVLLS +ETYADI+P ++ +G
Sbjct: 147 EGHKAINVLLSREETYADISPVRLNGNG 174
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SIMRGCDNMC++C+VPFTRGRERSR SIL E + L DK Y EV
Sbjct: 168 VRLNGNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSILAEAQDLVDKGYKEVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|386819821|ref|ZP_10107037.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Joostella marina DSM 19592]
gi|386424927|gb|EIJ38757.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Joostella marina DSM 19592]
Length = 481
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+L++ S K+Y E +GCQMN +D+E+V SIL G++ EAD++LV TC+IR+
Sbjct: 15 VLEQEVTNSRKLYIESYGCQMNFSDSEIVASILAKEGFNTTEKMEEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL + ++K+I+ K +K+GVLGCMAERLK LE+E+ +D+V GPD+YK
Sbjct: 75 AEQTVRKRLEKFNAVKRINPK-----MKVGVLGCMAERLKDKFLEEEKIVDMVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP L+ + A+NV+LS +ETY D+ P ++T+G
Sbjct: 130 DLPNLVQEIGEGKNAVNVILSKEETYGDVAPVRLNTNG 167
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV+ L+++ + E+
Sbjct: 161 VRLNTNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVKNLAERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|428170373|gb|EKX39298.1| hypothetical protein GUITHDRAFT_160013 [Guillardia theta CCMP2712]
Length = 476
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 98/139 (70%), Gaps = 3/139 (2%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN +D+E+V SI++SSGY +V P A+V++ TCA+RENAE KVW+RL+ +SM H
Sbjct: 1 MNSSDSEIVASIMQSSGYHRVEQPENANVLMFNTCAVRENAEQKVWERLKKIKSMLDHHP 60
Query: 124 KHR-TFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL 182
R +GVLGCMAERLKK LLE ++ +D VAGPD+Y+D+P LL S Q A+NV
Sbjct: 61 DRRWRQRASVGVLGCMAERLKKKLLETDRLVDFVAGPDAYRDIPNLLNTVESGQKAMNVQ 120
Query: 183 LSLDETYADITPKAVSTDG 201
LSLDETYAD+ P V DG
Sbjct: 121 LSLDETYADVAP--VRYDG 137
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + +SA++SIMRGC+NMC+YC+VPFTRGRERSR ++SI++EV+ LS K Y E+
Sbjct: 133 VRYDGNGISAYISIMRGCNNMCSYCVVPFTRGRERSRTLESIVNEVKDLSAKGYREITLL 192
Query: 63 QMNVN 67
NVN
Sbjct: 193 GQNVN 197
>gi|363581288|ref|ZP_09314098.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Flavobacteriaceae bacterium HQM9]
Length = 482
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMN +D+EVV SIL ++G++ N +AD++LV TC+IR+ AE V RL
Sbjct: 25 KLFIESYGCQMNFSDSEVVASILATNGFNTTNKLEDADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K +++ +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP LL
Sbjct: 85 KYNAVK----RNQNPKMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLNEVD 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI+P + ++G
Sbjct: 141 EGRDAVNVILSKDETYGDISPVRLQSNG 168
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSA VSI RGCDNMCT+C+VPFTRGRERSR QSI+ EV L +K Y EV
Sbjct: 162 VRLQSNGVSALVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIQEVTDLVEKGYKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|163753931|ref|ZP_02161054.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
gi|161326145|gb|EDP97471.1| 2-methylthioadenine synthetase [Kordia algicida OT-1]
Length = 481
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 106/158 (67%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+L E + K+Y E +GCQMN D+EVV SIL G++ N EAD++LV TC+IR+
Sbjct: 15 VLAENPKNTRKLYIESYGCQMNFADSEVVASILAKEGFNTTNRLEEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL Y ++K+ + K +K+GVLGCMAERLK LE+E+ +D+V GPD+YK
Sbjct: 75 AEQTVRKRLEKYNAVKRHNPK-----MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP L+ + A+NV+LS +ETY DI+P ++T+G
Sbjct: 130 DLPNLIQEIDDGRNAVNVVLSKEETYGDISPVRLNTNG 167
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSIL+E++ LSDK + E+
Sbjct: 161 VRLNTNGINALVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEIQELSDKNFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|409123764|ref|ZP_11223159.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gillisia sp.
CBA3202]
Length = 481
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GC MN +D+E+V SIL+ G++ + +AD++LV TC+IR+ AE V RL+
Sbjct: 25 KLFIESYGCAMNFSDSEIVASILQKEGFNTTQNLEDADLVLVNTCSIRDKAEQTVRKRLQ 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP L++
Sbjct: 85 KYNAVKRINPK-----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLISEVE 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI+P + ++G
Sbjct: 140 EGRNAVNVILSKDETYGDISPVRLQSNG 167
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSA VSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV L+ K + E+
Sbjct: 161 VRLQSNGVSALVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVNDLASKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|403353811|gb|EJY76448.1| RNA modification enzyme, MiaB family [Oxytricha trifallax]
Length = 607
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 12/149 (8%)
Query: 53 DKVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+K YF E GCQMNV DTE+V SI++S+G+ + ++ADV+LV TCAIRENAE K+W++
Sbjct: 110 NKTYFIETHGCQMNVADTEIVQSIMESAGFEHTDAMQQADVVLVNTCAIRENAEKKIWNK 169
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ + Q+ K ++ +GVLGCMAERLK LE + +DLVAGPDSY+DLPRL+ +
Sbjct: 170 IE--SNYSQVKKNNKE--AIVGVLGCMAERLKDKFLEN-KTVDLVAGPDSYRDLPRLIKI 224
Query: 172 TYS------NQTAINVLLSLDETYADITP 194
S ++ AINV LS DETYADI P
Sbjct: 225 LESKHNSSNDEQAINVQLSFDETYADILP 253
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 51/67 (76%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ VR +++ + A++SIMRGC+NMC++CIVPFTRGRERSRP+ SI DEV+ L D+ E+
Sbjct: 252 LPVRKDKNKLHAWISIMRGCNNMCSFCIVPFTRGRERSRPVHSIEDEVKLLRDQGIREIT 311
Query: 61 GCQMNVN 67
NVN
Sbjct: 312 LLGQNVN 318
>gi|374596721|ref|ZP_09669725.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gillisia limnaea DSM
15749]
gi|373871360|gb|EHQ03358.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gillisia limnaea DSM
15749]
Length = 476
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
IL+ + K++ E +GCQMN +D+EVV SIL G++ + EAD++LV TC+IR+
Sbjct: 15 ILEPKTENTRKLFIESYGCQMNFSDSEVVASILLKEGFNTTQNLEEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTVRKRLEKYNAVKRINPK-----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP L+ + A+NV+LS +ETY DI+P + ++G
Sbjct: 130 DLPNLIKEVEEGRNAVNVILSKEETYGDISPVRLQSNG 167
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EVR L++K Y E+
Sbjct: 161 VRLQSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVRDLAEKGYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|256424882|ref|YP_003125535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chitinophaga
pinensis DSM 2588]
gi|256039790|gb|ACU63334.1| RNA modification enzyme, MiaB family [Chitinophaga pinensis DSM
2588]
Length = 473
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 103/158 (65%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ E + + K Y E +GCQMN ND+E+V SILK G+ + EA ++L+ TC+IRE
Sbjct: 21 VAGESQTYTKKFYIESYGCQMNFNDSEIVASILKEEGFGPTRNVEEASLVLLNTCSIREK 80
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL +R +KQ R L +GVLGCMAERLK LLE+E+ +D+V GPD+Y+
Sbjct: 81 AETTVRKRLTEFRKIKQ-----RNPELLVGVLGCMAERLKAKLLEEEKLVDMVVGPDAYR 135
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP L+ + Q A+NVLLS +ETY DI+P + ++G
Sbjct: 136 TLPALIEEAETGQKAVNVLLSREETYGDISPVRLDSNG 173
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + V+AFVSIMRGC+NMC++C+VPFTRGRERSR SIL E + ++ Y EV
Sbjct: 167 VRLDSNGVTAFVSIMRGCNNMCSFCVVPFTRGRERSRDKASILQEATDMFNRGYREVTLL 226
Query: 63 QMNVN 67
NV+
Sbjct: 227 GQNVD 231
>gi|326334454|ref|ZP_08200666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325693421|gb|EGD35348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 481
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 112/172 (65%), Gaps = 16/172 (9%)
Query: 41 MQSILDEVRA------LSD-----KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
M+ ++DE R SD K+Y E +GCQMN +D+E+V SIL G++ + E
Sbjct: 1 MEKVIDETRQGAPLTLESDTKNTRKLYIESYGCQMNFSDSEIVASILHKEGFNTTDKLHE 60
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK 149
AD+IL+ TC++RE AE + RL + ++K+ HK +++GVLGCMAERLK LE+
Sbjct: 61 ADLILINTCSVREKAEQTIRKRLEQFNTVKR-HKP----AMRVGVLGCMAERLKHKFLEE 115
Query: 150 EQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
E +DLV GPD+YKDLP LL + + A+NV LS DETYADI+P ++++G
Sbjct: 116 EHIVDLVVGPDAYKDLPNLLTEVDNGRDAVNVQLSKDETYADISPIRLNSNG 167
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SI++E+ L + Y E+
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPHSIINEIAELQQRGYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|436835493|ref|YP_007320709.1| RNA modification enzyme, MiaB family [Fibrella aestuarina BUZ 2]
gi|384066906|emb|CCH00116.1| RNA modification enzyme, MiaB family [Fibrella aestuarina BUZ 2]
Length = 472
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 113/157 (71%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+DE+ ++Y E +GCQMN +D+E+V ++++++G++ + +AD+I + TCAIR+NA
Sbjct: 25 VDELVDGKKRLYIESYGCQMNFSDSEIVAAVMRNAGFATTSTAEDADLIFLNTCAIRDNA 84
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E KV +RL+ ++K+ + L +G+LGCMAERLK LLE+E+ +D+VAGPD+Y+D
Sbjct: 85 EQKVRNRLKQLNTLKK-----KKPELMVGMLGCMAERLKTKLLEEEKIVDIVAGPDAYRD 139
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+P+L+ + Q A+NV LS +ETYADI P ++++G
Sbjct: 140 IPKLVEEAETGQKAVNVFLSREETYADIAPIRLNSNG 176
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E L Y EV
Sbjct: 170 IRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVREAEQLFADGYKEVTLL 229
Query: 63 QMNVN 67
NV+
Sbjct: 230 GQNVD 234
>gi|188995206|ref|YP_001929458.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
gingivalis ATCC 33277]
gi|229890595|sp|B2RKG6.1|MIAB_PORG3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188594886|dbj|BAG33861.1| putative SAM/TRAM family methylase protein [Porphyromonas
gingivalis ATCC 33277]
Length = 465
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 101/141 (71%), Gaps = 3/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ GYS ++ EAD ILV TC++R+NAE KV +RL
Sbjct: 19 KLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRLA 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Y S+++ K+ + L IGVLGCMAER+K+ L+ +E +D+VAGPDSY DLP L+
Sbjct: 79 YYHSLRK--KRRASSRLVIGVLGCMAERVKEELI-REHHVDVVAGPDSYLDLPNLVGAAE 135
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS+ ETY D+ P
Sbjct: 136 QGEKAINVELSMQETYKDVMP 156
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +++ ++ FVSIMRGC+N C+YCIVP+TRGRERSR ++SIL+EVR L K + EV
Sbjct: 155 MPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVT 214
Query: 61 GCQMNVN 67
NVN
Sbjct: 215 LLGQNVN 221
>gi|260061724|ref|YP_003194804.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Robiginitalea
biformata HTCC2501]
gi|88785856|gb|EAR17025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Robiginitalea biformata
HTCC2501]
Length = 481
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ + EAD+ILV TC+IRE AE V RL
Sbjct: 25 KLYIESYGCQMNFSDSEIVASILGQEGFNTTSRLEEADLILVNTCSIREKAEQTVRKRLV 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K+ + +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+
Sbjct: 85 HFNGLKKSNPG-----VKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLVREVD 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q A+NV+LS +ETYAD++P + ++G
Sbjct: 140 SGQNAVNVILSKEETYADVSPVRLGSNG 167
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL EV L Y EV
Sbjct: 161 VRLGSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILREVGDLWANGYKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|89891819|ref|ZP_01203321.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
gi|89515974|gb|EAS18639.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7]
Length = 490
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ N EAD++LV TC+IR+ AE V RL
Sbjct: 25 KLYIESYGCQMNFSDSEIVASILSKEGFNTTNVLEEADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y +K+ + +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+A
Sbjct: 85 KYNRVKERQNPN----MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLVAEID 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS +ETY DI P ++T+G
Sbjct: 141 EGRDAVNVILSKEETYGDIAPVRLNTNG 168
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+E+ L+ K + EV
Sbjct: 162 VRLNTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEIADLTSKGFKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|6841556|gb|AAF29131.1|AF161516_1 HSPC167 [Homo sapiens]
Length = 586
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLP 166
D+Y+DLP
Sbjct: 206 DAYRDLP 212
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 14/64 (21%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIV------------PFTRGRERSRPMQSILDEVRAL 51
R + SAFVSIMRGCDNMC+YCIV P +RG E + + L EV L
Sbjct: 242 RQGASATSAFVSIMRGCDNMCSYCIVLSPGAGRGVGLLPHSRGSEEA--FLAGLKEVTLL 299
Query: 52 SDKV 55
V
Sbjct: 300 GQNV 303
>gi|402495018|ref|ZP_10841752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquimarina
agarilytica ZC1]
Length = 482
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMN +D+EVV SIL ++G++ N +AD++LV TC+IR+ AE V RL
Sbjct: 25 KLFIESYGCQMNFSDSEVVASILANNGFNTTNKLEDADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K +++ +K+GVLGCMAERLK+ L++E+ +DLV GPD+YKDLP LL
Sbjct: 85 KYNAVK----RNQNPKMKVGVLGCMAERLKEKFLDEEKIVDLVVGPDAYKDLPNLLNEVD 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI+P + ++G
Sbjct: 141 EGRDAVNVILSKDETYGDISPVRLQSNG 168
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSA VSI RGCDNMCT+C+VPFTRGRERSR QSI+ EV L K Y EV
Sbjct: 162 VRLQSNGVSALVSITRGCDNMCTFCVVPFTRGRERSRDPQSIMQEVADLISKGYKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|86143888|ref|ZP_01062256.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
MED217]
gi|85829595|gb|EAQ48058.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis
MED217]
Length = 481
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+L+ A S K++ E +GCQMN +D+E+V SIL GY+ +AD++LV TC+IR+
Sbjct: 15 VLEPQAANSKKLFIESYGCQMNFSDSEIVASILAKEGYNTTQQLEDADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE V RL Y ++K+ + +K+GVLGCMAERLK LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTVRKRLEKYNAVKKDNPT-----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP LL + AINV+LS +ETY DI P + ++G
Sbjct: 130 DLPNLLGEVEEGRDAINVILSKEETYGDIAPVRLQSNG 167
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++EV L+ K + EV
Sbjct: 161 VRLQSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIVEEVNDLAAKGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|256820151|ref|YP_003141430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Capnocytophaga
ochracea DSM 7271]
gi|256581734|gb|ACU92869.1| RNA modification enzyme, MiaB family [Capnocytophaga ochracea DSM
7271]
Length = 482
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + EAD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|429756483|ref|ZP_19289075.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 324 str. F0483]
gi|429171224|gb|EKY12858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 324 str. F0483]
Length = 482
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + EAD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|313674871|ref|YP_004052867.1| tRNA-i(6)a37 thiotransferase enzyme miab [Marivirga tractuosa DSM
4126]
gi|312941569|gb|ADR20759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marivirga tractuosa DSM
4126]
Length = 488
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 5/166 (3%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E S +Q +E S K+Y E +GCQMN +D+E+V SI+K +G+ N ADVI +
Sbjct: 18 EESCAVQVSKEENTGKSRKLYIESYGCQMNFSDSEIVTSIMKENGFDTTNDFNNADVIFL 77
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC+IRE AE V RL + +K R ++IGVLGCMAERLK LLE+E+ +D+
Sbjct: 78 NTCSIREKAELTVRKRLTDFNKVKA-----RKPEMQIGVLGCMAERLKTKLLEEEKIVDI 132
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
VAGPDSY+DLP L+ + A+N LS +ETYADI+P ++++G
Sbjct: 133 VAGPDSYRDLPNLVKTVDDGEKAVNTFLSREETYADISPVRLNSNG 178
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L DK Y EV
Sbjct: 172 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPFSIVQEAQDLFDKGYREVTLL 231
Query: 63 QMNVN 67
NV+
Sbjct: 232 GQNVD 236
>gi|332292317|ref|YP_004430926.1| MiaB family RNA modification protein [Krokinobacter sp. 4H-3-7-5]
gi|332170403|gb|AEE19658.1| RNA modification enzyme, MiaB family [Krokinobacter sp. 4H-3-7-5]
Length = 483
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMN D+EVV SIL + GY+ EAD++LV TC+IRE AE V R
Sbjct: 23 TKKLFIESYGCQMNFADSEVVASILANEGYNTTQILEEADLVLVNTCSIREKAEVTVRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L Y+++K+ + +K+GVLGCMAERLK LE+E+ +DLV GPD+YKD+P LL+
Sbjct: 83 LEKYQAVKRKQNPN----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSE 138
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS +ETY DI+P + T+G
Sbjct: 139 VEEGRNAVNVILSKEETYGDISPVRLLTNG 168
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV+ L++K + E+
Sbjct: 162 VRLLTNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVQDLAEKGFKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|420149796|ref|ZP_14656964.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 335 str. F0486]
gi|394752993|gb|EJF36598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 335 str. F0486]
Length = 482
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + EAD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|375013422|ref|YP_004990410.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Owenweeksia hongkongensis DSM 17368]
gi|359349346|gb|AEV33765.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Owenweeksia hongkongensis DSM 17368]
Length = 480
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 7/167 (4%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E +R ++++ E + K+Y E +GCQMN +D+E+V SIL+ GY + EAD++L+
Sbjct: 11 EENRQGEALVIEREGIGKKMYIESYGCQMNFSDSEIVASILQKEGYGTTKNVDEADLVLL 70
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALD 154
TC+IR+ AE V RL + MK R P +KIGVLGCMAERLK LL++E+ +D
Sbjct: 71 NTCSIRDKAEQTVRKRLTNFNKMK------RNNPGMKIGVLGCMAERLKDKLLDEEKLVD 124
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+V GPD+Y+DLP L+ + A+NVLLS +ETYAD++P + +G
Sbjct: 125 MVVGPDAYRDLPNLVKELDEGRKAVNVLLSKEETYADVSPVRLGQNG 171
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL ++ VSAFVSI RGCDNMCT+C+VPFTRGRERSR Q+IL+E L++ Y E+
Sbjct: 165 VRLGQNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRNPQTILEECIDLAENGYKEITLL 224
Query: 63 QMNVN 67
NV+
Sbjct: 225 GQNVD 229
>gi|146299610|ref|YP_001194201.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
johnsoniae UW101]
gi|229890535|sp|A5FIU2.1|MIAB_FLAJ1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|146154028|gb|ABQ04882.1| RNA modification enzyme, MiaB family [Flavobacterium johnsoniae
UW101]
Length = 481
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQSILDEVRAL-SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S+ +S++ E + + K++ E +GC MN +D+EVV SIL GY+ + EAD++L
Sbjct: 6 EESKQGESLVLENKPENTKKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
V TC+IR+ AE + RL Y ++K+ + K +K+GVLGCMAERLK LE+E+ +D
Sbjct: 66 VNTCSIRDKAEQTIRKRLEKYNAVKRTNPK-----MKVGVLGCMAERLKSQFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LV GPD+YKDLP LLA + AINV+LS +ETY DI+P + ++G
Sbjct: 121 LVVGPDAYKDLPNLLAEVEEGRDAINVILSKEETYGDISPVRLMSNG 167
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L K + E+
Sbjct: 161 VRLMSNGITALVSITRGCDNMCTFCVVPFTRGRERSREPQSIMAEIQDLWSKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|423132235|ref|ZP_17119885.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 12901]
gi|371639734|gb|EHO05347.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 12901]
Length = 482
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 7/158 (4%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
L++ + + K++ E +GCQMN +D+E+V SIL + GY+ ++ EAD++LV TC+IR+ A
Sbjct: 16 LEQKQDNNKKLFIESYGCQMNFSDSEIVASILSNEGYNTTDNLEEADLVLVNTCSIRDKA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
E V RL Y +K R P +K+GVLGCMAERLK LE+E+ +D+V GPD+YK
Sbjct: 76 EQTVRKRLDQYNQVK------RKNPGMKVGVLGCMAERLKAKFLEEEKIVDMVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP LL + AINV+LS DETY DI+P + ++G
Sbjct: 130 DLPNLLKDVEEGRDAINVILSKDETYGDISPVRLQSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E+ L ++ + E+
Sbjct: 161 VRLQSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEITDLQERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|429751358|ref|ZP_19284278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 326 str. F0382]
gi|429180780|gb|EKY21982.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 326 str. F0382]
Length = 482
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + EAD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-TMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|440747075|ref|ZP_20926336.1| tRNA-i(6)A37 methylthiotransferase [Mariniradius saccharolyticus
AK6]
gi|436484704|gb|ELP40680.1| tRNA-i(6)A37 methylthiotransferase [Mariniradius saccharolyticus
AK6]
Length = 486
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 7/157 (4%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+IRE AE
Sbjct: 26 DENTGKSKKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDVEKADVIFLNTCSIREKAE 85
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
V +RL + ++K R P + IGVLGCMAERLK LLE+E+ +D+V GPD+Y+D
Sbjct: 86 QTVRNRLSHFNALK------RQKPEMTIGVLGCMAERLKDKLLEEEKIVDVVVGPDAYRD 139
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP L+A + IN LS +ETYADI+P ++++G
Sbjct: 140 LPNLVAAAEDGEKGINTFLSREETYADISPVRLNSNG 176
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L Y EV
Sbjct: 170 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVKEAQELFAAGYREVTLL 229
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 230 GQNVDSYK--WS 239
>gi|390443435|ref|ZP_10231227.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nitritalea
halalkaliphila LW7]
gi|389666620|gb|EIM78065.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nitritalea
halalkaliphila LW7]
Length = 483
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+IRE AE
Sbjct: 26 EEATGKSKKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDMEKADVIFLNTCSIREKAE 85
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
V RL + ++K+ + L IGVLGCMAERLK+ LLE+EQ +D+V GPD+Y+DL
Sbjct: 86 LTVRKRLVHFNALKKNKPE-----LTIGVLGCMAERLKEKLLEEEQIVDVVVGPDAYRDL 140
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L+A+ + +N LS +ETYADI P ++++G
Sbjct: 141 PNLVAVAEAGDKGVNTFLSREETYADIAPVRLNSNG 176
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E R L K Y EV
Sbjct: 170 VRLNSNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVAEARELFAKGYKEVTLL 229
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 230 GQNVDSYK--WS 239
>gi|373110959|ref|ZP_09525220.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 10230]
gi|423136029|ref|ZP_17123674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CIP 101113]
gi|423329797|ref|ZP_17307603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 3837]
gi|371639234|gb|EHO04852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CIP 101113]
gi|371641440|gb|EHO07024.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 10230]
gi|404602705|gb|EKB02392.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Myroides
odoratimimus CCUG 3837]
Length = 482
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 7/158 (4%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
L++ + + K++ E +GCQMN +D+E+V SIL + GY+ ++ EAD++LV TC+IR+ A
Sbjct: 16 LEQKQDNNKKLFIESYGCQMNFSDSEIVASILSNEGYNTTDNLEEADLVLVNTCSIRDKA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
E V RL Y +K R P +K+GVLGCMAERLK LE+E+ +D+V GPD+YK
Sbjct: 76 EQTVRKRLDQYNQVK------RKNPGMKVGVLGCMAERLKAKFLEEEKIVDMVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP LL + AINV+LS DETY DI+P + ++G
Sbjct: 130 DLPNLLKDVEEGRDAINVILSKDETYGDISPVRLQSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E+ L ++ + E+
Sbjct: 161 VRLQSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEITDLQERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|399028656|ref|ZP_10729843.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Flavobacterium sp. CF136]
gi|398073747|gb|EJL64911.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Flavobacterium sp. CF136]
Length = 481
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQSILDEVRAL-SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S+ +S++ E + + K++ E +GC MN +D+E+V SIL GY+ + EAD++L
Sbjct: 6 EESKQGESLVLENKPENTKKLFIESYGCAMNFSDSEIVASILSEGGYNTTSVLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
V TC+IR+ AE + RL Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +D
Sbjct: 66 VNTCSIRDKAEQTIRKRLEKYNAVKRINPK-----MKVGVLGCMAERLKSQFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LV GPD+YKDLP LL + AINV+LS +ETY DI+P + ++G
Sbjct: 121 LVVGPDAYKDLPNLLVEVEEGRDAINVILSKEETYGDISPVRLMSNG 167
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L DK + E+
Sbjct: 161 VRLMSNGITALVSITRGCDNMCTFCVVPFTRGRERSREPQSIMREIQDLWDKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|395803365|ref|ZP_10482612.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
sp. F52]
gi|395434411|gb|EJG00358.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacterium
sp. F52]
Length = 481
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQSILDEVRAL-SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S+ +S++ E + + K++ E +GC MN +D+EVV SIL GY+ + EAD++L
Sbjct: 6 EESKQGESLVLENKPENTKKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
V TC+IR+ AE + RL Y ++K+ + K +K+GVLGCMAERLK LE+E+ +D
Sbjct: 66 VNTCSIRDKAEQTIRKRLEKYNAVKRTNPK-----MKVGVLGCMAERLKSQFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LV GPD+YKDLP LLA + AINV+LS +ETY DI+P + ++G
Sbjct: 121 LVVGPDAYKDLPNLLAEVEEGRDAINVILSKEETYGDISPVRLMSNG 167
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L +K Y EV
Sbjct: 161 VRLMSNGITALVSITRGCDNMCTFCVVPFTRGRERSREPQSIMAEIQDLWNKGYKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|372222029|ref|ZP_09500450.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Mesoflavibacter zeaxanthinifaciens S86]
Length = 486
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 105/157 (66%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
LD + + K+Y E +GCQMN +D+E+V SIL G++ EAD++LV TC+IRE A
Sbjct: 21 LDNKKDNTRKLYIESYGCQMNFSDSEIVASILAKEGFNTTQELAEADLVLVNTCSIREKA 80
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E V RL + ++K+++ +K+GVLGCMAERLK LE+E+ +D+V GPD+YKD
Sbjct: 81 EQTVRKRLEKFNAVKRVNPG-----MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKD 135
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP L+ + A+NV+LS DETY D+ P ++++G
Sbjct: 136 LPNLIQEIDEGRNAVNVILSKDETYGDVAPVRLNSNG 172
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV L +K + E+
Sbjct: 166 VRLNSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRNPQSILEEVNDLWNKGFKEITLL 225
Query: 63 QMNVN 67
NV+
Sbjct: 226 GQNVD 230
>gi|399925429|ref|ZP_10782787.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Myroides
injenensis M09-0166]
Length = 482
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMN +D+E+V SIL +GY+ + EAD++LV TC+IR+ AE V R
Sbjct: 23 TKKLFIESYGCQMNFSDSEIVASILSDAGYNTTTNLEEADLVLVNTCSIRDKAEQTVRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L Y Q+ KK+ +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LDQYN---QVKKKNPG--MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLLKD 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS DETY DI+P + ++G
Sbjct: 138 VEEGRDAINVILSKDETYGDISPVRLQSNG 167
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSI++E++ L+++ + E+
Sbjct: 161 VRLQSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEIKDLNERGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|392390939|ref|YP_006427542.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Ornithobacterium rhinotracheale DSM 15997]
gi|390522017|gb|AFL97748.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Ornithobacterium rhinotracheale DSM 15997]
Length = 477
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMN +D+E+V SIL G+S N EAD+IL+ TC+IRE AE V RL
Sbjct: 26 KLFLESYGCQMNFSDSEIVASILSKEGFSTTNVLEEADLILLNTCSIREKAEQTVRKRLN 85
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++K+ + K L +GVLGCMAERLK LE+E +DLV GPD+Y+DLP LL
Sbjct: 86 QFNAIKKTNPK-----LLVGVLGCMAERLKDKFLEEEHIVDLVVGPDAYRDLPNLLQELE 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++A+NV+LS DETYAD++P + +G
Sbjct: 141 DGRSAVNVILSKDETYADLSPVRLGGNG 168
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR SI+ E + L + Y EV
Sbjct: 162 VRLGGNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPHSIIKECKELWENGYKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|384501397|gb|EIE91888.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhizopus delemar RA
99-880]
Length = 561
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 104/151 (68%), Gaps = 6/151 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y EV+GCQMNVNDTE++ +I+ +GY + + +A V+ ++TCAIR+NAE ++W+RL+
Sbjct: 85 KFYIEVYGCQMNVNDTEILNAIMTKTGYERTSDIDQAHVVFLVTCAIRDNAEVRIWERLK 144
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
+ R K K + P +GVLGCMAERLK LLE+++ +D+V GPD Y+ +P L++L
Sbjct: 145 YLRHYKT--KINVDSPPIVGVLGCMAERLKSKLLEEDRLVDIVCGPDGYRSIPHLISLAE 202
Query: 173 --YSNQTAINVLLSLDETYADITPKAVSTDG 201
Y A NV+LS DETYAD+ P + TD
Sbjct: 203 DEYEGGVA-NVMLSADETYADVMPMRLDTDN 232
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +RL+ D+VS +VSIMRGC+NMC +CIVPFTRG ERSRPM SILDEVR LSD+ E +
Sbjct: 224 MPMRLDTDNVSGWVSIMRGCNNMCAFCIVPFTRGNERSRPMDSILDEVRYLSDQGVKEAY 283
>gi|338213813|ref|YP_004657868.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Runella
slithyformis DSM 19594]
gi|336307634|gb|AEI50736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Runella
slithyformis DSM 19594]
Length = 485
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 112/156 (71%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E+ +++ E +GCQMN +D+E+V ++++++ ++ + ADVI + TCAIR+NAE
Sbjct: 25 EELTVDKKRLFIESYGCQMNFSDSEIVAAVMRNADFATTSSEDSADVIFLNTCAIRDNAE 84
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
KV +RL++ ++K+ + L IGVLGCMAERLK LL++E+ +D+VAGPDSY+DL
Sbjct: 85 QKVRNRLQYLNNLKK-----KRPGLIIGVLGCMAERLKTKLLDEEKMVDIVAGPDSYRDL 139
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
PRL+ + Q A+NV LS +ETYADI+P ++++G
Sbjct: 140 PRLVEEAETGQKAVNVFLSREETYADISPIRLNSNG 175
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + ++A++SIMRGCDNMC++C+VP+TRGRERSR SI++E R L Y EV
Sbjct: 169 IRLNSNGITAYISIMRGCDNMCSFCVVPYTRGRERSRDPFSIVEEARLLFADGYKEVTLL 228
Query: 63 QMNVN 67
NV+
Sbjct: 229 GQNVD 233
>gi|229890670|sp|Q2RZF8.2|MIAB_SALRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 503
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 11/176 (6%)
Query: 33 RGRERSRPMQSILDEVR------ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH 86
R RE + LD V+ A +VY E +GCQMNVND+ +V S+L+ SGY
Sbjct: 16 RQREADGEVDEDLDRVKHGYDATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRD 75
Query: 87 PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSL 146
ADV+L+ TCAIRENAE K+ RL RS K+ R L +GVLGCMAERL++ L
Sbjct: 76 QAAADVVLLNTCAIRENAERKIRARLSMLRS----EKEKRDGELMLGVLGCMAERLREKL 131
Query: 147 LEKEQALDLVAGPDSYKDLPRLL-ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LE+E +D+V GPD+Y+DLP+LL + Q A+NV LS ETY DI P ++G
Sbjct: 132 LEQEDLVDVVVGPDAYRDLPQLLYEADATGQAAVNVELSKQETYEDIQPVRYDSNG 187
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + VSA+VSIMRGCDNMCT+C+VPFTRGRE SRP+ +IL EV L+++ Y EV
Sbjct: 181 VRYDSNGVSAYVSIMRGCDNMCTFCVVPFTRGREESRPVTTILSEVARLAEEGYKEVTLL 240
Query: 63 QMNVN 67
NVN
Sbjct: 241 GQNVN 245
>gi|429750565|ref|ZP_19283589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 332 str. F0381]
gi|429164536|gb|EKY06665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 332 str. F0381]
Length = 482
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQSI-LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
+ S+ QS+ L A + K+Y E +GCQMN +D+E+V SIL GY+ N EAD++L
Sbjct: 6 DESKQGQSLMLQSNTANTKKLYIESYGCQMNFSDSEIVASILAKVGYNTTNTVEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
+ TC++R+ AE + RL + ++K+ + +K+GVLGCMAER+K + LE+E+ +D
Sbjct: 66 INTCSVRDKAEQTIRKRLEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+V GPD+YKDLP LL + A+NV+LS DETYADI P ++++G
Sbjct: 121 MVVGPDAYKDLPNLLEDVEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILEEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|145343353|ref|XP_001416312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576537|gb|ABO94605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 492
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 9/147 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMNV+D++VV S+L++ G + REA LV TCA+R+NAE +VW RLR
Sbjct: 1 RVYIETYGCQMNVSDSDVVRSVLRAHGVATTEDLREATAALVNTCAVRDNAESRVWTRLR 60
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
+++K+ T +GVLGCMAERLK LLE E DLV GPD+Y+D+PRLL +
Sbjct: 61 QLKALKRDAGHALT---TVGVLGCMAERLKAKLLETEDLADLVCGPDAYRDVPRLLENST 117
Query: 173 -----YSNQTAINVLLSLDETYADITP 194
S + +NVLLSLDETYAD+ P
Sbjct: 118 RRLSDLSEEHRMNVLLSLDETYADVRP 144
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + S A+VS+MRGCDNMC +C+VPFTRGRERSRP +S++DE R L + E+
Sbjct: 145 VRRDVGSPMAYVSVMRGCDNMCAFCVVPFTRGRERSRPFESVVDEARGLIAEGVKEITLL 204
Query: 63 QMNVN 67
NVN
Sbjct: 205 GQNVN 209
>gi|334146729|ref|YP_004509657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
gingivalis TDC60]
gi|333803884|dbj|BAK25091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
gingivalis TDC60]
Length = 465
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 108/160 (67%), Gaps = 8/160 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ GYS ++ EAD ILV TC++R+NAE KV +RL
Sbjct: 19 KLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRLA 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Y S+++ K+ + L IGVLGCMAER+K+ L+ +E +D+VAGPDSY DLP L+
Sbjct: 79 YYHSLRK--KRRASSRLVIGVLGCMAERVKEELI-REHHVDVVAGPDSYLDLPNLVGAAE 135
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
+ AINV LS ETY D+ P + ++++G SI
Sbjct: 136 QGEKAINVELSTQETYKDVMPLKMG-----GVHINGFVSI 170
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +++ ++ FVSIMRGC+N C+YCIVP+TRGRERSR ++SIL+EVR L K + EV
Sbjct: 155 MPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVT 214
Query: 61 GCQMNVN 67
NVN
Sbjct: 215 LLGQNVN 221
>gi|344202176|ref|YP_004787319.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Muricauda
ruestringensis DSM 13258]
gi|343954098|gb|AEM69897.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Muricauda
ruestringensis DSM 13258]
Length = 487
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ + +AD++LV TC+IRE AE V RL
Sbjct: 31 KLYIESYGCQMNFSDSEIVASILAKEGFNTTQNLDDADLVLVNTCSIREKAEQTVRKRLE 90
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ ++K RT P +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+
Sbjct: 91 KFNAVK------RTKPNMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIQEI 144
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY D+ P ++T+G
Sbjct: 145 DEGRNAVNVILSKDETYGDVAPVRLNTNG 173
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV L +K + E+
Sbjct: 167 VRLNTNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVNDLWEKGFKEITLL 226
Query: 63 QMNVN 67
NV+
Sbjct: 227 GQNVD 231
>gi|319952447|ref|YP_004163714.1| tRNA-i(6)a37 thiotransferase enzyme miab [Cellulophaga algicola DSM
14237]
gi|319421107|gb|ADV48216.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellulophaga algicola DSM
14237]
Length = 480
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 7/167 (4%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
E ++ LD++ K+Y E +GC MN +D+EVV SIL G++ EAD++LV
Sbjct: 7 EENQGQAVALDKITGNGRKLYIESYGCAMNFSDSEVVASILAKEGFNTTQILEEADLVLV 66
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALD 154
TC+IRE AE V RL + ++K +T P +K+GVLGCMAERLK LE+E+ +D
Sbjct: 67 NTCSIREKAELTVRKRLEKFNAVK------KTRPHMKVGVLGCMAERLKSKFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+V GPD+YKDLP L+ + A+NV+LS DETY DI+P + T+G
Sbjct: 121 MVVGPDAYKDLPNLIKEIDEGRDAVNVILSKDETYGDISPVRLQTNG 167
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSIL E++ L D + EV
Sbjct: 161 VRLQTNGVSAFVSITRGCDNMCTFCVVPFTRGRERSREPQSILKEIQDLHDSNFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|443242791|ref|YP_007376016.1| 2-methylthioadenine synthetase [Nonlabens dokdonensis DSW-6]
gi|442800190|gb|AGC75995.1| 2-methylthioadenine synthetase [Nonlabens dokdonensis DSW-6]
Length = 490
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 104/148 (70%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ N+ +AD++LV TC+IR+ AE V RL
Sbjct: 25 KLYIESYGCQMNFSDSEIVASILAKEGFNTTNNMEDADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y +K +KK+ +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+A
Sbjct: 85 KYNRVK--NKKNPN--MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLVAEID 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NVLLS +ETY DI P ++++G
Sbjct: 141 EGRDAVNVLLSKEETYGDIAPVRLNSNG 168
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV L +K + EV
Sbjct: 162 VRLNSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEVNDLWNKGFKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|347536792|ref|YP_004844217.1| putative TRNA-i(6)A37 modification protein MiaB [Flavobacterium
branchiophilum FL-15]
gi|345529950|emb|CCB69980.1| Probable TRNA-i(6)A37 modification enzyme MiaB [Flavobacterium
branchiophilum FL-15]
Length = 481
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GC MN D+E+V SIL +GY+ + EAD++LV TC+IR+ AE + RL
Sbjct: 25 KLYIESYGCAMNFADSEIVASILLENGYNTTSELEEADLVLVNTCSIRDKAEQTIRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+ + +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP LL
Sbjct: 85 KYNAVKR-----KNSQMKVGVLGCMAERLKNQFLEEEKIVDLVVGPDAYKDLPNLLKEVE 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S + AINV+LS +ETY DI+P + ++G
Sbjct: 140 SGREAINVILSKEETYGDISPVRLMSNG 167
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL E+ L +K Y E+
Sbjct: 161 VRLMSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILKEILDLQNKNYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|255530165|ref|YP_003090537.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pedobacter
heparinus DSM 2366]
gi|255343149|gb|ACU02475.1| RNA modification enzyme, MiaB family [Pedobacter heparinus DSM
2366]
Length = 485
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+E+V SIL G+ +EADV+ + TC+IRENAE +V +RL
Sbjct: 32 KLYIESYGCQMNFADSEIVASILLDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRLS 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + +K R L +GVLGCMAERLK LE+E+ +D+V GPD+Y++LP+LL
Sbjct: 92 QFGA-----EKRRNPKLIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRELPQLLNEVE 146
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S AINVLLS +ETYADI+P ++ +G
Sbjct: 147 SGHKAINVLLSREETYADISPVRLNGNG 174
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SIMRGCDNMC++C+VPFTRGRERSR SIL E + L D+ Y EV
Sbjct: 168 VRLNGNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSILAEAQDLFDRGYKEVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|406672623|ref|ZP_11079848.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bergeyella zoohelcum CCUG
30536]
gi|405587167|gb|EKB60895.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bergeyella zoohelcum CCUG
30536]
Length = 480
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+ E + K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE A
Sbjct: 17 IAEKEGNTKKLFLESYGCQMNFSDSEIVASILNEQGYNTTLKVEEADLILLNTCSIREKA 76
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E V +RL + +K+ K H L +GVLGCMAERLK LE+E +DLV GPD+Y+D
Sbjct: 77 EQTVRNRLSSFHHLKK-SKPH----LTVGVLGCMAERLKTKFLEEEHLVDLVVGPDAYRD 131
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LP LL T + AINV+LS +ETYADI P + +G
Sbjct: 132 LPNLLKETEGGRDAINVILSKEETYADINPVRLGGNG 168
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI++E + L + Y E+
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIINECKELWENGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|393779927|ref|ZP_10368158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 412 str. F0487]
gi|392609295|gb|EIW92106.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 412 str. F0487]
Length = 482
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + +AD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDDADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|409099508|ref|ZP_11219532.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pedobacter
agri PB92]
Length = 471
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 106/159 (66%), Gaps = 6/159 (3%)
Query: 44 ILDE-VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
ILD V+A + K+Y E +GC MN D+E+V SIL +G+ +ADVI + TC+IRE
Sbjct: 21 ILDTPVKADARKLYIESYGCAMNFADSEIVASILSETGFETTGDYHQADVIFINTCSIRE 80
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NAE +V +RL + +K R L +GVLGCMAERLK LE+E+ +D+V GPD+Y
Sbjct: 81 NAETRVRNRLSQFGV-----EKRRNPKLIVGVLGCMAERLKSKFLEEERLVDVVVGPDAY 135
Query: 163 KDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+DLP L+ S A+NVLLS +ETYADI+P ++++G
Sbjct: 136 RDLPNLIEQVESGHKAVNVLLSREETYADISPVRLNSNG 174
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SI RGC+NMC++C+VPFTRGRERSR SI++E + L + Y EV
Sbjct: 168 VRLNSNGITAFISITRGCNNMCSFCVVPFTRGRERSRDAHSIIEEAKTLFEAGYREVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|325954192|ref|YP_004237852.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
virosa DSM 16922]
gi|323436810|gb|ADX67274.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella
virosa DSM 16922]
Length = 482
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGK 107
R S K++ E +GCQMN +D+E+V SIL GY N EAD+IL+ TC+IR+ AE
Sbjct: 22 TRNASKKLFLESYGCQMNFSDSEIVASILTEEGYQTTNQVNEADLILLNTCSIRDKAEQT 81
Query: 108 VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167
V +RL ++K+ + LKIGVLGCMAERLK LE+E +D+V GPD+Y+DLP
Sbjct: 82 VRNRLNALNAIKK-----QNPSLKIGVLGCMAERLKHKFLEEEHLVDIVVGPDAYRDLPN 136
Query: 168 LLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LL + AINV LS +ETYA+I+P + +G
Sbjct: 137 LLTEVEDGRDAINVQLSKEETYAEISPIRLGGNG 170
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SIL E++ L + Y EV
Sbjct: 164 IRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSILREIQELHEAGYKEVTLL 223
Query: 63 QMNVN 67
NV+
Sbjct: 224 GQNVD 228
>gi|313206813|ref|YP_004045990.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|383486121|ref|YP_005395033.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386321204|ref|YP_006017366.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
gi|416109393|ref|ZP_11591352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Riemerella
anatipestifer RA-YM]
gi|442313971|ref|YP_007355274.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-CH-2]
gi|312446129|gb|ADQ82484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315023886|gb|EFT36888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Riemerella
anatipestifer RA-YM]
gi|325335747|gb|ADZ12021.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD]
gi|380460806|gb|AFD56490.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|441482894|gb|AGC39580.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-CH-2]
Length = 477
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE V R
Sbjct: 24 SKKLFLESYGCQMNFSDSEIVASILNDEGYNTTLKVEEADLILLNTCSIREKAEQTVRMR 83
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++++K+ L +GVLGCMAERLK LE+EQ +DLV GPD+Y+DLP LL
Sbjct: 84 LSQFKNLKK-----EKPSLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKE 138
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
T + AINV+LS +ETYADI P + +G
Sbjct: 139 TEDGRDAINVILSKEETYADINPVRLGGNG 168
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI+ E + L + Y E+
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIIKECQELWENGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|410029844|ref|ZP_11279674.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Marinilabilia
sp. AK2]
Length = 488
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+IRE AE
Sbjct: 27 EENTGKSKKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFEQADVIFLNTCSIREKAE 86
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
V +RL + S+K+ + L IGVLGCMAERLK LLE+E+ +D+V GPD+Y+DL
Sbjct: 87 QTVRNRLNHFNSVKKNKPE-----LTIGVLGCMAERLKDKLLEEEKIVDVVVGPDAYRDL 141
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L+A +N LS +ETYADI+P ++++G
Sbjct: 142 PNLVASAEEGNKGVNTFLSREETYADISPVRLNSNG 177
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI++E R L +K Y EV
Sbjct: 171 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVNEARELFEKGYREVTLL 230
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 231 GQNVDSYK--WS 240
>gi|315225572|ref|ZP_07867382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
F0287]
gi|420159177|ref|ZP_14665984.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
str. Holt 25]
gi|314944516|gb|EFS96555.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
F0287]
gi|394762475|gb|EJF44694.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea
str. Holt 25]
Length = 482
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL +GY+ + +AD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDDADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|423315890|ref|ZP_17293795.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bergeyella zoohelcum ATCC
43767]
gi|405585606|gb|EKB59430.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bergeyella zoohelcum ATCC
43767]
Length = 480
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 5/155 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E + K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE
Sbjct: 19 EKEGNTKKLFLESYGCQMNFSDSEIVASILNEQGYNTTLKVEEADLILLNTCSIREKAEQ 78
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
V +RL + +K+ L +GVLGCMAERLK LE+E +DLV GPD+Y+DLP
Sbjct: 79 TVRNRLSSFHHLKKSKPN-----LTVGVLGCMAERLKTKFLEEEHLVDLVVGPDAYRDLP 133
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LL T + AINV+LS DETYADI P + +G
Sbjct: 134 NLLKETEGGRDAINVILSKDETYADINPVRLGGNG 168
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI++E + L + Y E+
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIINECKELWENGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|408370216|ref|ZP_11167994.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Galbibacter
sp. ck-I2-15]
gi|407744294|gb|EKF55863.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Galbibacter
sp. ck-I2-15]
Length = 481
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+L + + + K+Y E +GCQMN +D+E+V SIL G++ +AD++LV TC+IR+
Sbjct: 15 VLQQNKNNNRKLYIESYGCQMNFSDSEIVASILSKEGFNTTQEMEDADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE + RL + ++K+I+ K +K+GVLGCMAERLK LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTIRKRLEKFNAVKRINPK-----MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP L+ + A+NV+LS +ETY DI+P ++++G
Sbjct: 130 DLPNLVQEIDQGRDAVNVILSKEETYGDISPVRLNSNG 167
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSILDEVR L D+ + E+
Sbjct: 161 VRLNSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILDEVRDLWDRGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|341879805|gb|EGT35740.1| hypothetical protein CAEBREN_28830 [Caenorhabditis brenneri]
Length = 538
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 101/148 (68%), Gaps = 6/148 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + +AD++L+MTC+IR+ AE KVW++L+
Sbjct: 76 VCYVTYGCQMNVSDMEIVRSIMTKYGFVETEQKEKADIVLLMTCSIRDGAEKKVWNQLKL 135
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R ++++ +GVLGCMAER++ LLEK + LVAGPDSY+DLPRL+A+
Sbjct: 136 IRG-NAVNRRQ-----IVGVLGCMAERVRHGLLEKRNLVHLVAGPDSYRDLPRLVAVATG 189
Query: 175 NQTAINVLLSLDETYADITPKAVSTDGR 202
AINV LSLDETYAD+ P V+ + +
Sbjct: 190 GSNAINVQLSLDETYADVQPIRVNAESK 217
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R+N +S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP+ SI++EVR L ++ Y ++
Sbjct: 210 IRVNAESKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIDSIVEEVRILRNQGYKQITLL 269
Query: 63 QMNVN 67
NVN
Sbjct: 270 GQNVN 274
>gi|399023460|ref|ZP_10725520.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chryseobacterium sp. CF314]
gi|398082960|gb|EJL73696.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chryseobacterium sp. CF314]
Length = 489
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE V R
Sbjct: 31 SKKLFLESYGCQMNFSDSEIVASILNEQGYNTTLKVEEADLILLNTCSIREKAEQTVRMR 90
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++++K K R + +GVLGCMAERLK LE+EQ +DLV GPD+Y+DLP LL
Sbjct: 91 LSQFKNLK----KERP-NMTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKE 145
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
T + AINV+LS +ETYADI P + +G
Sbjct: 146 TEDGRDAINVILSKEETYADINPVRLGGNG 175
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SIL+E + L + Y E+
Sbjct: 169 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSILEECKDLWNSGYKEITLL 228
Query: 63 QMNVN 67
NV+
Sbjct: 229 GQNVD 233
>gi|120437909|ref|YP_863595.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gramella
forsetii KT0803]
gi|229890549|sp|A0M7D3.1|MIAB_GRAFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|117580059|emb|CAL68528.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803]
Length = 481
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GC MN +D+E+V SIL G++ + EAD++LV TC+IRE AE V RL
Sbjct: 25 KLFIESYGCAMNFSDSEIVASILSKEGFNTTQNLEEADLVLVNTCSIREKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+I+ +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP L+
Sbjct: 85 KYNAVKRINPG-----MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS +ETY DI+P + ++G
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLQSNG 167
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSI++EV L+ K Y E+
Sbjct: 161 VRLQSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIVEEVNDLAAKGYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|83815966|ref|YP_446673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
13855]
gi|83757360|gb|ABC45473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM
13855]
Length = 572
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 11/176 (6%)
Query: 33 RGRERSRPMQSILDEVR------ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH 86
R RE + LD V+ A +VY E +GCQMNVND+ +V S+L+ SGY
Sbjct: 85 RQREADGEVDEDLDRVKHGYDATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRD 144
Query: 87 PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSL 146
ADV+L+ TCAIRENAE K+ RL RS K+ R L +GVLGCMAERL++ L
Sbjct: 145 QAAADVVLLNTCAIRENAERKIRARLSMLRS----EKEKRDGELMLGVLGCMAERLREKL 200
Query: 147 LEKEQALDLVAGPDSYKDLPRLL-ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LE+E +D+V GPD+Y+DLP+LL + Q A+NV LS ETY DI P ++G
Sbjct: 201 LEQEDLVDVVVGPDAYRDLPQLLYEADATGQAAVNVELSKQETYEDIQPVRYDSNG 256
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + VSA+VSIMRGCDNMCT+C+VPFTRGRE SRP+ +IL EV L+++ Y EV
Sbjct: 250 VRYDSNGVSAYVSIMRGCDNMCTFCVVPFTRGREESRPVTTILSEVARLAEEGYKEVTLL 309
Query: 63 QMNVN 67
NVN
Sbjct: 310 GQNVN 314
>gi|325106271|ref|YP_004275925.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
12145]
gi|324975119|gb|ADY54103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM
12145]
Length = 473
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL +G+ + +EADV+ + TC+IRENAE +V +RL+
Sbjct: 32 KLYVESYGCQMNFSDSEIVASILSDAGFVTTSDYKEADVVFINTCSIRENAEIRVRNRLK 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + K R + IGVLGCMAERLK LE+E+ +DLV GPD+Y+DLP L+
Sbjct: 92 EFGA-----SKVRKPDMLIGVLGCMAERLKSKFLEEEKIVDLVVGPDAYRDLPNLIGKVD 146
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
A+NVLLS +ETYADI P ++++G
Sbjct: 147 EGNKAVNVLLSREETYADINPVRLNSNG 174
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L + Y EV
Sbjct: 168 VRLNSNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIIKEAQDLFNAGYREVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|424841725|ref|ZP_18266350.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saprospira grandis DSM 2844]
gi|395319923|gb|EJF52844.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saprospira grandis DSM 2844]
Length = 483
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y E +GCQMN +D+E+V SIL+ +GY+ + AD+ILV TC+IRE AE V RLR
Sbjct: 39 RFYIESYGCQMNFSDSEIVASILQEAGYASTKYMDAADLILVNTCSIREKAEDTVRKRLR 98
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K K R L +GVLGCMAERLK LLE+E+ +D+V GPD+Y+DLP L+A
Sbjct: 99 IFDKLK----KERP-GLLVGVLGCMAERLKSKLLEEEKLVDMVLGPDAYRDLPNLIATAE 153
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
INV LS +ETYADI+P +S G
Sbjct: 154 DGDKGINVFLSREETYADISPVRLSDSG 181
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL++ V+AFV+IMRGCDNMC++C+VPFTRGRERSR SIL E + L D+ + EV
Sbjct: 175 VRLSDSGVTAFVTIMRGCDNMCSFCVVPFTRGRERSRDPYSILAECQDLFDRGFKEVTLL 234
Query: 63 QMNVN 67
NV+
Sbjct: 235 GQNVD 239
>gi|300775426|ref|ZP_07085288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
ATCC 35910]
gi|300506166|gb|EFK37302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum
ATCC 35910]
Length = 478
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE V R
Sbjct: 24 SKKLFLESYGCQMNFSDSEIVASILNEQGYNTTMKVEEADLILLNTCSIREKAEQTVRMR 83
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++++K K R + +GVLGCMAERLK LE+EQ +DLV GPD+Y+DLP LL
Sbjct: 84 LSQFKNLK----KERP-NMTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKE 138
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
T + AINV+LS +ETYADI P + +G
Sbjct: 139 TDDGRDAINVILSKEETYADINPVRLGGNG 168
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI++E + L++ Y E+
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIIEECKDLANNGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|294508608|ref|YP_003572667.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
gi|294344937|emb|CBH25715.1| 2-methylthioadenine synthetase [Salinibacter ruber M8]
Length = 613
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 11/176 (6%)
Query: 33 RGRERSRPMQSILDEVR------ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH 86
R RE + LD V+ A +VY E +GCQMNVND+ +V S+L+ SGY
Sbjct: 126 RQREADGEVDEDLDRVKHGYDATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRD 185
Query: 87 PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSL 146
ADV+L+ TCAIRENAE K+ RL RS K+ R L +GVLGCMAERL++ L
Sbjct: 186 QAAADVVLLNTCAIRENAERKIRARLSMLRS----EKEKRDGELMLGVLGCMAERLREKL 241
Query: 147 LEKEQALDLVAGPDSYKDLPRLL-ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LE+E +D+V GPD+Y+DLP+LL + Q A+NV LS ETY DI P ++G
Sbjct: 242 LEQEDLVDVVVGPDAYRDLPQLLYEADATGQAAVNVELSKQETYEDIQPVRYDSNG 297
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + VSA+VSIMRGCDNMCT+C+VPFTRGRE SRP+ +IL EV L+++ Y EV
Sbjct: 291 VRYDSNGVSAYVSIMRGCDNMCTFCVVPFTRGREESRPVTTILSEVARLAEEGYKEVTLL 350
Query: 63 QMNVN 67
NVN
Sbjct: 351 GQNVN 355
>gi|404448700|ref|ZP_11013692.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Indibacter
alkaliphilus LW1]
gi|403765424|gb|EJZ26302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Indibacter
alkaliphilus LW1]
Length = 486
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 107/161 (66%), Gaps = 5/161 (3%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
++ ++E S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+I
Sbjct: 21 FKTTVEEDTGKSKKLYIESYGCQMNFSDSEIVASIMKDNGFDTTSDYEQADVIFLNTCSI 80
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RE AE V RL + ++K+ HK T IGVLGCMAERLK LLE+E+ +D+V GPD
Sbjct: 81 REKAELTVRKRLSQFNAIKK-HKPEMT----IGVLGCMAERLKDKLLEEEKIVDVVVGPD 135
Query: 161 SYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+Y+DLP L++ Q +N LS +ETYADI P ++++G
Sbjct: 136 AYRDLPNLVSSAEDGQKGVNTFLSREETYADIAPVRLNSNG 176
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + +SAF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L +K Y EV
Sbjct: 170 VRLNSNGISAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVKEAQDLFEKGYKEVTLL 229
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
NV+ + WS + + +++N +E +V V+ A KV +LR
Sbjct: 230 GQNVDSYK--WS-PEENNKARLNK-KEEEVSTVVNFANLLEMVAKVSPQLR 276
>gi|34540755|ref|NP_905234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas
gingivalis W83]
gi|419970474|ref|ZP_14485963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas gingivalis
W50]
gi|81416611|sp|Q7MAW4.1|MIAB_PORGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|34397069|gb|AAQ66133.1| tRNA-i(6)A37 modification enzyme MiaB [Porphyromonas gingivalis
W83]
gi|392610697|gb|EIW93469.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas gingivalis
W50]
Length = 463
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 3/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ GY+ ++ EAD ILV TC++R+NAE KV +RL
Sbjct: 19 KLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRLA 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Y S+++ K+ + L IGVLGCMAER+K+ L+ +E +D+VAGPDSY DLP L+
Sbjct: 79 YYHSLRK--KRRASSRLVIGVLGCMAERVKEELI-REHHVDVVAGPDSYLDLPNLVGAAE 135
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 136 QGEKAINVELSTQETYKDVMP 156
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +++ ++ FVSIMRGC+N C+YCIVP+TRGRERSR ++SIL+EVR L K + EV
Sbjct: 155 MPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVT 214
Query: 61 GCQMNVN 67
NVN
Sbjct: 215 LLGQNVN 221
>gi|407451339|ref|YP_006723063.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-CH-1]
gi|403312323|gb|AFR35164.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-CH-1]
Length = 477
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE V R
Sbjct: 24 SKKLFLESYGCQMNFSDSEIVASILNDEGYNTTLKVEEADLILLNTCSIREKAEQTVRMR 83
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++++K+ L +GVLGCMAERLK LE+EQ +DLV GPD+Y+DLP LL
Sbjct: 84 LSQFKNLKK-----EKPGLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKE 138
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
T + AINV+LS +ETYADI P + +G
Sbjct: 139 TEDGRDAINVILSKEETYADINPVRLGGNG 168
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI+ E + L + Y E+
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIIKECQELWENGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|390947823|ref|YP_006411583.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Alistipes finegoldii DSM 17242]
gi|390424392|gb|AFL78898.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Alistipes finegoldii DSM 17242]
Length = 462
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 100/149 (67%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV DTE+V S+++ GY EADVIL+ TC+IR+NAE ++W RL
Sbjct: 27 KLFVETYGCQMNVGDTEIVVSVMQREGYVYTERIDEADVILINTCSIRDNAEQRIWGRL- 85
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ + R P L +GV+GCMAERLK+ L+E +D+VAGPD+Y+DLPRL+
Sbjct: 86 -----AEMKRYRRANPGLVVGVIGCMAERLKEKLVEGPHGVDVVAGPDAYRDLPRLVREA 140
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ +NVLLS +ETYA+I P + +G
Sbjct: 141 EAGGKGVNVLLSTEETYAEIAPVRLDRNG 169
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VSAFV+IMRGC+N C+YC+VP+TRGRERSR ++IL EVR L Y EV
Sbjct: 163 VRLDRNGVSAFVAIMRGCNNFCSYCVVPYTRGRERSRDPETILAEVRTLFGNGYREVTLL 222
Query: 63 QMNVN 67
NVN
Sbjct: 223 GQNVN 227
>gi|384097850|ref|ZP_09998970.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Imtechella
halotolerans K1]
gi|383836732|gb|EID76139.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Imtechella
halotolerans K1]
Length = 481
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G++ EAD++LV TC+IR+ AE + RL
Sbjct: 25 KLYIESYGCQMNFSDSEIVASILSKEGFNTTQIMEEADLVLVNTCSIRDKAEQTIRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++K+I+ +K+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+
Sbjct: 85 KFNAVKRINPG-----MKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIQEID 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI P ++++G
Sbjct: 140 EGRNAVNVILSKDETYGDIAPVRLNSNG 167
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AFVSI RGCDNMCT+C+VPFTRGRERSR QSIL+E+ L + + EV
Sbjct: 161 VRLNSNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILEEIGDLVSRGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|392398393|ref|YP_006434994.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Flexibacter litoralis DSM 6794]
gi|390529471|gb|AFM05201.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Flexibacter litoralis DSM 6794]
Length = 495
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+EVV ++++ G+ N +AD+I + TC+IRE AE V RL
Sbjct: 38 KLYIESYGCQMNFADSEVVAAVMQEHGFGTTNKAEDADLIFLNTCSIREKAEQTVRKRLV 97
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ R + +GVLGCMAERLK LE+E+ +DLVAGPD+Y+DLP+L+
Sbjct: 98 HINGLKK-----RKPEMMVGVLGCMAERLKHKFLEEEKIVDLVAGPDAYRDLPKLIGSVD 152
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
Q A+NVLLS +ETYADI P ++++G
Sbjct: 153 DGQKAVNVLLSREETYADIAPIRLNSNG 180
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + +SAFVSIMRGCDN+C++C+VPFTRGRERSRP SI+ E++ L + Y EV
Sbjct: 174 IRLNSNGISAFVSIMRGCDNVCSFCVVPFTRGRERSRPADSIVQEIKDLVAQGYKEVTLL 233
Query: 63 QMNVN 67
NV+
Sbjct: 234 GQNVD 238
>gi|326798175|ref|YP_004315994.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sphingobacterium sp. 21]
gi|326548939|gb|ADZ77324.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Sphingobacterium sp. 21]
Length = 477
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 100/148 (67%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+E+V SIL G+S +EADV+ + TC+IRENAE +V +RL+
Sbjct: 32 KLYIESYGCQMNFADSEIVASILLDKGFSTTPDYKEADVVFINTCSIRENAEQRVRNRLK 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ S K + + +GVLGCMAERLK LE+E+ +D+V GPD+Y+DLP L+
Sbjct: 92 EFESAKL-----KKPGMIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEKVD 146
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
A+NVLLS +ETYADI P ++T+G
Sbjct: 147 DGSRAVNVLLSREETYADINPVRLNTNG 174
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E R L Y EV
Sbjct: 168 VRLNTNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSIVKEARDLFKAGYREVTLL 227
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 228 GQNVDSYK--WS 237
>gi|429741802|ref|ZP_19275452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas catoniae
F0037]
gi|429158050|gb|EKY00617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas catoniae
F0037]
Length = 465
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 104/165 (63%), Gaps = 11/165 (6%)
Query: 50 ALSDK-VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+LS+K VY E +GCQMNV D+EVV SI++ GY P AD +L+ TC++R+NAE KV
Sbjct: 14 SLSEKRVYIETYGCQMNVADSEVVASIMQMDGYHLTEDPELADAVLINTCSVRDNAEQKV 73
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+R+ +Y S+ +K R L IGVLGCMAER K L+EK +DLV GPDSY DLP L
Sbjct: 74 LNRIEYYHSI----RKKRKRSLTIGVLGCMAERAKGELIEKHH-VDLVVGPDSYLDLPNL 128
Query: 169 LALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
+ + AINV LS ETY D+ P +S +++ G SI
Sbjct: 129 VGAVERGEKAINVELSTSETYKDVMPLKMS-----GVHISGFVSI 168
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M ++++ +S FVSIMRGC+N C+YCIVP+TRGRERSR ++SI+ EV L+ K Y EV
Sbjct: 153 MPLKMSGVHISGFVSIMRGCNNFCSYCIVPYTRGRERSRELESIIREVTDLASKGYREVT 212
Query: 61 GCQMNVN 67
NVN
Sbjct: 213 LLGQNVN 219
>gi|149369934|ref|ZP_01889785.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
gi|149356425|gb|EDM44981.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49]
Length = 479
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 103/149 (69%), Gaps = 6/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GC MN +D+E+V SIL G++ EAD++LV TC+IR+ AE V RL
Sbjct: 25 KLFIESYGCAMNFSDSEIVASILSEQGFNTTQTLEEADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQ-IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
Y ++K+ I+ K +K+GVLGCMAERLK+ L++E+ +D+V GPD+YKDLP LLA
Sbjct: 85 KYNAVKRDINPK-----MKVGVLGCMAERLKEKFLDEEKIVDMVVGPDAYKDLPNLLAEV 139
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI P ++T+G
Sbjct: 140 EAGNDAVNVVLSKDETYGDIAPVRLNTNG 168
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++A VSI RGCDNMCT+C+VPFTRGRERSR +SILDE+ L++ Y EV
Sbjct: 162 VRLNTNGINALVSITRGCDNMCTFCVVPFTRGRERSRDPKSILDEISKLANSGYKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|441500268|ref|ZP_20982435.1| tRNA-i(6)A37 methylthiotransferase [Fulvivirga imtechensis AK7]
gi|441435961|gb|ELR69338.1| tRNA-i(6)A37 methylthiotransferase [Fulvivirga imtechensis AK7]
Length = 488
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 5/168 (2%)
Query: 34 GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
G E + DE K+Y E +GCQMN +D+E+V SI+K G+ + EADV+
Sbjct: 17 GTEACETFKVSTDENTGKERKLYIESYGCQMNFSDSEIVSSIMKKEGFDTTSDFNEADVV 76
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
+ TC+IRE AE V +RL + ++K K+R + IGVLGCMAERLK LLE+E+ +
Sbjct: 77 FLNTCSIREKAEQTVRNRLAQFNTVK----KNRP-EMMIGVLGCMAERLKSQLLEEEKIV 131
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLV GPD+Y+DLP L+ Q A+N LS +ETYADI+P ++++G
Sbjct: 132 DLVVGPDAYRDLPGLVRQVDDGQKAVNTFLSREETYADISPVRLNSNG 179
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E L + Y EV
Sbjct: 173 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVKEAEDLFNNGYREVTLL 232
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 233 GQNVDSYK--WS 242
>gi|298206730|ref|YP_003714909.1| SAM/TRAM family methylase [Croceibacter atlanticus HTCC2559]
gi|83849361|gb|EAP87229.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus
HTCC2559]
Length = 482
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 101/148 (68%), Gaps = 4/148 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GC MN +D+E+V SI+ G++ + +AD++LV TC+IR+ AE V RL
Sbjct: 25 KLFIESYGCAMNFSDSEIVASIMAKEGFNTTPNLEDADLVLVNTCSIRDKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+ H + +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP L+
Sbjct: 85 KYNAVKRDHNPN----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLIKEVE 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY D++P + T+G
Sbjct: 141 EGRDAVNVILSKDETYGDVSPVRLQTNG 168
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSILDEVR LS+ Y E+
Sbjct: 162 VRLQTNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSILDEVRNLSENGYKEITLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|300770384|ref|ZP_07080263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762860|gb|EFK59677.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium
spiritivorum ATCC 33861]
Length = 478
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 8/173 (4%)
Query: 32 TRGRERSRPMQSILDEVRALSD---KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
T+ + SR +++ E A + K+Y E +GCQMN +D+E+V SIL G+
Sbjct: 8 TKEHDESRQGEALQLEASAENSNGRKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFN 67
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLE 148
EADV+ + TC+IRENAE +V +RL+ + K + + +GVLGCMAERLK LE
Sbjct: 68 EADVVFINTCSIRENAETRVRNRLKEFE-----FAKSKNPGMIVGVLGCMAERLKSKFLE 122
Query: 149 KEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+E+ +D+V GPD+Y+DLP L+ A+NVLLS +ETYADI P ++T+G
Sbjct: 123 EEKLVDVVVGPDAYRDLPNLIEQVDDGAKAVNVLLSREETYADINPVRLNTNG 175
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SIMRGCDNMC++C+VPFTRGRERSR + SI+ E + L + Y EV
Sbjct: 169 VRLNTNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDVDSIIKEAQDLFNAGYREVTLL 228
Query: 63 QMNVN 67
NV+
Sbjct: 229 GQNVD 233
>gi|227538855|ref|ZP_03968904.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241364|gb|EEI91379.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC
33300]
Length = 478
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 8/173 (4%)
Query: 32 TRGRERSRPMQSILDEVRALSD---KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
T+ + SR +++ E A + K+Y E +GCQMN +D+E+V SIL G+
Sbjct: 8 TKEHDESRQGEALQLEASAENSNGRKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFN 67
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLE 148
EADV+ + TC+IRENAE +V +RL+ + K + + +GVLGCMAERLK LE
Sbjct: 68 EADVVFINTCSIRENAETRVRNRLKEFE-----FAKSKNPGMIVGVLGCMAERLKSKFLE 122
Query: 149 KEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+E+ +D+V GPD+Y+DLP L+ A+NVLLS +ETYADI P ++T+G
Sbjct: 123 EEKLVDVVVGPDAYRDLPNLIEQVDDGAKAVNVLLSREETYADINPVRLNTNG 175
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AF+SIMRGCDNMC++C+VPFTRGRERSR + SI+ E + L + Y EV
Sbjct: 169 VRLNTNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDVDSIIKEAQDLFNAGYREVTLL 228
Query: 63 QMNVN 67
NV+
Sbjct: 229 GQNVD 233
>gi|379730614|ref|YP_005322810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saprospira
grandis str. Lewin]
gi|378576225|gb|AFC25226.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saprospira
grandis str. Lewin]
Length = 483
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y E +GCQMN +D+E+V SIL+ +GY+ + AD+ILV TC+IRE AE V RLR
Sbjct: 39 RFYIESYGCQMNFSDSEIVASILQEAGYASTKYMDAADLILVNTCSIREKAEDTVRKRLR 98
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K K R L +GVLGCMAERLK LL++E+ +DLV GPD+Y+DLP L+A
Sbjct: 99 IFDKLK----KERP-GLLVGVLGCMAERLKAKLLDEEKLVDLVLGPDAYRDLPNLIATAE 153
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
INV LS +ETYADI+P +S G
Sbjct: 154 DGDKGINVFLSREETYADISPVRLSDSG 181
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL++ V+AFV+IMRGCDNMC++C+VPFTRGRERSR SIL E + L D+ + EV
Sbjct: 175 VRLSDSGVTAFVTIMRGCDNMCSFCVVPFTRGRERSRDPYSILAECQDLFDRGFREVTLL 234
Query: 63 QMNVN 67
NV+
Sbjct: 235 GQNVD 239
>gi|255072327|ref|XP_002499838.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
RCC299]
gi|226515100|gb|ACO61096.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp.
RCC299]
Length = 507
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 100/144 (69%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y E +GCQMNV+D+E+V S+L +S Y + +AD ILV TCAIR+ AE K+W RLR
Sbjct: 4 RAYIETYGCQMNVSDSEIVASVLGASDYDLTDTHEDADAILVNTCAIRDGAEAKIWARLR 63
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL--AL 171
+++K+ + R P+ +GVLGCM ERLK LLE + DLVAGPD+Y+DLPRL+ A
Sbjct: 64 QLKAVKR-DRDVRPAPV-VGVLGCMGERLKGKLLEADGLADLVAGPDAYRDLPRLIDAAR 121
Query: 172 TYSNQT-AINVLLSLDETYADITP 194
+Q AIN LSL+ETYADI P
Sbjct: 122 GGGDQGLAINTQLSLEETYADIAP 145
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ SAFVSIMRGC+NMC +CIVPFTRGRERSRP SILDEVR LSD+ EV
Sbjct: 146 VRRSDAGPSAFVSIMRGCNNMCAFCIVPFTRGRERSRPRGSILDEVRRLSDEGCKEVTLL 205
Query: 63 QMNVN---DTEV--VWSILKSSGYSKVNHPR 88
NVN DT+ + + G+ V PR
Sbjct: 206 GQNVNSYADTKTSDAFERYYAPGFKSVYKPR 236
>gi|213963289|ref|ZP_03391546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
Capno]
gi|213954151|gb|EEB65476.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena
Capno]
Length = 482
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 104/150 (69%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K+Y E +GCQMN +D+E+V SIL GY+ + +AD++L+ TC++RE AE + R
Sbjct: 23 SKKLYIESYGCQMNFSDSEIVASILSKVGYNTTDTVDDADLVLINTCSVREKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-TMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VDEGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SIL+E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPYSILNEIADLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|334365883|ref|ZP_08514832.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes sp. HGB5]
gi|313157989|gb|EFR57395.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes sp. HGB5]
Length = 445
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 99/149 (66%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV DTE+V S+++ GY EADVIL+ TC+IR+NAE ++W RL
Sbjct: 10 KLFVETYGCQMNVGDTEIVVSVMQREGYVYTERIDEADVILINTCSIRDNAEQRIWGRL- 68
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ + R P L +GV+GCMAERLK+ L+E +D+VAGPD Y+DLPRL+
Sbjct: 69 -----AEMKRYRRANPGLVVGVIGCMAERLKEKLVEGPHGVDVVAGPDVYRDLPRLVREA 123
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ +NVLLS +ETYA+I P + +G
Sbjct: 124 EAGGKGVNVLLSTEETYAEIAPVRLDRNG 152
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VSAFV+IMRGC+N C+YC+VP+TRGRERSR ++IL EVR L Y EV
Sbjct: 146 VRLDRNGVSAFVAIMRGCNNFCSYCVVPYTRGRERSRDPETILAEVRTLFGNGYREVTLL 205
Query: 63 QMNVN 67
NVN
Sbjct: 206 GQNVN 210
>gi|452825819|gb|EME32814.1| bifunctional enzyme involved in thiolation and methylation of tRNA
[Galdieria sulphuraria]
Length = 594
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 105/172 (61%), Gaps = 13/172 (7%)
Query: 34 GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI 93
G RS P + + DKVY E +GCQMNV+DT+VV IL +G+ +A ++
Sbjct: 109 GDVRSTPYEEL-----GTCDKVYMETYGCQMNVSDTDVVQEILSKAGFELTASLNDATIV 163
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
L+ TCAIR+ AE K+W RL R + K R +GVLGCMAERLK+ LLE E L
Sbjct: 164 LLNTCAIRDKAERKIWHRLDALRQKQTEETKKRI----VGVLGCMAERLKEKLLEGEPRL 219
Query: 154 -DLVAGPDSYKDLPRLLALTYSNQ---TAINVLLSLDETYADITPKAVSTDG 201
D+V GPDSY+DLP LLA S + A NV LS+DETYADI+P ++ G
Sbjct: 220 ADIVVGPDSYRDLPYLLAAVSSGENDAAAYNVQLSMDETYADISPVRLNEQG 271
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 6/96 (6%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLNE +SAF+S+MRGCDN CT+C+VP+TRG+ERSRP+ +I+ V+ LSD + EV
Sbjct: 265 VRLNEQGISAFISVMRGCDNFCTFCVVPYTRGKERSRPVDTIVSHVQRLSDNGFKEVVLL 324
Query: 63 QMNVNDTEVVWS------ILKSSGYSKVNHPREADV 92
NVN + S I+ SSG+S V P++ +
Sbjct: 325 GQNVNSYNDISSGKTDSHIVYSSGFSSVYKPKKKGI 360
>gi|373955798|ref|ZP_09615758.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Mucilaginibacter paludis DSM 18603]
gi|373892398|gb|EHQ28295.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Mucilaginibacter paludis DSM 18603]
Length = 498
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GC MN +D+E+V SIL G+ ADVI + TC+IRENAE +V +RL+
Sbjct: 33 KLYIESYGCAMNFSDSEIVASILLDQGFETTTDFNNADVIFINTCSIRENAEQRVRNRLK 92
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ K+ R + +GVLGCMAERLK LE+E+ +D+V GPD+Y+DLP L+
Sbjct: 93 EFKVAKK-----RNPGMVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIDQVD 147
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q A+NVLLS +ETYADI P ++++G
Sbjct: 148 SGQRAVNVLLSREETYADINPVRLNSNG 175
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + ++AFVSIMRGCDNMC++C+VPFTRGRERSR SI+ E L ++ Y EV
Sbjct: 169 VRLNSNGINAFVSIMRGCDNMCSFCVVPFTRGRERSRDAISIVKECTDLFNQGYREVTLL 228
Query: 63 QMNVN 67
NV+
Sbjct: 229 GQNVD 233
>gi|218262360|ref|ZP_03476857.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
DSM 18315]
gi|218223426|gb|EEC96076.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii
DSM 18315]
Length = 244
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 98/141 (69%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GY+ + +AD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K +K +T L IGVLGCMAER+K+ L+E A DLV GPDSY DLP L+
Sbjct: 80 YFQSLK---RKKKT--LVIGVLGCMAERVKEELIEVHHA-DLVVGPDSYMDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
++L +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV
Sbjct: 155 LKLGGVHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMREKGFKEVTLL 214
Query: 63 QMNVN 67
NVN
Sbjct: 215 GQNVN 219
>gi|365875854|ref|ZP_09415379.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Elizabethkingia anophelis Ag1]
gi|442587549|ref|ZP_21006365.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Elizabethkingia anophelis R26]
gi|365756366|gb|EHM98280.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Elizabethkingia anophelis Ag1]
gi|442562720|gb|ELR79939.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Elizabethkingia anophelis R26]
Length = 478
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 97/148 (65%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMN +D+E+V SIL GY+ EAD+IL+ TC+IRE AE V RL
Sbjct: 26 KLFLESYGCQMNFSDSEIVASILNEQGYNTTLKVEEADLILLNTCSIREKAEQTVRMRLS 85
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ K+ + L +GVLGCMAERLK LE+E +DLV GPD+Y+DLP LL T
Sbjct: 86 QFKKQKESNPN-----LTVGVLGCMAERLKTKFLEEEHLVDLVVGPDAYRDLPNLLKETE 140
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS +ETYADI P + +G
Sbjct: 141 GGRDAINVILSKEETYADINPVRLGGNG 168
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + V+AFV+I RGCDNMCT+C+VPFTRGRERSR SI++E L + Y EV
Sbjct: 162 VRLGGNGVTAFVTITRGCDNMCTFCVVPFTRGRERSRDPHSIVNECVELFNNGYKEVTLL 221
Query: 63 QMNVN 67
NV+
Sbjct: 222 GQNVD 226
>gi|17553146|ref|NP_498290.1| Protein F25B5.5 [Caenorhabditis elegans]
gi|2501544|sp|Q09316.1|CK5P1_CAEEL RecName: Full=CDK5RAP1-like protein
gi|373219554|emb|CCD68781.1| Protein F25B5.5 [Caenorhabditis elegans]
Length = 547
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 6/140 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + + AD++L+MTC+IR+ AE KVW++L+
Sbjct: 81 VCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKL 140
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS ++K +GVLGCMAER++ LLEK +++VAGPDSY+DLPRL+A+
Sbjct: 141 IRS-NSVNKGQ-----IVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAG 194
Query: 175 NQTAINVLLSLDETYADITP 194
INV LSLDETYAD+ P
Sbjct: 195 GSNGINVQLSLDETYADVQP 214
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 19/163 (11%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP++SI++EV+ L D+ Y +V
Sbjct: 215 IRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTLL 274
Query: 63 QMNVND----TEVVWSILKSS-------GYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
NVN T + +S+ S+ G+ V P+ L T + + A+ R
Sbjct: 275 GQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGG--LTFTTLLEKVADAAPDIR 332
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
RF H K FP+++ L L K L Q+ D
Sbjct: 333 FRFTSP----HPKD--FPMQLIELIASRPNLCKQLHLPAQSGD 369
>gi|375254232|ref|YP_005013399.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Tannerella forsythia ATCC
43037]
gi|363408991|gb|AEW22677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Tannerella forsythia ATCC
43037]
Length = 451
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 107/160 (66%), Gaps = 11/160 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y E +GCQMNV D+EVV S++++ GY N READ I V TC++R+NAE +V RL+
Sbjct: 13 RLYIETYGCQMNVADSEVVASVMQTDGYELTNDIREADAIFVNTCSVRDNAEQRVVGRLQ 72
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+++ KKH L IGVLGCMAER+K+ L+ + A DLVAGPDSY DLP L+
Sbjct: 73 YFQSLRK-QKKH----LIIGVLGCMAERVKEELVNRHGA-DLVAGPDSYMDLPNLVGAVE 126
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
+ AI+V LS ETY D+ P ++ ++V G SI
Sbjct: 127 RGEKAIHVELSTQETYRDVIPLKMA-----GVHVTGFVSI 161
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+ FVSIMRGC+N C+YCIVP+TRGRERSR + SIL+E+R + K Y +V NVN
Sbjct: 155 VTGFVSIMRGCNNFCSYCIVPYTRGRERSRDIDSILNEIRDMRQKGYKDVTLLGQNVN 212
>gi|387793173|ref|YP_006258238.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Solitalea canadensis DSM 3403]
gi|379656006|gb|AFD09062.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Solitalea canadensis DSM 3403]
Length = 472
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SI+ G++ +EADVI + TC+IRENAE +V +RL+
Sbjct: 33 KLYIESYGCQMNFSDSEIVASIMMDMGFTTTGTYQEADVIFINTCSIRENAEQRVRNRLK 92
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K R + +GVLGCMAERLK LE+E+ +D+V GPD+Y+DLP L+
Sbjct: 93 DFAVAKL-----RKPDMMVGVLGCMAERLKAKFLEEEKLVDIVVGPDAYRDLPNLINSAD 147
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
A+NVLLS +ETYADI P ++++G
Sbjct: 148 EGNKAVNVLLSREETYADINPVRLTSNG 175
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + +SAFVSIMRGCDNMC++C+VPFTRGRERSR SI+ EV L + Y EV
Sbjct: 169 VRLTSNGISAFVSIMRGCDNMCSFCVVPFTRGRERSRDAHSIVQEVTELYNNGYKEVTLL 228
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
NV+ + WS G KVN + + + +++ +R
Sbjct: 229 GQNVDSYK--WS--SEDGTEKVNFAQLLERVALVSPDVR 263
>gi|255036486|ref|YP_003087107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dyadobacter
fermentans DSM 18053]
gi|254949242|gb|ACT93942.1| RNA modification enzyme, MiaB family [Dyadobacter fermentans DSM
18053]
Length = 489
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 106/149 (71%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ E +GCQMN +D+E+V S+++ +G++ + +AD+I + TCAIR+NAE KV +RL
Sbjct: 36 RLFIESYGCQMNFSDSEIVASVMRDAGFATTSDVNDADLIFLNTCAIRDNAEQKVRNRL- 94
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
KQ++ + P + IGVLGCMAERLK LE+E+ +D+V GPD+Y+DLPRL+
Sbjct: 95 -----KQLNFLKKNKPGMLIGVLGCMAERLKTKFLEEEKMVDIVTGPDAYRDLPRLVDEA 149
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q +NV LS +ETYADI+P ++++G
Sbjct: 150 ETGQKGVNVFLSREETYADISPIRLNSNG 178
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E L Y EV
Sbjct: 172 IRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSIVKEAEDLFRDGYREVTLL 231
Query: 63 QMNVN 67
NV+
Sbjct: 232 GQNVD 236
>gi|423343052|ref|ZP_17320766.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides johnsonii CL02T12C29]
gi|409216728|gb|EKN09711.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides johnsonii CL02T12C29]
Length = 457
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 98/141 (69%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GY+ + +AD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K +K +T L IGVLGCMAER+K+ L+E A DLV GPDSY DLP L+
Sbjct: 80 YFQSLK---RKKKT--LVIGVLGCMAERVKEELIEVHHA-DLVVGPDSYMDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
++L +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV
Sbjct: 155 LKLGGVHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMREKGFKEVTLL 214
Query: 63 QMNVN 67
NVN
Sbjct: 215 GQNVN 219
>gi|154494340|ref|ZP_02033660.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC
43184]
gi|423725471|ref|ZP_17699608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides merdae CL09T00C40]
gi|154085784|gb|EDN84829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parabacteroides merdae
ATCC 43184]
gi|409234595|gb|EKN27423.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides merdae CL09T00C40]
Length = 456
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GY+ + +AD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L IGVLGCMAER+K+ L+E A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKK-----SLVIGVLGCMAERVKEELIEVHHA-DLVVGPDSYMDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + DK + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMRDKGFKEVTLLGQNVN 219
>gi|423346915|ref|ZP_17324602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides merdae CL03T12C32]
gi|409218576|gb|EKN11544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides merdae CL03T12C32]
Length = 456
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GY+ + +AD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L IGVLGCMAER+K+ L+E A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKK-----SLVIGVLGCMAERVKEELIEVHHA-DLVVGPDSYMDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + DK + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMRDKGFKEVTLLGQNVN 219
>gi|118402077|ref|XP_001033358.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila]
gi|89287706|gb|EAR85695.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila
SB210]
Length = 604
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 7/153 (4%)
Query: 45 LDEVRALSDKVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
L++ + S K YF E +GCQMN +DTE++ IL+ +G+ + ++ AD++ + TCAIRE
Sbjct: 67 LNKTQFDSQKKYFIETYGCQMNESDTEIISGILQKAGFVRESNLDNADIVFLNTCAIREG 126
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE K+W RL R+ K+ KK L GVLGCMAERLK L+EK + +D++ GPD+Y+
Sbjct: 127 AENKIWKRLENIRAYKRKEKKQ----LITGVLGCMAERLKDKLVEKNKVVDIIVGPDAYR 182
Query: 164 DLPRLLAL--TYSNQTAINVLLSLDETYADITP 194
DLPRL+ ++ +INV LSL+ETYADI P
Sbjct: 183 DLPRLIQSLDPSTDDYSINVQLSLEETYADIVP 215
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR N DS AFVSIMRGC+NMC++CIVPFTRGRERSR +QSI++EV+ L+++ E+
Sbjct: 216 VRQNPDSCQAFVSIMRGCNNMCSFCIVPFTRGRERSRDIQSIVEEVKMLANQGVKEITLL 275
Query: 63 QMNVNDTEVVWSILKSSGYSKVNH 86
NVN + ++ GY ++H
Sbjct: 276 GQNVNS----YFDKEAEGYEDLDH 295
>gi|268571887|ref|XP_002641175.1| Hypothetical protein CBG09036 [Caenorhabditis briggsae]
Length = 997
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 96/140 (68%), Gaps = 6/140 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + +ADV+L+MTC+IR+ AE KVW+ L+
Sbjct: 536 VCYVTYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHLKL 595
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS ++K +GVLGCMAER++ LL K +++VAGPDSY+DLPRL+A+
Sbjct: 596 IRS-NSVNKSQ-----IVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAAG 649
Query: 175 NQTAINVLLSLDETYADITP 194
AINV LSLDETYAD+ P
Sbjct: 650 GSNAINVQLSLDETYADVQP 669
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ + +AF+SIMRGCDNMCTYC+VPFTRGRERSRP++SI++EVR L D Y ++
Sbjct: 670 IRVDAATKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVRRLRDDGYKQITLL 729
Query: 63 QMNVND-TEVVWSILKSS-----GYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
NVN ++ S SS G+ V P+ L T + + A+ R RF
Sbjct: 730 GQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGG--LTFTSLLEQVADAAPEVRFRF 785
>gi|332879166|ref|ZP_08446867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332682966|gb|EGJ55862.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 482
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 104/150 (69%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y E +GCQMN +D+E+V SIL GY+ + +AD++L+ TC++R+ AE + R
Sbjct: 23 TKKLYIESYGCQMNFSDSEIVASILSKVGYNTTDSVDDADLVLINTCSVRDKAEQTIRKR 82
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + ++K+ + +K+GVLGCMAER+K + LE+E+ +D+V GPD+YKDLP LL
Sbjct: 83 LEQF----NVYKRKKP-AMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEE 137
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETYADI P ++++G
Sbjct: 138 VEGGREAVNVILSKDETYADIAPIRLNSNG 167
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + V+AFVSI RGCDNMCT+CIVPFTRGRERSR SI++E+ L + + EV
Sbjct: 161 IRLNSNGVTAFVSITRGCDNMCTFCIVPFTRGRERSRDPFSIINEIGDLQARGFKEVTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|256840979|ref|ZP_05546486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
gi|256736822|gb|EEU50149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13]
Length = 457
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GYS + EAD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L +GVLGCMAER+K+ L+ A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKKS-----LIVGVLGCMAERVKEDLIHVHHA-DLVVGPDSYLDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMHEKGFKEVTLLGQNVN 219
>gi|404405626|ref|ZP_10997210.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alistipes sp.
JC136]
Length = 454
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ E +GCQMNV+DTE V SI++ +GY EADVIL+ TC+IR+NAE ++W RL
Sbjct: 17 RLFVETYGCQMNVSDTETVVSIMQRAGYVYTERIGEADVILINTCSIRDNAEQRIWGRL- 75
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ + R P L +G++GCMAERL++ L+E +D+VAGPD+Y+DLPRL+
Sbjct: 76 -----AEMKRYRRERPGLVVGIIGCMAERLREKLVEGPHGVDVVAGPDAYRDLPRLVREA 130
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ +NVLLS +ETYA+I P + +G
Sbjct: 131 EAGGKGVNVLLSTEETYAEIAPVRLDRNG 159
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VSAFV+IMRGC+N C+YC+VP+TRGRERSR ++I+ EVR+L + Y EV
Sbjct: 153 VRLDRNGVSAFVAIMRGCNNFCSYCVVPYTRGRERSRDAETIVAEVRSLFENGYREVTLL 212
Query: 63 QMNVN 67
NVN
Sbjct: 213 GQNVN 217
>gi|301312074|ref|ZP_07217996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
gi|423339373|ref|ZP_17317114.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides distasonis CL09T03C24]
gi|300830176|gb|EFK60824.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3]
gi|409230754|gb|EKN23615.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides distasonis CL09T03C24]
Length = 457
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GYS + EAD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L +GVLGCMAER+K+ L+ A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKKS-----LIVGVLGCMAERVKEDLIHVHHA-DLVVGPDSYLDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMHEKGFKEVTLLGQNVN 219
>gi|150009019|ref|YP_001303762.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Parabacteroides distasonis ATCC 8503]
gi|255014851|ref|ZP_05286977.1| putative tRNA-i(6)A37 modification enzyme MiaB [Bacteroides sp.
2_1_7]
gi|262383912|ref|ZP_06077048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
gi|298375748|ref|ZP_06985704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
gi|410102740|ref|ZP_11297665.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides sp. D25]
gi|423330231|ref|ZP_17308015.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides distasonis CL03T12C09]
gi|229890584|sp|A6LEM6.1|MIAB_PARD8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149937443|gb|ABR44140.1| conserved hypothetical protein, putative tRNA-i(6)A37 modification
enzyme MiaB [Parabacteroides distasonis ATCC 8503]
gi|262294810|gb|EEY82742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B]
gi|298266785|gb|EFI08442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19]
gi|409231847|gb|EKN24695.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides distasonis CL03T12C09]
gi|409237867|gb|EKN30662.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides sp. D25]
Length = 457
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GYS + EAD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L +GVLGCMAER+K+ L+ A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKKS-----LIVGVLGCMAERVKEDLIHVHHA-DLVVGPDSYLDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMHEKGFKEVTLLGQNVN 219
>gi|431797730|ref|YP_007224634.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Echinicola vietnamensis DSM 17526]
gi|430788495|gb|AGA78624.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Echinicola vietnamensis DSM 17526]
Length = 486
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SI+K +G+ ++ +ADVI + TC+IRE AE V RL
Sbjct: 34 KLYIESYGCQMNFSDSEIVASIMKKNGFDTTSNFEQADVIFLNTCSIREKAELTVRKRLT 93
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++K+ L IGVLGCMAERLK LLE+E+ +D+V GPD+Y+DLP L+ +
Sbjct: 94 QFNTIKKARPD-----LTIGVLGCMAERLKDKLLEEEKLVDVVVGPDAYRDLPNLVKVAE 148
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+N LS +ETYADI+P ++T+G
Sbjct: 149 EGDKGVNTFLSREETYADISPVRLNTNG 176
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L DK Y EV
Sbjct: 170 VRLNTNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVKEAQELFDKGYKEVTLL 229
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
NV+ + WS + + +++N +E DV V+ A KV +LR
Sbjct: 230 GQNVDSYK--WSP-EENNKARLNK-QEEDVSEVINFANLLEMVAKVAPQLR 276
>gi|305666326|ref|YP_003862613.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
gi|88708318|gb|EAR00555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170]
Length = 481
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 5/147 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
++ E +GC MN +D+E+V SIL + G++ +AD++LV TC+IRE AE V RL
Sbjct: 26 LFIESYGCAMNFSDSEIVASILANEGFNTTQKLEDADLVLVNTCSIREKAELTVRKRLEK 85
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y ++K+ + H +K+GVLGCMAERLK LLE+E+ +D+V GPD+YKDLP L+
Sbjct: 86 YNAIKK-KRPH----MKVGVLGCMAERLKSKLLEEEKIVDMVVGPDAYKDLPNLIQEIDE 140
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
+ A+NV+LS DETY DI P ++T+G
Sbjct: 141 GREAVNVILSKDETYGDIAPVRLNTNG 167
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSA VSI RGCDNMCT+C+VPFTRGRERSR QSI+ EV L +K + E+
Sbjct: 161 VRLNTNGVSALVSITRGCDNMCTFCVVPFTRGRERSRDSQSIIAEVNDLWNKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|325285677|ref|YP_004261467.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Cellulophaga lytica DSM 7489]
gi|324321131|gb|ADY28596.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Cellulophaga lytica DSM 7489]
Length = 480
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 100/149 (67%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GC MN +D+E+V SIL G++ +AD++LV TC+IRE AE + RL
Sbjct: 27 KLYIESYGCAMNFSDSEIVASILSEEGFNTTKVLEDADLVLVNTCSIREKAELTIRKRLE 86
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ ++K RT P LK+GVLGCMAERLK LE+E+ +D+V GPD+YKDLP L+
Sbjct: 87 KFNAVK------RTKPHLKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLIKEV 140
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS +ETY D+ P ++T+G
Sbjct: 141 DEGRNAINVILSKEETYGDVAPVRLNTNG 169
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + +SA+VSI RGCDNMCT+C+VPFTRGRERSR QSIL+EV L ++ Y E+
Sbjct: 163 VRLNTNGISAYVSITRGCDNMCTFCVVPFTRGRERSREPQSILEEVNDLWNRGYKEITLL 222
Query: 63 QMNVN 67
NV+
Sbjct: 223 GQNVD 227
>gi|365121624|ref|ZP_09338540.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Tannerella sp. 6_1_58FAA_CT1]
gi|363645114|gb|EHL84388.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Tannerella sp. 6_1_58FAA_CT1]
Length = 458
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+ + K++ E +GCQMNV D+EVV SI++ GY+ + +AD ILV TC+IR+NAE KV
Sbjct: 15 QTVEKKLFIETYGCQMNVADSEVVASIMQMDGYALCDSIEDADAILVNTCSIRDNAEQKV 74
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
RL+++ S+++ K L IG+LGCMAER+K+ LLEK +DLV GPD+Y DLP L
Sbjct: 75 LSRLQYFNSLRKKKKN-----LVIGILGCMAERVKEELLEKHH-VDLVVGPDAYLDLPNL 128
Query: 169 LALTYSNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY +I PK +
Sbjct: 129 IGAVEQGEKAINVDLSTTETYKNIIPKRI 157
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S F+SIMRGC+N C+YCIVP+TRGRERSR +SIL E+ L D+ + EV
Sbjct: 156 RIGGNRISGFISIMRGCNNFCSYCIVPYTRGRERSREPESILKELNDLKDRGFKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|170592325|ref|XP_001900919.1| CDK5RAP1-like protein [Brugia malayi]
gi|158591614|gb|EDP30219.1| CDK5RAP1-like protein, putative [Brugia malayi]
Length = 453
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 96/131 (73%), Gaps = 7/131 (5%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MNVND E+V S+L SSGY + + +EAD+IL+MTC+IRE AE KVWD L+ R +++ K
Sbjct: 1 MNVNDVELVRSLLLSSGYVETDDVKEADIILLMTCSIREGAENKVWDELKVLRKIRR--K 58
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLL 183
K +GVLGCMAER++ +LL + +D+VAGPDSY+DLPRLLA+ AINV L
Sbjct: 59 KG-----VVGVLGCMAERVRHNLLTCTENVDVVAGPDSYRDLPRLLAIARCGSMAINVQL 113
Query: 184 SLDETYADITP 194
S++ETYAD+ P
Sbjct: 114 SVEETYADVVP 124
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 52/65 (80%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ S +A+VSIMRGCDNMCTYCIVP+TRGRERSRPM SILDE+R LSD+ +V
Sbjct: 125 VRKDKFSKTAYVSIMRGCDNMCTYCIVPYTRGRERSRPMNSILDEIRRLSDEGVKQVTLL 184
Query: 63 QMNVN 67
NVN
Sbjct: 185 GQNVN 189
>gi|198274122|ref|ZP_03206654.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135]
gi|198273200|gb|EDY97469.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides plebeius DSM
17135]
Length = 457
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 20 KLFIETYGCQMNVADSEVIASIMQMAGYSPCDTLEEADAVFMNTCSIRDNAEQKILNRLE 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+++ K L +GVLGCMAER+K L+EK +DLVAGPD+Y LP L+A
Sbjct: 80 FFHSLRKKRKN-----LIVGVLGCMAERVKNELIEKHH-VDLVAGPDAYLTLPDLIAAVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRI 157
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLQRKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|298372633|ref|ZP_06982623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
274 str. F0058]
gi|298275537|gb|EFI17088.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon
274 str. F0058]
Length = 440
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 100/147 (68%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K+ E +GCQMNV D+EVV +I+ S GY ++ +EAD I++ TC++R+NAE KV
Sbjct: 1 MAKKLKIETYGCQMNVADSEVVAAIMLSDGYQMTDNEKEADTIIINTCSVRDNAEQKVIS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL+++ S+++ +K L IGV+GCMAER+++ LLEK +D VAGPDSY DLP L+
Sbjct: 61 RLQYFNSLRKNNKD-----LNIGVIGCMAERMQEELLEKHN-IDFVAGPDSYLDLPNLVG 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
+ AIN+ LS ETY D+ P +
Sbjct: 115 AVEKGEKAINIKLSKTETYKDVMPARI 141
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S+ FVSIMRGC+ C+YCIVP+TRGRERSR ++SI++EV+ L Y EV NV+
Sbjct: 144 SILGFVSIMRGCNKFCSYCIVPYTRGRERSREVESIINEVKNLQANGYKEVTLLGQNVD 202
>gi|311747597|ref|ZP_07721382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
gi|126575579|gb|EAZ79889.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1]
Length = 492
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
++ +DE S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+I
Sbjct: 21 FKTTVDENTGKSRKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFNQADVIFLNTCSI 80
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
RE AE V RL + +K R P + IGVLGCMAERLK LLE+E+ +D+V GP
Sbjct: 81 REKAELTVRKRLTDF------NKAKRNKPEMTIGVLGCMAERLKDKLLEEEKIVDVVVGP 134
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLP L++ +N LS +ETYADI P ++++G
Sbjct: 135 DAYRDLPNLVSSAEDGNKGVNTFLSREETYADIAPVRLNSNG 176
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E + L K Y EV
Sbjct: 170 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSIVAEAQDLYAKGYKEVTLL 229
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREA 90
NV+ + WS + + +++N EA
Sbjct: 230 GQNVDSYK--WS-PEENNKARLNKKEEA 254
>gi|375144530|ref|YP_005006971.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Niastella koreensis
GR20-10]
gi|361058576|gb|AEV97567.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Niastella koreensis
GR20-10]
Length = 494
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 5/152 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A K Y E +GC MN D+E+V SIL +G+ + EAD+IL+ TC+IRE AE V
Sbjct: 28 AYVKKFYIESYGCAMNFADSEIVASILNENGFGATRNFEEADLILINTCSIREKAEQTVR 87
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL R K +H + L IGVLGCMAERLK+ LL++E+ +D+V GPD+Y+ LP L+
Sbjct: 88 KRLTELRKAK----RHNSGAL-IGVLGCMAERLKEKLLQEEKLVDMVVGPDAYRSLPGLI 142
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ Q A+NVLLS DETYADI P + ++G
Sbjct: 143 MEAGTGQKAVNVLLSRDETYADIAPVRLDSNG 174
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL+ + VS FVSIMRGC+NMC +C+VPFTRGRERSR SI+ E L ++ Y EV
Sbjct: 168 VRLDSNGVSGFVSIMRGCNNMCAFCVVPFTRGRERSRDPHSIIRECTDLFNQGYREVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|290996977|ref|XP_002681058.1| predicted protein [Naegleria gruberi]
gi|284094681|gb|EFC48314.1| predicted protein [Naegleria gruberi]
Length = 471
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 23/173 (13%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+ E +GCQMNV+DT+++ SIL +GY V+ +EA VIL+ TCA+RENAE K+W RL
Sbjct: 12 VFIETYGCQMNVSDTQIILSILDKNGYKLVDSDKEASVILLNTCAVRENAENKIWIRLNE 71
Query: 115 YRSMKQIHKKHRTFP--------LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
+ + +K F ++IGVLGCMAERLK L+E +D+V GPD Y+DLP
Sbjct: 72 LKKKRHENKHLHNFNPEEYPVSGVQIGVLGCMAERLKTKLIET-NMVDVVVGPDQYRDLP 130
Query: 167 RLLALTYSN--------------QTAINVLLSLDETYADITPKAVSTDGRRSI 205
LL + Q +NV+LS+DETYADI P V G+ +
Sbjct: 131 NLLKKNEESEMLQRSLDDNVEGRQAQLNVMLSMDETYADIEPVRVGDTGKSAF 183
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR+ + SAFVSIMRGCDNMC+YCIVPFTRGRERSR + SIL+E+R LS EV
Sbjct: 173 VRVGDTGKSAFVSIMRGCDNMCSYCIVPFTRGRERSRDITSILNEIRQLSKNGIKEVTLL 232
Query: 63 QMNVN 67
NVN
Sbjct: 233 GQNVN 237
>gi|225010050|ref|ZP_03700522.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
MS024-3C]
gi|225005529|gb|EEG43479.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium
MS024-3C]
Length = 482
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 7/144 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y E +GC MN +D+EVV SIL + GY EAD++L+ TC+IR+ AE V R
Sbjct: 23 AKKLYIESYGCAMNFSDSEVVASILAAEGYHTTEVLEEADLVLINTCSIRDKAEQTVRKR 82
Query: 112 LRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L ++++K R+ P +K+GVLGCMAERLK LLE+ + +D+V GPD+YKD+P LL
Sbjct: 83 LEKFQAVK------RSNPQMKVGVLGCMAERLKTKLLEEAKIVDMVVGPDAYKDIPNLLK 136
Query: 171 LTYSNQTAINVLLSLDETYADITP 194
+ + A+NV+LS +ETY DI P
Sbjct: 137 EVEAGRNAVNVILSKEETYGDIAP 160
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++AFVSI RGCDNMCT+C+VPFTRGRERSR SIL E++ L DK Y E+
Sbjct: 161 VRLASNKITAFVSITRGCDNMCTFCVVPFTRGRERSRDPLSILTEIQDLWDKGYKEMTLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>gi|410095997|ref|ZP_11290988.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides goldsteinii CL02T12C30]
gi|409227403|gb|EKN20301.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Parabacteroides goldsteinii CL02T12C30]
Length = 456
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GY+ + +AD + V TC++R+NAE KV+ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYTLTDKIEDADAVFVNTCSVRDNAEQKVYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L +GVLGCMAER+K+ L+ A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKK-----SLIVGVLGCMAERVKEELINVHHA-DLVVGPDSYMDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVMP 154
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M ++L +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + DK + E
Sbjct: 153 MPLKLGGVHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEIRDMRDKGFKEAT 212
Query: 61 GCQMNVN 67
NVN
Sbjct: 213 LLGQNVN 219
>gi|423281352|ref|ZP_17260263.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 610]
gi|404583056|gb|EKA87739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 610]
Length = 457
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|406025662|ref|YP_006705963.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
gi|404433261|emb|CCM10543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
Length = 484
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 5/151 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
L K+Y E +GCQMN +D+E+V SI+ G+ + +AD+IL+ TCAIR+ AE + +
Sbjct: 30 LPRKLYIESYGCQMNFSDSEIVASIMAQQGFVFTDQHHKADLILINTCAIRDKAEQTIRN 89
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + K L +G+LGCMAERLK LLE+E+ +DL+AGPD+Y+DLPRL++
Sbjct: 90 RLLVFNQQKISQPD-----LIVGILGCMAERLKTQLLEEEKVVDLIAGPDAYRDLPRLIS 144
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDG 201
A+N LS +ETYADI P + + G
Sbjct: 145 QVDQGYKAVNTFLSKEETYADIAPIRLHSSG 175
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ V+AF+SIMRGC+NMC++CIVPFTRGRERSR SI+ E + L + Y E+
Sbjct: 169 IRLHSSGVTAFISIMRGCNNMCSFCIVPFTRGRERSRDPYSIVQEAKKLFEAGYKEITLL 228
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHP---READVILVMTCAIRENAEGKVWDRLRFYRS-- 117
NV+ W + HP + D ++ + + AE R+RF S
Sbjct: 229 GQNVDSYS--W----HPSVASATHPLSNKANDQVIHFSQLLAMVAEIDPTLRVRFSTSHP 282
Query: 118 ----------MKQIHK--KHRTFPLKIG---VLGCMAERLKKS-LLEKEQALDLVAGP 159
MK+ KH P++ G +L M ++ LE+ QA+ + GP
Sbjct: 283 KDMTDAVLYTMKRYPNICKHIHLPVQSGNSRILALMNRTYDRAWYLERIQAIRTILGP 340
>gi|313149788|ref|ZP_07811981.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138555|gb|EFR55915.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 457
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|53711319|ref|YP_097311.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
fragilis YCH46]
gi|60679624|ref|YP_209768.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
fragilis NCTC 9343]
gi|265764766|ref|ZP_06093041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
gi|336407573|ref|ZP_08588070.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
2_1_56FAA]
gi|375356426|ref|YP_005109197.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
638R]
gi|383116393|ref|ZP_09937143.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. 3_2_5]
gi|423248050|ref|ZP_17229066.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL03T00C08]
gi|423253001|ref|ZP_17233932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL03T12C07]
gi|423259623|ref|ZP_17240546.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL07T00C01]
gi|423263402|ref|ZP_17242405.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL07T12C05]
gi|423270066|ref|ZP_17249038.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL05T00C42]
gi|423272478|ref|ZP_17251425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL05T12C13]
gi|81317302|sp|Q5LJ70.1|MIAB_BACFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81384036|sp|Q650P7.1|MIAB_BACFR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52214184|dbj|BAD46777.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60491058|emb|CAH05806.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
NCTC 9343]
gi|251948349|gb|EES88631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. 3_2_5]
gi|263254150|gb|EEZ25584.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16]
gi|301161106|emb|CBW20643.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis
638R]
gi|335947477|gb|EGN09268.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
2_1_56FAA]
gi|387775933|gb|EIK38036.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL07T00C01]
gi|392657528|gb|EIY51161.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL03T12C07]
gi|392660924|gb|EIY54522.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL03T00C08]
gi|392699611|gb|EIY92785.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL05T00C42]
gi|392707697|gb|EIZ00813.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL07T12C05]
gi|392708908|gb|EIZ02010.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis CL05T12C13]
Length = 457
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|423282638|ref|ZP_17261523.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 615]
gi|404582206|gb|EKA86901.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 615]
Length = 457
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|224023497|ref|ZP_03641863.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
18228]
gi|224016719|gb|EEF74731.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM
18228]
Length = 455
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 20 KLFIETYGCQMNVADSEVIASIMQMAGYSPCETLEEADAVFMNTCSIRDNAEQKILNRLE 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+++ +KH L +GVLGCMAER+K L+E +DLVAGPD+Y LP L++
Sbjct: 80 FFHSLRK-KRKH----LIVGVLGCMAERVKNDLIEHHH-VDLVAGPDAYLTLPELISAVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRI 157
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S +VSIMRGC+N C YCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 156 RICGNHISGYVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVHDLERKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|332662143|ref|YP_004444931.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Haliscomenobacter hydrossis DSM 1100]
gi|332330957|gb|AEE48058.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Haliscomenobacter hydrossis DSM 1100]
Length = 481
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMN +D+E+V SIL G+ + AD+ILV TC+IRE AE V RLR +
Sbjct: 43 YIESYGCQMNFSDSEIVASILAEVGFKPTRNLELADLILVNTCSIREKAEETVRKRLRIF 102
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
++K+ +K T +GVLGCMAERLK LE+E+ +DLV GPD+Y+DLP+L+A
Sbjct: 103 DAIKR--QKPGTL---VGVLGCMAERLKSKFLEEERLVDLVVGPDAYRDLPKLVATAEDG 157
Query: 176 QTAINVLLSLDETYADITPKAVSTDG 201
+NV LS +ETYADI+P + + G
Sbjct: 158 DKGVNVFLSREETYADISPLRLDSKG 183
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ VSAF+SIMRGCDNMC++C+VPFTRGRERSR SIL E + L ++ Y EV
Sbjct: 177 LRLDSKGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDAFSILAEAQELYERGYREVTLL 236
Query: 63 QMNVN 67
NV+
Sbjct: 237 GQNVD 241
>gi|308497096|ref|XP_003110735.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
gi|308242615|gb|EFO86567.1| hypothetical protein CRE_04500 [Caenorhabditis remanei]
Length = 561
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 11/161 (6%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + + +AD++L+MTC+IR+ AE KVW++L+
Sbjct: 81 VCYVTYGCQMNVSDMEIVRSIMSQYGFVESDQKEKADIVLLMTCSIRDGAEKKVWNQLKL 140
Query: 115 YRSMKQIHKKHRTFPL---------KIGVL-GCMAERLKKSLLEKEQALDLVAGPDSYKD 164
RS ++K+ L KI L GCMAER++ LLEK +++VAGPDSY+D
Sbjct: 141 IRS-NSVNKRQIVGVLGLFSVLMNAKISYLTGCMAERVRHDLLEKRNLVNIVAGPDSYRD 199
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
LPRL+A+ AINV LSLDETYA++ P V + R +
Sbjct: 200 LPRLVAVASGGSNAINVQLSLDETYAEVQPIRVDAESRTAF 240
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ +S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP+ SI++EVR L D+ Y ++
Sbjct: 230 IRVDAESRTAFISIMRGCDNMCTYCVVPFTRGRERSRPIDSIVEEVRRLRDQGYKQITLL 289
Query: 63 QMNVND----TEVVWSILKSS------GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
NVN T + + + S+ G+ V P+ L T + + A+ R
Sbjct: 290 GQNVNSYRDMTSMDFPMNPSTTEDRVPGFKTVYKPKSGG--LTFTSLLEKVADAAPDVRF 347
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
RF H K FP+++ L L K L Q+ D
Sbjct: 348 RFTSP----HPKD--FPMQLIELIASRTNLCKQLHLPAQSGD 383
>gi|424665700|ref|ZP_18102736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 616]
gi|404573953|gb|EKA78704.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides fragilis HMW 616]
Length = 457
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS +AD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEDADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|189460206|ref|ZP_03008991.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136]
gi|189433067|gb|EDV02052.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides coprocola DSM
17136]
Length = 457
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 98/146 (67%), Gaps = 6/146 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMNV D+EV+ SI++ +GYS EAD + + TC+IR+NAE K+ +R
Sbjct: 18 TKKLFIETYGCQMNVADSEVIASIMQMAGYSPCESLDEADAVFMNTCSIRDNAEQKILNR 77
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L F+ S+++ +KH L +GVLGCMAER+K L+E +DLVAGPD+Y LP L+
Sbjct: 78 LEFFHSLRK-KRKH----LIVGVLGCMAERVKNDLIENHH-VDLVAGPDAYLTLPDLIGA 131
Query: 172 TYSNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 132 VEAGEKAINVELSTTETYRDVIPSRI 157
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVHDLQQKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|333029498|ref|ZP_08457559.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides coprosuis DSM 18011]
gi|332740095|gb|EGJ70577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides coprosuis DSM 18011]
Length = 459
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 5/141 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+ E +GCQMNV D+EVV S++K +GY EAD + + TC+IRENAE K++ RL
Sbjct: 20 KLLIETYGCQMNVADSEVVASVMKMAGYEITEDLEEADAVFLNTCSIRENAELKIYKRLD 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ SMK+ KK L IGVLGCMAER+K+SL+E+ A +LV GPD+Y LP L+A
Sbjct: 80 YFYSMKRRKKK----GLIIGVLGCMAERVKQSLIEEHHA-NLVVGPDAYLSLPDLIASVE 134
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + AI++ LS ETY DI P
Sbjct: 135 AGEKAIDIELSTTETYKDIIP 155
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL ++S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 157 RLCGTAISGFVSIMRGCNNFCTYCIVPYTRGRERSREVESILNEVDDLIKKGYKEITLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|325299379|ref|YP_004259296.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Bacteroides salanitronis DSM 18170]
gi|324318932|gb|ADY36823.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides salanitronis DSM 18170]
Length = 463
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 7/156 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ E +GCQMNV D+EVV S+++ +GY EAD + + TC+IR+NAE K+ +R
Sbjct: 18 TKKLFIETYGCQMNVADSEVVASVMQMAGYEPCGTLDEADAVFMNTCSIRDNAEQKILNR 77
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L F+ ++++ +KH L +GVLGCMAER+K+ L+E +DLVAGPD+Y LP L+A
Sbjct: 78 LEFFHALRK-KRKH----LIVGVLGCMAERVKEDLIENHH-VDLVAGPDAYLSLPDLIAS 131
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ + AINV LS ETY D+ P + + R S YV
Sbjct: 132 VEAGEKAINVELSTTETYRDVIPSRICGN-RVSGYV 166
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS +VSIMRGC+N C YCIVP+TRGRERSR + SIL+EV L K Y EV
Sbjct: 156 RICGNRVSGYVSIMRGCNNFCHYCIVPYTRGRERSRDVASILNEVNDLCQKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|409196682|ref|ZP_11225345.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Marinilabilia
salmonicolor JCM 21150]
Length = 462
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 92/142 (64%), Gaps = 7/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+EVV S+++ GY +AD I + TC+IRENAE +V R+R
Sbjct: 25 KLYIETYGCQMNFADSEVVASVMQMDGYETSGSHTDADAIFINTCSIRENAEQRVLARVR 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K+ H K L IG++GCMAER K+ L E DLVAGPD+Y DLP L++L
Sbjct: 85 ELKALKKQHPK-----LVIGIIGCMAERAKEQLF--EVGADLVAGPDAYMDLPNLVSLVE 137
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ AINV LS ETY DI PK
Sbjct: 138 QGEKAINVELSTTETYRDIIPK 159
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL + SAF+SIMRGC+N CTYCIVP+TRGRERSR +SI +E L + Y EV
Sbjct: 160 RLGPNKTSAFISIMRGCNNFCTYCIVPYTRGRERSRDPESIREEFDKLVKEGYKEVSLLG 219
Query: 64 MNVNDTEVVWSILKSSGYSKVNHP 87
NVN S L +G +++ P
Sbjct: 220 QNVN------SYLHKNGDKEMDFP 237
>gi|294643380|ref|ZP_06721199.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
gi|292641258|gb|EFF59457.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
Length = 209
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 21 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 81 FFHSLKK--KKKR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + AINV LS ETY D+ P
Sbjct: 135 TGEKAINVELSTTETYRDVIP 155
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDK 54
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAK 207
>gi|427384947|ref|ZP_18881452.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides oleiciplenus YIT 12058]
gi|425728208|gb|EKU91067.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides oleiciplenus YIT 12058]
Length = 455
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSAADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLK---KKKRN--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLVAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|298483271|ref|ZP_07001450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
gi|298270588|gb|EFI12170.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22]
Length = 457
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 21 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 81 FFHSLKK--KKKR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRI 158
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|160884905|ref|ZP_02065908.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483]
gi|423214564|ref|ZP_17201092.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides xylanisolvens CL03T12C04]
gi|156109940|gb|EDO11685.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus ATCC
8483]
gi|392692979|gb|EIY86215.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides xylanisolvens CL03T12C04]
Length = 457
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 21 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 81 FFHSLKK--KKKR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRI 158
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|167763971|ref|ZP_02436098.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC
43183]
gi|167698087|gb|EDS14666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides stercoris
ATCC 43183]
Length = 455
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLSLPDLIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|262405697|ref|ZP_06082247.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
gi|294810637|ref|ZP_06769287.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
SD CC 1b]
gi|345510888|ref|ZP_08790448.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. D1]
gi|229442911|gb|EEO48702.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. D1]
gi|262356572|gb|EEZ05662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22]
gi|294442179|gb|EFG10996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
SD CC 1b]
Length = 457
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 21 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 81 FFHSLKK--KKKR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRI 158
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|189464718|ref|ZP_03013503.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM
17393]
gi|189436992|gb|EDV05977.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides intestinalis
DSM 17393]
Length = 470
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 34 KLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRLE 93
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 94 FFHSLK---KKKRN--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLVAAVE 147
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 148 AGEKAINVELSTTETYRDVIPSRI 171
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 170 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVVKGYKEVTLLG 229
Query: 64 MNVN 67
NVN
Sbjct: 230 QNVN 233
>gi|313205436|ref|YP_004044093.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paludibacter
propionicigenes WB4]
gi|312444752|gb|ADQ81108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paludibacter
propionicigenes WB4]
Length = 456
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 102/150 (68%), Gaps = 7/150 (4%)
Query: 50 ALSDK-VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
AL+DK ++ E +GCQMNV D+EVV SI++ G++ + EAD I V TC+IR+NAE +V
Sbjct: 16 ALNDKKLFIETYGCQMNVADSEVVASIMQMDGFALTDKITEADAIFVNTCSIRDNAEQRV 75
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+RL+++ ++K+ +KK L +GV+GCMAER+K L+ E +++V GPD+Y D+P L
Sbjct: 76 INRLKYFETLKRKNKK-----LIVGVVGCMAERVKDELI-NEYGVNIVVGPDAYMDIPNL 129
Query: 169 LALTYSNQTAINVLLSLDETYADITPKAVS 198
+ AINV LS ETY+D+ P +S
Sbjct: 130 IGSVEQGNKAINVDLSTTETYSDVLPTRIS 159
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S+S F+SIMRGC+N C+YCIVP+TRGRERSR ++SIL E++ L K Y EV NVN
Sbjct: 161 SISGFISIMRGCNNFCSYCIVPYTRGRERSRDVESILTELKDLQAKNYKEVTLLGQNVN 219
>gi|153807123|ref|ZP_01959791.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185]
gi|423219896|ref|ZP_17206392.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides caccae CL03T12C61]
gi|149130243|gb|EDM21453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides caccae ATCC
43185]
gi|392624462|gb|EIY18551.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides caccae CL03T12C61]
Length = 455
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKK--KKKR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|304383561|ref|ZP_07366021.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
16973]
gi|304335371|gb|EFM01641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM
16973]
Length = 441
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY EAD + + TC++RENAE K++ RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMQMAGYEMCESIEEADAVFLNTCSVRENAENKIYHRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ KKHR +GVLGCMAER++ L+E A DLVAGPDSY +LP L+A
Sbjct: 63 ALHAKST--KKHRVI---LGVLGCMAERVRDDLIENHHA-DLVAGPDSYLNLPDLIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
Q AIN+ LS ETY DI P+ +
Sbjct: 117 LGQKAINIELSKTETYRDIVPQRI 140
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGCDN C YCIVP+TRGRERSR ++SI+ EV L +K + E+
Sbjct: 139 RIMGNHISGFVSIMRGCDNFCHYCIVPYTRGRERSRDIESIVKEVHDLQEKGFKEITLLG 198
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPR 88
NVN + + G S++ P+
Sbjct: 199 QNVNS----YRFQPADGSSEIGFPQ 219
>gi|218131688|ref|ZP_03460492.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697]
gi|217985991|gb|EEC52330.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides eggerthii DSM
20697]
Length = 456
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 20 KLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLE 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 80 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRI 157
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|333382392|ref|ZP_08474062.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
[Dysgonomonas gadei ATCC BAA-286]
gi|332828703|gb|EGK01395.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
[Dysgonomonas gadei ATCC BAA-286]
Length = 456
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 30/228 (13%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ GY+ + +AD + V TC+IR+NAE +V RL
Sbjct: 19 KLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEDADAVFVNTCSIRDNAEQRVIQRLD 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ ++K+ K + + IGVLGCMAER+K+ L +K +D+V GPD+Y DLP L+
Sbjct: 79 YFNALKRKKKPN----MIIGVLGCMAERVKEELHDKHH-VDVVVGPDAYLDLPNLVGAAE 133
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI--------------YVDGRW 219
S + AINV+LS ETY D+ P + + ++ G SI Y GR
Sbjct: 134 SGEKAINVVLSKTETYKDVIPLRIGGN-----HISGFISIMRGCDKVCSYCIVPYTRGRE 188
Query: 220 RRKLGQQMVDGRSMSMDDGG------GASMSSRQCGRFQSTLIDGHRL 261
R +L Q +++ + D G G +++S + T++D RL
Sbjct: 189 RSRLPQSILNEVADLRDKGFKEVTLLGQNVNSYRYENEDGTVVDFSRL 236
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R+ + +S F+SIMRGCD +C+YCIVP+TRGRERSR QSIL+EV L DK + EV
Sbjct: 155 LRIGGNHISGFISIMRGCDKVCSYCIVPYTRGRERSRLPQSILNEVADLRDKGFKEVTLL 214
Query: 63 QMNVN 67
NVN
Sbjct: 215 GQNVN 219
>gi|160888105|ref|ZP_02069108.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492]
gi|156862416|gb|EDO55847.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides uniformis
ATCC 8492]
Length = 457
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLK---KKKRG--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|380693024|ref|ZP_09857883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
faecis MAJ27]
Length = 455
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|29348604|ref|NP_812107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
thetaiotaomicron VPI-5482]
gi|383124773|ref|ZP_09945434.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. 1_1_6]
gi|81443605|sp|Q8A2W0.1|MIAB_BACTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29340509|gb|AAO78301.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841074|gb|EES69155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. 1_1_6]
Length = 455
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKK-----ALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|329963728|ref|ZP_08301174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
12057]
gi|328527738|gb|EGF54730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT
12057]
Length = 458
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAGTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKK--KKRR---LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L+ K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLAQKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|298386977|ref|ZP_06996531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
gi|298260127|gb|EFI02997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14]
Length = 455
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKK-----ALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|423223014|ref|ZP_17209483.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides cellulosilyticus CL02T12C19]
gi|392640283|gb|EIY34085.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides cellulosilyticus CL02T12C19]
Length = 456
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFYSLK---KKKRN--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLVAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|404486947|ref|ZP_11022134.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Barnesiella intestinihominis YIT 11860]
gi|404335443|gb|EJZ61912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Barnesiella intestinihominis YIT 11860]
Length = 454
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI++ +GY+ + ++D I V TC+IR+NAE KV RL
Sbjct: 17 KLFIETYGCQMNVADSEVVASIMQMAGYTLCDTIEDSDAIFVNTCSIRDNAEQKVLSRLS 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+++ HKK L IGVLGCMAER+++ L+ E +DLV GPDSY DLP L+
Sbjct: 77 YFQSLRK-HKK----SLVIGVLGCMAERVREQLI-TENGVDLVVGPDSYLDLPNLVGAAE 130
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+NV LS ETY ++ P +
Sbjct: 131 RGEKAVNVELSTTETYREVIPSRI 154
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S F+SIMRGC+N C+YCIVP+TRGRERSR +SIL E+ L K + EV
Sbjct: 153 RIGHNRISGFISIMRGCNNFCSYCIVPYTRGRERSREPESILGELADLKIKGFKEVTLLG 212
Query: 64 MNVN 67
NVN
Sbjct: 213 QNVN 216
>gi|329956412|ref|ZP_08297009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
12056]
gi|328524309|gb|EGF51379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT
12056]
Length = 455
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|374373493|ref|ZP_09631153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Niabella soli DSM 19437]
gi|373234466|gb|EHP54259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Niabella soli DSM 19437]
Length = 476
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y E +GC MN D+EVV +IL G+ + EAD+I + TC+IRE AE V RL
Sbjct: 32 QFYIESYGCAMNFADSEVVAAILNKEGFGATRNMEEADLIFINTCSIREKAEQTVRKRLT 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K + +GVLGCMAERLK LE+E+ +D+V GPD+Y+ LPRL+
Sbjct: 92 DFKKLKAEKPG-----MLVGVLGCMAERLKSKFLEEEKLVDIVVGPDAYRSLPRLVDEAS 146
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
S Q +NVLLS +ETYADI P ++++G
Sbjct: 147 SGQKTVNVLLSREETYADIAPVRLNSNG 174
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAFVSIMRGC+NMC++C+VPFTRGRERSR SI+ E L +K Y EV
Sbjct: 168 VRLNSNGVSAFVSIMRGCNNMCSFCVVPFTRGRERSRDAVSIIAECTDLFEKGYREVTLL 227
Query: 63 QMNVN 67
NV+
Sbjct: 228 GQNVD 232
>gi|319900623|ref|YP_004160351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
36-108]
gi|319415654|gb|ADV42765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P
36-108]
Length = 459
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K+H L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKK-KKRH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|325279819|ref|YP_004252361.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Odoribacter splanchnicus DSM 20712]
gi|324311628|gb|ADY32181.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Odoribacter splanchnicus DSM 20712]
Length = 443
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y E +GCQMNV D+EVV +IL ++G+ EADVILV TC++RENAE +V R++
Sbjct: 4 KFYIETYGCQMNVADSEVVAAILTAAGFEHTTDKNEADVILVNTCSVRENAEQRVRGRVQ 63
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +++ R L +GV+GCMAERL L E+E+ +++V GPD+Y DLP L+
Sbjct: 64 GFSEIRK-----RNPHLLVGVMGCMAERLGAKLFEEEKNVNIVVGPDAYMDLPLLIEQAA 118
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ AIN+ LS ETY DI P +
Sbjct: 119 QGKKAINIELSTTETYKDICPSRI 142
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R++E ++S FVSIMRGC+N CTYCIVP+TRGRERSR SI+ EV L + Y EV
Sbjct: 141 RIDETAISGFVSIMRGCNNFCTYCIVPYTRGRERSRSPHSIVGEVIDLQRRGYKEVTLLG 200
Query: 64 MNVN 67
NVN
Sbjct: 201 QNVN 204
>gi|374384516|ref|ZP_09642036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Odoribacter laneus YIT
12061]
gi|373228424|gb|EHP50733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Odoribacter laneus YIT
12061]
Length = 440
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 5/147 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K Y E +GCQMNV D+EVV +IL + GY + EAD+ILV TC++RENAE +V
Sbjct: 1 MGKKFYIETYGCQMNVADSEVVAAILTAKGYEHIKDRNEADIILVNTCSVRENAEQRVRG 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
R++ + +++ H L IGV+GCMAERL + L E+E+ ++++ GPD+Y DLP L+
Sbjct: 61 RVQGFSEVRK-QNPH----LLIGVMGCMAERLGEKLFEQEKNVNIIVGPDAYMDLPLLIE 115
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
+ AIN+ LS ETY DI P +
Sbjct: 116 KASRGEKAINIQLSETETYKDICPSRI 142
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R++E S+S FVSIMRGC+N CTYCIVP+TRGRERSR SI+ EV L + Y EV
Sbjct: 141 RIDETSISGFVSIMRGCNNFCTYCIVPYTRGRERSRSPHSIVSEVMDLQKRGYKEVTLLG 200
Query: 64 MNVN 67
NVN
Sbjct: 201 QNVN 204
>gi|393782574|ref|ZP_10370757.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides salyersiae CL02T12C01]
gi|392672801|gb|EIY66267.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides salyersiae CL02T12C01]
Length = 457
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYGVAGSLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELVASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVTKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|224008014|ref|XP_002292966.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
CCMP1335]
gi|220971092|gb|EED89427.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana
CCMP1335]
Length = 494
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 97/155 (62%), Gaps = 24/155 (15%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + + +GCQMNVNDT++V S L+ + + +AD++L TCAIRENAE KVW RLR
Sbjct: 2 KFHIKTYGCQMNVNDTDIVQSSLQ---FIETTDEIQADILLTNTCAIRENAESKVWHRLR 58
Query: 114 FYRSMKQIHKKHRTFPLK-------IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
RS R +PL IGVLGCMAERLK+ + + A DLV GPDSY+DLP
Sbjct: 59 ELRS------HDRNYPLSSVGDERIIGVLGCMAERLKEDMFQDGTA-DLVVGPDSYRDLP 111
Query: 167 RLLAL-------TYSNQTAINVLLSLDETYADITP 194
RL+++ T + A+NV LSLDETYA I P
Sbjct: 112 RLISVLNAPATGTLPTERAVNVQLSLDETYASIKP 146
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF-EVFG 61
+R N + VSAFVSIMRGC+NMC+YC+VPFTRGRERSR +++++DE R L ++ EV
Sbjct: 147 IRSNPNDVSAFVSIMRGCNNMCSYCVVPFTRGRERSRGLENVVDETRRLVEEEGIKEVIL 206
Query: 62 CQMNVN 67
NVN
Sbjct: 207 LGQNVN 212
>gi|319640044|ref|ZP_07994771.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
gi|345517058|ref|ZP_08796536.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. 4_3_47FAA]
gi|254833830|gb|EET14139.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. 4_3_47FAA]
gi|317388322|gb|EFV69174.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A]
Length = 456
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVVASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ +++ L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKKNKRRN----LIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 134 AGEKAINVELSTTETYREVIPSRI 157
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L+DK Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLADKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|423304436|ref|ZP_17282435.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides uniformis CL03T00C23]
gi|423310450|ref|ZP_17288434.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides uniformis CL03T12C37]
gi|392681621|gb|EIY74978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides uniformis CL03T12C37]
gi|392684765|gb|EIY78088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides uniformis CL03T00C23]
Length = 457
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLK---KKKRG--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|385809194|ref|YP_005845590.1| 2-Methylthioadenine synthetase [Ignavibacterium album JCM 16511]
gi|383801242|gb|AFH48322.1| 2-Methylthioadenine synthetase [Ignavibacterium album JCM 16511]
Length = 449
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%), Gaps = 5/140 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMN DTE+V +LK GY+ +P +AD+IL+ TC+IR+NAE +++ RL
Sbjct: 6 VYIETYGCQMNFADTEIVLGVLKKQGYTVAQNPEDADIILLNTCSIRDNAEQRIYGRLGN 65
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+++K + L +G+LGCMAERL+K L+E+++ +D+V GPD Y+ LP + + ++
Sbjct: 66 LKNLKT-----KKPELVLGILGCMAERLRKDLIEEKKIVDVVVGPDEYRRLPEYIDIAFN 120
Query: 175 NQTAINVLLSLDETYADITP 194
I V LS ETY DI P
Sbjct: 121 GDKGIGVKLSRTETYDDIEP 140
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 14/110 (12%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
ED +SA++S+MRGCD CT+C+VPFTRGRERSR + SI+ E+ LS + + EV NV
Sbjct: 143 EDGLSAWISVMRGCDKFCTFCVVPFTRGRERSRSLNSIVKEIEDLSARGFKEVTLLGQNV 202
Query: 67 N---DTEVVWSILKSSGYSKVN----------HPREADVILVMTCAIREN 103
N D E +S L ++ +KV+ HP++ L+ T A ++N
Sbjct: 203 NSYQDEENDFSDLLAAA-AKVDPSMRIRFTTSHPQDLSEKLLYTIAEQQN 251
>gi|270295132|ref|ZP_06201333.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
gi|317478131|ref|ZP_07937306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
gi|270274379|gb|EFA20240.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20]
gi|316905729|gb|EFV27508.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36]
Length = 457
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLK---KKKRG--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|237709181|ref|ZP_04539662.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752708|ref|ZP_06088277.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
3_1_33FAA]
gi|345514229|ref|ZP_08793742.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
dorei 5_1_36/D4]
gi|423230601|ref|ZP_17217005.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL02T00C15]
gi|423244310|ref|ZP_17225385.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL02T12C06]
gi|229437210|gb|EEO47287.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
dorei 5_1_36/D4]
gi|229456877|gb|EEO62598.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235894|gb|EEZ21389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp.
3_1_33FAA]
gi|392630745|gb|EIY24731.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL02T00C15]
gi|392642491|gb|EIY36257.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL02T12C06]
Length = 456
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ +++ L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKKNKRRN----LIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 134 AGEKAINVELSTTETYREVIPSRI 157
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L+ K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLAAKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|150003734|ref|YP_001298478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides
vulgatus ATCC 8482]
gi|294777449|ref|ZP_06742900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
PC510]
gi|423313126|ref|ZP_17291062.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides vulgatus CL09T03C04]
gi|229890425|sp|A6KZJ2.1|MIAB_BACV8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149932158|gb|ABR38856.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|294448517|gb|EFG17066.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus
PC510]
gi|392686340|gb|EIY79646.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides vulgatus CL09T03C04]
Length = 456
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ +++ L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKKNKRRN----LIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 134 AGEKAINVELSTTETYREVIPSRI 157
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L+DK Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLADKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|212692499|ref|ZP_03300627.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855]
gi|423240772|ref|ZP_17221886.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL03T12C01]
gi|212664974|gb|EEB25546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides dorei DSM
17855]
gi|392643734|gb|EIY37483.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides dorei CL03T12C01]
Length = 456
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ +++ L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKKNKRRN----LIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 134 AGEKAINVELSTTETYREVIPSRI 157
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L+ K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLAAKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|323343556|ref|ZP_08083783.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
33269]
gi|323095375|gb|EFZ37949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC
33269]
Length = 434
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD + + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCDTESEADAVFLNTCSVRENAENKIYNRLD 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + KK R L +GVLGCMAER+K L+E A DLVAGPDSY +LP ++A
Sbjct: 63 ALHAER---KKGR--ELILGVLGCMAERVKDDLIENHHA-DLVAGPDSYLNLPDMIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ AI++ LS ETY D+ P+ V
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRV 140
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 42/58 (72%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ FVSIMRGCDN C YCIVP+TRGRERSR ++SIL EV L DK Y EV NVN
Sbjct: 145 IGGFVSIMRGCDNFCHYCIVPYTRGRERSRDIESILREVIDLRDKHYKEVTLLGQNVN 202
>gi|376317115|emb|CCG00488.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [uncultured Flavobacteriia
bacterium]
Length = 445
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+EVV SILK GY + +A+++L+ TC+IR+ AE V ++L+ + S K+ +K
Sbjct: 1 MNFADSEVVASILKEDGYELTDKANDANLVLLNTCSIRDKAEQTVRNKLKNFNSQKKENK 60
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLL 183
LK+G+LGCMAERLK+ LL++E+ +DLV GPDSYKDLP LL NQ A+NV+L
Sbjct: 61 D-----LKVGLLGCMAERLKEKLLDEEKIVDLVVGPDSYKDLPNLLDEVEHNQRAVNVIL 115
Query: 184 SLDETYADITPKAVSTDG 201
S ETY DI+P + +G
Sbjct: 116 SKSETYGDISPVRLYNNG 133
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 16/125 (12%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++AFVSI RGCDNMCT+C+VPFTRGRERSR SIL E+ L++K Y E+
Sbjct: 127 VRLYNNGINAFVSITRGCDNMCTFCVVPFTRGRERSRNPDSILREINELNEKGYKEITLL 186
Query: 63 QMNVNDTEVVW-------SILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
NV+ +W K+S Y K+N R +D++ ++ E R+RF
Sbjct: 187 GQNVD--SYLWYGGGPKKDFKKASEYQKLNAKRFSDLLELVASNFPE-------IRIRFS 237
Query: 116 RSMKQ 120
S Q
Sbjct: 238 TSNPQ 242
>gi|371778147|ref|ZP_09484469.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anaerophaga
sp. HS1]
Length = 464
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y E +GCQMNV D+EVV SI++ GY+ + A+ I + TC+IRENAE +V R+R
Sbjct: 24 QLYIETYGCQMNVADSEVVASIMQMDGYTTTSEVSGANAIFINTCSIRENAEQRVLGRIR 83
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++++K+ + L +GV+GCMAER K+ LL ++ +DLVAGPD+Y DLP L+++
Sbjct: 84 EFKALKK-----KNPSLILGVIGCMAERAKEELL--DEGVDLVAGPDAYLDLPNLVSMAE 136
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ AINV LS +TY DI PK
Sbjct: 137 QGEKAINVELSETQTYRDIIPK 158
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL +++SAFVSIMRGC+N C+YC+VP+TRGRERSR SI E+ L K Y E+
Sbjct: 159 RLGPNNISAFVSIMRGCNNFCSYCVVPYTRGRERSRDPFSIKHEIEDLVKKGYKEITLLG 218
Query: 64 MNVN 67
NVN
Sbjct: 219 QNVN 222
>gi|317474690|ref|ZP_07933964.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
1_2_48FAA]
gi|316909371|gb|EFV31051.1| MiaB family RNA modification enzyme [Bacteroides eggerthii
1_2_48FAA]
Length = 456
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GY + EAD + + TC+IR+NAE K+ +RL
Sbjct: 20 KLFIETYGCQMNVADSEVIASVMQMAGYFVADTLEEADAVFMNTCSIRDNAEQKILNRLE 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 80 FFHSLKKKKKN-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 134 AGEKAINVELSTTETYRDVIPSRI 157
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>gi|387132633|ref|YP_006298605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella intermedia 17]
gi|386375481|gb|AFJ07986.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella intermedia 17]
Length = 443
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSIRENAENKIYNRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K KK R L GVLGCMAER++K L+E A +LV GPDSY +LP ++A
Sbjct: 63 TLYAEK---KKGREVIL--GVLGCMAERVRKDLIENHHA-NLVCGPDSYLNLPEMIARCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A++V LS ETY DI P+ +
Sbjct: 117 NGHNAMDVDLSTTETYRDIVPQRI 140
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L D+ + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILREVKDLHDRGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|333379845|ref|ZP_08471563.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
[Dysgonomonas mossii DSM 22836]
gi|332884749|gb|EGK05005.1| Dimethylallyladenosine tRNA methylthiotransferase miaB
[Dysgonomonas mossii DSM 22836]
Length = 456
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 5/141 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ GY+ + EAD + V TC+IR+NAE +V RL
Sbjct: 19 KLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEEADAVFVNTCSIRDNAEQRVIQRLD 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ ++K+ K + + IGVLGCMAER+K+ L +K +D+V GPD+Y DLP L+
Sbjct: 79 YFNALKRKKKPN----MIIGVLGCMAERVKEELHDKHH-VDVVVGPDAYLDLPNLVGAAE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 NGNKAINVQLSKTETYKDVIP 154
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R+ + +S F+SIMRGCD +C+YCIVP+TRGRERSR QSIL+E+ L DK + E
Sbjct: 155 LRIGGNHISGFISIMRGCDKVCSYCIVPYTRGRERSRSPQSILNELENLRDKGFKEATLL 214
Query: 63 QMNVN 67
NVN
Sbjct: 215 GQNVN 219
>gi|288800434|ref|ZP_06405892.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
299 str. F0039]
gi|288332647|gb|EFC71127.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
299 str. F0039]
Length = 441
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY ++ EAD I + TC++RENAE K+++RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMQMAGYEMCDNEAEADAIFMNTCSVRENAENKIYNRLD 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++ +K L +GVLGCMAER+K L+ A DLVAGPDSY +LP ++A
Sbjct: 63 TLHAEQKKGRK-----LILGVLGCMAERVKDDLINNHHA-DLVAGPDSYLNLPDMIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ AI++ LS ETY DI P+ ++
Sbjct: 117 TGSKAIDIELSKTETYKDIVPQRIA 141
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + FVSIMRGCDN C YCIVP+TRGRERSR ++S+L EVR L + Y EV
Sbjct: 139 RIALSKIGGFVSIMRGCDNFCHYCIVPYTRGRERSRDVESVLAEVRDLCKQGYREVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|255693332|ref|ZP_05417007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
DSM 17565]
gi|260620909|gb|EEX43780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii
DSM 17565]
Length = 455
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +R
Sbjct: 17 SKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNR 76
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 77 LEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAA 130
Query: 172 TYSNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 131 VEAGEKAINVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|393785907|ref|ZP_10374051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides nordii CL02T12C05]
gi|392661021|gb|EIY54618.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides nordii CL02T12C05]
Length = 457
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVADSLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKKH-----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 133 AGEKAINVELSTTETYREVIPSRI 156
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>gi|303290697|ref|XP_003064635.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453661|gb|EEH50969.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 530
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 11/147 (7%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+ E +GCQMNV+D+E+V S+L+S+ Y V+ AD +LV TCAIR+ AE K+W RL
Sbjct: 27 AFIETYGCQMNVSDSEIVASVLQSNRYVVVDDVDAADAVLVNTCAIRDGAEAKIWHRL-- 84
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY- 173
R +K+ K + P+ +GVLGCM ERLK LLE + DLVAGPD+Y+DLPRL+ +
Sbjct: 85 -RQLKREWKDAKNAPV-VGVLGCMGERLKHKLLETDGLADLVAGPDAYRDLPRLIDVARG 142
Query: 174 ------SNQTAINVLLSLDETYADITP 194
S + AINV L DETYAD+ P
Sbjct: 143 AWSGGGSVEAAINVQLRRDETYADVKP 169
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR N+ SAFVSIMRGC+NMC +CIVPFTRGRERSRP SI+DEV+ L D+ EV
Sbjct: 170 VRANDAGPSAFVSIMRGCNNMCAFCIVPFTRGRERSRPRASIVDEVKRLVDEGRKEVVLL 229
Query: 63 QMNVN 67
NVN
Sbjct: 230 GQNVN 234
>gi|423300993|ref|ZP_17279017.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides finegoldii CL09T03C10]
gi|408472328|gb|EKJ90856.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides finegoldii CL09T03C10]
Length = 512
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +R
Sbjct: 69 SKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNR 128
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 129 LEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAA 182
Query: 172 TYSNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 183 VEAGEKAINVELSTTETYRDVIPSRI 208
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 207 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|429725786|ref|ZP_19260603.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
473 str. F0040]
gi|429148923|gb|EKX91919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
473 str. F0040]
Length = 482
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 94/142 (66%), Gaps = 6/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+ E +GCQMNV D+EVV S+++ +GY +AD + + TC++R+NAE K+ RL
Sbjct: 3 KLLIETYGCQMNVADSEVVASVMRMAGYEPCEDIDQADAVFLNTCSVRDNAEQKIIHRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++ + KK R L +GVLGCMAER+K LLEK A DLVAGPD+Y LP L+A
Sbjct: 62 --QALHALRKKGRR--LILGVLGCMAERVKDELLEKHHA-DLVAGPDAYLSLPDLVAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPK 195
Q AIN+ LSL ETY DI P+
Sbjct: 117 VGQKAINIDLSLTETYGDIMPE 138
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M R +S FVSI RGC+N C +CIVP+TRGRERSR +QSI++E L + + EV
Sbjct: 136 MPERFCGSKISGFVSITRGCNNFCHFCIVPYTRGRERSRNVQSIINECLDLQKRGFKEVT 195
Query: 61 GCQMNVN 67
NVN
Sbjct: 196 LLGQNVN 202
>gi|336403499|ref|ZP_08584214.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. 1_1_30]
gi|295085878|emb|CBK67401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens
XB1A]
gi|335945829|gb|EGN07636.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
sp. 1_1_30]
Length = 460
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E++ + K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE
Sbjct: 14 EMKDDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQ 73
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+ +RL F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP
Sbjct: 74 KILNRLEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLP 127
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
L+A + + AINV LS ETY D+ P +
Sbjct: 128 DLIAAVETGEKAINVELSTTETYRDVIPSRI 158
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|423290887|ref|ZP_17269736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides ovatus CL02T12C04]
gi|423293833|ref|ZP_17271960.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides ovatus CL03T12C18]
gi|392664752|gb|EIY58289.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides ovatus CL02T12C04]
gi|392677791|gb|EIY71207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides ovatus CL03T12C18]
Length = 460
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E++ + K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE
Sbjct: 14 EMKDDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQ 73
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+ +RL F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP
Sbjct: 74 KILNRLEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLP 127
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
L+A + + AINV LS ETY D+ P +
Sbjct: 128 DLIAAVETGEKAINVELSTTETYRDVIPSRI 158
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|237722101|ref|ZP_04552582.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371177|ref|ZP_06617713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
3f]
gi|299145161|ref|ZP_07038229.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
gi|229448970|gb|EEO54761.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633738|gb|EFF52291.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC
3f]
gi|298515652|gb|EFI39533.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23]
Length = 457
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E++ + K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE
Sbjct: 14 EMKDDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQ 73
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+ +RL F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP
Sbjct: 74 KILNRLEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLP 127
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
L+A + + AINV LS ETY D+ P +
Sbjct: 128 DLIAAVETGEKAINVELSTTETYRDVIPSRI 158
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVTKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|348664547|gb|EGZ04402.1| hypothetical protein PHYSODRAFT_536500 [Phytophthora sojae]
gi|348671225|gb|EGZ11046.1| hypothetical protein PHYSODRAFT_317995 [Phytophthora sojae]
Length = 597
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 91/135 (67%), Gaps = 3/135 (2%)
Query: 63 QMN--VNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ 120
+MN V + +V +IL GYS + ADV+L+ TCA+R+NAE K+W+RL R +K
Sbjct: 74 EMNFPVAPSSIVRAILLEGGYSPASSADAADVVLINTCAVRDNAEAKIWNRLESLRQVKA 133
Query: 121 IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAI 179
+ + +GVLGCMAERLK LLE ++ +DLV GPD+Y+D+P LL + + S + A+
Sbjct: 134 KLLRKKQKVQTVGVLGCMAERLKTKLLESDKMVDLVVGPDAYRDIPNLLRVVHGSGEAAV 193
Query: 180 NVLLSLDETYADITP 194
NV LSLDETYADI P
Sbjct: 194 NVQLSLDETYADIAP 208
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + S SAFVSIMRGC+NMC+YCIVPFTRGRERSR + SI+DEVRALSD+ EV
Sbjct: 209 VRADPHSPSAFVSIMRGCNNMCSYCIVPFTRGRERSRVISSIVDEVRALSDQGVKEVVLL 268
Query: 63 QMNVN---DTEVVWSILKSSGY 81
NVN D + + K GY
Sbjct: 269 GQNVNSYHDKKSEGAAEKGRGY 290
>gi|336412992|ref|ZP_08593345.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
ovatus 3_8_47FAA]
gi|335943038|gb|EGN04880.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Bacteroides
ovatus 3_8_47FAA]
Length = 457
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E++ + K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE
Sbjct: 14 EMKDDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQ 73
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+ +RL F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP
Sbjct: 74 KILNRLEFFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLP 127
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
L+A + + AINV LS ETY D+ P +
Sbjct: 128 DLIAAVETGEKAINVELSTTETYRDVIPSRI 158
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|383115697|ref|ZP_09936452.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. D2]
gi|313694899|gb|EFS31734.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bacteroides sp. D2]
Length = 460
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 21 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 81 FFHSLKKKKKH-----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 135 TGEKAINVELSTTETYRDVIPSRI 158
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 157 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 216
Query: 64 MNVN 67
NVN
Sbjct: 217 QNVN 220
>gi|260910435|ref|ZP_05917107.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
472 str. F0295]
gi|260635511|gb|EEX53529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
472 str. F0295]
Length = 440
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV ++++ +GY EAD I + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEAEADAIFMNTCSVRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L GVLGCMAER+K L+E A LVAGPDSY +LP ++A
Sbjct: 62 --DTLHAEQKKGRKVIL--GVLGCMAERVKDDLIENHHA-QLVAGPDSYLNLPDMIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ AI++ LS ETY DI P+ V+
Sbjct: 117 AGNKAIDIALSKTETYKDIVPQRVA 141
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 43/58 (74%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGCDN C YCIVP+TRGRERSR + SIL+EVR L + Y EV NVN
Sbjct: 145 ISGFVSIMRGCDNFCHYCIVPYTRGRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVN 202
>gi|402846548|ref|ZP_10894860.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267949|gb|EJU17339.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 466
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 93/145 (64%), Gaps = 5/145 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A + +VY E +GCQMNV D+EVV SI++ G+ P AD I + TC++R+NAE KV
Sbjct: 15 ATARRVYIETYGCQMNVADSEVVASIMQMDGFHLTEDPELADAIFLNTCSVRDNAEQKVL 74
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+R+ +Y S+++ ++ IGVLGCMAER K L+EK +DLV GPDSY DLP L+
Sbjct: 75 NRIAYYHSIRRKKRRRII----IGVLGCMAERAKGELIEKHH-VDLVVGPDSYLDLPNLV 129
Query: 170 ALTYSNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 130 GAVERGEKAINVQLSTTETYKDVLP 154
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
++S FVSIMRGC+N C+YCIVP+TRGRERSR ++SI+ EV+ L K Y E+ NVN
Sbjct: 161 NLSGFVSIMRGCNNFCSYCIVPYTRGRERSRELESIIREVKDLEAKGYREITLLGQNVNS 220
Query: 69 TEVV 72
V
Sbjct: 221 YRFV 224
>gi|303236111|ref|ZP_07322713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
FB035-09AN]
gi|302483693|gb|EFL46686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens
FB035-09AN]
Length = 443
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY EAD I + TC+IRENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K +K R L GVLGCMAER++K L+E A +LV GPDSY +LP ++A
Sbjct: 63 TLYAEK---RKGREVIL--GVLGCMAERVRKDLIENHYA-NLVCGPDSYLNLPEMIARCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A++V LS ETY DI P+ +
Sbjct: 117 NGHNAMDVDLSTTETYRDIVPQRI 140
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L D+ + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILREVKDLHDRGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|340350121|ref|ZP_08673122.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella nigrescens
ATCC 33563]
gi|339609604|gb|EGQ14474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella nigrescens
ATCC 33563]
Length = 464
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
L K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++
Sbjct: 21 LMKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSIRENAENKIYN 80
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + K +K R L GVLGCMAER++K L++ A +LV GPDSY +LP ++A
Sbjct: 81 RLETLYAEK---RKGREVIL--GVLGCMAERVRKDLIDNHHA-NLVCGPDSYLNLPEMIA 134
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
+ A++V LS ETY DI P+ +
Sbjct: 135 RCENGHNAMDVDLSTTETYRDIVPQRI 161
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L D+ + EV
Sbjct: 160 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILREVKDLHDRGFKEVTLLG 219
Query: 64 MNVN 67
NVN
Sbjct: 220 QNVN 223
>gi|390594092|gb|EIN03507.1| hypothetical protein PUNSTDRAFT_147038 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 590
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 98/159 (61%), Gaps = 23/159 (14%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y EV+GCQMN D++++ IL +GY+ +AD++L++TCAIRENAE K+W RLR
Sbjct: 49 YLEVYGCQMNGADSDILNRILVDAGYTPSPTASDADIVLLITCAIRENAESKIWRRLREL 108
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLE----------KEQALDLVAGPDSYKDL 165
+ R K+G+LGCMAERLK SLLE E+ +D+V GPD+Y+ L
Sbjct: 109 APL-------RARGGKVGLLGCMAERLKLSLLEGKVDEKTGKRDERMVDVVCGPDAYRSL 161
Query: 166 PRLLALTY----SNQTAINVLLSLDETYADITPKAVSTD 200
PRLL + A NV LS DETYADITP +STD
Sbjct: 162 PRLLGQVEEEGDGGRGAANVQLSADETYADITP--LSTD 198
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 44/57 (77%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+A ++IMRGC+NMC+YCIVPFTRGRERSRP+ SILDEVR LS E+ NVN
Sbjct: 203 TANLTIMRGCNNMCSYCIVPFTRGRERSRPITSILDEVRHLSSIGIKEITLLGQNVN 259
>gi|282879448|ref|ZP_06288185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
35310]
gi|281298420|gb|EFA90852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC
35310]
Length = 497
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 103/175 (58%), Gaps = 7/175 (4%)
Query: 22 NMCTYCIVP-FTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSG 80
N C + VP F R + + + K+Y E +GCQMNV D+EVV S+++ +G
Sbjct: 18 NPCHWVDVPLFMRFNQHVEDFLYLCNPKPKTMKKLYIETYGCQMNVADSEVVASVMQMAG 77
Query: 81 YSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140
Y + EAD I + TC++RENAE K+++RL S+ KK R L +GVLGCMAE
Sbjct: 78 YEICDKEEEADAIFLNTCSVRENAENKIYNRL---DSLHAERKKGRN--LILGVLGCMAE 132
Query: 141 RLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
R+K LL+ DLV GPDSY +LP ++A + AI++ LS ETY D+ P+
Sbjct: 133 RVKDDLLDNHHT-DLVCGPDSYLNLPDMIAQAETGNKAIDIELSKTETYKDVVPQ 186
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL + FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EVR L DK E+
Sbjct: 187 RLLIGKIGGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILREVRDLRDKHCKEITLLG 246
Query: 64 MNVN 67
NVN
Sbjct: 247 QNVN 250
>gi|340351367|ref|ZP_08674287.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella pallens ATCC
700821]
gi|339618734|gb|EGQ23326.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella pallens ATCC
700821]
Length = 464
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 6/149 (4%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+ L ++Y E +GCQMNV D+EVV S++K +GY +AD I + TC+IRENAE K+
Sbjct: 19 KKLMKRLYIETYGCQMNVADSEVVASVMKMAGYDVCEDESQADAIFINTCSIRENAENKI 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
++RL + K +K R L GVLGCMAER++K L+E A +LV GPDSY +LP +
Sbjct: 79 YNRLETLYAEK---RKGREVIL--GVLGCMAERVRKDLIENHHA-NLVCGPDSYLNLPEM 132
Query: 169 LALTYSNQTAINVLLSLDETYADITPKAV 197
+A + A++V LS ETY D+ P+ +
Sbjct: 133 IARCENGHNAMDVDLSTTETYKDVVPQRI 161
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L D+ + EV
Sbjct: 160 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILREVKDLHDRGFKEVTLLG 219
Query: 64 MNVN 67
NVN
Sbjct: 220 QNVN 223
>gi|212550847|ref|YP_002309164.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|229890446|sp|B6YRD1.1|MIAB_AZOPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212549085|dbj|BAG83753.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 449
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 101/145 (69%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ E +GCQMN+ D+E+V +I++ G+ + EADV+L+ TC++RENAE K++ RL+
Sbjct: 14 RIFIETYGCQMNIADSEIVIAIVQMDGFEYTENILEADVVLINTCSVRENAEKKIFSRLQ 73
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K+++ L IGVLGCMA+R++++L+++ +DLV GPDSY DLP L+
Sbjct: 74 YFQSLKK--KRNQ---LIIGVLGCMAKRIRETLIQQYH-VDLVVGPDSYMDLPHLIGTVE 127
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
AIN+ LS E Y I P +S
Sbjct: 128 KGAKAININLSSTEVYKGIVPLKLS 152
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
++L+ +S F+SI+RGC+N C+YCIVP+TRGRERSR +SIL+E+ L ++ Y EV
Sbjct: 149 LKLSRIKISGFISIIRGCNNFCSYCIVPYTRGRERSRDPKSILNELHILKEQGYKEVILL 208
Query: 63 QMNVN 67
NVN
Sbjct: 209 GQNVN 213
>gi|445116928|ref|ZP_21378679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella nigrescens
F0103]
gi|444839955|gb|ELX67000.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella nigrescens
F0103]
Length = 464
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
L K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++
Sbjct: 21 LMKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSIRENAENKIYN 80
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + K KK R L GVLGCMAER++K L++ A +LV GPDSY +LP ++A
Sbjct: 81 RLETLYAEK---KKGREVIL--GVLGCMAERVRKDLIDNHHA-NLVCGPDSYLNLPEMIA 134
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
+ A++V LS ETY +I P+ +
Sbjct: 135 RCENGHNAMDVDLSTTETYRNIVPQRI 161
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L D+ + EV
Sbjct: 160 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILREVKDLHDRGFKEVTLLG 219
Query: 64 MNVN 67
NVN
Sbjct: 220 QNVN 223
>gi|429739623|ref|ZP_19273372.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella saccharolytica
F0055]
gi|429156280|gb|EKX98914.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella saccharolytica
F0055]
Length = 438
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + +AD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYELCENEADADAIFMNTCSVRENAENKIYRRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L GVLGCMAER+K LLE A LVAGPDSY +LP ++A
Sbjct: 62 --DTLHAEQKKGRRVIL--GVLGCMAERVKDDLLENHHA-QLVAGPDSYLNLPDMIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ AI++ LS ETY D+ P+ V+
Sbjct: 117 AGHKAIDIELSKTETYKDVIPQRVA 141
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGCDN C YCIVP+TRGRERSR + SI++EV L + Y EV NVN
Sbjct: 145 ISGFVSIMRGCDNFCHYCIVPYTRGRERSRDVTSIINEVLDLQRQGYKEVTLLGQNVN 202
>gi|359405402|ref|ZP_09198171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella stercorea DSM
18206]
gi|357558705|gb|EHJ40186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella stercorea DSM
18206]
Length = 443
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI++ +GY + EAD I + TC+IRENAE K++ RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASIMQMAGYELCENEAEADAIFLNTCSIRENAENKIYGRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K KK R L +GVLGCMAER+++ L++ A +LV GPDSY +LP ++A
Sbjct: 63 TLHAEK---KKGRE--LILGVLGCMAERVREDLIQNHFA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ Q A+N+ LS ETY D+ P+ +
Sbjct: 117 NGQNAMNIELSTTETYRDVVPQRI 140
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EVR L D+ + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILREVRDLHDRGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|406660591|ref|ZP_11068722.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Cecembia
lonarensis LW9]
gi|405555736|gb|EKB50748.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Cecembia
lonarensis LW9]
Length = 487
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E S K+Y E +GCQMN +D+E+V SI+K +G+ + +ADVI + TC+IRE AE
Sbjct: 26 EENTGKSKKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFEQADVIFLNTCSIREKAE 85
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
V +RL + ++K+ + L IGVLGCMAERLK+ LLE+E+ +D+V GPD+Y+DL
Sbjct: 86 QTVRNRLNQFNTVKKNKPE-----LTIGVLGCMAERLKEKLLEEEKIVDVVVGPDAYRDL 140
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L+A +N LS +ETYADI+P ++++G
Sbjct: 141 PNLVASAEEGNKGVNTFLSREETYADISPVRLNSNG 176
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + V+AF+SIMRGCDNMC++C+VPFTRGRERSR SI++E + L +K Y EV
Sbjct: 170 VRLNSNGVTAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSIVNEAKELFEKGYKEVTLL 229
Query: 63 QMNVN 67
NV+
Sbjct: 230 GQNVD 234
>gi|343085712|ref|YP_004775007.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyclobacterium
marinum DSM 745]
gi|342354246|gb|AEL26776.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Cyclobacterium marinum DSM 745]
Length = 486
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
+E S ++Y E +GCQMN +D+E+V SI+K +G+ + + ADVI + TC+IR+ AE
Sbjct: 26 EENTGKSRRLYIESYGCQMNFSDSEIVASIMKETGFDTTSDYKNADVIFLNTCSIRDKAE 85
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
V RL + +K + + LKIGVLGCMAERLK+ LLE+E+ +D+V GPD+Y+DL
Sbjct: 86 QTVRKRLSQFNQIKGANPE-----LKIGVLGCMAERLKEKLLEEEKLVDMVVGPDAYRDL 140
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L+ Q IN LS +ETYADI+P ++++G
Sbjct: 141 PNLVGQVEEGQKGINTFLSREETYADISPVRLNSNG 176
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR SI E + L D Y EV
Sbjct: 170 VRLNSNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSITKEAQELFDNGYKEVTLL 229
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
NV+ + WS + + +++N +EA++ V+ + KV +LR
Sbjct: 230 GQNVDSYK--WS-PQENNKARLNK-KEAEITEVVHFSDLLEMVAKVNPKLR 276
>gi|288928957|ref|ZP_06422803.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
317 str. F0108]
gi|288329941|gb|EFC68526.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
317 str. F0108]
Length = 440
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV ++++ +GY +AD I + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEADADAIFMNTCSVRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L GVLGCMAER+K L+E A LVAGPDSY +LP ++A
Sbjct: 62 --DTLHAEQKKGRKVIL--GVLGCMAERVKDDLIENHHA-QLVAGPDSYLNLPDMIAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ AI++ LS ETY D+ PK V+
Sbjct: 117 AGNKAIDIALSKTETYRDVVPKRVA 141
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 45/63 (71%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDT 69
+S FVSIMRGCDN C YCIVP+TRGRERSR + SIL+EVR L + Y EV NVN
Sbjct: 145 ISGFVSIMRGCDNFCHYCIVPYTRGRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVNSY 204
Query: 70 EVV 72
+ V
Sbjct: 205 QFV 207
>gi|308800958|ref|XP_003075260.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
gi|116061814|emb|CAL52532.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri]
Length = 548
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
++V+ E +GCQMN ND++VV ++L + ++ + +A V+LV TCAIRENAE +VW RL
Sbjct: 43 ERVFVETYGCQMNANDSDVVRALLVEAKHAIASSASDATVVLVNTCAIRENAESRVWTRL 102
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL-DLVAGPDSYKDLPRLL-- 169
R R+ ++ +GVLGCMAERLK +L E+ L D+V GPD+Y+D+ RLL
Sbjct: 103 RQLRAERRAPGSRLR---AVGVLGCMAERLKGKILSAEEGLADMVVGPDAYRDVVRLLRV 159
Query: 170 --------------ALTYSNQTAINVLLSLDETYADITP 194
A T ++ +NV+LSLDETYAD+ P
Sbjct: 160 AREESDRRRQRETRANTLDDEDRMNVMLSLDETYADVFP 198
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R + S A+VS+ RGCDNMC +C+VPFTRGRERSRP +S+L+E R L D+ E+
Sbjct: 199 LRADPMSPQAYVSVTRGCDNMCAFCVVPFTRGRERSRPFESVLEECRKLIDQGVKEITLL 258
Query: 63 QMNVN 67
NVN
Sbjct: 259 GQNVN 263
>gi|261878931|ref|ZP_06005358.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
17361]
gi|270334514|gb|EFA45300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM
17361]
Length = 452
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K+Y E +GCQMNV D+EVV S++K +GY ++ EAD I + TC+IRENAE K++
Sbjct: 1 MNKKLYIETYGCQMNVADSEVVASVMKMAGYELTDNEDEADAIFLNTCSIRENAENKIYH 60
Query: 111 RLRFYRSMKQ---IHKKHRTFPLKI-GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
RL + ++ + ++ P I GVLGCMAER+K L++ A +LV GPD+Y +LP
Sbjct: 61 RLDALHAEQRKRAVETQNPKCPTPILGVLGCMAERVKDDLVKNHHA-NLVCGPDAYLNLP 119
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
++A Q A++V LS ETY DI P+ +
Sbjct: 120 EMIAAVEMGQEAVDVQLSTTETYRDIIPQRI 150
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L DK + EV
Sbjct: 149 RIGGNRISGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVHDLHDKGFKEVTLLG 208
Query: 64 MNVN 67
NVN
Sbjct: 209 QNVN 212
>gi|330997206|ref|ZP_08321059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
xylaniphila YIT 11841]
gi|329571001|gb|EGG52708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella
xylaniphila YIT 11841]
Length = 441
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY EAD + + TC++R+NAE K+ +RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + +K R L IGVLGCMAER+K+ L+E +DLVAGPD+Y LP L+A
Sbjct: 62 --EALHALRRKGRH--LVIGVLGCMAERVKEELIENHH-VDLVAGPDAYLSLPDLIAQVE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
AINV LS+ ETY D+ P+ V
Sbjct: 117 LGHKAINVELSVTETYRDVIPQRV 140
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L + Y EV NVN
Sbjct: 145 ISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLKKRGYKEVTLLGQNVN 202
>gi|219116801|ref|XP_002179195.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409086|gb|EEC49018.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 516
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 21/153 (13%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + FGCQMNVND+++V ++L G+++ +ADV+L TCAIRE AE KVW RLR
Sbjct: 5 KFHLRTFGCQMNVNDSDIVRALLLERGFTETLDETDADVLLTNTCAIREGAEQKVWHRLR 64
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL---- 169
R + K +GVLGCMAERL+ L ++ DLV GPD+Y+DLPRL+
Sbjct: 65 ELRGKFKSRK-------VVGVLGCMAERLQTDLF-RDGLADLVVGPDAYRDLPRLMRDLL 116
Query: 170 --------ALTYSNQTAINVLLSLDETYADITP 194
L NQ A NV LSLDETYAD+TP
Sbjct: 117 REPDDDDAELGRVNQ-AFNVQLSLDETYADVTP 148
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + +SVSAFVSI RGC N C++CIVPFTRG+ERSRP S++ E++ L ++ EV
Sbjct: 149 VRRHGNSVSAFVSIQRGCANRCSFCIVPFTRGQERSRPFASVVGEIQQLYEQGVKEVTLL 208
Query: 63 QMNVND----TEVVWSILKSSGYSKVN 85
NVN +E S+ SGY N
Sbjct: 209 GQNVNSYHDTSETALSVRPDSGYRMSN 235
>gi|332881524|ref|ZP_08449173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|357045600|ref|ZP_09107235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella clara YIT
11840]
gi|332680522|gb|EGJ53470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|355531462|gb|EHH00860.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella clara YIT
11840]
Length = 441
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY EAD + + TC++R+NAE K+ +RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + +K R L IGVLGCMAER+K+ L+E +D+VAGPD+Y LP L+A
Sbjct: 62 --EALHALRRKGRH--LIIGVLGCMAERVKEELIENHH-VDVVAGPDAYLSLPDLIAQVE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
AINV LS+ ETY D+ P+ V
Sbjct: 117 LGHKAINVELSVTETYKDVIPQRV 140
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L + Y EV NVN
Sbjct: 145 ISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLKKRGYKEVTLLGQNVN 202
>gi|340347153|ref|ZP_08670266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella dentalis DSM
3688]
gi|433652359|ref|YP_007278738.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Prevotella dentalis DSM 3688]
gi|339610236|gb|EGQ15096.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella dentalis DSM
3688]
gi|433302892|gb|AGB28708.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Prevotella dentalis DSM 3688]
Length = 467
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K++ E +GCQMNV D+EVV S+++ +GY ++ EAD I + TC+IRENAE K++
Sbjct: 1 MNKKLFIETYGCQMNVADSEVVASVMQMAGYELTDNEDEADAIFLNTCSIRENAENKIYH 60
Query: 111 RLRFYRSMK----QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
RL +++ +I P+ +GVLGCMAER+K L++ A +LV GPDSY +LP
Sbjct: 61 RLDTLHALRNSKFRIQNSKSAGPI-LGVLGCMAERVKDDLVKNHHA-NLVCGPDSYLNLP 118
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAV 197
++A + A++V LS ETY D+ P+ +
Sbjct: 119 EMMAAAENGLPAVDVTLSTTETYRDVIPQRI 149
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EVR L DK + EV
Sbjct: 148 RIGGNRISGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVRDLHDKGFKEVTLLG 207
Query: 64 MNVN 67
NVN
Sbjct: 208 QNVN 211
>gi|357043304|ref|ZP_09104999.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
histicola F0411]
gi|355368478|gb|EHG15895.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
histicola F0411]
Length = 442
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 8/145 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+H + R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 -----DTLHAEQRKGRELILGVLGCMAERVRNDLIQNHHA-NLVCGPDSYLNLPDMIAQC 115
Query: 173 YSNQTAINVLLSLDETYADITPKAV 197
+ + A+++ LS ETY D+ P+ +
Sbjct: 116 ENGRNAMDIELSTTETYRDVIPQRI 140
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVQDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|390944920|ref|YP_006408681.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Belliella baltica DSM 15883]
gi|390418348|gb|AFL85926.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Belliella baltica DSM 15883]
Length = 485
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE + K+Y E +GCQMN +D+E+V SI+K +G+ + ++ADVI + TC+IRE AE
Sbjct: 26 DENTGKAKKLYIESYGCQMNFSDSEIVASIMKDNGFDTTSDFQQADVIFLNTCSIREKAE 85
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
V RL + ++K+ + L IGVLGCMAERLK+ LLE+E+ +D+V GPD+Y+DL
Sbjct: 86 LTVRKRLSQFNNIKKNKPE-----LTIGVLGCMAERLKEKLLEEEKLVDVVVGPDAYRDL 140
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
P L++ +N LS +ETYADI+P ++++G
Sbjct: 141 PNLVSEAEDGNKGVNTFLSREETYADISPVRLNSNG 176
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR S++ E + L DK + EV
Sbjct: 170 VRLNSNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPHSVVREAQELFDKGFKEVTLL 229
Query: 63 QMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
NV+ + WS + + +++N + I+ + A+ R+RF S
Sbjct: 230 GQNVDSYK--WS-PEENNKARLNKKDDVSTIINFAHLLEMVAQVSPKLRVRFSTS 281
>gi|357061061|ref|ZP_09121822.1| hypothetical protein HMPREF9332_01379 [Alloprevotella rava F0323]
gi|355375286|gb|EHG22574.1| hypothetical protein HMPREF9332_01379 [Alloprevotella rava F0323]
Length = 454
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 93/148 (62%), Gaps = 6/148 (4%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A +Y E +GCQMNV D+EVV S++K +GY + EAD + + TC++R+ AE ++
Sbjct: 13 AAMKHLYIETYGCQMNVADSEVVASVMKMAGYEPTENIDEADAVFLNTCSVRDKAEQRII 72
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL +++ ++ L IGVLGCMAER+K+ LL + A DLVAGPD+Y LP L+
Sbjct: 73 HRLDELNGLRKHGRQ-----LIIGVLGCMAERVKEGLLNEHHA-DLVAGPDAYLTLPDLV 126
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAV 197
A + AIN LSL ETY DI P+ V
Sbjct: 127 AQAETGHKAINTELSLTETYRDIVPERV 154
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSI RGC+N C YCIVP+TRGRERSR ++SIL EV L + + EV NVN
Sbjct: 159 LSGFVSITRGCNNFCHYCIVPYTRGRERSRDLESILQEVNDLHARGFKEVTLLGQNVN 216
>gi|288801850|ref|ZP_06407292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
D18]
gi|302346093|ref|YP_003814446.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
ATCC 25845]
gi|288335892|gb|EFC74325.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
D18]
gi|302149644|gb|ADK95906.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica
ATCC 25845]
Length = 442
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSVRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 --EALHAEQKKGRD--LILGVLGCMAERVRDDLIQNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGTNALDIELSTTETYRDVIPQRI 140
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVKDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|327312819|ref|YP_004328256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
F0289]
gi|326945460|gb|AEA21345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola
F0289]
Length = 442
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 --EALHAEQKKGRR--LILGVLGCMAERVRDDLIQNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRI 140
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVHDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|345884806|ref|ZP_08836206.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
sp. C561]
gi|345042305|gb|EGW46406.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
sp. C561]
Length = 442
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY EAD I + TC++RENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSVRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 --EALHAEQKKGRD--LILGVLGCMAERVRNDLIQNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGTNAMDIELSTTETYRDVIPQRI 140
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVKDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|325859700|ref|ZP_08172830.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
18C-A]
gi|325482626|gb|EGC85629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS
18C-A]
Length = 442
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 --EALHAEQKKGRR--LILGVLGCMAERVRDDLIQNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRI 140
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVHDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|282880437|ref|ZP_06289144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
CRIS 5C-B1]
gi|281305540|gb|EFA97593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis
CRIS 5C-B1]
Length = 451
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY EAD I + TC++RENAE K+++RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMQMAGYELCEQEEEADAIFLNTCSVRENAENKIYNRLD 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + KK R L +GVLGCMAER+K LL DLV GPDSY +LP ++A
Sbjct: 63 ALHAER---KKGRN--LILGVLGCMAERVKDDLLNNHHT-DLVCGPDSYLNLPDMMAQAE 116
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ AI++ LS ETY D+ P+
Sbjct: 117 TGNKAIDIELSKTETYKDVVPQ 138
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EVR L DK Y E+
Sbjct: 139 RLMIGKVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDIESILREVRDLRDKHYKEITLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|325268417|ref|ZP_08135049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
DSM 16608]
gi|324989271|gb|EGC21222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis
DSM 16608]
Length = 442
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 62 --EALHAEQKKGRG--LILGVLGCMAERVRDDLIQNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRI 140
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L DK + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVHDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|228471151|ref|ZP_04055970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
60-3]
gi|228307091|gb|EEK16165.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis
60-3]
Length = 452
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 99/153 (64%), Gaps = 9/153 (5%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ + V S +VY E +GCQMNV D+E++ + ++ +GY + EAD +L+ TC++R+N
Sbjct: 1 MTERVEQESKRVYIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDN 60
Query: 104 AEGKVWDRLRFYRSMKQIHKKHR--TFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161
AE LR R + ++ + R P +GVLGCMAER++++L++ +DLVAGPD+
Sbjct: 61 AE------LRIVRRLDNLNGQRRRSGHPQIVGVLGCMAERVQETLIQN-HGVDLVAGPDA 113
Query: 162 YKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
Y DLP L+A + + AI++ LS ETY+D+ P
Sbjct: 114 YTDLPHLIAAAEAGEPAISIELSKSETYSDVIP 146
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL +S FVSIMRGCDN CTYCIVP+TRGRERSR +SI+ EV+ ++ + Y EV
Sbjct: 147 IRLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRERSRDPESIIREVQRMAQEGYREVTLL 206
Query: 63 QMNVNDTEVVWSILKSSGYS 82
NVN W + Y+
Sbjct: 207 GQNVNS--YCWHTETGASYT 224
>gi|336397805|ref|ZP_08578605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella
multisaccharivorax DSM 17128]
gi|336067541|gb|EGN56175.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella
multisaccharivorax DSM 17128]
Length = 457
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY ++ EAD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYEPTDNEAEADAIFLNTCSVRENAENKIYQRL- 61
Query: 114 FYRSMKQIH--KKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
Q+H KK +GVLGCMAER+K L+E A ++V GPD+Y LP ++A
Sbjct: 62 -----DQLHADKKKNGLNTVLGVLGCMAERVKDDLVENHHA-NIVCGPDAYMGLPEMMAA 115
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
A++V LS ETY + P + + +V G SI
Sbjct: 116 AEQGLPAVDVKLSTTETYRSVLPTRIGGN-----HVSGFVSI 152
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 48/67 (71%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EVR L D+ + EV
Sbjct: 137 LPTRIGGNHVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILAEVRDLHDRGFKEVT 196
Query: 61 GCQMNVN 67
NVN
Sbjct: 197 LLGQNVN 203
>gi|282858916|ref|ZP_06268056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
JCVIHMP010]
gi|424899994|ref|ZP_18323536.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Prevotella bivia DSM 20514]
gi|282588298|gb|EFB93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia
JCVIHMP010]
gi|388592194|gb|EIM32433.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Prevotella bivia DSM 20514]
Length = 442
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY EAD I + TC+IRENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K + L +GVLGCMAER++ L+E A +LV GPDSY +LP ++A
Sbjct: 63 TLHA-----EKRKGRDLILGVLGCMAERVRDDLIENHYA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A ++ LS ETY +I P+ +
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRI 140
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L + + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILQEVQDLKGRGFREVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|373499570|ref|ZP_09589978.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
micans F0438]
gi|371957286|gb|EHO75053.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
micans F0438]
Length = 442
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDICENENEADAIFLNTCSIRENAENKIYNRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ ++LV GPDSY +LP ++A
Sbjct: 62 --DTLHAERKKGRE--LILGVLGCMAERVRDDLIQNHN-VNLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A+++ LS ETY D+ P+ +
Sbjct: 117 NGHNALDIELSTTETYRDVIPQRI 140
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR + SIL EV L +K + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVDSILREVADLQEKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|145521116|ref|XP_001446413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413891|emb|CAK79016.1| unnamed protein product [Paramecium tetraurelia]
Length = 504
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 13/142 (9%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + E +GCQMN ND+++V SIL S GYS N EAD+I + TC+IR NAE KV+ R+
Sbjct: 46 KFFIETYGCQMNANDSQIVQSILSSEGYSNTNDISEADIIFLNTCSIRANAEKKVFQRMS 105
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALT 172
+S ++ +G+LGCMAERLK+ L Q +++ GPDSYK LP LL +
Sbjct: 106 ELKSQNKV----------LGILGCMAERLKEQLF--VQGANIIVGPDSYKSLPTLLNSFQ 153
Query: 173 YSNQTAINVLLSLDETYADITP 194
+ I+ LSL ETY DI P
Sbjct: 154 LTRDKQIDTNLSLTETYDDILP 175
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
DS++ +VSIMRGC+NMC++C+VPFTRGRERSR +SIL+E++ L+ K EV NVN
Sbjct: 180 DSITTYVSIMRGCNNMCSFCVVPFTRGRERSRNPESILEEIQILTQKGIKEVTLLGQNVN 239
>gi|281421531|ref|ZP_06252530.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
18205]
gi|281404603|gb|EFB35283.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM
18205]
Length = 444
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 91/144 (63%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV S+++ +GY EAD I + TC+IRENAE K++ RL
Sbjct: 3 KLFIETYGCQMNVADSEVVASVMQMAGYEICEKEEEADAIFLNTCSIRENAENKIYHRL- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L GVLGCMAER+K L++ A +LV GPDSY +LP ++A
Sbjct: 62 --DTLHAEQKKGRKVIL--GVLGCMAERVKDDLIQNHYA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
AIN+ LS ETY DI P+ +
Sbjct: 117 MGTNAINIELSKTETYRDIVPQRI 140
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR +SIL EVR L + + EV
Sbjct: 139 RIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDAESILREVRDLQQRGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|313887037|ref|ZP_07820737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923563|gb|EFR34372.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas
asaccharolytica PR426713P-I]
Length = 450
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ + V + +V+ E +GCQMNV D+E++ + ++ +GY + EAD +L+ TC++R+N
Sbjct: 1 MTERVEQENKRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDN 60
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE ++ RL ++ P +GVLGCMAER++++L+ ++ +DLVAGPD+Y
Sbjct: 61 AEQRIIHRLDNLNG----QRRRSGHPQIVGVLGCMAERVRETLI-QDHGVDLVAGPDAYT 115
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITP 194
DLP L+A + + AI++ LS ETY+D+ P
Sbjct: 116 DLPHLIAAAEAGEPAISIELSKSETYSDVIP 146
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL +S FVSIMRGCDN CTYCIVP+TRGRERSR +SI+ EV+ ++ + Y EV
Sbjct: 147 VRLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRERSRDPESIVREVQRMAQEGYREVTLL 206
Query: 63 QMNVN 67
NVN
Sbjct: 207 GQNVN 211
>gi|317504443|ref|ZP_07962422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
15606]
gi|315664431|gb|EFV04119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM
15606]
Length = 444
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 93/147 (63%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC++RENAE K+++
Sbjct: 1 MDKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYN 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL ++ KK R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A
Sbjct: 61 RL---DTLHAEQKKGRQ--LILGVLGCMAERVKDDLIKNHHA-SLVCGPDSYLNLPTMIA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
A++ LS ETY D+ P+ +
Sbjct: 115 ECELGHAAVDTDLSTTETYRDVLPQRI 141
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EV+ L DK + EV
Sbjct: 140 RIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILAEVKDLHDKGFKEVTLLG 199
Query: 64 MNVN 67
NVN
Sbjct: 200 QNVN 203
>gi|260885970|ref|ZP_05736252.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
51259]
gi|260851116|gb|EEX70985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC
51259]
Length = 458
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
E +GCQMNV D+EVV S++K +GY + EAD + + TC++R+NAE ++ RL
Sbjct: 23 IETYGCQMNVADSEVVASVMKMAGYEPTENLDEADAVFLNTCSVRDNAEQRIIHRLDALH 82
Query: 117 SMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176
++++ ++ L IGVLGCMAER+K+ LL A DLVAGPD+Y LP L+A +
Sbjct: 83 ALRKHGRR-----LIIGVLGCMAERVKEGLLHDHHA-DLVAGPDAYLSLPDLIAQAEAGH 136
Query: 177 TAINVLLSLDETYADITPKAV 197
A+N+ LS ETY D+ P+ V
Sbjct: 137 KAMNIELSTSETYRDVVPERV 157
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EV L DK + EV NVN
Sbjct: 162 LSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILREVADLHDKHFKEVTLLGQNVN 219
>gi|397690621|ref|YP_006527875.1| RNA modification enzyme, MiaB family [Melioribacter roseus P3M]
gi|395812113|gb|AFN74862.1| RNA modification enzyme, MiaB family [Melioribacter roseus P3M]
Length = 441
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
+ VY E +GCQMN D+E+V ILK+ G+ + EA+VIL+ TC++R+NAE K++ RL
Sbjct: 4 NNVYIETYGCQMNFADSELVMGILKNKGFEVTRNIDEANVILLNTCSVRDNAEQKIFHRL 63
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ +K+ + + IG+LGCMAERL+K L+E+++ +D+V GPD Y+ LP +
Sbjct: 64 DHLKRIKRENPQ-----AVIGILGCMAERLRKRLIEEKKIVDVVVGPDEYRRLPEYIDHA 118
Query: 173 YSNQTAINVLLSLDETYADITP 194
+ + I V LS ETY DI P
Sbjct: 119 FGGEKGIGVKLSRTETYDDIIP 140
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
ED +SA++S+MRGCD CT+C+VPFTRGRERSR + SI++EV++LS++ + EV NV
Sbjct: 143 EDGISAWISVMRGCDKFCTFCVVPFTRGRERSRSLDSIVNEVKSLSERNFKEVTLLGQNV 202
Query: 67 N 67
N
Sbjct: 203 N 203
>gi|332299874|ref|YP_004441795.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Porphyromonas asaccharolytica DSM 20707]
gi|332176937|gb|AEE12627.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Porphyromonas asaccharolytica DSM 20707]
Length = 450
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
+ + V + +V+ E +GCQMNV D+E++ + ++ +GY + EAD +L+ TC++R+N
Sbjct: 1 MTERVEQENKRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDN 60
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE ++ RL ++ P +GVLGCMAER++++L+ ++ +DLVAGPD+Y
Sbjct: 61 AEQRIIHRLDNLNG----QRRRSGHPQIVGVLGCMAERVRETLI-QDHGVDLVAGPDAYT 115
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITP 194
DLP L+A + + AI++ LS ETY+D+ P
Sbjct: 116 DLPHLIAAAEAGEPAISIELSKSETYSDVIP 146
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL +S FVSIMRGCDN CTYCIVP+TRGRERSR +SI+ EV+ ++ + Y EV
Sbjct: 147 VRLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRERSRDPESIVREVQRMAQEGYREVTLL 206
Query: 63 QMNVN 67
NVN
Sbjct: 207 GQNVN 211
>gi|383810742|ref|ZP_09966230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
306 str. F0472]
gi|383356590|gb|EID34086.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon
306 str. F0472]
Length = 442
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 6/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY ++ EAD I + TC++RENAE K++ RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCDNEDEADAIFLNTCSVRENAENKIYHRLD 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++ +K L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 63 TLHAEQKKGRK-----LILGVLGCMAERVRDDLIQNHFA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ A+++ LS ETY D+ P+
Sbjct: 117 NGNNALDIELSTTETYRDVIPQ 138
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + VS FVSIMRGC+N C YCIVPFTRGRERSR + SIL EV+ L DK + EV
Sbjct: 139 RFGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVDSILKEVKDLHDKGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|260592003|ref|ZP_05857461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
F0319]
gi|260536287|gb|EEX18904.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis
F0319]
Length = 450
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 94/142 (66%), Gaps = 6/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY ++ EAD I + TC++RENAE K++ RL
Sbjct: 11 KLYIETYGCQMNVADSEVVASVMKMAGYDVCDNEDEADAIFLNTCSVRENAENKIYHRL- 69
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ KK R L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 70 --DTLHAEQKKGRK--LILGVLGCMAERVRDDLIQNHFA-NLVCGPDSYLNLPDMIAQCE 124
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ A+++ LS ETY D+ P+
Sbjct: 125 NGNNALDIELSTTETYRDVIPQ 146
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + VS FVSIMRGC+N C YCIVPFTRGRERSR + SIL EV+ L DK + EV
Sbjct: 147 RFGGNRVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVDSILKEVKDLHDKGFKEVTLLG 206
Query: 64 MNVN 67
NVN
Sbjct: 207 QNVN 210
>gi|315606981|ref|ZP_07881987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
33574]
gi|315251362|gb|EFU31345.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC
33574]
Length = 444
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 11/163 (6%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K++ E +GCQMNV D+EVV S++K +GY EAD I + TC++RENAE K++
Sbjct: 1 MNKKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + + KK R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A
Sbjct: 61 RLDTLHAER---KKGR--ELILGVLGCMAERVKDDLIDNHHA-SLVCGPDSYLNLPDMVA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
AI++ LS ETY D+ P+ + + +V G SI
Sbjct: 115 QCEMGNKAIDIELSKTETYRDVIPQRIGGN-----HVSGFVSI 152
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L D+ + EV
Sbjct: 140 RIGGNHVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVCDLRDRGFKEVTLLG 199
Query: 64 MNVN 67
NVN
Sbjct: 200 QNVN 203
>gi|288925880|ref|ZP_06419810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
gi|402307623|ref|ZP_10826645.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. MSX73]
gi|288337304|gb|EFC75660.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17]
gi|400378335|gb|EJP31193.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella sp. MSX73]
Length = 444
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 11/163 (6%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K++ E +GCQMNV D+EVV S++K +GY EAD I + TC++RENAE K++
Sbjct: 1 MNKKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + + KK R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A
Sbjct: 61 RLDTLHAER---KKGRE--LILGVLGCMAERVKDDLIDNHHA-SLVCGPDSYLNLPDMVA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI 213
AI++ LS ETY D+ P+ + + +V G SI
Sbjct: 115 QCEMGNKAIDIELSKTETYRDVIPQRIGGN-----HVSGFVSI 152
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L D+ + EV
Sbjct: 140 RIGGNHVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILKEVCDLRDRGFKEVTLLG 199
Query: 64 MNVN 67
NVN
Sbjct: 200 QNVN 203
>gi|307564743|ref|ZP_07627271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
21A-A]
gi|307346465|gb|EFN91774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS
21A-A]
Length = 442
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S++K +GY +AD I + TC+IRENAE K+++RL
Sbjct: 3 KLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEDDADAIFINTCSIRENAENKIYNRLE 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K + L +GVLGCMAER++ L++ A +LV GPDSY +LP ++A
Sbjct: 63 SLHA-----EKRKGRDLILGVLGCMAERVRDDLIDNHHA-NLVCGPDSYLNLPDMIAQCE 116
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ A ++ LS ETY +I P+ +
Sbjct: 117 NGNNACDIELSTTETYRNIIPQRI 140
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV L ++ + EV
Sbjct: 139 RIGGNKVSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILQEVNDLKERGFKEVTLLG 198
Query: 64 MNVN 67
NVN
Sbjct: 199 QNVN 202
>gi|442743204|ref|YP_007374508.1| RNA modification protein [Candidatus Uzinura diaspidicola str.
ASNER]
gi|442739272|gb|AGC66968.1| RNA modification protein [Candidatus Uzinura diaspidicola str.
ASNER]
Length = 470
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 98/148 (66%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN++D+E++ S+L G+ + +AD+IL+ TC+IRE AE + RL
Sbjct: 17 KLYIENYGCQMNLSDSEIISSLLAEEGFFTFSKIYDADLILLNTCSIREKAESNIRRRLI 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + K + + IG+LGCMAERLKK LE+E+ +DLV GPDSY+ LP L++
Sbjct: 77 EFQ-----YIKKKKPSIIIGLLGCMAERLKKRWLEEEKIVDLVVGPDSYRALPMLISRVE 131
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+++INVL S +E YAD+ P + +G
Sbjct: 132 DGKSSINVLFSKEENYADVNPIRLGDNG 159
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL ++ ++AFVSI RGCDNMC++C+VPFTRGRERSR SI+ E + L + Y EV
Sbjct: 153 IRLGDNGITAFVSITRGCDNMCSFCVVPFTRGRERSRDPASIIKECQKLWSQGYKEVNLL 212
Query: 63 QMNVN 67
NV+
Sbjct: 213 GQNVD 217
>gi|417779503|ref|ZP_12427288.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira weilii str.
2006001853]
gi|410780332|gb|EKR64926.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira weilii str.
2006001853]
Length = 449
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E+ + KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA
Sbjct: 5 ELEKKTGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHA 64
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+++RL+ +K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP
Sbjct: 65 KIYNRLQSLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLP 119
Query: 167 RLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
L+ S + +I++ LS ETY +I P+ V+
Sbjct: 120 ELIQRIRSGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLAEKGIRQVTLLGQNVN 211
>gi|299142064|ref|ZP_07035198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
gi|298576526|gb|EFI48398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735]
Length = 444
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++
Sbjct: 1 MNKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYN 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL ++ KK R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A
Sbjct: 61 RL---DTLHAEQKKGRQ--LILGVLGCMAERVKDDLIKNHHA-SLVCGPDSYLNLPTMIA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
++ LS ETY ++ P+ +
Sbjct: 115 ECELGHATVDTNLSTTETYRNVLPQRI 141
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EV+ L DK + EV
Sbjct: 140 RIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILAEVKDLHDKGFKEVTLLG 199
Query: 64 MNVN 67
NVN
Sbjct: 200 QNVN 203
>gi|281424718|ref|ZP_06255631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
gi|281401088|gb|EFB31919.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302]
Length = 444
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K+Y E +GCQMNV D+EVV S++K +GY + EAD I + TC+IRENAE K+++
Sbjct: 1 MNKKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYN 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL ++ KK R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A
Sbjct: 61 RL---DTLHAEQKKGRQ--LILGVLGCMAERVKDDLIKNHHA-SLVCGPDSYLNLPTMIA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
++ LS ETY ++ P+ +
Sbjct: 115 ECELGHATVDTNLSTTETYRNVLPQRI 141
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EV+ L DK + EV
Sbjct: 140 RIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILAEVKDLHDKGFKEVTLLG 199
Query: 64 MNVN 67
NVN
Sbjct: 200 QNVN 203
>gi|456864769|gb|EMF83156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira weilii serovar
Topaz str. LT2116]
Length = 449
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E+ + KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA
Sbjct: 5 ELEKKTGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHA 64
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+++RL+ +K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP
Sbjct: 65 KIYNRLQSLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLP 119
Query: 167 RLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
L+ S + +I++ LS ETY +I P+ V+
Sbjct: 120 ELIQRIRSGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLAEKGIRQVTLLGQNVN 211
>gi|359727231|ref|ZP_09265927.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
weilii str. 2006001855]
Length = 449
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E+ + KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA
Sbjct: 5 ELEKKTGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHA 64
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+++RL+ +K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP
Sbjct: 65 KIYNRLQSLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLP 119
Query: 167 RLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
L+ S + +I++ LS ETY +I P+ V+
Sbjct: 120 ELIQRIRSGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLAEKGIRQVTLLGQNVN 211
>gi|346224891|ref|ZP_08846033.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anaerophaga
thermohalophila DSM 12881]
Length = 461
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN D+EVV S+++ GY + +AD I + TC+IRENAE +V R++
Sbjct: 24 KIYIETYGCQMNFADSEVVASVMQMDGYETTSEYAQADAIFINTCSIRENAEQRVLGRIK 83
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K+ L +G++GCMAER+K L E+ D+VAGPD+Y DLP L+++
Sbjct: 84 ELKALKKKKPG-----LILGIIGCMAERVKDRLF--EEGADIVAGPDAYLDLPNLVSMAE 136
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
Q INV LS ETY D+ PK + G+ S +V
Sbjct: 137 QGQKTINVELSRTETYRDVIPKRLGP-GKISAFV 169
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL +SAFVSIMRGC+N CTYC+VP+TRGRERSR SI E+ L Y E+
Sbjct: 159 RLGPGKISAFVSIMRGCNNFCTYCVVPYTRGRERSRDPLSIKKEIAGLVKNGYKEITLLG 218
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVI 93
NVN S L S +N P D +
Sbjct: 219 QNVN------SFLYKEKNSTMNFPELLDFL 242
>gi|398342805|ref|ZP_10527508.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
inadai serovar Lyme str. 10]
Length = 464
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 8/163 (4%)
Query: 37 RSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVM 96
++R M + VRA KVY E +GCQMN D+ +V S+++ + Y V+ P E+DVI +
Sbjct: 12 KTRLMSVMEAVVRA--GKVYIETYGCQMNEYDSGIVTSLMQGAQYETVSDPEESDVIFLN 69
Query: 97 TCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV 156
TCAIRENA K++ RL+ +K+ R L IGVLGCMA+ L + L +E LDLV
Sbjct: 70 TCAIRENAHAKIYGRLQSLGYLKK-----RNPSLVIGVLGCMAQNLGEDLFHQELPLDLV 124
Query: 157 AGPDSYKDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
GPD+Y+ LP L++ + + ++++ LS ETY +I P+ V+
Sbjct: 125 VGPDNYRSLPDLISRIRTGEHSVSLTRLSKIETYDEIEPRVVN 167
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ V AFV+IMRGC+N CT+C+VP+TRGRERSR QSI+ E R L + ++ NVN
Sbjct: 167 NGVQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPQSIVRETRDLVAQGVKQLTLLGQNVN 226
>gi|301107328|ref|XP_002902746.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262097864|gb|EEY55916.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 594
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 94/140 (67%), Gaps = 12/140 (8%)
Query: 63 QMN--VNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ 120
+MN V T +V +IL SGY+ ADV+L+ TCA+R+NAE K+W+RL R +K
Sbjct: 70 EMNFPVAPTTIVRAILLESGYTSAPAADAADVVLLNTCAVRDNAEAKIWNRLESLRQVKA 129
Query: 121 I-----HKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY-S 174
HKK +T +GVLGCMAERLKK LL+ ++ +DLV GPD+Y+D+P LL + S
Sbjct: 130 KLLRLQHKKVQT----VGVLGCMAERLKKKLLDSDKMVDLVVGPDAYRDIPNLLRVVLGS 185
Query: 175 NQTAINVLLSLDETYADITP 194
+ A+NV LSLDETYADI P
Sbjct: 186 GEAAVNVQLSLDETYADIAP 205
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + S SAFVSIMRGC+NMC+YCIVPFTRGRERSR M SI+DEVRALSD+ EV
Sbjct: 206 VRADPHSPSAFVSIMRGCNNMCSYCIVPFTRGRERSRVMNSIVDEVRALSDQGVKEVVLL 265
Query: 63 QMNVN---DTEVVWSILKSSGY 81
NVN D + + K GY
Sbjct: 266 GQNVNSYHDKKSEGAAEKGRGY 287
>gi|421113652|ref|ZP_15574092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. JET]
gi|410800939|gb|EKS07117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. JET]
Length = 447
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++RL+
Sbjct: 12 KVYMETYGCQMNEYDSGIVSSLMKEAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 72 SLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIR 126
Query: 174 SNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ V+
Sbjct: 127 SGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>gi|418675772|ref|ZP_13237058.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|400323537|gb|EJO71385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
Length = 449
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S++K + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMKDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRGGENSISLTRLSKIETYDEIEPRVVN 152
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQVTLLGQNVN 211
>gi|418685220|ref|ZP_13246397.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|418739328|ref|ZP_13295716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|410740216|gb|EKQ84937.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410753580|gb|EKR10545.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 449
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S++K + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMKDAEYSASSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRGGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQVTLLGQNVN 211
>gi|421132655|ref|ZP_15592820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. 2008720114]
gi|410355860|gb|EKP03246.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. 2008720114]
Length = 449
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S++K + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMKDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRGGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQVTLLGQNVN 211
>gi|398338526|ref|ZP_10523229.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418696016|ref|ZP_13257026.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. H1]
gi|421088922|ref|ZP_15549739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. 200802841]
gi|409956196|gb|EKO15127.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. H1]
gi|410002320|gb|EKO52840.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. 200802841]
Length = 449
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S++K + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMKDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRGGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQVTLLGQNVN 211
>gi|421107681|ref|ZP_15568232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. H2]
gi|410007268|gb|EKO60979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira kirschneri
str. H2]
Length = 449
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S++K + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMKDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRGGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQVTLLGQNVN 211
>gi|421099179|ref|ZP_15559838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. 200901122]
gi|410797753|gb|EKR99853.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. 200901122]
Length = 449
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++R
Sbjct: 10 TGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNR 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 70 LQSLGYLKK-----RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQR 124
Query: 172 TYSNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ ++
Sbjct: 125 IRSGENSISLTRLSKIETYDEIEPRVIN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>gi|116327643|ref|YP_797363.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116330557|ref|YP_800275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
gi|122281687|sp|Q04UA3.1|MIAB_LEPBJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|122284560|sp|Q053R5.1|MIAB_LEPBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|116120387|gb|ABJ78430.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124246|gb|ABJ75517.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 449
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++R
Sbjct: 10 TGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNR 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 70 LQSLGYLKK-----RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQR 124
Query: 172 TYSNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ V+
Sbjct: 125 IRSGEHSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>gi|418735050|ref|ZP_13291462.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410749306|gb|EKR02198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 449
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++R
Sbjct: 10 TGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNR 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 70 LQSLGYLKK-----RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQR 124
Query: 172 TYSNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ V+
Sbjct: 125 IRSGEHSISLTRLSKIETYDEIEPRVVN 152
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQITLLGQNVN 211
>gi|418744000|ref|ZP_13300359.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. CBC379]
gi|410795395|gb|EKR93292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. CBC379]
Length = 447
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++RL+
Sbjct: 12 KVYMETYGCQMNEYDSGIVSSLMKEAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 72 SLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIR 126
Query: 174 SNQTAINVL-LSLDETYADITPKAVS 198
+ + +I++ LS ETY +I P+ V+
Sbjct: 127 NGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>gi|359685296|ref|ZP_09255297.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
santarosai str. 2000030832]
gi|410449721|ref|ZP_11303774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira sp. Fiocruz
LV3954]
gi|418753196|ref|ZP_13309449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. MOR084]
gi|422004550|ref|ZP_16351766.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
santarosai serovar Shermani str. LT 821]
gi|409966442|gb|EKO34286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. MOR084]
gi|410016478|gb|EKO78557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira sp. Fiocruz
LV3954]
gi|417256728|gb|EKT86143.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
santarosai serovar Shermani str. LT 821]
gi|456875775|gb|EMF90967.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. ST188]
Length = 447
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++RL+
Sbjct: 12 KVYMETYGCQMNEYDSGIVSSLMKEAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ + K L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 72 SLGYLKKRNPK-----LVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIR 126
Query: 174 SNQTAINVL-LSLDETYADITPKAVS 198
+ + +I++ LS ETY +I P+ V+
Sbjct: 127 NGENSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>gi|345881401|ref|ZP_08832921.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
oulorum F0390]
gi|343919640|gb|EGV30384.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Prevotella
oulorum F0390]
Length = 446
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K+Y E +GCQMNV D+EVV S++K +GY EAD I + TC++RENAE K++
Sbjct: 1 MEKKLYIETYGCQMNVADSEVVASVMKMAGYDLCEDENEADAIFLNTCSVRENAENKIFH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL + ++ +K L +GVLGCMAER+K L++ LV GPD+Y +LP ++A
Sbjct: 61 RLDTLHAEQKKGRK-----LILGVLGCMAERVKDDLIQNHHC-SLVCGPDAYLNLPEMIA 114
Query: 171 LTYSNQTAINVLLSLDETYADITPKAV 197
T ++ LS ETY D+ P+ +
Sbjct: 115 ECELGHTVMDTELSTTETYRDVLPQRI 141
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 35/202 (17%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + VS FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EV+ L+ K + EV
Sbjct: 140 RIGGNKVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVKDLAQKGFKEVTLLG 199
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ--- 120
NVN + +L + P+E + +R+ A+ R+RF S +
Sbjct: 200 QNVNS----YGLLPNG-----KRPKEGTSFAEL---LRKVAQSVPHMRVRFTTSNPEDMT 247
Query: 121 ---IHK--------KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG-----PDSYKD 164
+H KH FP + G + +L +E+ LD VA PD
Sbjct: 248 EDILHAVAEEPNLCKHIHFPAQSGSSKVL--KLMNRKYTREEYLDKVAAIKRIIPDC--G 303
Query: 165 LPRLLALTYSNQTAINVLLSLD 186
L + + Y N+T + L+LD
Sbjct: 304 LTTDIFVGYHNETEDDQQLTLD 325
>gi|294675532|ref|YP_003576148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
gi|294471893|gb|ADE81282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23]
Length = 470
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 7/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ +GY EAD + + TC++R+NAE K++ RL
Sbjct: 29 KLYIETYGCQMNVADSEVVASVMQMAGYETTETIDEADAVFLNTCSVRDNAEQKIYHRLE 88
Query: 114 FYRSMKQIHKKHRTFP----LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ ++ ++ ++ P + +GVLGCMAER ++ LL+ A DLVAGPD+Y LP L+
Sbjct: 89 ALDAERR--RRLKSNPEAPKMILGVLGCMAERAQRDLLDNHFA-DLVAGPDAYLSLPDLI 145
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAV 197
A A+N LS ETY D+ P+ +
Sbjct: 146 AQAELGHKAMNTELSTSETYKDVVPQRI 173
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ FVSIMRGC+N C YCIVP+TRGRERSR ++SIL EVR L DK + EV NVN
Sbjct: 179 IGGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILREVRDLRDKGFKEVTLLGQNVN 236
>gi|418728281|ref|ZP_13286856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 12758]
gi|410776945|gb|EKR56918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 12758]
Length = 449
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S+++ + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRKGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 211
>gi|24213805|ref|NP_711286.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
interrogans serovar Lai str. 56601]
gi|45658409|ref|YP_002495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|386073368|ref|YP_005987685.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
str. IPAV]
gi|417763426|ref|ZP_12411404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000624]
gi|417764936|ref|ZP_12412903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417769972|ref|ZP_12417886.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417776836|ref|ZP_12424669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000621]
gi|417785765|ref|ZP_12433467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. C10069]
gi|418667061|ref|ZP_13228476.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418671161|ref|ZP_13232515.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000623]
gi|418681122|ref|ZP_13242356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692949|ref|ZP_13254019.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. FPW2026]
gi|418700282|ref|ZP_13261224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418703252|ref|ZP_13264140.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418709794|ref|ZP_13270580.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418714226|ref|ZP_13274786.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 08452]
gi|418727711|ref|ZP_13286299.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 12621]
gi|421084635|ref|ZP_15545491.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. HAI1594]
gi|421103382|ref|ZP_15563982.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421119134|ref|ZP_15579459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. Brem 329]
gi|421127280|ref|ZP_15587504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421134131|ref|ZP_15594273.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|81406958|sp|Q72PA4.1|MIAB_LEPIC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81470597|sp|Q8F743.1|MIAB_LEPIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|24194637|gb|AAN48304.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
str. 56601]
gi|45601652|gb|AAS71132.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353457157|gb|AER01702.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai
str. IPAV]
gi|400327225|gb|EJO79480.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400353380|gb|EJP05556.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357284|gb|EJP13424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. FPW2026]
gi|409940632|gb|EKN86271.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000624]
gi|409948225|gb|EKN98215.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409951106|gb|EKO05623.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. C10069]
gi|409959069|gb|EKO22846.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 12621]
gi|410021869|gb|EKO88652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410348082|gb|EKO98920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. Brem 329]
gi|410367128|gb|EKP22516.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410432585|gb|EKP76940.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira santarosai
str. HAI1594]
gi|410435370|gb|EKP84502.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410573514|gb|EKQ36563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000621]
gi|410581830|gb|EKQ49637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. 2002000623]
gi|410757136|gb|EKR18751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410760183|gb|EKR26379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410767123|gb|EKR37802.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410770029|gb|EKR45256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410789169|gb|EKR82871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
str. UI 08452]
gi|455666195|gb|EMF31646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455793121|gb|EMF44835.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456822880|gb|EMF71350.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 449
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S+++ + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRKGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 211
>gi|421114972|ref|ZP_15575386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410013693|gb|EKO71770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
Length = 449
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S+++ + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRKGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPKSIVREVQDLVQKGIRQITLLGQNVN 211
>gi|398336022|ref|ZP_10520727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 449
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E+ + KVY E +GCQMN D+ +V S++K + YS P ++D+I + TCAIRENA
Sbjct: 5 ELEKKAGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPEDSDIIFLNTCAIRENAHA 64
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP
Sbjct: 65 KIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLP 119
Query: 167 RLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
L+ + +I + LS ETY +I P+ V+
Sbjct: 120 ELIQRIRGGENSIALTRLSKIETYDEIEPRVVN 152
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L+DK +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLADKGIRQVTLLGQNVN 211
>gi|359690307|ref|ZP_09260308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418758567|ref|ZP_13314749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384114469|gb|EIE00732.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira licerasiae
serovar Varillal str. VAR 010]
Length = 449
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 6/153 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
EV + KVY E +GCQMN D+ +V S+++ + + V+ P +DVI + TCAIRENA
Sbjct: 5 EVEKKAGKVYIETYGCQMNEYDSGIVSSLMQGAQFETVSDPELSDVIFLNTCAIRENAHA 64
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K++ RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP
Sbjct: 65 KIYGRLQSLGYLKK-----RNPDLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRTLP 119
Query: 167 RLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
L+ S++ +++ LS ETY +I P+ V+
Sbjct: 120 ELIQTIRSDKQPVSLTRLSKIETYDEIEPRVVN 152
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR SI+ E R L
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPHSIVRETRDL 195
>gi|384249320|gb|EIE22802.1| hypothetical protein COCSUDRAFT_29412 [Coccomyxa subellipsoidea
C-169]
Length = 514
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 89/136 (65%), Gaps = 7/136 (5%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN +DTE++ IL G+++ + P ADVIL+ TCAIRE AE K++ RL +++K+
Sbjct: 1 MNSSDTEILRGILAQHGFTRADDPAGADVILLNTCAIREKAEQKIFSRLGEIKALKKTRD 60
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA----- 178
R P+ +GV+GCMAERLK L E ++ +D+VAGPD+++ LP L+ L +
Sbjct: 61 SER-MPVCVGVIGCMAERLKDQLFE-QKVVDIVAGPDAFRSLPGLIHLFTQGRDGEDNDL 118
Query: 179 INVLLSLDETYADITP 194
INV LS +ETYAD+ P
Sbjct: 119 INVQLSTEETYADVRP 134
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 45/59 (76%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+VSA VSIMRGC+NMC++CIVPFTRGRERSRP SIL EV+ L ++ EV NVN
Sbjct: 140 AVSAAVSIMRGCNNMCSFCIVPFTRGRERSRPAASILAEVKQLHEEGCKEVLLLGQNVN 198
>gi|373459938|ref|ZP_09551705.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Caldithrix abyssi DSM 13497]
gi|371721602|gb|EHO43373.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Caldithrix abyssi DSM 13497]
Length = 434
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMN DTE++ +ILK Y P EA+V+ + TC++RENA KV R+
Sbjct: 3 RVYIETYGCQMNEYDTEIIKTILKRHHYHFTESPEEAEVVFLNTCSVRENAHQKVQQRI- 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LT 172
++KQ+ K + L +GVLGCMA+ L+ LL+++ +D+VAGPDSYK LP +L+ +
Sbjct: 62 --NTLKQLRKTKKG--LVLGVLGCMAQNLRDELLDEKVGVDVVAGPDSYKKLPEMLSHVI 117
Query: 173 YSNQTAINVLLSLDETYADITPK 195
+ + LS ETY+DI P+
Sbjct: 118 GEGKKESDFKLSEYETYSDIFPE 140
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V+A++++MRGCDN CT+C+VP+TRGRERSR ++L+EV+ L+ K + ++ NV
Sbjct: 142 EGGVNAWIAVMRGCDNFCTFCVVPYTRGRERSRDPFNVLEEVKTLASKGFKQITLLGQNV 201
Query: 67 N 67
N
Sbjct: 202 N 202
>gi|397611229|gb|EJK61235.1| hypothetical protein THAOC_18317 [Thalassiosira oceanica]
Length = 652
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 102/218 (46%), Gaps = 78/218 (35%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSIL---------KSSGYSKVNHPR-----------EADVI 93
K + + +GCQMNVNDT++V SIL + G S + P +ADV+
Sbjct: 45 KFHLKTYGCQMNVNDTDIVRSILLDNHKETSREHGGASGGDGPPPLRFEEVADEVQADVL 104
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLK---------------------- 131
L TCAIR+NAE KVW RL R+ R FPL
Sbjct: 105 LTNTCAIRDNAERKVWQRLHTLRAHD------RNFPLDGDDGTKGDGLMGRTKEARKQAQ 158
Query: 132 ----------IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL------------ 169
IGVLGCMAERLK+ + E+ A D+V GPD+Y+DLPRL+
Sbjct: 159 AGRRGGRKRIIGVLGCMAERLKEDMFEQGTA-DVVVGPDAYRDLPRLISVLAAPSLPNRD 217
Query: 170 -------ALTYSNQTAINVLLSLDETYADITPKAVSTD 200
A + + A+NV LSLDETYA ITP + D
Sbjct: 218 GDSGTQGAPSIPTERAVNVQLSLDETYASITPVRANPD 255
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF-EVFG 61
VR N D VSAFVS+MRGC+NMC+YC+VPFTRGRERSR ++S++ E R L D+ EV
Sbjct: 250 VRANPDDVSAFVSVMRGCNNMCSYCVVPFTRGRERSRDLESVVGETRRLLDEEGIREVIL 309
Query: 62 CQMNVN 67
NVN
Sbjct: 310 LGQNVN 315
>gi|323449468|gb|EGB05356.1| hypothetical protein AURANDRAFT_31065 [Aureococcus anophagefferens]
Length = 540
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ E GCQMNV+D+EVV S+L GY + ADV+L+ TCAIR+ AE KVW RLR
Sbjct: 40 FIETRGCQMNVSDSEVVRSLLLDGGYGEATSAAAADVVLLNTCAIRDKAEAKVWTRLRDL 99
Query: 116 RSMKQIHKK---HRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R K HR + VLGCMAER+++ L E A D+V GPD+Y++LPRLL
Sbjct: 100 RGRAPHGVKLAAHRRPRQTVAVLGCMAERVEEGLFENGLA-DVVVGPDAYRELPRLLGNV 158
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
S ++ LSL E Y ++ P R +V
Sbjct: 159 GSGPQ-MDTKLSLVEDYGEVFPTRADPTMRHGAFV 192
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
AFVS+ RGC+N C YCIVP+TRGRERSR + ++LDEV AL D E+ NVN
Sbjct: 190 AFVSVQRGCNNACAYCIVPYTRGRERSRAVTTVLDEVAALYDAGVREITLLGQNVN 245
>gi|297706883|ref|XP_002830254.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like,
partial [Pongo abelii]
Length = 229
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD
Sbjct: 8 REKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPD 66
Query: 161 SYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 67 AYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 107
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 99 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 158
Query: 61 GCQMNVN 67
NVN
Sbjct: 159 LLGQNVN 165
>gi|302037248|ref|YP_003797570.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
Nitrospira defluvii]
gi|300605312|emb|CBK41645.1| Isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus
Nitrospira defluvii]
Length = 452
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+ E FGCQMN D+E+V S+L+ +G+ ADV+L+ TCAIRENA KV+ L
Sbjct: 10 VHIETFGCQMNEYDSELVRSLLRKAGFEFTEDRERADVMLMNTCAIRENAHNKVYGHLAE 69
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL--ALT 172
+++K+ PL +GVLGCMA+ LK+ L EK+ +D++ GPD Y+ LP LL AL
Sbjct: 70 LKAVKE------QRPLVVGVLGCMAQNLKEELTEKQPLVDVLVGPDGYRQLPGLLTNALN 123
Query: 173 YSNQT----AINVLLSLDETYADITPK 195
Q + V LS ETY DI P+
Sbjct: 124 AEEQGLARRGMAVDLSEYETYDDILPE 150
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S +A+++IMRGCDN C++C+VP+TRGRERSR Q IL EV A + ++ NVN
Sbjct: 154 SSNAWIAIMRGCDNFCSFCVVPYTRGRERSRDPQGILREVEASVATGHTQITLLGQNVNS 213
Query: 69 --------TEVVWSILKSSGYSKVN----HPREADVILVMTCAIREN 103
++ ++ + G +V HP++ L+ A N
Sbjct: 214 YRYEDWDFARLILAVAEVPGVRRVRFTSPHPKDFPAALLDAVAGHPN 260
>gi|360044584|emb|CCD82132.1| putative radical sam proteins [Schistosoma mansoni]
Length = 215
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 28/152 (18%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN +D + S+L +GY+ V + D +L+MTCAIR++AE K+W R++ RS+ H+
Sbjct: 1 MNRSDANIAHSLLTKAGYTIVPSDEQCDTVLLMTCAIRDSAEVKIWRRIQHLRSL---HR 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQ---------------------ALDLVAGPDSY 162
K+ +KIGVLGCMA+RLK LL A D V GPDSY
Sbjct: 58 KY----VKIGVLGCMAKRLKDKLLMDNSCKTSKAGDLQSSSFGHNSFNVAADFVCGPDSY 113
Query: 163 KDLPRLLALTYSNQTAINVLLSLDETYADITP 194
+DLP+L+ +S +V LSL+ETYAD+TP
Sbjct: 114 RDLPKLIEDAHSGLKGASVALSLEETYADVTP 145
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
S +AF+S+MRGCDNMCTYCIVPF RGRERSRP+ SIL E ++L ++V+ +F
Sbjct: 161 SPTAFLSVMRGCDNMCTYCIVPFVRGRERSRPLDSILHEAQSLFNEVFSRMF 212
>gi|256069402|ref|XP_002571132.1| radical sam proteins [Schistosoma mansoni]
Length = 206
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 28/152 (18%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN +D + S+L +GY+ V + D +L+MTCAIR++AE K+W R++ RS+ H+
Sbjct: 1 MNRSDANIAHSLLTKAGYTIVPSDEQCDTVLLMTCAIRDSAEVKIWRRIQHLRSL---HR 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQ---------------------ALDLVAGPDSY 162
K+ +KIGVLGCMA+RLK LL A D V GPDSY
Sbjct: 58 KY----VKIGVLGCMAKRLKDKLLMDNSCKTSKAGDLQSSSFGHNSFNVAADFVCGPDSY 113
Query: 163 KDLPRLLALTYSNQTAINVLLSLDETYADITP 194
+DLP+L+ +S +V LSL+ETYAD+TP
Sbjct: 114 RDLPKLIEDAHSGLKGASVALSLEETYADVTP 145
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 38/43 (88%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
S +AF+S+MRGCDNMCTYCIVPF RGRERSRP+ SIL E ++L
Sbjct: 161 SPTAFLSVMRGCDNMCTYCIVPFVRGRERSRPLDSILHEAQSL 203
>gi|449017031|dbj|BAM80433.1| probable 2-methylthioadenine synthetase [Cyanidioschyzon merolae
strain 10D]
Length = 605
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 16/173 (9%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSIL--KSSGYSKVNHPR----E 89
E R + + L E KV+ E +GC MN +D+E+V SIL + + +N P E
Sbjct: 97 EALRALDADLAETPPAPYKVFIETYGCAMNTSDSEIVASILAARPDWFQLLNGPSASPDE 156
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI-GVLGCMAERLKKSLLE 148
ADV+L+ +CAIR+ E +V RL R+ ++ + + P +I G+LGCMAERLK LL+
Sbjct: 157 ADVVLINSCAIRDKPEVRVLQRLSMLRAAER--GRGQRAPRRILGLLGCMAERLKTRLLD 214
Query: 149 K---EQALDLVAGPDSYKDLPRLLA----LTYSNQTAINVLLSLDETYADITP 194
+ ++ +DLV GPDSY+DLP LL T + A +V LSL+ETYADI P
Sbjct: 215 EMPSKRLVDLVVGPDSYRDLPLLLQGLVRTTDLQRFAYHVQLSLEETYADIAP 267
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++A+VSIMRGC+N C +C+VP TRG ERSR SI +E+ +L ++ + EV NVN
Sbjct: 274 ITAYVSIMRGCNNHCAFCVVPQTRGPERSREPASIWNEIESLGNEGFKEVVLLGQNVN 331
>gi|183221201|ref|YP_001839197.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911292|ref|YP_001962847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|229890556|sp|B0S9E2.1|MIAB_LEPBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890557|sp|B0SS31.1|MIAB_LEPBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|167775968|gb|ABZ94269.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779623|gb|ABZ97921.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 458
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 41 MQSILDEVRALSD-----KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
M L E + L+ KVY E +GCQMN D+ +V + + Y N E+D+I +
Sbjct: 1 MNPTLTESQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFL 60
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TCA+RENA K++ RL +S+ + KK+ L IGVLGCMA+ L + L +E LDL
Sbjct: 61 NTCAVRENAHAKIYGRL---QSLGYLKKKNPN--LVIGVLGCMAQNLGEDLFHQELPLDL 115
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ GPD+Y+ LP L+ + + + + LS ETY ++ PK V+
Sbjct: 116 IVGPDNYRTLPELIQNIRNGEKDVQLTRLSRSETYDELEPKVVN 159
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L + +V NVN
Sbjct: 159 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVN 218
Query: 68 D--------TEVVWSILKSSGYSKVN----HPREADVILVMTCAIRENAEGKVWDRLRFY 115
+V SILK + +V HP++ L+ A +
Sbjct: 219 SYSYESYDFCALVESILKETTIERVRFTSPHPKDFPDHLISLMAKED------------- 265
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV 156
R QIH PL+ G + + +K+S KE+ LDLV
Sbjct: 266 RFSSQIH-----MPLQAGSSKVLRD-MKRSYT-KEEYLDLV 299
>gi|373461693|ref|ZP_09553431.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella maculosa OT
289]
gi|371951585|gb|EHO69430.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella maculosa OT
289]
Length = 430
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MNV D+EVV S++K +GY H EAD I + TC++RENAE K+++RL ++ K
Sbjct: 1 MNVADSEVVASVMKMAGYDVCEHEEEADAIFLNTCSVRENAENKIYNRL---DTLHAEQK 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLL 183
K R L +GVLGCMAER+K L++ A LV GPDSY +LP ++A +++ L
Sbjct: 58 KGRR--LILGVLGCMAERVKDDLVKNHHA-SLVCGPDSYLNLPSMIAECELGHASVDTEL 114
Query: 184 SLDETYADITPKAVSTDGRRSIYV 207
S ETY D+ P+ + GR S +V
Sbjct: 115 STTETYRDVLPQRIG--GRVSGFV 136
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 44/58 (75%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VS FVSIMRGC+N C YCIVPFTRGRERSR ++SIL EV+ L DK + EV NVN
Sbjct: 132 VSGFVSIMRGCNNFCHYCIVPFTRGRERSRDVESILAEVKDLHDKGFKEVTLLGQNVN 189
>gi|293977904|ref|YP_003543334.1| tRNA-i(6)A37 thiotransferase protein MiaB [Candidatus Sulcia
muelleri DMIN]
gi|292667835|gb|ADE35470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
muelleri DMIN]
Length = 455
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 95/145 (65%), Gaps = 10/145 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y E +GCQMN++D+E+V SIL + G+ K + +EA++IL+ TC+IR+ +E K+ R+
Sbjct: 5 KFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRI- 63
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K I KK+ + IG+LGCMA + K +++++ ++LV GPDSY+++P L+ +
Sbjct: 64 --NQIKFIIKKNN--DILIGILGCMASKFKN--IKEKKLINLVVGPDSYREIPNLINNFF 117
Query: 174 SNQ---TAINVLLSLDETYADITPK 195
+ +I+ S ETYADI PK
Sbjct: 118 KKKGEYISISTSFSKTETYADIIPK 142
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E ++AFV+IMRGCDNMCT+C+VPFTRGRE+SR SI+ E + L K Y E+ NV
Sbjct: 145 EKKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKECKFLFKKGYKEIILLGQNV 204
>gi|256370749|ref|YP_003108574.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
SMDSEM]
gi|256009541|gb|ACU52901.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri
SMDSEM]
Length = 458
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 6/145 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K Y E +GCQMN++D+E+V SIL + G+ + + + A++IL+ TC+IRE +E K+ R
Sbjct: 3 TKKYYIENYGCQMNISDSEIVCSILDNEGFIQTDLIQNANIILINTCSIREKSENKILLR 62
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-A 170
+ + +K K L IG+LGCMAE KK + + ++L+ GPDSY++LP L+
Sbjct: 63 INQIKYLKNYKKN-----LIIGILGCMAEIFKKKFFKINKIVNLILGPDSYRELPFLIKK 117
Query: 171 LTYSNQTAINVLLSLDETYADITPK 195
+ N IN S +ETY+DI PK
Sbjct: 118 ILNQNGKYINTYFSNNETYSDILPK 142
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
++ ++AFV+IMRGCDNMCT+C+VPFTRGRE+SR SIL E L K + E+ NV
Sbjct: 145 KEKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPISILKECEFLFQKGFKEIILLGQNV 204
Query: 67 NDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
+ LK + ++K + + + I+ + A+ + R+RF+ S
Sbjct: 205 DSYFWYGGGLKKN-FNKFSFSLKNNTIINFPKLLELVAKTVPFMRIRFWTS 254
>gi|161833793|ref|YP_001597989.1| RNA modification protein [Candidatus Sulcia muelleri GWSS]
gi|229891010|sp|A8Z642.1|MIAB_SULMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152206283|gb|ABS30593.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri
GWSS]
Length = 453
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K Y E +GCQMN++D+E+V SIL + G+ K + +EA++IL+ TC+IR+ +E K+
Sbjct: 2 IKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILL 61
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
R+ +K I KK+ + IG+LGCMA + K +++++ ++LV GPDSY+++P L+
Sbjct: 62 RI---NQIKFIIKKNN--DILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLIN 114
Query: 171 LTYSNQ-TAINVLLSLDETYADITPK 195
+ + I+ S ETYADI PK
Sbjct: 115 NFFKKKGEYISTSFSKTETYADIIPK 140
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E ++AFV+IMRGCDNMCT+C+VPFTRGRE+SR SI+ E + L K Y E+ NV
Sbjct: 143 EKKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKECKFLFKKGYKEIILLGQNV 202
>gi|408793922|ref|ZP_11205527.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461157|gb|EKJ84887.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 457
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMN DT +V + + Y ++D+I + TCA+RENA K++ RL
Sbjct: 18 KVYVETYGCQMNEYDTGIVKELFRKEKYETTESVEDSDIIFLNTCAVRENAHAKIYGRL- 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+S+ + KK+ L IGVLGCMA+ L + L +E LDL+ GPD+Y+ LP L+
Sbjct: 77 --QSLGYLKKKNPN--LVIGVLGCMAQNLGEDLFHQELPLDLIVGPDNYRTLPELIQKIR 132
Query: 174 SNQTAINVL-LSLDETYADITPKAVS 198
+ + + LS ETY ++ PK V+
Sbjct: 133 GGERDVQLTRLSRTETYDELEPKVVN 158
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 32/166 (19%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR SI+ E++ L ++ NVN
Sbjct: 158 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPGSIITEIQQLEAMGVKQITLLGQNVN 217
Query: 68 D--------TEVVWSILKSSGYSKVN----HPREADVILVMTCAIRENAEGKVWDRLRFY 115
+V IL + +V HP++ L+ A E
Sbjct: 218 SYSFESTDFCSLVEKILAETTVERVRFTSPHPKDFPDHLISLMAKEE------------- 264
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161
R QIH PL+ G + + +K+S KE+ LDLVA S
Sbjct: 265 RFSSQIH-----MPLQAGSSKVLRD-MKRSYT-KEEYLDLVASIQS 303
>gi|149917237|ref|ZP_01905736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
SIR-1]
gi|149821844|gb|EDM81238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica
SIR-1]
Length = 486
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ +VY E FGCQMN DT +V L+ G+ +V P EAD++LV TCA+RE AE +V+
Sbjct: 35 APRVYMETFGCQMNEADTALVLGRLRQDGWVRVTSPAEADLVLVNTCAVREKAEDRVYG- 93
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
R+ + + ++R L IG+ GCMAE L+ L + + LVAGPDSY+++ L
Sbjct: 94 ----RTTQLLDHRNRNPDLVIGITGCMAEHLRDKLETRAPHIQLVAGPDSYRNIAALARK 149
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ + A++V L E Y + P
Sbjct: 150 AITGERAVDVHLDKAEVYEGLDP 172
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+D VS +V+I RGCD CT+C+VPFTRGRER P + +L + R L++ Y E+ V
Sbjct: 189 DDGVSGYVTIQRGCDKFCTFCVVPFTRGRERGVPPREVLRQARRLAEAGYRELTLLGQTV 248
Query: 67 N 67
N
Sbjct: 249 N 249
>gi|224537219|ref|ZP_03677758.1| hypothetical protein BACCELL_02096, partial [Bacteroides
cellulosilyticus DSM 14838]
gi|224521175|gb|EEF90280.1| hypothetical protein BACCELL_02096 [Bacteroides cellulosilyticus
DSM 14838]
Length = 122
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS + EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
F+ S+K KK R L +GVLGCMAER+K L+ +DLV GPD+Y
Sbjct: 79 FFYSLK---KKKRN--LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAY 121
>gi|307106392|gb|EFN54638.1| hypothetical protein CHLNCDRAFT_135184 [Chlorella variabilis]
Length = 635
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 85/174 (48%), Gaps = 52/174 (29%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P + L + + + E +GCQMNVND+EVV +I
Sbjct: 91 PSPAALPDAASPPRTAFVETYGCQMNVNDSEVVLAI------------------------ 126
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
W RL + +S+K+ R P +GVLGCMAERLK+ LLE+E+ +D+VAGP
Sbjct: 127 ---------WQRLGYLKSLKRRPGAERRPPPVVGVLGCMAERLKERLLEREKLVDIVAGP 177
Query: 160 DSYKDLPRLLALTY-------------------SNQTAINVLLSLDETYADITP 194
D+Y+DLPRL+ + A+NV LS DETYADITP
Sbjct: 178 DAYRDLPRLIDIVQGGAGGPGGVLGSGGLPRPGGRAAAMNVQLSADETYADITP 231
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D++SAFVSIMRGC+NMC +CIVP+TRGRERSRP+QSI VR LS++ EV NVN
Sbjct: 236 DALSAFVSIMRGCNNMCAFCIVPYTRGRERSRPLQSI---VRMLSEQGVREVTLLGQNVN 292
>gi|226226860|ref|YP_002760966.1| hypothetical protein GAU_1454 [Gemmatimonas aurantiaca T-27]
gi|226090051|dbj|BAH38496.1| hypothetical protein GAU_1454 [Gemmatimonas aurantiaca T-27]
Length = 451
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E +GCQMNV D+E+++ L + GY V+ P ADVILV TCAIRENAE +V RL
Sbjct: 7 VYIETYGCQMNVADSELMYGKLVAHGYEPVDAPDGADVILVNTCAIRENAETRVIGRLGE 66
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R + K T +GV GCMA+RL +LE+ + + LV GPD Y+ LP LL
Sbjct: 67 LRR----YMKPDTI---VGVTGCMAQRLGPRVLEQARHVSLVVGPDGYRALPALLDGARR 119
Query: 175 NQTAINVLLSLDETYADITPK 195
+ L+E Y D+ +
Sbjct: 120 GEKFTATDFDLEEHYEDVVAR 140
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPM 41
+ V A++ + RGCD CTYCIVPFTRG ERSR +
Sbjct: 143 EGVKAWIPVQRGCDYRCTYCIVPFTRGPERSRKL 176
>gi|218961210|ref|YP_001740985.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
acidaminovorans]
gi|167729867|emb|CAO80779.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 427
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 87/143 (60%), Gaps = 11/143 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y E +GCQMNV D+E++ SIL +G+ +V EAD++L TC++R +AE +V R++
Sbjct: 2 KFYIETYGCQMNVADSELIASILTKAGHQEVTQISEADLLLFNTCSVRGHAEERVLGRIQ 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ H+K LKIGV+GCMA+RL + + +++ +D V G D Y+ LP +L
Sbjct: 62 -----SENHRKKENPNLKIGVVGCMAQRLGEEINKEKLTVDFVIGVDQYQHLPDIL---- 112
Query: 174 SNQTAINVLLSLDET--YADITP 194
+ +T +L LDET Y I P
Sbjct: 113 NEETEKTILTDLDETQLYKGIQP 135
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+++IMRGC+N C+YCIVP+ RGRERSR Q I++E + ++ ++ NVN
Sbjct: 143 AYITIMRGCNNFCSYCIVPYVRGRERSRSWQDIIEETISAGNQGKKDITLLGQNVN 198
>gi|145219118|ref|YP_001129827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
phaeovibrioides DSM 265]
gi|229890605|sp|A4SCW6.1|MIAB_PROVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145205282|gb|ABP36325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
phaeovibrioides DSM 265]
Length = 448
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y FGCQMN D+ ++ +IL G+ +AD++++ TCA+RENA ++ +L+F
Sbjct: 10 YIHTFGCQMNQADSAIITAILMDGGFRVAGSQEDADIVILNTCAVRENAVERITHQLQFL 69
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R K+ K L +GV GC+ + LK+ +LE +D +AGPD+Y++LP L+
Sbjct: 70 RGAKRRKKS-----LLVGVAGCVPQHLKREMLEMFPVIDFLAGPDTYRNLPALIGDAEEG 124
Query: 176 QTAINVLLSLDETYADITP 194
+ + ++ETYA I P
Sbjct: 125 KRPAALEFRIEETYAGIDP 143
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L E V AFV + RGC+NMC +C+VPFTRGRERS+P +++DEVR + +K Y E+
Sbjct: 144 LREVGVGAFVPVTRGCNNMCAFCVVPFTRGRERSQPFSAVMDEVRRVVEKGYGEITLLGQ 203
Query: 65 NVN 67
NVN
Sbjct: 204 NVN 206
>gi|407786465|ref|ZP_11133610.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Celeribacter
baekdonensis B30]
gi|407201186|gb|EKE71187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Celeribacter
baekdonensis B30]
Length = 446
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 7/154 (4%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
+ + +A + K+Y + +GCQMNV D+E + L SGY +V+ P EAD+IL+ TC IRE A
Sbjct: 1 MSDTKANTKKLYIKTYGCQMNVYDSERMAESLGGSGYVEVSSPEEADMILLNTCHIREKA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
KV+ L Y+ +K + LKIGV GC+A+ ++ ++ +DLV GP SY
Sbjct: 61 AEKVYSELGRYKDLKIANPD-----LKIGVAGCVAQAEGAEIMRRQPMVDLVVGPQSYHR 115
Query: 165 LPRLLALTYSNQTAINVLLSLDETYADIT--PKA 196
LP + A + QTA++ ++ + + PKA
Sbjct: 116 LPEMEAKAGNGQTALDTDFPEEDKFEHLKARPKA 149
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP + ++ E R L ++ E+ NVN
Sbjct: 154 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPAERVMSEARDLVERGVREITLLGQNVN 210
>gi|412988361|emb|CCO17697.1| CDK5 regulatory subunit-associated protein 1 [Bathycoccus prasinos]
Length = 628
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 78/134 (58%), Gaps = 22/134 (16%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE-------ADVILVMTCAIRENAEGK 107
Y E +GCQMN D+EV+ ++L S GY + + +VILV TCAIR+ AE +
Sbjct: 71 AYIETYGCQMNAADSEVIAAVLTSHGYEIIESKEKMISMTSPPEVILVNTCAIRDKAEER 130
Query: 108 VWDRLRFYRS--------MKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQA----LDL 155
V RLR +RS Q KK + IGVLGCM ER+K LL+K+ D+
Sbjct: 131 VKTRLRQFRSDTTKKSSFSTQQKKKKKAV---IGVLGCMGERIKGDLLKKDSKGVRLADI 187
Query: 156 VAGPDSYKDLPRLL 169
VAGPDSY+DLPRL+
Sbjct: 188 VAGPDSYRDLPRLI 201
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVR 49
R+ + S SAFV+I RGCDNMC +CIVPFTRGRERSR SIL+E +
Sbjct: 271 RVEDMSTSAFVTIQRGCDNMCAFCIVPFTRGRERSRDSASILEEAK 316
>gi|418721784|ref|ZP_13280958.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. UI 09149]
gi|421095826|ref|ZP_15556534.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. 200801926]
gi|410361241|gb|EKP12286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. 200801926]
gi|410741828|gb|EKQ90581.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira borgpetersenii
str. UI 09149]
Length = 428
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+ +V S++K + YS P +D+I + TCAIRENA K+++RL+ +K+
Sbjct: 1 MNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK--- 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL- 182
R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+ S + +I++
Sbjct: 58 --RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRSGEHSISLTR 115
Query: 183 LSLDETYADITPKAVS 198
LS ETY +I P+ V+
Sbjct: 116 LSKIETYDEIEPRVVN 131
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K ++ NVN
Sbjct: 131 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQITLLGQNVN 190
>gi|392404344|ref|YP_006440956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turneriella parva DSM
21527]
gi|390612298|gb|AFM13450.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turneriella parva DSM
21527]
Length = 473
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 8/146 (5%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+A + + Y E +GCQMN D+ + IL+S+ ++ P EAD+IL+ TCAIRENA KV
Sbjct: 29 KAPARQFYIETYGCQMNEYDSLLAGKILESNA-TQTASPAEADIILLNTCAIRENAHQKV 87
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
++RL R + + HK K+G+LGCMA+ L++ LL + +D + GPD+ ++L +L
Sbjct: 88 YNRL---RELSRFHKAG----AKVGILGCMAQNLREDLLYENLPVDFIMGPDALRNLAQL 140
Query: 169 LALTYSNQTAINVLLSLDETYADITP 194
+ ++ + LS ETY DI P
Sbjct: 141 VDSPTADTGRSFLNLSRIETYDDIVP 166
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R + ++A V+I RGCDN C +C+VP+TRGRERSRP+ SI+ EV+AL++ V
Sbjct: 172 MRYRDSKITASVTIQRGCDNFCAFCVVPYTRGRERSRPIDSIVAEVQALAESGVKTVILL 231
Query: 63 QMNVND--------TEVVWSILKSSGYSKV----NHPREADVILV 95
NVN +++ ++L + +++ HP++ V L+
Sbjct: 232 GQNVNSYHHEKARFIDLIEALLARTTIARIYFSSPHPKDFPVELI 276
>gi|74203559|dbj|BAE23052.1| unnamed protein product [Mus musculus]
Length = 190
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 92 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 151
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG 136
+W+RL + +K + R PL+IG+LG
Sbjct: 152 QTIWNRLHQLKVLKTKRPRSR-VPLRIGILG 181
>gi|410940489|ref|ZP_11372295.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira noguchii str.
2006001870]
gi|410784371|gb|EKR73356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira noguchii str.
2006001870]
Length = 428
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+ +V S++K + YS + P +D+I + TCAIRENA K+++RL+ +K+
Sbjct: 1 MNEYDSGIVSSLMKDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK--- 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL- 182
R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+ + +I++
Sbjct: 58 --RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRGGENSISLTR 115
Query: 183 LSLDETYADITPKAVS 198
LS ETY +I P+ V+
Sbjct: 116 LSKIETYDEIEPRVVN 131
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 131 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 190
>gi|189501144|ref|YP_001960614.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
phaeobacteroides BS1]
gi|229890477|sp|B3ENP4.1|MIAB_CHLPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|189496585|gb|ACE05133.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides
BS1]
Length = 447
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 41 MQSILD-EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
M SI+ V ++ KVY FGCQMN DTE++ ++L+ GY AD++++ TCA
Sbjct: 1 MNSIIKGNVLQMTKKVYIRTFGCQMNQADTEIITALLQDEGYVMTGSEERADLVILNTCA 60
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAG 158
+RENA K+ ++ + K R+ P L +GV+GC+ + ++ + +D +AG
Sbjct: 61 VRENAVEKIL------HTLDHMKGKRRSRPGLLVGVIGCVPQYYREKMFGMADGIDFLAG 114
Query: 159 PDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
PD+Y+ LP ++A + S DETY I P
Sbjct: 115 PDTYRQLPAMIANAGQGIRGADFGFSSDETYCGIEP 150
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
++SAF+ +MRGC+N C +C+VPFTRG+ERSRP +S+L++V L+ Y E+ NVN
Sbjct: 155 TISAFIPVMRGCNNRCAFCVVPFTRGKERSRPFRSVLEDVGRLAASGYKEITLLGQNVNS 214
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
TE++ + ++ ++ +HP++ LV A R N
Sbjct: 215 YSDDEAACDFTELLDRVAVAAEGVRIRFTTSHPKDISESLVRVIAARNN 263
>gi|149914119|ref|ZP_01902650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
gi|149811638|gb|EDM71471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b]
Length = 446
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y + +GCQMNV D+E + + S+GY + + P +AD+IL+ TC IRE A KV+
Sbjct: 4 AKKLYIKTYGCQMNVYDSERMAEAMGSAGYVETDTPDDADMILLNTCHIREKAAEKVYSE 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L +R +K LKIGV GC+A+ ++ ++ +DLV GP SY LP+L A
Sbjct: 64 LGRFRPLKDARPD-----LKIGVAGCVAQAEGDEIMRRQPLVDLVVGPQSYHRLPQLEAQ 118
Query: 172 TYSNQTAINVLLSLDETYADIT---PKA 196
T + A++ LD+ + + PKA
Sbjct: 119 TRTGARALDTDFPLDDKFEALKTRGPKA 146
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP ILDE R L D+ E+ NVN
Sbjct: 151 TAFLTVQEGCDKFCAFCVVPYTRGAEASRPAARILDEARELVDRGVREITLLGQNVN 207
>gi|374583918|ref|ZP_09657010.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptonema illini DSM
21528]
gi|373872779|gb|EHQ04773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptonema illini DSM
21528]
Length = 473
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
L ++ E +GCQMN D+ +V S+ K GYS V EA VIL+ TCA+RE A +V+
Sbjct: 25 LDRNIFVETYGCQMNEYDSGIVRSLFKDRGYSAVRSEEEAGVILLNTCAVREKAHERVYG 84
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL+ +K+ R L IG+LGCMA+ L + L +DL+ GPD+Y++LP L+
Sbjct: 85 RLQSLSYLKK-----RNPRLVIGILGCMAQNLGEDLFAMGLPVDLILGPDNYRNLPELID 139
Query: 171 LTYSNQTAINVL--LSLDETYADITPKAVS 198
L +S ETY ++ P+ VS
Sbjct: 140 RMRDEPGRSYQLTRISSTETYEELEPEVVS 169
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDK 54
AFV+IMRGC+N CT+C+VP+TRGRERSR SI+ EV+ L D+
Sbjct: 173 AFVTIMRGCNNFCTFCVVPYTRGRERSREPGSIVREVQNLIDR 215
>gi|456971134|gb|EMG11805.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 428
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+ +V S+++ + YS + P +D+I + TCAIRENA K+++RL+ +K+
Sbjct: 1 MNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK--- 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL- 182
R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+ + +I++
Sbjct: 58 --RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRKGENSISLTR 115
Query: 183 LSLDETYADITPKAVS 198
LS ETY +I P+ V+
Sbjct: 116 LSKIETYDEIEPRVVN 131
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 131 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 190
>gi|456985651|gb|EMG21406.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 428
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+ +V S+++ + YS + P +D+I + TCAIRENA K+++RL+ +K+
Sbjct: 1 MNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK--- 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL- 182
R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+ + +I++
Sbjct: 58 --RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRKGENSISLTR 115
Query: 183 LSLDETYADITPKAVS 198
LS ETY +I P+ V+
Sbjct: 116 LSKIETYDEIEPRVVN 131
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 131 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPKSIVREVQDLVQKGIRQITLLGQNVN 190
>gi|262197995|ref|YP_003269204.1| MiaB family RNA modification protein [Haliangium ochraceum DSM
14365]
gi|262081342|gb|ACY17311.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM
14365]
Length = 521
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 7/118 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMNV D++++ IL +GY + ADVIL+ TCA+RE AE KV R R
Sbjct: 45 RVYLETYGCQMNVADSDMLTGILLDAGYRRAASADAADVILINTCAVRERAEDKVLARAR 104
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
Q+ R P + +G+ GCMAE LK SLLE+ +D+VAGPDSY+ + LLA
Sbjct: 105 ------QLSALKRQRPDMVLGIAGCMAEHLKDSLLEQAPYVDIVAGPDSYRRMGELLA 156
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L D +S FV+I RGCD CT+C+VPFTRGRER + IL +VRA + Y EV
Sbjct: 205 LGGDGISGFVTIQRGCDKFCTFCVVPFTRGRERGSAPREILRQVRAYVEAGYREVVLLGQ 264
Query: 65 NVN 67
VN
Sbjct: 265 TVN 267
>gi|318087552|gb|ADV40366.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a
[Latrodectus hesperus]
Length = 174
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVY E +GCQMNVNDTE++++IL GY + DVIL+MTCAIRE AE K+W+R
Sbjct: 86 SKKVYIETYGCQMNVNDTEIIYAILSKDGYEISKEINDTDVILIMTCAIREGAEQKIWNR 145
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLK 143
L+ +S+K K+ PLKIG+LGCMAERLK
Sbjct: 146 LKHLKSLKLKRKRQ---PLKIGILGCMAERLK 174
>gi|89053188|ref|YP_508639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Jannaschia sp.
CCS1]
gi|122999629|sp|Q28UJ8.1|MIAB_JANSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|88862737|gb|ABD53614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Jannaschia sp. CCS1]
Length = 462
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E ++ K++ + +GCQMNV D+E + L GY +VN P AD+IL+ TC IRE A
Sbjct: 22 EAPQMTKKLFVKTYGCQMNVYDSERMAEALGGEGYEQVNTPEGADMILLNTCHIREKAAE 81
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K++ L R ++ + LKIGV GC+A+ + ++ ++ +DLV GP +Y LP
Sbjct: 82 KMYSELGRLRPLRDANPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQTYHRLP 136
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+++ + + A++ ++ + ++ PKA +T G
Sbjct: 137 KMMEAVNAGEKALDTDFPEEDKFLNL-PKARATRG 170
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SR + ++ E R L D+ E+ NVN
Sbjct: 172 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRSAERLMAEARDLVDRGVREITLLGQNVN 228
>gi|418750263|ref|ZP_13306549.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira licerasiae
str. MMD4847]
gi|404272866|gb|EJZ40186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptospira licerasiae
str. MMD4847]
Length = 428
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+ +V S+++ + + V+ P +DVI + TCAIRENA K++ RL+ +K+
Sbjct: 1 MNEYDSGIVSSLMQGAQFETVSDPELSDVIFLNTCAIRENAHAKIYGRLQSLGYLKK--- 57
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVL- 182
R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+ S++ +++
Sbjct: 58 --RNPDLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRTLPELIQTIRSDKQPVSLTR 115
Query: 183 LSLDETYADITPKAVS 198
LS ETY +I P+ V+
Sbjct: 116 LSKIETYDEIEPRVVN 131
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR SI+ E R L
Sbjct: 131 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPHSIVRETRDL 174
>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
olearia TBF 19.5.1]
gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
Length = 440
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 7/142 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+ F FGCQMNVNDTE + ILKS+GY V++ EADV++V TCA+RE AE K++ +L
Sbjct: 2 KIAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
RS+K KK+R L IGV GC+AE+ K++LL++E+ ++ V G S + L
Sbjct: 62 RLRSLK---KKNRN--LIIGVSGCVAEKEKEALLKREE-VNFVFGTRSISRVNEFLERAI 115
Query: 174 SNQTAINVLLSLDETYADITPK 195
+ + + +DE + TP+
Sbjct: 116 KGERFVELSDFIDEINSS-TPR 136
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
RL A+V+I+ GC+ C+YCIVP+TRGRE+SR M+ IL+EV+ L+ K Y EV
Sbjct: 136 RLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKRLASKGYREVTYLG 195
Query: 64 MNVN 67
NV+
Sbjct: 196 QNVD 199
>gi|335429548|ref|ZP_08556446.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haloplasma
contractile SSD-17B]
gi|334889558|gb|EGM27843.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haloplasma
contractile SSD-17B]
Length = 482
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 10/168 (5%)
Query: 33 RGRERSRPMQSILDEVR---ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
RG+ER + + L E K + FGCQMNV+DTEV+ IL++ G++ + E
Sbjct: 21 RGKERVKVINFDLPETMEKIGKGKKFLIDTFGCQMNVHDTEVMSGILQNMGFNHTKNEEE 80
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLL 147
AD+I++ TCAIRENAE KV+ ++ + H K L +GV GCM+ E++ +LL
Sbjct: 81 ADIIILNTCAIRENAENKVFGKIGALK-----HLKRENPDLILGVCGCMSQEEKIVNTLL 135
Query: 148 EKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
EK Q +DL+ G + LP L Y N+ I + S + + PK
Sbjct: 136 EKYQHVDLIFGTHNIHRLPEYLRDAYLNKERIVEVWSQEGDIVEHMPK 183
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E SV A+V+I GCD CTYCIVPFTRG+ERSR + I++EVR L++ Y EV NV
Sbjct: 186 EGSVKAWVNITYGCDEFCTYCIVPFTRGKERSRLPKDIINEVRELAELGYKEVTLLGQNV 245
Query: 67 N 67
N
Sbjct: 246 N 246
>gi|194335519|ref|YP_002017313.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelodictyon
phaeoclathratiforme BU-1]
gi|229890587|sp|B4SCB6.1|MIAB_PELPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|194307996|gb|ACF42696.1| RNA modification enzyme, MiaB family [Pelodictyon
phaeoclathratiforme BU-1]
Length = 440
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
+ Y FGCQMN D+ + S+L+ +GY A +IL+ TCA+RENA ++ L
Sbjct: 7 NTFYIHTFGCQMNQADSATITSLLQQAGYVAAESEDRAGIILLNTCAVRENAVDRIEHYL 66
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ + +K+ K+ L +G+LGC+ + ++ + A+DL+AGPD+Y+ LP+L+
Sbjct: 67 QHLQGLKKRDKR-----LIVGILGCIPQHQREEMFATSPAIDLLAGPDTYRTLPQLIEQA 121
Query: 173 YSNQTAINVLLSLDETYADITP 194
S ++ ++ ETY I P
Sbjct: 122 RSGAKPFSLDFNVAETYEGIDP 143
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 14/111 (12%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ S+SAFV +MRGC+NMC YC+VPFTRGRERS P ++++ EV+ L Y E+ NV
Sbjct: 146 QGSISAFVPVMRGCNNMCAYCVVPFTRGRERSHPFRAVMGEVQKLVASGYSEITLLGQNV 205
Query: 67 N---DTE-------VVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
N D E ++ ++ ++ ++V +HP++ LV T A R N
Sbjct: 206 NSYDDPEQGVNFAALLDAVSCAAPQARVRFTTSHPKDISGELVRTIANRPN 256
>gi|384921567|ref|ZP_10021543.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citreicella
sp. 357]
gi|384464659|gb|EIE49228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citreicella
sp. 357]
Length = 435
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ + +GCQMNV D+E + + GY + P +AD+IL+ TC IRE A KV+
Sbjct: 4 AKKLFIKTYGCQMNVYDSERMAEAMGGQGYVATDSPDDADMILLNTCHIREKAAEKVYSE 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L Y+ +K LKIGV GC+A+ ++ ++ +DLV GP SY LP LLA
Sbjct: 64 LGRYKGLKADRPD-----LKIGVAGCVAQAEGAEIMRRQPLVDLVVGPQSYHRLPDLLAR 118
Query: 172 TYSNQTAINVLLSLDETYADIT--PKA 196
T A++ ++ + +T PKA
Sbjct: 119 TQGGAKALDTDFPEEDKFEHLTARPKA 145
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRVMAEARDLVERGVREITLLGQNVNAYH 209
Query: 69 ------TEVVWSILKSSGYSKV----NHPREADVILV 95
++ + + G +++ +HP + D L+
Sbjct: 210 GHDGGLAGLIHDLARIDGLARIRFTTSHPNDMDDALI 246
>gi|84502860|ref|ZP_01000973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
HTCC2597]
gi|84388843|gb|EAQ01713.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis
HTCC2597]
Length = 440
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L SGY++V P EAD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGSGYTEVGSPEEADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
Y+ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RYKDLKAAKPD-----LKIGVAGCVAQAEGEEIIRRQPMVDLVVGPQSYHRLPEMEA 117
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP+ +L E R L ++ E+ NVN
Sbjct: 149 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVARVLTEARDLVERGVREITLLGQNVN 205
>gi|225872143|ref|YP_002753598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
ATCC 51196]
gi|225791726|gb|ACO31816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum
ATCC 51196]
Length = 448
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 7/114 (6%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E FGCQMNV+D+E V L+ GY++V AD+IL TC+IR+ AE KV++RL Y
Sbjct: 16 YLETFGCQMNVHDSEKVIGTLQQQGYTQVEEEAAADLILYNTCSIRDKAEQKVFNRLNDY 75
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
K++H + + F GVLGC+A++ + + E+ + LV+G SY+ LP +L
Sbjct: 76 ---KKLHAQGKRF----GVLGCVAQQEGEKIFERAPYVSLVSGSASYRKLPEML 122
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
+++I+ GCD C YC+VP+TRG+ERSR S+L E R +++ Y E+ NVN
Sbjct: 157 GYITIIEGCDKFCAYCVVPYTRGKERSRKSSSVLAEARRMAEAGYTEIQLLGQNVNSYHD 216
Query: 69 -------TEVVWSILKSSGYSKV----NHPRE 89
E++ ++ + G +V +HPR+
Sbjct: 217 PEGKKSFAELLAAVGEVPGIVRVRFTTSHPRD 248
>gi|83949580|ref|ZP_00958313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
ISM]
gi|83837479|gb|EAP76775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens
ISM]
Length = 440
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y + +GCQMNV D+E + L GY + P EAD+IL+ TC IRE A KV+
Sbjct: 4 AKKLYIKTYGCQMNVYDSERMAEALGGQGYVETQSPEEADMILLNTCHIREKAAEKVYSE 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R +K+ LKIGV GC+A+ + ++ ++ +DLV GP SY LP +
Sbjct: 64 LGRMRGLKEAKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPSSYHRLPEMEEK 118
Query: 172 TYSNQTAINVLLSLDETYADIT--PKA 196
T Q A+ ++ +A + PKA
Sbjct: 119 TRQGQKALVTDFPEEDKFARLKGRPKA 145
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 17/102 (16%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
SAF+S+ GCD C +C+VP+TRG E SRP++++LDE R L ++ E+ NVN
Sbjct: 150 SAFLSVQEGCDKFCAFCVVPYTRGAEYSRPVKAVLDEARDLIERGVREITLLGQNVNAYH 209
Query: 69 -----------TEVVWSILKSSGYSKV----NHPREADVILV 95
++W + K G ++ +HP + D L+
Sbjct: 210 GEGPDGAEWGLARLIWELDKLDGLQRIRFTTSHPNDMDAALI 251
>gi|320103836|ref|YP_004179427.1| MiaB family RNA modification protein [Isosphaera pallida ATCC
43644]
gi|319751118|gb|ADV62878.1| RNA modification enzyme, MiaB family [Isosphaera pallida ATCC
43644]
Length = 633
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
Query: 25 TYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV 84
T C P ERS P R ++ E GCQMNV D+E+V L+ GY
Sbjct: 22 TACAAPQPIDPERSAPGSDAPPPRR-----LFIETVGCQMNVLDSELVVERLRRDGYELT 76
Query: 85 NHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKK 144
+ P++AD IL TC++R++AE KV+ L R +K H + + IGVLGCMA++ +K
Sbjct: 77 SDPQQADTILFNTCSVRQHAEDKVYSALGRLRGLKAEHPE-----VTIGVLGCMAQKDQK 131
Query: 145 SLLEKEQALDLVAGPDSYKDLPRLLA 170
+L++ +DL+ GP + +P L+A
Sbjct: 132 RILQRAPHVDLMVGPGQLEVVPELIA 157
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 34/56 (60%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
AFV IM GCD CTYCIVP RG E+SR I++EVR L D+ EV VN
Sbjct: 203 AFVRIMMGCDKFCTYCIVPSVRGPEQSRHPDEIVEEVRNLVDQGTREVTLLGQTVN 258
>gi|284098392|ref|ZP_06385871.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
WGA-A3]
gi|283830565|gb|EFC34728.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp.
WGA-A3]
Length = 125
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMNV+D+E++ IL SG+ V H +ADV+LV TCAIRENAE KV +RL+
Sbjct: 37 RVYIETYGCQMNVSDSELMAGILTQSGHQTVTHIDDADVVLVNTCAIRENAETKVINRLQ 96
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLL 147
H+K R L IGV GCMA+ L+ LL
Sbjct: 97 HLN-----HRKRRQPELIIGVCGCMAQHLRDRLL 125
>gi|91202951|emb|CAJ72590.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 447
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 8/133 (6%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+FE FGCQMN D E+ +L+ GYS V+ EADVIL TC++R++AE KV+ L
Sbjct: 16 VFFETFGCQMNKLDAELSLGLLQEDGYSIVDKVEEADVILYNTCSVRQHAEDKVYSHLGA 75
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R++K+ H + IGVLGCMA++ +S+ ++ +DLV G + LP LL L
Sbjct: 76 LRTLKKKHPD-----VIIGVLGCMAQKDAQSIFKRMPHVDLVCGTRMFTRLPELL-LKIR 129
Query: 175 NQTAINVLLSLDE 187
N N +L++DE
Sbjct: 130 NHG--NHVLAVDE 140
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
AFV++MRGCDN C+YCIVP+ RGRE SR + + EV L E+ N+N
Sbjct: 159 AFVTVMRGCDNYCSYCIVPYVRGREVSRTIADVEREVLELVSNGCREITLLGQNIN 214
>gi|423714022|ref|ZP_17688281.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395421169|gb|EJF87425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 458
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++
Sbjct: 14 SKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSD 73
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R M+Q + PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 74 LGRLRVMRQERTPDK--PLMIGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPDLLEK 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 132 AKQGKKVIETDYAVEDKFAHLPP 154
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|372279627|ref|ZP_09515663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanicola sp.
S124]
Length = 441
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY++V P EAD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYTEVASPEEADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LK GV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RLRHLKAAKPD-----LKFGVAGCVAQAEGREIMLRQPMVDLVVGPQSYHRLPEMEARVR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
S + A++ + ++ + + PKA
Sbjct: 121 SGERALDTEMPEEDKFEKLKHRPKA 145
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP+ +L E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVDRVLREARDLVERGVREITLLGQNVN 206
>gi|451980568|ref|ZP_21928957.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Nitrospina gracilis 3/211]
gi|451762304|emb|CCQ90192.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Nitrospina gracilis 3/211]
Length = 452
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 5/112 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E FGCQMNV DT+ + +L SGY++ H +AD+ILV TC+IRE AE KV+
Sbjct: 4 VYLETFGCQMNVADTDRMELLLFHSGYTRTQHAEDADLILVNTCSIREKAEQKVYSLFGS 63
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
+R +K+ + L G+ GC+A++ ++ LL++ LD + GPD+ +D+P
Sbjct: 64 FRPLKKQNPD-----LLFGLAGCLAQQEQEFLLKRMPFLDFIIGPDAVEDIP 110
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF++I++GCD C++C+VPFTRGRE+SR I +EVR L D+ E+ NVN
Sbjct: 148 SAFINIIKGCDKFCSFCVVPFTRGREKSREASEIYEEVRQLVDQGAREIILLGQNVN 204
>gi|78186125|ref|YP_374168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
luteolum DSM 273]
gi|123743738|sp|Q3B6A6.1|MIAB_PELLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|78166027|gb|ABB23125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium luteolum DSM
273]
Length = 446
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y + FGCQMN D+ ++ +L +G+ + + ++ADV+L+ TCA+RENA K+ L
Sbjct: 6 RFYIQTFGCQMNEADSGIIARVLLDAGFRRADTEQDADVVLLNTCAVRENAVEKIAHLLE 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K K+ +T L++GVLGC+ + ++ + + A+D +AGPDSY+ LP L+
Sbjct: 66 HLKGAK---KRRKT--LQVGVLGCVPQHQREEMFSRFPAIDFIAGPDSYRRLPSLIDDAA 120
Query: 174 SNQTAINVLLSLDETYADI 192
S + + ETY I
Sbjct: 121 SAVRSAMLDFDPSETYVGI 139
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E +SAF+ +MRGC+NMC +C+VPFTRGRERS+P+ + E R L++ Y E+
Sbjct: 141 QVREGRISAFIPVMRGCNNMCAFCVVPFTRGRERSQPLAMVTGEARELAEAGYREITLLG 200
Query: 64 MNVN 67
NVN
Sbjct: 201 QNVN 204
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + FGCQMNVND+E + IL++ GY+ + EADVILV TC++RE + KV L
Sbjct: 2 KFYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + KKH + IGV GC+A+R + +K +D+V G + LP LL
Sbjct: 62 EFKKV----KKHNPNAV-IGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAK 116
Query: 174 SNQTAINVLLSLDE 187
S AI +L +DE
Sbjct: 117 SGNKAIEILEEIDE 130
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E+ +AFV+++RGCD CTYCIVP TRGRERSR + IL EV+ L + E+ NV
Sbjct: 143 ENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILREVQYLVEDGVKEIHLIGQNV 202
Query: 67 N-------DTEVVWSILKS----SGYSKV----NHPREAD 91
D + W +LK+ G ++ HPR+ D
Sbjct: 203 TAYGKDFGDVK-FWELLKAVAEVDGVERIRFTTGHPRDLD 241
>gi|358341476|dbj|GAA28735.2| regulatory subunit-associated protein 1 [Clonorchis sinensis]
Length = 493
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 67/121 (55%), Gaps = 26/121 (21%)
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLL-------- 147
MTCAIRE+AE K+W RL YR + K R +KIGVLGCMAERLK+ LL
Sbjct: 1 MTCAIRESAENKIWKRLHHYR----LVAKQRGRSIKIGVLGCMAERLKEKLLCNPDFSID 56
Query: 148 --------------EKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADIT 193
D V GPD+Y+DLPRL+A ++ +V LSL+ETYAD+
Sbjct: 57 SLTSGAISNSEPRPSPSVGADFVCGPDAYRDLPRLIADAHAGIQGASVALSLEETYADVR 116
Query: 194 P 194
P
Sbjct: 117 P 117
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 43/62 (69%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65
N+ S SAF+S+MRGCDNMCTYCIVPF RGRERSRP+ SI DE L + + N
Sbjct: 131 NQSSPSAFLSVMRGCDNMCTYCIVPFVRGRERSRPLSSIRDEAAQLFEAGVRNITLLGQN 190
Query: 66 VN 67
VN
Sbjct: 191 VN 192
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMNVND+E + ILK+ GY +EADVILV TC++RE + KV L
Sbjct: 2 KYYIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + KK + + IGV GC+A+R +L+K +D+V G + LP+LL
Sbjct: 62 EFKKI----KKDKPNAI-IGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAK 116
Query: 174 SNQTAINVLLSLDE 187
S A+ +L +DE
Sbjct: 117 SGNKAVEILEEIDE 130
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 14/99 (14%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E+ +AFV+++RGCD CTYCIVP TRG+ERSR + IL EV+ L + E+ NV
Sbjct: 143 ENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILREVQFLVEDGVKEIHLIGQNV 202
Query: 67 NDT----------EVVWSILKSSGYSKV----NHPREAD 91
E++ ++ G ++ HPR+ D
Sbjct: 203 TAYGKDLGDVKFWELLQAVASVPGVERIRFTTGHPRDLD 241
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ SI +E R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVKYVKDFSIPEEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EA+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + K +
Sbjct: 116 EANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEESVVKKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKV 220
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVND-----TEVVWSI------LKSSGYSKV----NHPREADVILVMTCAIREN 103
NVN T++ + + L+ +++ +HPR+ D L+ A R N
Sbjct: 279 QNVNAYGKDFTDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEVLAKRGN 333
>gi|121601992|ref|YP_989492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
KC583]
gi|421761294|ref|ZP_16198097.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
bacilliformis INS]
gi|229890427|sp|A1UU39.1|MIAB_BARBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|120614169|gb|ABM44770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis
KC583]
gi|411173078|gb|EKS43126.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
bacilliformis INS]
Length = 458
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D++ + L + GY P +AD+ILV TC IRE A K++
Sbjct: 14 SKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTQTPNDADLILVNTCHIREKAAEKLYSD 73
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R M+Q K+ PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 74 LGRLRMMRQ--KRTSEKPLMIGVTGCVAQAEGDEILRRSPTVDLVVGPQMYHRLPELLQQ 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ + ++++ + + P
Sbjct: 132 AQQGKKIVETNYAVEDKFNHLPP 154
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I DE R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITDEARQLIEADVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSTDGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDESLI 267
>gi|395791971|ref|ZP_10471410.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella vinsonii subsp. arupensis Pm136co]
gi|395432890|gb|EJF98864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella vinsonii subsp. arupensis Pm136co]
Length = 458
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQERTPDK--PLMIGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPDLLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKVIETDYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|149202109|ref|ZP_01879082.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
gi|149144207|gb|EDM32238.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035]
Length = 440
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + + SGY + P EAD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMAEAMGGSGYVETQDPAEADMILLNTCHIREKAAEKVYSEL- 64
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
MKQ+ K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 65 --GRMKQL--KLDKPDLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEARVR 120
Query: 174 SNQTAINVLLSLDETYADI--TPKA 196
+ + A++ +++ + + PKA
Sbjct: 121 AGEKALDTEFPIEDKFDTLRHRPKA 145
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP +L+E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPASRVLEEARDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILV 95
+VW++ + G ++ +HP + D L+
Sbjct: 210 GAGEGGDWGLARLVWALSEIDGLERIRFTTSHPNDMDDDLI 250
>gi|399070228|ref|ZP_10749703.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Caulobacter sp. AP07]
gi|398044434|gb|EJL37253.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Caulobacter sp. AP07]
Length = 450
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y + +GCQMNV D+E + +L+ GY V+ P AD++++ TC IRE A KV+ L
Sbjct: 8 RLYIKTYGCQMNVYDSERMADVLRPLGYGVVDDPEGADLVVLNTCHIREKATEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + MK K + I V GC+A+ K ++ ++ A+DLV GP +Y LP L+A +
Sbjct: 68 YIKQMK-TRKAQAGGTMTIAVAGCVAQAEGKEIMHRQPAVDLVVGPQAYHQLPELIARAH 126
Query: 174 -SNQTAINVLLSLDETYADITPKAVSTDG 201
+ ++ + DE + D P +G
Sbjct: 127 RATGERLSADFAADEKF-DALPAERQVNG 154
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ V+AF+++ GCD CT+C+VP+TRG E SRP +SI DE + L+D+ EV NVN
Sbjct: 153 NGVTAFLTVQEGCDKFCTFCVVPYTRGGEWSRPPESIEDEAKRLADQGVREVTLLGQNVN 212
Query: 68 D--------TEVVWSILKSSGYSKV----NHPRE 89
+V + K G ++ +HPR+
Sbjct: 213 AYDGGGYTLARLVRRLAKIPGLDRIRYTTSHPRD 246
>gi|163867522|ref|YP_001608721.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
tribocorum CIP 105476]
gi|229890428|sp|A9IMW7.1|MIAB_BART1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|161017168|emb|CAK00726.1| bifunctional enzyme [Bartonella tribocorum CIP 105476]
Length = 458
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQERTPDK--PLTVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPELLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKIIETDYAVEDKFAHLPP 154
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSADGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|260431178|ref|ZP_05785149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
lacuscaerulensis ITI-1157]
gi|260415006|gb|EEX08265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter
lacuscaerulensis ITI-1157]
Length = 439
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMSEALGGQGYVETQSPEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + A++ ++ + + PKA
Sbjct: 121 AGEKALDTDFPEEDKFEKLKNRPKA 145
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP IL E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAQDLVERGVREITLLGQNVN 206
>gi|163784661|ref|ZP_02179488.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880071|gb|EDP73748.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1]
Length = 197
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN+ND++ + ILK+ GY EADVILV TC++RE + KV L
Sbjct: 3 KYYIRTFGCQMNINDSQKMAGILKTLGYEPAESWEEADVILVNTCSVREKPDQKVLSALG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + K++ IGV GC+A+R +L+K +D+V G + LP+LL
Sbjct: 63 EFKKV-----KNKNPDAVIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAQ 117
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
A+ ++ +DE + D + + YV
Sbjct: 118 QGNKAVEIIEDIDENETQLDSYPTVRDNKYTAYV 151
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSD 53
+ ++ +A+V+I+RGCD CTYCIVP TRG+ERSR + IL EV+ L +
Sbjct: 142 VRDNKYTAYVTIIRGCDKKCTYCIVPATRGKERSRRIGEILQEVQYLVE 190
>gi|194334797|ref|YP_002016657.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prosthecochloris aestuarii DSM 271]
gi|229890596|sp|B4S564.1|MIAB_PROA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|194312615|gb|ACF47010.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii
DSM 271]
Length = 441
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ KV FGCQMN DTE++ S+L + GY V +AD++++ TCA+RENA K+
Sbjct: 1 MTKKVSIRTFGCQMNQADTEIISSLLTAEGYCLVAEEDDADLVMLNTCAVRENAVEKIMH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + R L +GV+GC+ + ++ + +K +D +AGPDSY+ LP L+
Sbjct: 61 HLD-----SLKGLRRRRRGLVVGVIGCVPQYYREEMFQKSGVIDFIAGPDSYRKLPGLIR 115
Query: 171 LTYSNQTAINVLLSLDETYADITP 194
+ + L+ ETY DI P
Sbjct: 116 NAFQGIRGAELFLTQSETYGDIEP 139
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN- 67
S+SAF+ +MRGC+NMC +C+VPFTRGRERSR +QS+LDEVR L + Y E+ NVN
Sbjct: 144 SISAFIPVMRGCNNMCAFCVVPFTRGRERSRSLQSVLDEVRRLEGQGYRELTLLGQNVNS 203
Query: 68 --DTE-------VVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
D E ++ + K++G +V +HP++ LV A REN
Sbjct: 204 YRDDEAGADFALLLDEVSKAAGEMRVRFTTSHPKDISEDLVNVVAQREN 252
>gi|451941509|ref|YP_007462146.1| RNA modification enzyme, MiaB family [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900896|gb|AGF75358.1| RNA modification enzyme, MiaB family [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 458
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQERTPDK--PLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPDLLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKVIETDYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|49475038|ref|YP_033079.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
henselae str. Houston-1]
gi|81648272|sp|Q6G4V6.1|MIAB_BARHE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49237843|emb|CAF27038.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
Length = 458
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL T
Sbjct: 76 RLRVMRQERTPDK--PLMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPDLLEQTK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + ++++ +A + P
Sbjct: 134 QGKKIVATEYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQNVNGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|322421071|ref|YP_004200294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
gi|320127458|gb|ADW15018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18]
Length = 441
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y E FGCQMNV+D+E + +++K GY + P EAD++L+ TC+IR AE +V+
Sbjct: 4 AKKLYLETFGCQMNVSDSEKIVTLMKGIGYQRTADPVEADLVLLNTCSIRATAEQRVYGH 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++SMK+ + L IGV GC+A++ + LL+K ++LV G + L ++++
Sbjct: 64 LGKFKSMKK-----QKPGLIIGVGGCVAQQEGERLLKKAPFVNLVFGTHNLHLLQKMVSG 118
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ ++ DE D+ P A S G
Sbjct: 119 AEEGKQSVATDFLDDEKRFDLFPHAESEGG 148
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSR 39
+E VS FV++M+GCDN C YCIVP RGRE SR
Sbjct: 145 SEGGVSRFVTVMQGCDNFCAYCIVPHVRGREISR 178
>gi|114770160|ref|ZP_01447698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
HTCC2255]
gi|114548997|gb|EAU51880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium
HTCC2255]
Length = 442
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S +Y + FGCQMNV D+E + + L + GY++V+ P EAD+IL+ TC IRE A K++
Sbjct: 4 SKNLYIKTFGCQMNVYDSERMATSLGADGYNEVSSPEEADMILLNTCHIREKAAEKIYSD 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
L ++S+K + LKIGV GC+A+ + +++++ +D+V GP +Y LP +
Sbjct: 64 LGRFKSLKA-----KNPDLKIGVTGCVAQAEGEEIIKRQPLVDIVVGPQAYHRLPAM 115
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VPFTRG E SRP+ I++E R L ++ ++ NVN
Sbjct: 150 SAFLTVQEGCDKFCAFCVVPFTRGAEVSRPVLQIINEARDLVERGVRDITLLGQNVN 206
>gi|126730915|ref|ZP_01746724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
gi|126708631|gb|EBA07688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37]
Length = 435
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K++ + +GCQMNV D+E + + GY P +AD+IL+ TC IRE A KV+
Sbjct: 1 MTRKLFIKTYGCQMNVYDSERMAEAMGGQGYVVTETPDDADMILLNTCHIREKAAEKVYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L Y+ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A
Sbjct: 61 ELGRYKGLKAAKPD-----LKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEA 115
Query: 171 LTYSNQTAINVLLSLDETYADIT--PKA 196
+ A++ ++ + +T PKA
Sbjct: 116 KARTGAKALDTDFPEEDKFEHLTARPKA 143
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP + ++ E R L ++ E+ NVN
Sbjct: 148 TAFLTVQEGCDKFCAFCVVPYTRGAELSRPAERVMREARDLVERGVREITLLGQNVN 204
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I +E R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVKYVKDFAIPEEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EA+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + K +
Sbjct: 116 EANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEESVVKKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKV 220
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVND-----TEVVWSI------LKSSGYSKV----NHPREADVILVMTCAIREN 103
NVN T++ + + L+ +++ +HPR+ D L+ A R N
Sbjct: 279 QNVNAYGKDFTDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEVLAKRGN 333
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I +E R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVKYVKDFAIPEEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EA+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + K +
Sbjct: 116 EANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEESVVKKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKV 220
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVND-----TEVVWSI------LKSSGYSKV----NHPREADVILVMTCAIREN 103
NVN T++ +S+ L+ +++ +HPR+ D L+ A R N
Sbjct: 279 QNVNAYGKDFTDIQYSLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEVLAKRGN 333
>gi|56708793|ref|YP_164834.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria
pomeroyi DSS-3]
gi|56680478|gb|AAV97143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria pomeroyi DSS-3]
Length = 462
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 49 RALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
R +SD K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A
Sbjct: 22 RPMSDPKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAE 81
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
KV+ L ++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP
Sbjct: 82 KVYSELGRFKGLKAAKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLP 136
Query: 167 RLLALTYSNQTAINVLLSLDETYADIT--PKA 196
L A T + + A++ ++ + + PKA
Sbjct: 137 ELEAKTRAGEKALDTDFPEEDKFEKLKGRPKA 168
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP IL E L ++ E+ NVN
Sbjct: 173 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREANELVERGVREITLLGQNVNAYH 232
Query: 71 ------------VVWSILKSSGYSKV----NHPRE-ADVILVM--TCA 99
++W + K G ++ +HP + AD ++ TCA
Sbjct: 233 GAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPNDMADDLIEAHGTCA 280
>gi|403530131|ref|YP_006664660.1| hypothetical protein RM11_0203 [Bartonella quintana RM-11]
gi|403232203|gb|AFR25946.1| hypothetical protein RM11_0203 [Bartonella quintana RM-11]
Length = 458
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+IL+ TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTF--PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
R M+Q RT PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQ----ERTLDKPLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPDLLEQ 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
T + + +++ +A + P
Sbjct: 132 TKQGKKIVETDYPVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQIANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|423711031|ref|ZP_17685351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis Sb944nv]
gi|395414945|gb|EJF81380.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis Sb944nv]
Length = 457
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 15 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVATQTPNDADLILVNTCHIREKAAEKLYSDLG 74
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q ++ PL I V GC+A+ + +L + +DLV GP Y LP LL T
Sbjct: 75 RLRIMRQ--ERTADNPLMIAVTGCVAQAEGREILRRAPTVDLVIGPQMYHRLPDLLEQTK 132
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + ++++ +A + P
Sbjct: 133 QGKKIVATDYAVEDKFAHLPP 153
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 164 VSAFLTVQEGCDKFCTFCVVPYTRGSEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 223
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 224 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 266
>gi|395780925|ref|ZP_10461369.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis 085-0475]
gi|395416800|gb|EJF83162.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis 085-0475]
Length = 457
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 15 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVATQTPNDADLILVNTCHIREKAAEKLYSDLG 74
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q ++ PL I V GC+A+ + +L + +DLV GP Y LP LL T
Sbjct: 75 RLRIMRQ--ERTADNPLMIAVTGCVAQAEGREILRRAPTVDLVIGPQMYHRLPDLLEQTK 132
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + ++++ +A + P
Sbjct: 133 QGKKIVATDYAVEDKFAHLPP 153
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 164 VSAFLTVQEGCDKFCTFCVVPYTRGSEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 223
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 224 HGQSTNGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 266
>gi|260427313|ref|ZP_05781292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
gi|260421805|gb|EEX15056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45]
Length = 435
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + + GY + + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A
Sbjct: 66 RYKVLKAERPD-----LKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
S + A++ ++ + + PKA
Sbjct: 121 SGEKALDTDFPEEDKFERLQARPKA 145
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP +L E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRVLTEARDLVERGVREITLLGQNVN 206
>gi|240849891|ref|YP_002971280.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
gi|240267014|gb|ACS50602.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup]
Length = 458
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQIPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQERTPDK--PLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPELLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKIIETDYAVEDKFAHLPP 154
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEALQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSADGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|374311412|ref|YP_005057842.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Granulicella mallensis MP5ACTX8]
gi|358753422|gb|AEU36812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Granulicella mallensis MP5ACTX8]
Length = 472
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E FGCQMN +D+E V L GYS+V +A +IL TC+IR+ AE KV+ RL Y
Sbjct: 19 YIETFGCQMNAHDSEKVVGTLLREGYSQVVDEADAGLILYNTCSIRDKAEQKVFHRLNEY 78
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
+ M+ K K VLGC+A++ + E+ + LVAG SY++LP +LA +
Sbjct: 79 KRMQGEGK-------KFAVLGCVAQQEGNKIFERAPYVSLVAGSASYRNLPEMLARLEAG 131
Query: 176 QTAINVL--LSLDETY 189
+T I L DET+
Sbjct: 132 ETRITGLDDRQTDETF 147
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 14/92 (15%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
+++I+ GCD C+YC+VP+TRG+ERSR S+L E + ++ + E+ NVN
Sbjct: 160 GYITIIEGCDKFCSYCVVPYTRGKERSRTSASVLAEAQRIAQMGFTEIQLLGQNVNSYLD 219
Query: 69 -------TEVVWSILKSSGYSKV----NHPRE 89
E++ ++ + +G +V +HPR+
Sbjct: 220 PSGKRSFAELLAAVGEVNGIKRVRFTTSHPRD 251
>gi|395785532|ref|ZP_10465264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella tamiae Th239]
gi|423717569|ref|ZP_17691759.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella tamiae Th307]
gi|395425079|gb|EJF91250.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella tamiae Th239]
gi|395426969|gb|EJF93085.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella tamiae Th307]
Length = 457
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D++ + L + GY P +AD+ILV TC IRE A K++
Sbjct: 13 SRKVFIKTYGCQMNVYDSQRMSDSLDAVGYVTTESPDDADLILVNTCHIREKAAEKLYSD 72
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R ++Q K+ P+ IGV GC+A+ + +L + +DLV GP +Y LP +L
Sbjct: 73 LGRLRKLRQ--KRDPLRPVTIGVTGCVAQAEGEEILRRAPTVDLVVGPQTYHRLPEILNK 130
Query: 172 TYSNQTAINVLLSLDETYADI 192
Q + ++++ +A +
Sbjct: 131 VQKGQKIVETAYAVEDKFAHL 151
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR + I DE R L D E+ NVN
Sbjct: 164 VSAFLTVQEGCDKFCTFCVVPYTRGAEVSRSVAQISDEARQLVDAGVKEITLLGQNVNGW 223
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 224 HFDATDEKKWRLGDLLYHLAKIPGLERLRYTTSHPRDMDDSLI 266
>gi|85705226|ref|ZP_01036325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
gi|85670099|gb|EAQ24961.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217]
Length = 446
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + + +GY + P EAD+IL+ TC IRE A KV+ L
Sbjct: 12 KLYIKTYGCQMNVYDSERMAEAMGGAGYVETQDPAEADMILLNTCHIREKAAEKVYSELG 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 72 RMRQFKDDKPD-----LKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAQVR 126
Query: 174 SNQTAINVLLSLDETYADI--TPKAV 197
+ A++ L++ + + PKA
Sbjct: 127 AGGKALDTDFPLEDKFDKLRHRPKAA 152
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP+ +L+E R L ++ E+ NVN
Sbjct: 156 TAFLTVQEGCDKFCAFCVVPYTRGSEVSRPVARVLEEARDLVERGVREITLLGQNVNAYH 215
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILV 95
++W++ G ++ +HP + D L+
Sbjct: 216 GAGEGGDWGLARLIWALNDIDGLERIRFTTSHPNDMDDDLI 256
>gi|49473881|ref|YP_031923.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
quintana str. Toulouse]
gi|81647252|sp|Q6G0N1.1|MIAB_BARQU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49239384|emb|CAF25717.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
Length = 458
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+IL+ TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTF--PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
R M+Q RT PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQA----RTLDKPLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPDLLEQ 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
T + + +++ +A + P
Sbjct: 132 TKQGKKIVETDYPVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQIANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|114766591|ref|ZP_01445547.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelagibaca bermudensis
HTCC2601]
gi|114541207|gb|EAU44259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. HTCC2601]
Length = 435
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + + GY + + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A
Sbjct: 66 RYKGLKSERPD-----LKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ A++ ++ + + PKA
Sbjct: 121 GGEKALDTDFPEEDKFERLKSRPKA 145
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP +L E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRVLTEARDLVERGVRELTLLGQNVN 206
>gi|300175767|emb|CBK21310.2| unnamed protein product [Blastocystis hominis]
Length = 500
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 64 MNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHK 123
MN D+E++ ++L G ++ + EADVI++ TC++RE+AE ++W+RL+ +R++ + +K
Sbjct: 1 MNRADSEIMETLLSECGMTESKNEEEADVIIMNTCSVREHAESRIWNRLKQFRNLDKKYK 60
Query: 124 KHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLL 183
K RT + + GCMA RL+ LL E +D+V GPDSY LP L+ ++ + A + L
Sbjct: 61 K-RTI---LCISGCMATRLRTKLL--ESGVDVVVGPDSYVHLPPLIFDAFNGKQAFHTEL 114
Query: 184 SLDETYADITP 194
+ + Y I+P
Sbjct: 115 NGNNDYDAISP 125
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 14 VSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++IMRGC+NMC+YC+VP+TRGRERS + +L EV+ + Y E+ NVN
Sbjct: 136 ITIMRGCNNMCSYCVVPYTRGRERSVDVDVVLREVKRAEEHGYKEIMLLGQNVN 189
>gi|386811689|ref|ZP_10098914.1| RNA modification protein [planctomycete KSU-1]
gi|386403959|dbj|GAB61795.1| RNA modification protein [planctomycete KSU-1]
Length = 452
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V+FE FGCQMN D E+ +L+ GY V++ EADVIL TC++R++AE KV+ L
Sbjct: 17 VFFETFGCQMNKLDAELSLGLLQEEGYRIVDNVNEADVILFNTCSVRQHAEDKVYSHL-- 74
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
S+K + K+H + +GVLGCMA++ +++ ++ +DLV G + LP L+ S
Sbjct: 75 -GSLKTLKKRHPD--VIVGVLGCMAQKDGEAIFKRMPHVDLVCGTRMFSRLPELILKIRS 131
Query: 175 NQTAINVLLSLDETYADITPKAVS 198
+ + + L++DE + +AV+
Sbjct: 132 HGSHV---LAIDEDHIVNVKRAVT 152
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
AFV++MRGCDN C+YCIVP+ RGRE SR + I +EV+AL
Sbjct: 160 AFVTVMRGCDNFCSYCIVPYVRGREVSRTITDIKEEVQAL 199
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +D+E V IL++ GY+ EAD+IL+ TC++RE AE KV+ +L
Sbjct: 3 KYYIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K+ R L IG+ GCMA+R+K+ L+EK +D V G + +LP++L
Sbjct: 63 ELRKLKK-----RNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKIL 113
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E+ A++ I+ GC+N CTYCIVP+ RGRE+SR + I+ EV L+ + EV NV
Sbjct: 142 ENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQNV 201
Query: 67 N 67
+
Sbjct: 202 D 202
>gi|254463508|ref|ZP_05076924.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
HTCC2083]
gi|206680097|gb|EDZ44584.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
bacterium HTCC2083]
Length = 440
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A + K++ + +GCQMNV D+E + L +SGY++ P +AD+IL+ TC IRE A K++
Sbjct: 2 AETKKLFIKTYGCQMNVYDSERMSEALGASGYTETQTPDDADMILLNTCHIREKAAEKIY 61
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L +S+K LKIGV GC+A+ ++ ++ A+DLV GP SY L +
Sbjct: 62 SELGRMKSLKTAKPD-----LKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLAEME 116
Query: 170 ALTYSNQTAINVLLSLDETYADIT--PKA 196
T + A++ +++ + + PKA
Sbjct: 117 IKTRRGEKALDTDFPIEDKFEALKHRPKA 145
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 17/96 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP+Q I+DE + L ++ E+ NVN
Sbjct: 150 AAFLTVQEGCDKFCAFCVVPYTRGAETSRPVQRIVDEAKNLVERGVREITLLGQNVNAYH 209
Query: 69 -----------TEVVWSILKSSGYSKV----NHPRE 89
+++W + K G +++ +HP +
Sbjct: 210 GTGPDGNEWGLAQLIWELDKVDGLARIRFTTSHPND 245
>gi|395789277|ref|ZP_10468800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella taylorii 8TBB]
gi|395430324|gb|EJF96368.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella taylorii 8TBB]
Length = 458
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R ++Q ++ PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVLRQERAPNK--PLMVGVTGCVAQAEGSEILRRAPNVDLVIGPQMYHRLPDLLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKVIETDYAVEDKFAHLPP 154
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SRP++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRPVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSAHGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|261749500|ref|YP_003257186.1| RNA modification protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497593|gb|ACX84043.1| RNA modification protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 466
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 88/143 (61%), Gaps = 13/143 (9%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMN++DTE++ SIL +G+ N+ ++A +IL+ TCAIR+ AE + +RL
Sbjct: 16 YIESYGCQMNISDTEIIISILSKNGFLLTNNLKKAHIILLNTCAIRKKAELSIKNRLENL 75
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R +K ++K PL G+LGC+++ K S L +D GP+SY+ +P ++ L N
Sbjct: 76 RYLKSNNQK---IPL-FGILGCLSKSEKYSNL-----IDFSIGPNSYRKIPDIIRLVMMN 126
Query: 176 --QTAINVLLS--LDETYADITP 194
+ +LLS +ETY +I+P
Sbjct: 127 DEKKIKPILLSENQNETYENISP 149
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ F+SI RGCDNMCT+CIVPFTRGRERS SI+ E L +K Y EV NV+
Sbjct: 156 ITTFLSITRGCDNMCTFCIVPFTRGRERSSSPYSIIKECENLYEKGYKEVTLLGQNVD 213
>gi|221232993|ref|YP_002515429.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
crescentus NA1000]
gi|220962165|gb|ACL93521.1| tRNA 2-methylthioadenosine synthase [Caulobacter crescentus NA1000]
Length = 448
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ + +GCQMNV D+E + +L+ GY V+ P AD++++ TC IRE A KV+ L
Sbjct: 8 RLFIKTYGCQMNVYDSERMADVLRPLGYGVVDEPEGADLVVLNTCHIREKATEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + MK K + I V GC+A+ K ++ +++A+DLV GP +Y LP L+A +
Sbjct: 68 YIKQMKD-RKAEAGGRMTIAVAGCVAQAEGKEIMNRQKAVDLVVGPQAYHQLPELIARAH 126
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E + L+D+ EV NVN
Sbjct: 154 GVTAFLTVQEGCDKFCTFCVVPYTRGGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNA 213
Query: 69 --------TEVVWSILKSSGYSKV----NHPRE 89
++V + K G ++ +HPR+
Sbjct: 214 YDGDGSTLAKLVRQLAKIDGLDRIRYTTSHPRD 246
>gi|395778720|ref|ZP_10459232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae Re6043vi]
gi|423714966|ref|ZP_17689190.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae F9251]
gi|395417928|gb|EJF84265.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae Re6043vi]
gi|395430450|gb|EJF96492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae F9251]
Length = 458
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A KV+ + +GCQMNV D++ + L + GY P +AD+ILV TC IRE A K++
Sbjct: 12 AAPKKVFIKTYGCQMNVYDSQRMTDSLSAQGYVTTQTPDDADLILVNTCHIREKAAEKLY 71
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP L
Sbjct: 72 SDLGRLRVMRQERTPDK--PLTVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPEFL 129
Query: 170 ALTYSNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 130 EKAKQGKKIIETDYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSADGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|430746630|ref|YP_007205759.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Singulisphaera acidiphila DSM 18658]
gi|430018350|gb|AGA30064.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Singulisphaera acidiphila DSM 18658]
Length = 475
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E GCQMN+ D+E+V L++ GY + +AD IL TC++R++AE K++ L
Sbjct: 10 KLYIETVGCQMNLLDSELVVGKLRNEGYELTDDIGKADTILYNTCSVRQHAEDKIYSALG 69
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +KQ+ + L IGVLGCMA++ +K +L++ +D+V GP +P LL L
Sbjct: 70 RIKQLKQLKPE-----LTIGVLGCMAQKDQKQILKRAPHVDIVVGPGQLARVPELLVLAK 124
Query: 174 SNQT 177
T
Sbjct: 125 EEAT 128
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
AFV IM GCD CTYCIVP RG E+SRP I+DE RAL+D+ E+ VN
Sbjct: 167 AFVRIMMGCDKFCTYCIVPSVRGPEQSRPAAVIVDEARALADQGVKEITLLGQTVN 222
>gi|300728187|ref|ZP_07061557.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
gi|299774549|gb|EFI71171.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14]
Length = 101
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 5/102 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K++ E +GCQMNV D+EVV S++K +GY ++ EAD I + TC++RENAE K+++
Sbjct: 1 MDKKLFIETYGCQMNVADSEVVASVMKMAGYETTDNEDEADAIFLNTCSVRENAENKIFN 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQA 152
RL ++ KK R L GVLGCMAER+K+ L++ A
Sbjct: 61 RL---ETLHAEQKKGRKVIL--GVLGCMAERVKEDLVQNHYA 97
>gi|254511318|ref|ZP_05123385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
bacterium KLH11]
gi|221535029|gb|EEE38017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae
bacterium KLH11]
Length = 439
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETKSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A T
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKTR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ A++ ++ + + PKA
Sbjct: 121 GGEKALDTDFPEEDKFEKLKSRPKA 145
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP I+ E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRIIREAQDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILV 95
++W + K G ++ +HP + D L+
Sbjct: 210 GAGPDGDMTLAALIWELNKVDGLERIRFTTSHPNDMDDALI 250
>gi|94502388|ref|ZP_01308846.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
gi|94451055|gb|EAT14022.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
Length = 438
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 8/132 (6%)
Query: 65 NVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKK 124
N++D+E+V SIL + G+ K + +EA++IL+ TC+IR+ +E K+ R+ +K I KK
Sbjct: 1 NISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRI---NQIKFIIKK 57
Query: 125 HRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ-TAINVLL 183
+ + IG+LGCMA + K +++++ ++LV GPDSY+++P L+ + + I+
Sbjct: 58 NN--DILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLINNFFKKKGEYISTSF 113
Query: 184 SLDETYADITPK 195
S ETYADI PK
Sbjct: 114 SKTETYADIIPK 125
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E ++AFV+IMRGCDNMCT+C+VPFTRGRE+SR SI+ E + L K Y E+ NV
Sbjct: 128 EKKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKECKFLFKKGYKEIILLGQNV 187
>gi|295687475|ref|YP_003591168.1| MiaB family RNA modification enzyme [Caulobacter segnis ATCC 21756]
gi|295429378|gb|ADG08550.1| RNA modification enzyme, MiaB family [Caulobacter segnis ATCC
21756]
Length = 448
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ + +GCQMNV D+E + +L+ GY V+ P AD++++ TC IRE A KV+ L
Sbjct: 8 RLFIKTYGCQMNVYDSERMADVLRPLGYGVVDDPEGADLVVLNTCHIREKATEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + MK K + I V GC+A+ K ++ +++A+DLV GP +Y LP L+A +
Sbjct: 68 YIKQMKD-RKAEAGGRMTIAVAGCVAQAEGKEIMHRQKAVDLVVGPQAYHQLPELIARAH 126
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E + L+D+ EV NVN
Sbjct: 154 GVTAFLTVQEGCDKFCTFCVVPYTRGGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNA 213
Query: 69 --------TEVVWSILKSSGYSKV----NHPRE 89
++V + + G ++ +HPR+
Sbjct: 214 YDGDGSTLAKLVRQLARIDGLDRIRYTTSHPRD 246
>gi|395787145|ref|ZP_10466746.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella birtlesii LL-WM9]
gi|395411569|gb|EJF78090.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella birtlesii LL-WM9]
Length = 458
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R ++Q ++ PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVLRQ--ERAPDKPLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPDLLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKVIETDYAVEDKFAHLPP 154
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SRP++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRPVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSAHGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|84688004|ref|ZP_01015867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maritimibacter
alkaliphilus HTCC2654]
gi|84663985|gb|EAQ10486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
HTCC2654]
Length = 443
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ +GCQMNV D+E + + GY +V P EAD+IL+ TC IRE A KV+ L
Sbjct: 10 KLFIRTYGCQMNVYDSERMAEAMGGQGYVEVGSPDEADMILLNTCHIREKAAEKVYSELG 69
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP +Y LP ++
Sbjct: 70 RFKDLKDAKPD-----LKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQTYHRLPEMVEKVG 124
Query: 174 SNQTAINVLLSLDETY 189
+ A++ L++ +
Sbjct: 125 RGEKALDTDFPLEDKF 140
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP + IL E R L ++ E+ NVN
Sbjct: 154 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPPERILREARELVERGVREITLLGQNVN 210
>gi|395782565|ref|ZP_10462951.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella rattimassiliensis 15908]
gi|395417302|gb|EJF83641.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella rattimassiliensis 15908]
Length = 462
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPDDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q ++ PL +GV GC+A+ +L + +DLV GP Y LP L
Sbjct: 76 RLRIMRQ--ERTPDTPLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPEFLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKIIETDYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSTDGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|374290272|ref|YP_005037325.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377064|gb|AEU09252.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 463
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMN++D E+V SIL ++G+ + + A++IL+ +C+IR E + +RL+
Sbjct: 14 YIESYGCQMNISDNEIVTSILLNNGFFLTENLKIANIILLNSCSIRTKVELAIKNRLQKL 73
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
+ +K + P+ G+LGC++ +KK+ L+ ++ GPD YK +P +++L+
Sbjct: 74 QYLK------KEKPILFGILGCLSNSMKKNFLD-NNLINFTIGPDYYKKIPSIISLSMKG 126
Query: 176 QTAINVLLSLDETYADITP 194
+ ++ S ETY +I P
Sbjct: 127 EKISHIFSSKKETYDNIKP 145
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
++ ++AF+SI RGCDNMCT+CIVPFTRGRE SR SI+ E + L K + EV NV
Sbjct: 149 KNKITAFLSITRGCDNMCTFCIVPFTRGREISRDPYSIIKECKTLYKKGFKEVTLLGQNV 208
Query: 67 NDTEVVW 73
+ VW
Sbjct: 209 DS--YVW 213
>gi|229890666|sp|Q5LLM0.2|MIAB_SILPO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 439
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A T
Sbjct: 66 RFKGLKAAKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKTR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + A++ ++ + + PKA
Sbjct: 121 AGEKALDTDFPEEDKFEKLKGRPKA 145
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREANELVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPRE-ADVILVM--TCA 99
++W + K G ++ +HP + AD ++ TCA
Sbjct: 210 GAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPNDMADDLIEAHGTCA 257
>gi|320107085|ref|YP_004182675.1| MiaB family RNA modification protein [Terriglobus saanensis SP1PR4]
gi|319925606|gb|ADV82681.1| RNA modification enzyme, MiaB family [Terriglobus saanensis SP1PR4]
Length = 452
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E FGCQMN +D+E V L+ GY++V A +IL TC+IR+ AE KV+ RL Y
Sbjct: 19 YIETFGCQMNAHDSEKVIGTLEHEGYTRVEDEEAAGLILYNTCSIRDKAEQKVFHRLNEY 78
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
+ M+ K K V+GC+A++ + + EK + LV+G SY++LP +L +
Sbjct: 79 KKMQGEGK-------KFAVIGCVAQQEGEKIFEKAPYVSLVSGSASYRNLPEMLVRLEAG 131
Query: 176 QTAINVL--LSLDETY 189
+ I L DET+
Sbjct: 132 ENRITGLDDRQTDETF 147
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 16/101 (15%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
+++I+ GCD C+YC+VP+TRG+ERSR S+L E R ++D Y ++ NVN
Sbjct: 160 GYITIIEGCDKFCSYCVVPYTRGKERSRTSDSVLAEARRMADMGYTDIQLLGQNVNSYRD 219
Query: 69 -------TEVVWSILKSSGYSKV----NHPRE--ADVILVM 96
EV+ +I + +G +V +HPR+ D+I V+
Sbjct: 220 SSGKRTFAEVLGAIGQMAGVRRVRFTTSHPRDFTQDIIDVI 260
>gi|399155933|ref|ZP_10756000.1| (dimethylallyl)adenosine tRNA methylthiotransferase [SAR324 cluster
bacterium SCGC AAA001-C10]
Length = 454
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMN DTE ++ +LK Y + + +AD+I++ TC+IRE AE KV+ L
Sbjct: 13 KVFIQTYGCQMNEYDTEKMFEVLKHQNYFQTDSREDADLIILNTCSIREKAENKVFSELG 72
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K + + LKIGV GC+A++ K +L +E ++D V G D+ +LP +L
Sbjct: 73 RLRKLKSVKPE-----LKIGVGGCVAQQEGKEILRREASVDFVFGTDNLFELPEMLKKVS 127
Query: 174 SNQTAI 179
Q I
Sbjct: 128 RGQEII 133
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A ++I +GC+N C++C+VPFTRG E SR ++IL E + L+ E+ NVN
Sbjct: 160 IKAHLAITKGCNNHCSFCVVPFTRGIEVSREPENILAEAQRLTSAGTREICLLGQNVN 217
>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
Length = 509
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ H L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKRRHPD-----LLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|182678041|ref|YP_001832187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Beijerinckia
indica subsp. indica ATCC 9039]
gi|229890430|sp|B2IIK5.1|MIAB_BEII9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|182633924|gb|ACB94698.1| RNA modification enzyme, MiaB family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 510
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D E + +L GY++ + P +AD++++ TC IRE+A KV+ L
Sbjct: 35 KLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLVILNTCHIREHAAEKVFSELG 94
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K ++ P+KI V GC+A+ + +L +++A+DLV GP SY LP LL
Sbjct: 95 KLRLLK-AEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVDLVVGPQSYHRLPDLL 149
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E V AFV++ GCD C++C+VP+TRG E SRP+++IL EV L EV
Sbjct: 179 KIAERGVGAFVTVQEGCDKFCSFCVVPYTRGAETSRPVEAILAEVETLIASGVREVTLIG 238
Query: 64 MNVN 67
NVN
Sbjct: 239 QNVN 242
>gi|378550835|ref|ZP_09826051.1| hypothetical protein CCH26_12139 [Citricoccus sp. CH26A]
Length = 503
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 53 DKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
D+ Y FGCQMNV+D+E + +L+S+GY+ + E D+++ TCA+RENA+ +++
Sbjct: 10 DRTYQVRTFGCQMNVHDSERISGLLESAGYAPADETTEPDLVVFNTCAVRENADNRLYGN 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L RS+K H ++I V GC+A++ + ++LEK +D+V G + LP LL
Sbjct: 70 LGNLRSVKDNHPG-----MQIAVGGCLAQKDQNTILEKAPWVDVVFGTHNIGSLPVLLER 124
Query: 172 TYSNQTA-INVLLSLDETYADITPKAVST 199
+ NQ A + +L SL+ + + K ST
Sbjct: 125 SRHNQQAELEILESLEAFPSTLPTKRDST 153
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ + S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NV
Sbjct: 151 DSTYSGWVSISVGCNNTCTFCIVPALRGKEKDRRPGEILAEVQALVDAGAVEVTLLGQNV 210
Query: 67 N 67
N
Sbjct: 211 N 211
>gi|395764535|ref|ZP_10445161.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella sp. DB5-6]
gi|395414362|gb|EJF80805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella sp. DB5-6]
Length = 458
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
D++ KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A
Sbjct: 8 DKLPVAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYITTQTPDDADLILVNTCHIREKAA 67
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
K++ L R ++Q + PL +GV GC+A+ +L + +DL+ GP Y L
Sbjct: 68 EKLYSDLGRLRVIRQERAPDK--PLMVGVTGCVAQAEGSEILRRAPTVDLIIGPQMYHRL 125
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITP 194
P LL + I ++++ +A + P
Sbjct: 126 PDLLEKAKQGKKVIETDYAVEDKFAHLPP 154
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SRP++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRPVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSAHGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDESLI 267
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I DE R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 113 RGKEEVQYVKDFTIPDEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 172
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + +
Sbjct: 173 DANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEEAVVNKI 227
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 228 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKV 277
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 276 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 335
Query: 64 MNVN 67
NVN
Sbjct: 336 QNVN 339
>gi|167643994|ref|YP_001681657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter
sp. K31]
gi|229890472|sp|B0T155.1|MIAB_CAUSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|167346424|gb|ABZ69159.1| RNA modification enzyme, MiaB family [Caulobacter sp. K31]
Length = 450
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y + +GCQMNV D+E + +L+ GY V+ P AD++++ TC IRE A KV+ L
Sbjct: 8 RLYIKTYGCQMNVYDSERMADVLRPLGYGIVDEPEGADLVVLNTCHIREKATEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + MK K + + V GC+A+ + ++ ++ A+DLV GP +Y LP L+A +
Sbjct: 68 YIKQMKG-RKAEAGGQMTVAVAGCVAQAEGQEIMRRQPAVDLVVGPQAYHQLPELIARAH 126
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
VSAF+++ GCD CT+C+VP+TRG E SRP + I DE R L+D+ EV NVN
Sbjct: 154 GVSAFLTVQEGCDKFCTFCVVPYTRGGEWSRPPEQIEDEARRLADQGVREVTLLGQNVNA 213
Query: 69 --------TEVVWSILKSSGYSKV----NHPRE 89
+V + K G ++ +HPR+
Sbjct: 214 YDGGGYTLARLVRRLAKIPGLDRIRYTTSHPRD 246
>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
Length = 509
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|87310113|ref|ZP_01092245.1| probable MiaB protein-putative tRNA-thiotransferase
[Blastopirellula marina DSM 3645]
gi|87287103|gb|EAQ79005.1| probable MiaB protein-putative tRNA-thiotransferase
[Blastopirellula marina DSM 3645]
Length = 475
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ ++Y + GCQMN+ D+E+V + L+ GY P EAD +L TC++RE AE K +
Sbjct: 1 MPKRLYIDTVGCQMNMLDSELVVASLRQQGYELTTKPEEADTLLFNTCSVREQAENKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLK-IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K H P K IGV+GCMA+ +K + ++ +DLV GP +P L+
Sbjct: 61 HLGVLRDLKASH------PEKIIGVMGCMAQNHQKKIFQRAPYVDLVVGPGQLHQIPSLI 114
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 2 DVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFG 61
D + A+V I GCD CTYCIVP RG E+ R + IL E R L+D+ E+
Sbjct: 151 DPEMRPTPFQAYVRIQIGCDKFCTYCIVPSVRGPEQGRRPEDILAETRHLADQGTVEITL 210
Query: 62 CQMNVN 67
VN
Sbjct: 211 VGQTVN 216
>gi|154254048|ref|YP_001414872.1| RNA modification protein [Parvibaculum lavamentivorans DS-1]
gi|229890586|sp|A7HZ82.1|MIAB_PARL1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154157998|gb|ABS65215.1| RNA modification enzyme, MiaB family [Parvibaculum lavamentivorans
DS-1]
Length = 467
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+ + ++ SGY++V+ P +AD++++ TC IRE A KV+ L
Sbjct: 16 KIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTCHIREKAAEKVYSELG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LT 172
R +K+ K R L IGV GC+A+ + + + +DLV GP +Y LP +A L
Sbjct: 76 RLRELKK-EKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGPQTYHRLPEYVARLA 134
Query: 173 YSNQTAINVLLSLDETYADI 192
+ +D+ +A +
Sbjct: 135 NGGPGIVETEFPVDDKFASL 154
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
+AF++I GCD CT+C+VP+TRG E SRP+ ILDE R+L D E+ NVN
Sbjct: 166 GATAFLTIQEGCDKFCTFCVVPYTRGSEFSRPVARILDEARSLVDAGVREITLLGQNVN- 224
Query: 69 TEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM-----KQIHK 123
W G + P + IR AE + RLR+ S +++
Sbjct: 225 ---AW-----HGEDQAGRP------ATLGYLIRALAEIEGLARLRYTTSHPRDMDEELIA 270
Query: 124 KHRTFP 129
HR P
Sbjct: 271 AHRDVP 276
>gi|310815234|ref|YP_003963198.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Ketogulonicigenium vulgare Y25]
gi|385232776|ref|YP_005794118.1| 2-methylthioadenine synthetase (MiaB-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
gi|308753969|gb|ADO41898.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Ketogulonicigenium vulgare Y25]
gi|343461687|gb|AEM40122.1| 2-methylthioadenine synthetase (MiaB-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
Length = 440
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K++ + +GCQMNV D+E + L + GY ++ EAD++L+ TC IRE A KV+
Sbjct: 8 TKKLFIKTYGCQMNVYDSERMAETLGAQGYVTTDNAEEADMVLLNTCHIREKAAEKVYSD 67
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L + +K+ + + LKIGV GC+A+ ++ + +DLV GP SY +LP + A
Sbjct: 68 LGRLKPLKEANPQ-----LKIGVAGCVAQAEGAEIMRRMPLVDLVVGPQSYHNLPAMEAR 122
Query: 172 TYSNQTAINVLLSLDE 187
S + A++ +D+
Sbjct: 123 VQSGRRAVDTDFEVDK 138
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP I+ E + L + E+ NVN
Sbjct: 153 TAFLTVQEGCDKFCAFCVVPYTRGSEVSRPADKIIAEAQGLVEAGVREITLLGQNVN 209
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I DE R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVQYVKDFTIPDEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + +
Sbjct: 116 DANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEEAVVNKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPK 219
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVN 67
NVN
Sbjct: 279 QNVN 282
>gi|304393798|ref|ZP_07375723.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
gi|303293997|gb|EFL88372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130]
Length = 477
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E +A + KV+ + +GCQMNV D+ + L++ GY+ +AD++L+ TC IRE A
Sbjct: 9 EPQAPTKKVFIKTWGCQMNVYDSTRMSDALEADGYAPTTTMEDADLVLLNTCHIREKAAE 68
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
KV+ L R +K+ + PL IGV GC+A+ + ++ +E+A+DLV GP +Y LP
Sbjct: 69 KVYSNLGRIRQLKET-RAGTDRPLTIGVTGCVAQAEGQEIIRRERAVDLVVGPQTYHRLP 127
Query: 167 RLLALTYSN 175
++ + S
Sbjct: 128 EIVTRSKSG 136
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDT 69
V+AF+++ GCD CT+C+VP+TRG E SRP+ ILDE RAL D E+ NVN
Sbjct: 165 VTAFLTVQEGCDKFCTFCVVPYTRGAEVSRPLAQILDEARALIDAGVREITLLGQNVN-- 222
Query: 70 EVVWSILKSSG 80
W + +G
Sbjct: 223 --AWHGVDGTG 231
>gi|429769466|ref|ZP_19301575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas diminuta
470-4]
gi|429186987|gb|EKY27910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas diminuta
470-4]
Length = 467
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E A +++ + +GCQMNV D+E + +L+ GY+ + P AD +++ TC IRE A
Sbjct: 17 EGGAAPKRLFIKTYGCQMNVYDSERMADVLRPLGYAPTDTPEGADFVILNTCHIREKAAE 76
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
KV+ L R MK + I V GC+A+ + +++++ A+DLV GP +Y LP
Sbjct: 77 KVYSELGKLRQMKDEKAAAGQGGMTIAVAGCVAQAEGEEIMKRQPAVDLVVGPQAYHQLP 136
Query: 167 RLLALT 172
LL T
Sbjct: 137 ELLTRT 142
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ V+AF+++ GCD CT+C+VP+TRG E SRP+ ++L+E AL+D+ EV NVN
Sbjct: 170 EGVTAFLTVQEGCDKFCTFCVVPYTRGAEWSRPVGAVLNEAWALADRGVREVTLLGQNVN 229
>gi|395767076|ref|ZP_10447613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella doshiae NCTC 12862]
gi|395414835|gb|EJF81272.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella doshiae NCTC 12862]
Length = 459
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 17 KVFIKTYGCQMNVYDSQRMTDSLNSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 77 RLRVMRQERAPDK--PLMIGVTGCVAQAEGNEILRRAPTVDLVIGPQMYHRLPDLLEQAK 134
Query: 174 SNQTAINVLLSLDETYADI 192
+ + ++++ +A +
Sbjct: 135 QGKKIVETDYAVEDKFAHL 153
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 166 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVN 223
>gi|393907785|gb|EJD74780.1| tRNA-I(6)A37 thiotransferase enzyme MiaB, variant [Loa loa]
Length = 415
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR ++ S +AFVSIMRGCDNMCTYC+VP+TRGRERSRP+ SILDE+R+LSD+ +V
Sbjct: 58 VRKDKFSKTAFVSIMRGCDNMCTYCVVPYTRGRERSRPINSILDEIRSLSDEGVKQVTLL 117
Query: 63 QMNVN 67
NVN
Sbjct: 118 GQNVN 122
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 138 MAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
MAER++ +LL + +D+VAGPDSY+DLPRLLA+ AINV LSL+ETYADI P
Sbjct: 1 MAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIARCGSMAINVQLSLEETYADIVP 57
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
Length = 509
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREITLLGQNVN 268
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + FGCQMN ND+E + IL GY + P EAD+IL+ TC IRE + KV+ L
Sbjct: 2 KYYIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K+ + + IGV GC+A+R+ L+EK +DL+ + LP L+
Sbjct: 62 EYKKIKEKRPE-----VIIGVCGCLAQRMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQ 116
Query: 174 SNQTAINVL 182
+ AI +L
Sbjct: 117 AGYRAIAIL 125
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 13/100 (13%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV----- 59
+ +++ A+V++M+GCD CTYC+VP TRGR+RSR ++SIL+EVR L E+
Sbjct: 141 VRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESILEEVRWLVADGVKEIHLLGQ 200
Query: 60 ----FGCQMNVNDTEVVWSILKSSGYSKV----NHPREAD 91
+G +N++ +E+++ + + G ++ HP + D
Sbjct: 201 NVTAWGQDINIHFSELLYRVAEIPGVERIRFTTGHPSDMD 240
>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
Length = 560
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 118 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 177
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 178 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 232
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 233 AMFSKETVVEV 243
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 262 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 319
>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREITLLGQNVN 268
>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREITLLGQNVN 268
>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
Length = 510
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|42523558|ref|NP_968938.1| hypothetical protein Bd2086 [Bdellovibrio bacteriovorus HD100]
gi|81617194|sp|Q6MLC6.1|MIAB_BDEBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|39575764|emb|CAE79931.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 453
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY +GCQMNVNDTE ++++L+ + V P++A +I++ +C++RE KV+ +
Sbjct: 23 VYISTYGCQMNVNDTERMYALLEMQNFVPVTDPKKASLIIINSCSVREKPVHKVYSEVGT 82
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y+ MK+ + + LKIGV GC+ ++ K++L++ + +D V G D LP+L+A +++
Sbjct: 83 YKYMKRKNPE-----LKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAKSFA 137
Query: 175 NQ 176
+
Sbjct: 138 GE 139
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
V+ +V+I +GCDN CT+C+VP+TRGRE+SRP+Q IL ++R L + EV NVN
Sbjct: 164 VATYVNITKGCDNFCTFCVVPYTRGREKSRPVQHILTDIRHLVKRGVKEVTLLGQNVNSY 223
Query: 69 --------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
+++ + K + ++ +HP++ + LV A N
Sbjct: 224 QGDEGIDFADLLAKVAKETDVERIRYTTSHPKDFNQKLVDVMAEHSN 270
>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
weihenstephanensis KBAB4]
gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
weihenstephanensis KBAB4]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
Length = 509
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|390957754|ref|YP_006421511.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Terriglobus roseus DSM 18391]
gi|390412672|gb|AFL88176.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Terriglobus roseus DSM 18391]
Length = 444
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A + Y E FGCQMN +D+E V L+ GY +V A++IL TC+IR+ AE KV+
Sbjct: 3 AAAKTFYMETFGCQMNAHDSEKVIGTLEHEGYVRVQDEEAAELILYNTCSIRDKAEQKVF 62
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL Y+ M+ K + VLGC+A++ + + EK + LV+G SY++LP +L
Sbjct: 63 HRLNEYKRMQGEGK-------QFAVLGCVAQQEGEKIFEKAPFVSLVSGSASYRNLPEML 115
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
+++I+ GCD C+YC+VP+TRG+ERSR SI+ E + ++ Y ++ NVN
Sbjct: 151 GYITIIEGCDKFCSYCVVPYTRGKERSRASDSIMAEAQRMASLGYTDIQLLGQNVNSYRD 210
Query: 69 -------TEVVWSILKSSGYSKV----NHPRE--ADVILVM 96
+V+ SI G +V +HPR+ D+I V+
Sbjct: 211 PLGQRTFAQVLESIGVLHGVRRVRFTTSHPRDFTPDIIEVI 251
>gi|163747528|ref|ZP_02154878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
HEL-45]
gi|161379206|gb|EDQ03625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex
HEL-45]
Length = 434
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAESLGGQGYVTTDKADDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K LKIGV GC+A+ ++ ++ A+DLV GP SY LP + A
Sbjct: 66 RLKPLKDARPD-----LKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPEMEAKVR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
S Q+A++ ++ + + PKA
Sbjct: 121 SGQSALDTDFPAEDKFDHLKSRPKA 145
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP + +L+E R L ++ EV NVN
Sbjct: 150 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPAEKVLEEARDLVERGVREVTLLGQNVNAYH 209
Query: 69 -----TEVVWSILKSSGYSKV----NHPRE 89
+++ ++ K G ++ +HP +
Sbjct: 210 GGMTLADLIRALAKVDGLERIRYTTSHPND 239
>gi|195953226|ref|YP_002121516.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Hydrogenobaculum sp. Y04AAS1]
gi|229890609|sp|B4U8S7.1|MIAB_HYDS0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195932838|gb|ACG57538.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1]
Length = 435
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + + +GCQMN+ND+E + IL++ GY +AD++++ TC IRE + KVW L
Sbjct: 2 KYFIKTYGCQMNINDSEKIKGILQTQGYEPATREEDADLVILNTCTIREKPDQKVWSHLG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K I+ +KIGV GCMA+R + K +DLV G + +P+LL
Sbjct: 62 EIKKLKSINPN-----IKIGVCGCMAQRAGYEIASKMPFIDLVFGTKNIHHMPKLLEDVK 116
Query: 174 SNQTAINVLLSLD 186
AI +L D
Sbjct: 117 VGNRAIEILEEED 129
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
++S A+V+IMRGCD CTYC+VPFTRG+ERSR QSILDEV++L D E+ NV
Sbjct: 143 DNSYCAYVTIMRGCDKECTYCVVPFTRGKERSRNPQSILDEVKSLVDSGVMEIHLIGQNV 202
>gi|395783564|ref|ZP_10463413.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella melophagi K-2C]
gi|395425686|gb|EJF91846.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella melophagi K-2C]
Length = 458
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMN D++ + L + GY P +AD+ILV TC IRE A K++
Sbjct: 14 SQKVFIKTYGCQMNTYDSQRMSDSLSAEGYVTTQTPNDADLILVNTCHIREKAAEKLYSD 73
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R ++Q K+ PL IGV GC+A+ +L + +DL+ GP Y LP LL
Sbjct: 74 LGRLRMIRQ--KRASDKPLIIGVTGCVAQAEGDEILRRAPTVDLIVGPQMYHRLPELLKQ 131
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
+ + ++++ + + P +R +
Sbjct: 132 AKQGKKIVETNYAVEDKFTHLPPHNKHAVQKRGV 165
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF++I GCD CT+C+VP+TRG E SRP++ I E L + E+ NVN
Sbjct: 165 VSAFLTIQEGCDKFCTFCVVPYTRGAETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|32475869|ref|NP_868863.1| MiaB protein- tRNA-thiotransferase [Rhodopirellula baltica SH 1]
gi|81659862|sp|Q7ULM9.1|MIAB_RHOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|32446412|emb|CAD76240.1| probable MiaB protein-putative tRNA-thiotransferase [Rhodopirellula
baltica SH 1]
Length = 479
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+++ VY + GCQMNV D+E+V + LK GY+ V+ P EAD++L TC+IRE AE K +
Sbjct: 3 SMTKTVYIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTY 62
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L + K H + IGV+GCMA++ ++++ + +D+V GP +P +L
Sbjct: 63 SALGKLKETKARHPEK-----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDML 117
Query: 170 ALTYSNQ 176
S +
Sbjct: 118 TKVTSGE 124
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A++ I GCD CTYC+VP TRG E+ R + I+ E R L+++ E+ VN
Sbjct: 164 AYLRIQIGCDKFCTYCVVPNTRGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVN 219
>gi|417303523|ref|ZP_12090576.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
WH47]
gi|327540187|gb|EGF26778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
WH47]
Length = 479
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+++ VY + GCQMNV D+E+V + LK GY+ V+ P EAD++L TC+IRE AE K +
Sbjct: 3 SMTKTVYIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTY 62
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L + K H + IGV+GCMA++ ++++ + +D+V GP +P +L
Sbjct: 63 SALGKLKETKARHPEK-----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDML 117
Query: 170 ALTYSNQ 176
S +
Sbjct: 118 TKVTSGE 124
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A++ I GCD CTYC+VP TRG E+ R + I+ E R L+++ E+ VN
Sbjct: 164 AYLRIQIGCDKFCTYCVVPNTRGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVN 219
>gi|406981912|gb|EKE03298.1| hypothetical protein ACD_20C00223G0005 [uncultured bacterium]
Length = 440
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S KVY E GCQMN +DTE ++ IL GY K+ AD++++ TC+IR AE K +
Sbjct: 1 MSKKVYIETLGCQMNKSDTERIFGILGDIGYEKIEEAENADLLIINTCSIRAAAENKAYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + K+ + LKI + GC+A+ K+SL K +DL+ G + +LP LL+
Sbjct: 61 YLGVWGKWKKSKPE-----LKIAMCGCVAQHTKESLFNKAPYIDLIFGTHNIAELPELLS 115
Query: 171 LTYSNQTAINVLLSLDETYADIT 193
S + +VL + E+ + +
Sbjct: 116 KLDSQEKVYSVLQTPYESNGEFS 138
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ E +SA++ I+ GCD CTYCIVP+TRGR+RSR + I+ E R ++++ Y E+
Sbjct: 140 IREKGISAWLPIIEGCDYFCTYCIVPYTRGRQRSRKPEDIIKEARDIANEGYKEII 195
>gi|50955210|ref|YP_062498.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|81390772|sp|Q6AE03.1|MIAB_LEIXX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|50951692|gb|AAT89393.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 535
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + L+++GY N EAD++++ TCA+RENA+ K++ L S+
Sbjct: 30 TFGCQMNVHDSERLSGSLEAAGYVPANG-EEADIVVINTCAVRENADNKLYGNLGHLASV 88
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H ++I V GC+A++ K +LEK +D+V G + LPRLL N A
Sbjct: 89 KRRHAG-----MQIAVGGCLAQKDKNVILEKAPWVDVVFGTHNMGALPRLLERARHNDAA 143
Query: 179 INVLLSLDETYADITP 194
+L ET+ P
Sbjct: 144 EIEILEALETFPSTLP 159
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ S S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 163 DSSFSGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVQALVDEGAVEVTLLGQNV 222
Query: 67 N-------DTEVVWSILKSSG 80
N D + +L+++G
Sbjct: 223 NSYGVEFGDRQAFSKLLRAAG 243
>gi|255263805|ref|ZP_05343147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
gi|255106140|gb|EET48814.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62]
Length = 436
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A K++ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETKTPDDADMILLNTCHIREKAAEKIYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
YR K LKIGV GC+A+ + ++ ++ +DLV GP SY LP +
Sbjct: 66 RYRGFKDAKPD-----LKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPEMEDAVS 120
Query: 174 SNQTAINVLLSLDETYADIT--PKAV 197
+ A++ ++ + + PKA
Sbjct: 121 RGEKALDTDFPEEDKFEHLKSRPKAA 146
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
+AF+++ GCD C +C+VP+TRG E SRP I+ E + L ++ E+ NVN
Sbjct: 148 GATAFLTVQEGCDKFCAFCVVPYTRGAELSRPADRIIREAQDLVERGVREITLLGQNVNA 207
Query: 69 TE--------VVWSILKSSGYSKV----NHPREADVILV 95
++W + K G ++ +HP + D L+
Sbjct: 208 YHGHEGGLAGLIWDLDKVDGLKRIRFTTSHPNDMDQALI 246
>gi|99080026|ref|YP_612180.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria sp.
TM1040]
gi|123077818|sp|Q1GK98.1|MIAB_SILST RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|99036306|gb|ABF62918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
Length = 440
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMAETLGGQGYVETQTPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKAG 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + ++ ++ + + PKA
Sbjct: 121 TGEKVLDTDFPEEDKFEKLKRRPKA 145
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP+ +L E L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVDRVLREAEDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPRE 89
+++W + K G ++ +HP +
Sbjct: 210 GAGPNGDMTLAQLIWELDKIDGLERIRFTTSHPND 244
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 87/156 (55%), Gaps = 13/156 (8%)
Query: 33 RGRERSRPMQSILDE-VRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
RG+E Q +DE + L + K Y +GCQMN +DTEV+ I + GY N +
Sbjct: 42 RGKEEVEYNQFQIDERFQGLGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTED 101
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSL 146
A+VIL+ TCAIRENAE KV+ L +++K R P L +GV GCM+ E + K +
Sbjct: 102 ANVILLNTCAIRENAENKVFGELGHLKALK------REKPDLILGVCGCMSQEESVVKRI 155
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINV 181
L+K +DL+ G + LP LL+ Y S + I V
Sbjct: 156 LKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEV 191
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + + +V+IM GCD CTYCIVP+TRG+ERSR I+ EVR L+ + Y E+
Sbjct: 204 RARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKEITLLG 263
Query: 64 MNVN 67
NVN
Sbjct: 264 QNVN 267
>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
mobilis SJ95]
gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
Length = 439
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN+N++E++ +LK G+ +P+EAD+IL+ +CA+RE AE K++ +
Sbjct: 2 KFYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y +K +K L +GV GC AE+ +++LLE+ + +D V G + D+ L+
Sbjct: 62 GYGKLKDENKN-----LILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRAL 116
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ + + L++ DI +S
Sbjct: 117 NGKRFADFSDKLNDVNYDIPKMPIS 141
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+++I+ GC+ C+YCIVP+TRG E+SRPM+ I+ EV + + K Y E+ NV+
Sbjct: 145 AWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVESYAKKGYKEITFLGQNVD 200
>gi|339502082|ref|YP_004689502.1| MiaB family RNA modification protein [Roseobacter litoralis Och
149]
gi|338756075|gb|AEI92539.1| RNA modification enzyme, MiaB family [Roseobacter litoralis Och
149]
Length = 441
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+S+K + LKIGV GC+A+ + ++ ++ A+DLV GP SY LP++ A
Sbjct: 66 RLKSLKADNPD-----LKIGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEARLR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
A++ ++ + ++ PKA
Sbjct: 121 EGHKALDTDFPPEDKFEELKARPKA 145
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VP+TRG E SRP+ +LDE R L ++ E+ NVN
Sbjct: 150 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVTRVLDEARDLVERGVREITLLGQNVN 206
>gi|349605411|gb|AEQ00659.1| CDK5 regulatory subunit-associated protein 1-like protein, partial
[Equus caballus]
Length = 399
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SI++EVR LS++ EV
Sbjct: 51 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASIVEEVRKLSEQGLKEVT 110
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 111 LLGQNVNSFRDNSEVQFNNAMSTSLSR 137
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 143 KKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
K+ +L +E+ +D++AGPD+Y+DLPRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 1 KEEILNREKIVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADIMPVQTS 56
>gi|404316811|ref|ZP_10964744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi CTS-325]
Length = 462
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K++ L
Sbjct: 19 KVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSALG 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK + + L IGV GC+A+ + +L + +DLV GP +Y LP LA
Sbjct: 79 RLRKMKDAREANGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
S + + +L++ + + +PK T R
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPKREETRKR 167
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 169 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 228
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 229 HGAGDDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 271
>gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi ATCC 49188]
gi|229890580|sp|A6WWX6.1|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC
49188]
Length = 462
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K++ L
Sbjct: 19 KVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSALG 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK + + L IGV GC+A+ + +L + +DLV GP +Y LP LA
Sbjct: 79 RLRKMKDAREANGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
S + + +L++ + + +PK T R
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPKREETRKR 167
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 169 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 228
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 229 HGAGDDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 271
>gi|254417885|ref|ZP_05031609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
gi|196184062|gb|EDX79038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3]
Length = 472
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGK 107
+ A S +++ + +GCQMNV D+E + +L+ GY+ R AD +++ TC IRE A K
Sbjct: 13 LEAPSKRLFIKTYGCQMNVYDSERMADVLRPLGYAVTEDVRAADFVILNTCHIREKAAEK 72
Query: 108 VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167
++ L R ++ I K+ L I V GC+A+ + +++++ A+D+V GP +Y LP
Sbjct: 73 IYSELGKLRELRDI-KRETGGDLTIAVAGCVAQAEGEEIMKRQPAVDIVVGPQAYHQLPE 131
Query: 168 LLALTY-SNQTAINVLLSLDETYADITPKAVSTDG 201
LL T + I + D+ + D P A T+G
Sbjct: 132 LLTRTARARGERIGADFAPDDKF-DALPAARFTEG 165
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD CT+C+VP+TRG E SRP+ S+L+E RAL+ + EV NVN
Sbjct: 167 TAFLTVQEGCDKFCTFCVVPYTRGAEWSRPLASVLEEARALAGRGVREVTLLGQNVN 223
>gi|259415579|ref|ZP_05739500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
TrichCH4B]
gi|259348809|gb|EEW60571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp.
TrichCH4B]
Length = 440
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMAETLGGQGYVETKTPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKAG 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + ++ ++ + + PKA
Sbjct: 121 AGEKVLDTDFPEEDKFEKLKRRPKA 145
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAEDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREA--DVILVM-TCA 99
+++W + K G ++ +HP + D+I TCA
Sbjct: 210 GAGPNGDMTLAQLIWELDKVEGLERIRFTTSHPNDMMDDLIEAHGTCA 257
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN+ND++ + +LK+ GY +AD+ILV TC++RE + KV L
Sbjct: 3 KYYIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K +KK IGV GC+A+R +L+K +D+V G + LP+LL
Sbjct: 63 EFKKIK--NKKPDAV---IGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEAL 117
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
A+ +L +D+ ++ + R + YV
Sbjct: 118 QGNKAVEILEDIDQNETELDKYPTVRENRYTAYV 151
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
+ E+ +A+V++MRGCD CTYCIVP+TRG+ERSR + IL EV+ L D E+
Sbjct: 142 VRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQEVQWLIDDGVKEIHLIGQ 201
Query: 65 NVND----------TEVVWSILKSSGYSKV----NHPREAD 91
NV ++++++ G ++ HPR+ D
Sbjct: 202 NVTAYGKDLGDVRFVDLLYAVADVEGVERIRFTTGHPRDLD 242
>gi|440715617|ref|ZP_20896151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
SWK14]
gi|436439414|gb|ELP32868.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica
SWK14]
Length = 476
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ VY + GCQMNV D+E+V + LK GY+ V+ P EAD++L TC+IRE AE K +
Sbjct: 1 MTKTVYIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + K H + IGV+GCMA++ ++++ + +D+V GP +P +L
Sbjct: 61 ALGKLKETKARHPEK-----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLT 115
Query: 171 LTYSNQ 176
S +
Sbjct: 116 KVTSGE 121
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A++ I GCD CTYC+VP TRG E+ R + I+ E R L+++ E+ VN
Sbjct: 161 AYLRIQIGCDKFCTYCVVPNTRGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVN 216
>gi|325107255|ref|YP_004268323.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
DSM 5305]
gi|324967523|gb|ADY58301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis
DSM 5305]
Length = 497
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E GCQMNV D+E+V + L+ GY ++ ++AD IL TC++RE+AE K++ +L
Sbjct: 20 KLFIETVGCQMNVLDSELVVAALRKDGYELTDNMKKADTILFNTCSVREHAEQKIYSQLG 79
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ KQ T P L IGV+GCMA++ +K + +K +DLV G ++PRL+
Sbjct: 80 RLKYSKQ------TRPDLVIGVMGCMAQKDQKKIFQKAPQVDLVVGTGQLAEIPRLV 130
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 2 DVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFG 61
D + AFV I GCD CTYC+VP TRG E+SR IL E +AL+D+ E+
Sbjct: 167 DPEMRPSPYQAFVRITFGCDKFCTYCVVPMTRGPEQSRNPSEILKETKALADQGVQEITL 226
Query: 62 CQMNVN 67
VN
Sbjct: 227 LGQTVN 232
>gi|346991750|ref|ZP_08859822.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria sp.
TW15]
Length = 439
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETKSADDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K + LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A T
Sbjct: 66 RFKGLKAEKPE-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKTR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + A++ ++ + + PKA
Sbjct: 121 AGEKALDTDFPEEDKFEKLKNRPKA 145
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP I+ E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRIIREAQDLVERGVREITLLGQNVNAYH 209
Query: 71 ------------VVWSILKSSGYSKV----NHPREADVILV 95
++W + K G ++ +HP + D L+
Sbjct: 210 GAGPNGDMTLAGLIWELNKVDGLERIRFTTSHPNDMDDALI 250
>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
Length = 509
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYTRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
>gi|407798478|ref|ZP_11145385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceaniovalibus
guishaninsula JLT2003]
gi|407059439|gb|EKE45368.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceaniovalibus
guishaninsula JLT2003]
Length = 435
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A K + L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALAPQGYVATGNAEDADLILLNTCHIREKAAEKTYHELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K + L+IGV GC+A+ +L ++ +DLV GP SY LP L A
Sbjct: 66 RLRPLKAANPD-----LRIGVAGCVAQAEGAEILRRQPLVDLVVGPQSYHRLPELEARAR 120
Query: 174 SNQTAINVLLSLDETY 189
+ Q A++ ++ +
Sbjct: 121 AGQPALDTDFPAEDKF 136
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP +L E R L + E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPAARVLAEARDLVARGVREITLLGQNVN 206
>gi|86136015|ref|ZP_01054594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
gi|85826889|gb|EAQ47085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193]
Length = 455
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GYS+V EAD+IL+ TC IRE A KV+ L
Sbjct: 21 KLFIKTYGCQMNVYDSERMAEALGGQGYSEVKSADEADMILLNTCHIREKAAEKVYSELG 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP +
Sbjct: 81 RFKKLKAEKPD-----LKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEEKAR 135
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ + ++ ++ + + + +T G
Sbjct: 136 AGEKVLDTDFPEEDKFEKLKRRPKATRG 163
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E R L ++ E+ NVN
Sbjct: 165 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILTEARDLVERGVREITLLGQNVNAYH 224
Query: 69 ----------TEVVWSILKSSGYSKV----NHP 87
+++W + K G ++ +HP
Sbjct: 225 GAGANGDLTLAQLIWELDKVDGLERIRFTTSHP 257
>gi|319408022|emb|CBI81676.1| bifunctional enzyme [Bartonella schoenbuchensis R1]
Length = 458
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 42 QSILDEVRALS-DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
QS L ++S KV+ + +GCQMN D++ + L + GY P +AD+ILV TC I
Sbjct: 3 QSHLKNTLSISPQKVFIKTYGCQMNTYDSQRMNDSLSAEGYVTTQTPNDADLILVNTCHI 62
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RE A K++ L R ++Q K+ PL IGV GC+A+ +L + +DLV GP
Sbjct: 63 REKAAEKLYSDLGRLRMIRQ--KRAPDKPLIIGVTGCVAQAEGDEILRRAPTVDLVVGPQ 120
Query: 161 SYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
Y LP LL + + ++++ + + P +R +
Sbjct: 121 MYHRLPELLKQAKQGKKIVETNYAVEDKFTHLPPHNKHAVQKRGV 165
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF++I GCD CT+C+VP+TRG E SRP++ I E L + E+ NVN
Sbjct: 165 VSAFLTIQEGCDKFCTFCVVPYTRGAETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + SI +E R + + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 60 RGKEEVKYHKDFSIPEEFRGMGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 119
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + + +KQ + L +GV GCM+ E + +
Sbjct: 120 DANVILLNTCAIRENAENKVFGEIGHLKPLKQNNPD-----LLLGVCGCMSQEESVVNKI 174
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L++ Q +D++ G + LP +L Y ++ +
Sbjct: 175 LKQFQYVDMIFGTHNIHRLPYILKEAYMSKEMV 207
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 223 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLG 282
Query: 64 MNVN 67
NVN
Sbjct: 283 QNVN 286
>gi|84515221|ref|ZP_01002583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
SKA53]
gi|84510504|gb|EAQ06959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis
SKA53]
Length = 436
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +H +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVQTDHAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K LKIGV GC+A+ ++ ++ +DLV GP SY LP + A
Sbjct: 66 RMKVLKDAKPD-----LKIGVAGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPAMDAAVQ 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
A++ D+ + + ++ + G
Sbjct: 121 GGAKALDTDFPEDDKFKTLKTRSKAKRG 148
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP IL E R L D E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREARELVDAGVRELTLLGQNVNAYH 209
Query: 71 --------VVWSILKSSGYSKV----NHPREADVILV 95
++W++ + G ++ +HP + D L+
Sbjct: 210 GHERGLAGLIWALTEIDGLERIRFTTSHPNDMDQALI 246
>gi|322435958|ref|YP_004218170.1| MiaB family RNA modification protein [Granulicella tundricola
MP5ACTX9]
gi|321163685|gb|ADW69390.1| RNA modification enzyme, MiaB family [Granulicella tundricola
MP5ACTX9]
Length = 440
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S Y E FGCQMN +D+E V L+ GY++V EA +IL TC+IR+ AE KV+
Sbjct: 1 MSKTFYIETFGCQMNAHDSEKVVGTLEQQGYAQVQDEAEAGLILYNTCSIRDKAEQKVFH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL Y+ M+ K + V+GC+A++ + + ++ + +VAG SY++LP +L
Sbjct: 61 RLNEYKKMQGEGK-------RFAVIGCVAQQEGEKIFDRAPYVSIVAGSASYRNLPGML 112
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+++I+ GCD C YC+VP+TRG ERSR S+++E R ++D Y E+ NVN
Sbjct: 147 GYITIIEGCDKFCAYCVVPYTRGNERSRSAASVMEEARRMADSGYTEIQLLGQNVN 202
>gi|426391395|ref|XP_004062060.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 404
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 56 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 115
Query: 61 GCQMNVN 67
NVN
Sbjct: 116 LLGQNVN 122
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 138 MAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV 197
MAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 1 MAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQT 60
Query: 198 STDG 201
S
Sbjct: 61 SASA 64
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + SI +E R + + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 59 RGKEEVKYHKDFSIPEEFRGMGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 118
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + + +KQ + L +GV GCM+ E + +
Sbjct: 119 DANVILLNTCAIRENAENKVFGEIGHLKPLKQNNPD-----LLLGVCGCMSQEESVVNKI 173
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L++ Q +D++ G + LP +L Y ++ +
Sbjct: 174 LKQFQYVDMIFGTHNIHRLPYILKEAYMSKEMV 206
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 222 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLG 281
Query: 64 MNVN 67
NVN
Sbjct: 282 QNVN 285
>gi|116625754|ref|YP_827910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
usitatus Ellin6076]
gi|122252074|sp|Q01RU5.1|MIAB_SOLUE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|116228916|gb|ABJ87625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter
usitatus Ellin6076]
Length = 445
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 9/142 (6%)
Query: 50 ALSDKV-YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
A+S K Y E FGCQMN +D+E V L + GY +V P A+++ TC+IR+ AE KV
Sbjct: 3 AVSGKTFYIETFGCQMNAHDSEKVVGTLLAEGYEQVATPEAAELVFYNTCSIRDKAEQKV 62
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
++RL ++ K+ K + F GVLGC+A++ + + ++ + LVAG SY LP +
Sbjct: 63 FNRL---QNFKREGMKGKIF----GVLGCVAQQEGEKIFDRAPHVSLVAGSASYTRLPEM 115
Query: 169 LA-LTYSNQTAINVLLSLDETY 189
L L N+ + L +ET+
Sbjct: 116 LVQLEAGNRRVTGLSLDTEETF 137
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+++I+ GCD C YC+VPFTRG ERSR +S++ E R L++K Y EV NVN
Sbjct: 150 AYLTIIEGCDKACAYCVVPFTRGPERSRTSESVMAEARGLTEKGYTEVQLLGQNVN 205
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I ++ R + + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVKYVKDFTIPEQFRGMGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + + +KQ + L +GV GCM+ E + +
Sbjct: 116 DANVILLNTCAIRENAENKVFGEIGHLKPLKQNNPD-----LLLGVCGCMSQEESVVNKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +D++ G + LP +L Y ++ + + S + + PKA
Sbjct: 171 LKQYQYVDMIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVIENLPKA 220
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 224 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVN 282
>gi|395791459|ref|ZP_10470917.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella alsatica IBS 382]
gi|395408822|gb|EJF75432.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella alsatica IBS 382]
Length = 458
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY P +AD+I+V TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMNDSLSAQGYVSAQTPSDADLIIVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRMMRQERTPDK--PLMIGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPDLLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ + + P
Sbjct: 134 QGKKIIETDYAVEDKFVHLPP 154
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLVEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQNTNGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>gi|404497151|ref|YP_006721257.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
metallireducens GS-15]
gi|418067896|ref|ZP_12705225.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
gi|123756395|sp|Q39TA3.1|MIAB_GEOMG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|78194754|gb|ABB32521.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|373557986|gb|EHP84356.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
Length = 441
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y E FGCQMNV+D+E V S+L+ GYS+ EAD+I+V TC++R AE KV+ L
Sbjct: 7 LYIETFGCQMNVSDSEKVASLLRGEGYSQTPDSSEADLIIVNTCSVRAKAEHKVYSYLGR 66
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+R +K+ + L +GV GC+A++ + LL++ LDLV G + LP ++
Sbjct: 67 FRKLKRDRR------LLLGVGGCVAQQEGERLLKRVPWLDLVFGTHNLHLLPEMVRAAEQ 120
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
+ V +E D+ P+A G
Sbjct: 121 GERRAAVDFIDNEARLDLFPQADEGGG 147
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+ FV++M+GCDN C+YCIVP+ RGRE SR I+ E+R+ EV NVN
Sbjct: 147 GVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSVEIIGEIRSAVAGGVREVTLLGQNVN 205
>gi|2462120|emb|CAA72027.1| bc48b [Bacillus cereus ATCC 10987]
Length = 226
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 523
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + +I ++ R + + K Y +GCQMN +DTEV+ I GY + P
Sbjct: 56 RGKEEVKYYKDFTIPEQFRGMGNGRKFYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + + +KQ + L +GV GCM+ E + +
Sbjct: 116 DANVILLNTCAIRENAENKVFGEIGHLKQLKQDNPD-----LLLGVCGCMSQEESVVNKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +D++ G + LP +L Y ++ + + S + + PKA
Sbjct: 171 LKQYQYVDMIFGTHNIHRLPHILHEAYMSKEMVVEVWSKEGDVIENLPKA 220
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y EV NVN
Sbjct: 224 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEVTLLGQNVN 282
>gi|254474407|ref|ZP_05087793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
gi|214028650|gb|EEB69485.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11]
Length = 440
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKADKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + ++ ++ + + PKA
Sbjct: 121 TGEKVLDTDFPEEDKFEKLKNRPKA 145
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREARDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVM---TCA 99
+++W + K G ++ +HP + L+ TCA
Sbjct: 210 GAGPNGDMTLAQLIWELDKVDGLERIRFTTSHPNDMQDDLIEAHGTCA 257
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 13 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 72
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 73 HLKSLKR-----RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 127
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 128 AMFSKETVVEV 138
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 157 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 214
>gi|254467232|ref|ZP_05080643.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
Y4I]
gi|206688140|gb|EDZ48622.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium
Y4I]
Length = 440
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K + LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A T
Sbjct: 66 RFKGLKA-----QKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKTR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ Q ++ ++ + + PKA
Sbjct: 121 AGQKVLDTDFPEEDKFEKLKNRPKA 145
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAQDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVM---TCA 99
+++W + K G ++ +HP + L+ TCA
Sbjct: 210 GAGPNGDLTLAQLIWELDKIDGLERIRFTTSHPNDMQDDLIEAHGTCA 257
>gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|444312757|ref|ZP_21148333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|443483945|gb|ELT46771.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
Length = 462
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K++ L
Sbjct: 19 KVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSALG 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK + + L IGV GC+A+ + +L + +DLV GP +Y LP LA
Sbjct: 79 RLRKMKDAREANGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
S + + +L++ + + +P+ T R
Sbjct: 138 SGEKVVETEYALEDKFEHLPSPRREETRKR 167
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 169 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 228
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 229 HGAGDDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 271
>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
Length = 509
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY ++ADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+ +KQ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKPLKQ-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S T + V
Sbjct: 182 AMFSKATVVEV 192
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I++E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIINEIRHLAANGYKEITLLGQNVN 268
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 82 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 141
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 142 HLKSLKR-----RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 197 AMFSKETVVEV 207
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 226 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 283
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|110681057|ref|YP_684064.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseobacter
denitrificans OCh 114]
gi|123361551|sp|Q161G5.1|MIAB_ROSDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|109457173|gb|ABG33378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter
denitrificans OCh 114]
Length = 441
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+S+K + LK+GV GC+A+ + ++ ++ A+DLV GP SY LP++ A
Sbjct: 66 RLKSLKADNPD-----LKLGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEARLR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
A++ ++ + ++ PKA
Sbjct: 121 EGHKALDTDFPPEDKFEELKARPKA 145
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VP+TRG E SRP+ +LDE R L ++ E+ NVN
Sbjct: 150 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVTRVLDEARDLVERGVREITLLGQNVN 206
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|39997296|ref|NP_953247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
sulfurreducens PCA]
gi|409912640|ref|YP_006891105.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Geobacter sulfurreducens KN400]
gi|81701892|sp|Q74B44.1|MIAB_GEOSL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|39984186|gb|AAR35574.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Geobacter sulfurreducens PCA]
gi|298506234|gb|ADI84957.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Geobacter sulfurreducens KN400]
Length = 446
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL-R 113
+Y E FGCQMNVND+E + ++LK GY + P AD++++ TC++R AE KV+ L R
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F K + + + F L +G GC+A++ + LL+K LDLV G + LP ++
Sbjct: 67 F----KGVRSRKKGFLLGVG--GCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ V +ET D+ P+ G
Sbjct: 121 RGERRAEVGFIDNETRLDLFPETGGEGG 148
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65
E V+ FV++M+GCDN C+YCIVP+ RGRE SR I+DEVR + EV N
Sbjct: 145 GEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDIIDEVRKSVAEGVKEVTLLGQN 204
Query: 66 VNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKH 125
VN LK+ G L IR AE + +R+RF S H K
Sbjct: 205 VNSYG-----LKTEGE------------LSFAGLIRRIAEVEGLERIRFTTS----HPKD 243
Query: 126 RTFPLKIGVLGCMAE 140
+ L + C AE
Sbjct: 244 ISPEL----IACFAE 254
>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 515
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 82 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 141
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 142 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 197 AMFSKETVVEV 207
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 226 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 283
>gi|114799640|ref|YP_758837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hyphomonas
neptunium ATCC 15444]
gi|122942826|sp|Q0C606.1|MIAB_HYPNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|114739814|gb|ABI77939.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC
15444]
Length = 449
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
++ +GCQMNV D+E + +L+ GY+ V P AD+++V TC IRE A KV+ L
Sbjct: 4 LFIRTYGCQMNVYDSERIRDVLRPLGYAPVETPESADLVVVNTCHIREKATEKVYSELGQ 63
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+ MK+ T I V GC+A+ + L+ ++ A+DLV GP +Y LP ++A
Sbjct: 64 LKRMKEASGGRMT----IAVAGCVAQAEGEELIRRQPAVDLVLGPQAYHKLPEMIA 115
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D +AFVS+ GCD CT+C+VP+TRG E SR + I+ E R+L+ + E+ NVN
Sbjct: 145 DGPAAFVSVQEGCDKFCTFCVVPYTRGAEMSRRVDDIVFETRSLASQGVREITLLGQNVN 204
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|126735009|ref|ZP_01750755.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
gi|126715564|gb|EBA12429.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2]
Length = 435
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMAEALGGKGYVETQTPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K + LKIGV GC+A+ + +++++ +DLV GP SY LP +
Sbjct: 66 RFKRLKAENPD-----LKIGVAGCVAQAEGEEIIKRQPMVDLVVGPQSYHRLPAMDDAIQ 120
Query: 174 SNQTAINVLLSLDETY 189
+ A++ D+ +
Sbjct: 121 TGAKALDTDFPDDDKF 136
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP I+ E + L + E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRIIREAQELVESGVKEITLLGQNVNAYH 209
Query: 71 --------VVWSILKSSGYSKV----NHPREADVILV 95
++W++ K G ++ +HP + D L+
Sbjct: 210 GHAGGLAGLIWALDKVDGLERIRFTTSHPNDMDDALI 246
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|88855436|ref|ZP_01130100.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
gi|88815343|gb|EAR25201.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1]
Length = 514
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
M+ ++DE A +GCQMNV+D+E + L+++GY + +ADV+++ TCA+
Sbjct: 1 MEDMIDEKLATPRSYEVRTYGCQMNVHDSERLSGSLEAAGYIRATK-GQADVVVINTCAV 59
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RENA+ K++ L S+K+ H+ ++I V GC+A++ K +LEK +D+V G
Sbjct: 60 RENADNKLYGNLGMLASVKREHEG-----MQIAVGGCLAQKDKNVILEKAPWVDVVFGTH 114
Query: 161 SYKDLPRLLALTYSNQTA-INVLLSLD 186
+ LP LL N+ A + +L SLD
Sbjct: 115 NMGSLPTLLERARHNEEAQLEILESLD 141
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + SA+VSI GC+N CT+CIVP RG+E+ R IL EV+A+ D E+ NV
Sbjct: 152 ESTHSAWVSISVGCNNTCTFCIVPALRGKEKDRRAGDILSEVQAIVDDGAIEITLLGQNV 211
Query: 67 N-------DTEVVWSILKSSG 80
N D + +L+++G
Sbjct: 212 NSYGVEFGDRQAFSKLLRATG 232
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RGRE + + + +E R K Y +GCQMN +DTEV+ I + GY
Sbjct: 42 RGREEVKIERDFGLSEEFRNFGTGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTE 101
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+ADV+L+ TCAIRENAE KV+ L +S+K+ R L IGV GCM+ E + +
Sbjct: 102 DADVVLLNTCAIRENAENKVFGELGHLKSLKR-----RNPDLLIGVCGCMSQEESVVNKI 156
Query: 147 LEKEQALDLVAGPDSYKDLPRLLA-LTYSNQTAINV 181
++K Q +D+V G + LP +L +S +T + V
Sbjct: 157 MQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|383766922|ref|YP_005445903.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phycisphaera mikurensis NBRC 102666]
gi|381387190|dbj|BAM04006.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phycisphaera mikurensis NBRC 102666]
Length = 561
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E FGCQMNV D+++V L+ GY + ADV+L TC++RE AE KVW R+
Sbjct: 11 RVYLETFGCQMNVLDSQLVTGQLRDLGYGFTDDWASADVVLFNTCSVREVAENKVWSRIG 70
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
K+ H + +GV+GCMAER + LL + ++L+ GP +P L+
Sbjct: 71 LLGQHKREHPH-----VVVGVIGCMAERDGEDLLRRHPQVNLMCGPAELDRVPALI 121
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V I RGC+ +CTYC+VP TRG E RP +I++E R L+D EV VN
Sbjct: 192 SAYVRITRGCNKLCTYCVVPHTRGEEVHRPPDAIVEECRKLADAGVLEVTLLGQTVN 248
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|379023323|ref|YP_005299984.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
canadensis str. CA410]
gi|376324261|gb|AFB21502.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
canadensis str. CA410]
Length = 446
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + +EADVI++ TC IRE A K++
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYESTENIKEADVIILNTCHIREKAAEKIYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KKH I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDTRKKHGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDG 201
++ + L ++E D P+ + G
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLPEQLYPQG 151
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L SAF+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASAFISVQEGCDKFCTFCVVPYTRGVEFSRNVEQVYREALKVVSSGAREIMLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|157804180|ref|YP_001492729.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
gi|229890632|sp|A8F011.1|MIAB_RICCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157785443|gb|ABV73944.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel]
Length = 446
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + +EADVI++ TC IRE A K++
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYESTENIKEADVIILNTCHIREKAAEKIYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KKH I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDTRKKHGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDG 201
++ + L ++E D P+ + G
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLPEQLYPQG 151
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L SAF+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASAFISVQEGCDKFCTFCVVPYTRGVEFSRNVEQVYREALKVVSNGAREIMLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|315497214|ref|YP_004086018.1| MiaB family RNA modification protein [Asticcacaulis excentricus CB
48]
gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
48]
Length = 470
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 31 FTRGRERSRPMQSILDE-VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
F + R +P + + E A S K++ + +GCQMNV D+E + +L+ GY+ +
Sbjct: 2 FGLEKGRLKPHKHRMSETASAASKKLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQAEG 61
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK 149
AD++L+ TC IRE A KV+ + + M+Q + + I V GC+A+ + ++ +
Sbjct: 62 ADLVLLNTCHIREKAAEKVYSEIGRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIMNR 121
Query: 150 EQALDLVAGPDSYKDLPRLLALT 172
A+DLV GP +Y LP L+A T
Sbjct: 122 APAVDLVVGPQAYHQLPELIART 144
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD CT+C+VP+TRG E SRP+ SIL+E R+L+ K E+ NVN
Sbjct: 175 TAFLTVQEGCDKFCTFCVVPYTRGAEWSRPVASILEEARSLASKGVREITLLGQNVN 231
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus G9842]
gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|94264310|ref|ZP_01288103.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
gi|93455276|gb|EAT05486.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
Length = 446
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S +Y E FGCQMN D+E++ +L Y + + P EAD I+V TC+IR A K +
Sbjct: 1 MSYNLYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
L Y+S+K+ H L I V GC+A++ ++LL K LDLV GP + LP L
Sbjct: 61 LLGGYKSLKERHPH-----LVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPEL 113
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 13 FVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
FV+IM+GC+N CTYC+VP TRGRE SR + I+ EVR L+ EV NVN
Sbjct: 152 FVTIMQGCNNFCTYCVVPHTRGREISRKPEDIVAEVRHLAAHGVREVTLLGQNVN 206
>gi|400753323|ref|YP_006561691.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phaeobacter gallaeciensis 2.10]
gi|398652476|gb|AFO86446.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phaeobacter gallaeciensis 2.10]
Length = 440
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ ++ ++ + + PKA
Sbjct: 121 EGEKVLDTDFPEEDKFEKLKNRPKA 145
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAQDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVM---TCA 99
+++W + K G ++ +HP + L+ TCA
Sbjct: 210 GAGPNGDKTLAQLIWELDKVDGLERIRFTTSHPNDMQDDLIEAHGTCA 257
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|94269306|ref|ZP_01291426.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
gi|93451266|gb|EAT02157.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
Length = 446
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S +Y E FGCQMN D+E++ +L Y + + P EAD I+V TC+IR A K +
Sbjct: 1 MSYNLYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
L Y+S+K+ H L I V GC+A++ ++LL K LDLV GP + LP L
Sbjct: 61 LLGGYKSLKERHPH-----LVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPEL 113
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 13 FVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
FV+IM+GC+N CTYC+VP TRGRE SR + I+ EVR L+ EV NVN
Sbjct: 152 FVTIMQGCNNFCTYCVVPHTRGREISRKPEDIVAEVRHLAAHGVREVTLLGQNVN 206
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|399991684|ref|YP_006571924.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398656239|gb|AFO90205.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 440
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + P +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ ++ ++ + + PKA
Sbjct: 121 EGEKVLDTDFPEEDKFEKLKNRPKA 145
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAQDLVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVM---TCA 99
+++W + K G ++ +HP + L+ TCA
Sbjct: 210 GAGPNGDMTLAQLIWELDKVDGLERIRFTTSHPNDMQDDLIEAHGTCA 257
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|426404031|ref|YP_007023002.1| hypothetical protein Bdt_2049 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860699|gb|AFY01735.1| hypothetical protein Bdt_2049 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 453
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY +GCQMNVNDTE ++++L+ + V P+ A +I++ +C++RE KV+ +
Sbjct: 23 VYISTYGCQMNVNDTERMYALLEMQNFVPVADPKMASLIIINSCSVREKPVHKVYSEVGT 82
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y+ MK+ + LKIGV GC+ ++ K++L++ + +D V G D LP+L+A +++
Sbjct: 83 YKYMKR-----KNPDLKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAKSFA 137
Query: 175 NQ 176
+
Sbjct: 138 GE 139
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+ +V+I +GCDN CT+C+VP+TRGRE+SRP+Q IL ++R L + EV NVN
Sbjct: 164 VATYVNITKGCDNFCTFCVVPYTRGREKSRPVQHILTDIRHLVKRGVKEVTLLGQNVN 221
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|197117156|ref|YP_002137583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
bemidjiensis Bem]
gi|229890543|sp|B5EE49.1|MIAB_GEOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|197086516|gb|ACH37787.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Geobacter bemidjiensis Bem]
Length = 441
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 7/151 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y E FGCQMNV+D+E + +++K GY + P +AD++L+ TC+IR AE +V+
Sbjct: 4 AKKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGH 63
Query: 112 LRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L ++S+K +T P L IGV GC+A++ + LL+K ++LV G + L ++A
Sbjct: 64 LGKFKSIK------KTKPGLIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVA 117
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ + DE D+ P + + G
Sbjct: 118 AAEEGKRSSQTDFLDDEKRFDLFPHSEAEGG 148
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V+ FV++M+GCDN C YCIVP RGRE SR +++EVRAL+D EV NV
Sbjct: 146 EGGVTRFVTVMQGCDNFCAYCIVPHVRGREISRSAAKVVEEVRALADSGVTEVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 82 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 141
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 142 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 197 AMFSKETVVEV 207
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 226 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 283
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLVANGYKEITLLGQNVN 268
>gi|262340984|ref|YP_003283839.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272321|gb|ACY40229.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 453
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+ L+ Y E +GCQMN++D+E+V SIL + G+ N+ +AD+IL +C+IRE AE +
Sbjct: 9 KKLNQSFYIENYGCQMNLSDSEIVISILSNDGFVLSNNLEKADIILFNSCSIREKAELTL 68
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
RL +Q+ + GV+GC+++++ L+E E+ +D P+SYK +
Sbjct: 69 KKRL------EQLQFLKKKKKTLFGVIGCLSKKIINFLIE-EKKIDFFVNPNSYKKISDF 121
Query: 169 LALTYSNQTAINVLLSLDETYADITP 194
+ + ++++ +ETY+DI P
Sbjct: 122 IRYAMDGKKSLHLNHQKNETYSDIQP 147
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
LN+ V+ F+SI RGCDNMCT+CIVPFTRGRERS SI+++ + L Y E+
Sbjct: 150 LNQKKVTTFLSITRGCDNMCTFCIVPFTRGRERSSSPYSIIEQCKHLYQNGYKEITLLGQ 209
Query: 65 NVN 67
NV+
Sbjct: 210 NVD 212
>gi|159043568|ref|YP_001532362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Dinoroseobacter shibae DFL 12]
gi|229890517|sp|A8LSE7.1|MIAB_DINSH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157911328|gb|ABV92761.1| RNA modification enzyme [Dinoroseobacter shibae DFL 12]
Length = 437
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + +GCQMNV D+E + + GY + + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLYIKTYGCQMNVYDSERMAEAMGGEGYVQTDRAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ ++ ++ +DLV GP +Y LP L A
Sbjct: 66 RFKPLKAEKPD-----LKIGVAGCVAQAEGAEIMRRQPLVDLVVGPQAYHRLPELTARAA 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ A++ ++ + + PKA
Sbjct: 121 TGAKALDTDFPEEDKFDHLAARPKA 145
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP +L E R L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPAARVLTEARDLVERGVREITLLGQNVNAYH 209
Query: 69 ------TEVVWSILKSSGYSKV----NHPREADVILV 95
++W + + G ++ +HP + D L+
Sbjct: 210 GHARGLAGLIWDLAEIDGLERIRFTTSHPNDMDDALI 246
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 13/156 (8%)
Query: 33 RGRERSRPMQSILDE-VRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
RG+E Q +DE + L + K Y +GCQMN +DTEV+ I + GY N +
Sbjct: 42 RGKEEVEYNQFQIDERFQGLGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTED 101
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSL 146
A+VIL+ TCAIRENAE KV+ L +++K R P L +GV GCM+ E + +
Sbjct: 102 ANVILLNTCAIRENAENKVFGELGHLKALK------REKPDLILGVCGCMSQEESVVNRI 155
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINV 181
L+K +DL+ G + LP LL+ Y S + I V
Sbjct: 156 LKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEV 191
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + + +V+IM GCD CTYCIVP+TRG+ERSR I+ EVR L+ + Y E+
Sbjct: 204 RARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKEITLLG 263
Query: 64 MNVN 67
NVN
Sbjct: 264 QNVN 267
>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
Length = 509
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+ +KQ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKPLKQ-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S T + V
Sbjct: 182 AMFSKATVVEV 192
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I++E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIINEIRHLAANGYKEITLLGQNVN 268
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 13/156 (8%)
Query: 33 RGRERSRPMQSILDE-VRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
RG+E Q +DE + L + K Y +GCQMN +DTEV+ I + GY N +
Sbjct: 42 RGKEEVEYNQFQIDERFQGLGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTED 101
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSL 146
A+VIL+ TCAIRENAE KV+ L +++K R P L +GV GCM+ E + +
Sbjct: 102 ANVILLNTCAIRENAENKVFGELGHLKALK------REKPDLILGVCGCMSQEESVVNRI 155
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINV 181
L+K +DL+ G + LP LL+ Y S + I V
Sbjct: 156 LKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEV 191
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + + +V+IM GCD CTYCIVP+TRG+ERSR I+ EVR L+ + Y E+
Sbjct: 204 RARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKEITLLG 263
Query: 64 MNVN 67
NVN
Sbjct: 264 QNVN 267
>gi|253699420|ref|YP_003020609.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter sp.
M21]
gi|251774270|gb|ACT16851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M21]
Length = 441
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K+Y E FGCQMNV+D+E + +++K GY + P +AD++L+ TC+IR AE +V+
Sbjct: 4 AKKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGH 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L ++S+K+ L IGV GC+A++ + LL+K ++LV G + L ++A
Sbjct: 64 LGKFKSIKKGKPG-----LIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAA 118
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDG 201
+ + DE D+ P A + G
Sbjct: 119 AEQGKRSSQTDFLDDEKRFDLFPHAEAEGG 148
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V+ FV++M+GCDN C YCIVP RGRE SR +++EVRAL+ EV NV
Sbjct: 146 EGGVTRFVTVMQGCDNFCAYCIVPHVRGREISRSAVKVVEEVRALAGGGVTEVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>gi|357421083|ref|YP_004928532.1| RNA modification protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803593|gb|AER40707.1| RNA modification protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 452
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMNV+DTE++ SIL +G+ + ++A++IL+ TCAIRE AE + +RL+
Sbjct: 8 YIESYGCQMNVSDTEIIISILLKNGFLFTENLKKANIILLNTCAIREKAELTIKNRLQ-- 65
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK-EQALDLVAGPDSYKDLPRLLALTYS 174
Q+ K + L +G+LGC++ ++ S+ + +D GPDSYK +P +++
Sbjct: 66 ----QLIKNKKKSTL-LGILGCLS-KISVSMRDHFSNIIDFSVGPDSYKSIPNIISSLMK 119
Query: 175 NQTAINVLL-SLDETYADITP 194
+ + L + ETY+D+ P
Sbjct: 120 GKKNPKIFLKNQKETYSDVNP 140
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
++ ++ F+SI RGC+NMC++CIVPFTRGRERSR SI++E + L + EV NV
Sbjct: 144 KNKITTFLSITRGCNNMCSFCIVPFTRGRERSRNPYSIIEECKNLYKNGFKEVTLLGQNV 203
Query: 67 N 67
+
Sbjct: 204 D 204
>gi|302381348|ref|YP_003817171.1| MiaB family RNA modification protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302191976|gb|ADK99547.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides
ATCC 15264]
Length = 466
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A +++ + +GCQMNV D+E + +L+ GY+ + P AD +++ TC IRE A KV+
Sbjct: 17 AAPKRLFIKTYGCQMNVYDSERMADVLRPLGYAPTDTPEGADFVILNTCHIREKAAEKVY 76
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R MK + I V GC+A+ + ++ ++ A+D+V GP +Y LP LL
Sbjct: 77 SELGKLRLMKLDKAASGGGAMTIAVAGCVAQAEGEEIMRRQPAVDIVVGPQAYHQLPELL 136
Query: 170 ALTY-SNQTAINVLLSLDETYADITPKAVSTDG 201
T + I + +E + + P+ + G
Sbjct: 137 TRTARARGERIGADFAPNEKFDAMAPELLGVRG 169
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D +AF+++ GCD C++C+VP+TRG E SRP+ +LDE R L+ + EV NVN
Sbjct: 171 DGPTAFLTVQEGCDKFCSFCVVPYTRGAEWSRPVADVLDEARGLAAQGVREVTLLGQNVN 230
Query: 68 -----DTEVVWSILK 77
+ VW++ K
Sbjct: 231 AYDGAGPDGVWTLAK 245
>gi|444433975|ref|ZP_21229104.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
soli NBRC 108243]
gi|443885144|dbj|GAC70825.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
soli NBRC 108243]
Length = 578
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 36 ERSRPMQSILDEVRALSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S P S +DE A D Y +GCQMNV+D+E + +L+ +GY++ +AD+++
Sbjct: 53 EGSAPRVSGVDETNAHRDLRYQVRTYGCQMNVHDSERIAGLLEGAGYTRAEDGDDADLVV 112
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
TCAIRENA+ K++ L + K HR ++I V GC+A++ K ++L K +D
Sbjct: 113 FNTCAIRENADNKLYGNLSHLAPV----KSHRPG-MQIAVGGCLAQKDKDAVLRKAPWVD 167
Query: 155 LVAGPDSYKDLPRLLALTYSNQTA-INVLLSLD 186
+V G + LP LL N A + +L SL+
Sbjct: 168 VVFGTHNIGSLPTLLDRARHNDEAQVEILESLE 200
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ + S +VS+ GC+N CT+CIVP RG+E R +L EV AL D+ EV NV
Sbjct: 211 DSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDVLAEVSALVDQGVVEVTLLGQNV 270
Query: 67 N 67
N
Sbjct: 271 N 271
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 13/156 (8%)
Query: 33 RGRERSRPMQSILDE-VRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
RG+E Q +DE + L + K Y +GCQMN +DTEV+ I + GY N +
Sbjct: 42 RGKEEVEYNQFQIDERFQGLGNGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTED 101
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSL 146
A+VIL+ TCAIRENAE KV+ L +++K R P L +GV GCM+ E + +
Sbjct: 102 ANVILLNTCAIRENAENKVFGELGHLKALK------REKPDLILGVCGCMSQEESVVNRI 155
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINV 181
L+K +DL+ G + LP LL+ Y S + I V
Sbjct: 156 LKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEV 191
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + + +V+IM GCD CTYCIVP+TRG+ERSR I+ EVR L+ + Y E+
Sbjct: 204 RARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKEITLLG 263
Query: 64 MNVN 67
NVN
Sbjct: 264 QNVN 267
>gi|451940197|ref|YP_007460835.1| RNA modification enzyme, MiaB family [Bartonella australis
Aust/NH1]
gi|451899584|gb|AGF74047.1| RNA modification enzyme, MiaB family [Bartonella australis
Aust/NH1]
Length = 464
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A KV+ + +GCQMNV D++ + L + GY + P +AD+IL+ TC IRE A K++
Sbjct: 18 AAPKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTHTPSDADLILINTCHIREKAAEKLY 77
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R M++ + PL IGV GC+A+ +L + +D V GP Y LP LL
Sbjct: 78 SDLGRLRIMRRERVSEK--PLIIGVTGCVAQAEGSEILRRAPTVDFVIGPQMYHRLPELL 135
Query: 170 ALTYSNQTAINVLLSLDETYADITP 194
+ + ++++ Y + P
Sbjct: 136 KQVKRGEKIVETSYAVEDKYTYLPP 160
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I E R L + E+ NVN
Sbjct: 171 VSAFLTVQEGCDKFCTFCVVPYTRGAEVSRSVEQITYEARQLIEAGVKEITLLGQNVNGW 230
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 231 HGQSADGKAWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDESLI 273
>gi|158421632|ref|YP_001522924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azorhizobium
caulinodans ORS 571]
gi|229890445|sp|A8IG00.1|MIAB_AZOC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|158328521|dbj|BAF86006.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 464
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + FGCQMNV D++ + L GY + P +AD++++ TC IRE A KV+ L
Sbjct: 6 KLYVKSFGCQMNVYDSQRMADALAKEGYVETQDPADADLVILNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R KQ T I V GC+A+ ++++ +DLV GP SY LP +LA
Sbjct: 66 RLRKAKQDAGSDTT----IAVAGCVAQAEGAEIMKRAPVVDLVVGPQSYHRLPEMLARVR 121
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
+ ++ ++ + + P A +T R
Sbjct: 122 DGKRVVDTEFPAEDKFDHLPAPSAAATKKR 151
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFV++ GCD CT+C+VP+TRG E SR + I+ E RAL D+ E+ NVN
Sbjct: 154 TAFVTVQEGCDKFCTFCVVPYTRGAEVSRSVSKIVGEARALVDQGVREITLIGQNVN 210
>gi|51473976|ref|YP_067733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
typhi str. Wilmington]
gi|383752752|ref|YP_005427852.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
typhi str. TH1527]
gi|383843587|ref|YP_005424090.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
typhi str. B9991CWPP]
gi|81389933|sp|Q68VU1.1|MIAB_RICTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|51460288|gb|AAU04251.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str.
Wilmington]
gi|380759395|gb|AFE54630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
typhi str. TH1527]
gi|380760234|gb|AFE55468.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
typhi str. B9991CWPP]
Length = 445
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY +EAD+I++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ K+ P I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEVIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + T G S
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDNLPEQLYTQGASSF 155
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYTQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKVVSNDTKEIILLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|414164431|ref|ZP_11420678.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
felis ATCC 53690]
gi|410882211|gb|EKS30051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
felis ATCC 53690]
Length = 475
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L G+ + EAD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADATEADLVILNTCHIREKASEKVFSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK+ +KI V GC+A+ + + + +D+V GP SY +LP+LLA
Sbjct: 66 RLRVMKE-EAAREGREMKIAVAGCVAQAEGEEITRRASTVDVVVGPQSYHNLPKLLARAR 124
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
S AI +++ + + PK + R
Sbjct: 125 SGAPAIETEFPIEDKFTSLPAPKPAAIRAR 154
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++ GCD CT+C+VP+TRG E SRP+ +I+D+V+ L D E+ NVN
Sbjct: 156 ISSFVTVQEGCDKFCTFCVVPYTRGMEVSRPVAAIVDDVKRLVDNGVREITLIGQNVN 213
>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
Length = 457
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|337739263|ref|YP_004630991.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Oligotropha carboxidovorans OM5]
gi|386028282|ref|YP_005949057.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Oligotropha carboxidovorans OM4]
gi|336093350|gb|AEI01176.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Oligotropha carboxidovorans OM4]
gi|336096927|gb|AEI04750.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Oligotropha carboxidovorans OM5]
Length = 473
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L G+ + P EAD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADPAEADLVILNTCHIREKASEKVFSELG 65
Query: 114 FYRSMKQIHKKHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R +K+ + RT +KI V GC+A+ + + +D+V GP SY +LP+LLA
Sbjct: 66 RLRVIKE--EAARTGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 123
Query: 173 YSNQTAINVLLSLDETYADI-TPKAVSTDGR 202
AI +++ ++ + PK + R
Sbjct: 124 RDGAPAIETEFPIEDKFSALPAPKPAAIRAR 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAFV++ GCD CT+C+VP+TRG E SRP+ I+ + + L++ E+ NVN
Sbjct: 156 VSAFVTVQEGCDKFCTFCVVPYTRGMEVSRPVADIVADAKRLAENGVRELTLIGQNVN 213
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ IL G+ + EAD+IL+ TCA+RENAE KV+ +
Sbjct: 70 KFYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIG 129
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ +K R P L +GV GCM+ E + LL+K Q +DL+ G + LP+LL
Sbjct: 130 HLKQLK------REKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLL 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + A+V+IM GCD CTYCIVP+TRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 208 KIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIDEVRDLARQGYKEITLLG 267
Query: 64 MNVN 67
NVN
Sbjct: 268 QNVN 271
>gi|209883674|ref|YP_002287531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oligotropha
carboxidovorans OM5]
gi|229890581|sp|B6JCT6.1|MIAB_OLICO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|209871870|gb|ACI91666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha
carboxidovorans OM5]
Length = 475
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L G+ + P EAD++++ TC IRE A KV+ L
Sbjct: 8 KLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADPAEADLVILNTCHIREKASEKVFSELG 67
Query: 114 FYRSMKQIHKKHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R +K+ + RT +KI V GC+A+ + + +D+V GP SY +LP+LLA
Sbjct: 68 RLRVIKE--EAARTGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 125
Query: 173 YSNQTAINVLLSLDETYADI-TPKAVSTDGR 202
AI +++ ++ + PK + R
Sbjct: 126 RDGAPAIETEFPIEDKFSALPAPKPAAIRAR 156
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAFV++ GCD CT+C+VP+TRG E SRP+ I+ + + L++ E+ NVN
Sbjct: 158 VSAFVTVQEGCDKFCTFCVVPYTRGMEVSRPVADIVADAKRLAENGVRELTLIGQNVN 215
>gi|381397041|ref|ZP_09922455.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microbacterium laevaniformans OR221]
gi|380776000|gb|EIC09290.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microbacterium laevaniformans OR221]
Length = 516
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 60 FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMK 119
FGCQMNV+D+E + L+S+GY + EADV+++ TCA+R+NA GK++ L +S K
Sbjct: 32 FGCQMNVHDSERLSGSLESAGYVRAEAGAEADVVVINTCAVRDNAAGKLYGTLGHLKSRK 91
Query: 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
H+ ++I V GCMA+ K ++L+K +D+V G + LP LL N A
Sbjct: 92 DRHEG-----MQIAVGGCMAQMDKDAVLDKAPWVDVVFGTHNMGALPSLLERARHNGEAE 146
Query: 180 NVLLSLDETYADITP 194
+L E + P
Sbjct: 147 LEILEALEVFPSTLP 161
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL E+R L + EV NVN
Sbjct: 169 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILSEIRLLVEDGAVEVTLLGQNVNSYG 228
Query: 68 ----DTEVVWSILKSSG 80
D + +L+++G
Sbjct: 229 VEFGDRQAFGKLLRAAG 245
>gi|426391397|ref|XP_004062061.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 418
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 56 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVILPPR 115
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 116 PPKVLGLQ 123
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 138 MAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV 197
MAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 1 MAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQT 60
Query: 198 STDG 201
S
Sbjct: 61 SASA 64
>gi|254501345|ref|ZP_05113496.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
DFL-11]
gi|222437416|gb|EEE44095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii
DFL-11]
Length = 486
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ +GCQMNV D+E + +L GYS EAD++++ TC IRE A KV+ L
Sbjct: 27 KVFVRTYGCQMNVYDSERMTDVLAPQGYSTTADMEEADLVILNTCHIREKAAEKVYSELG 86
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ K + +GV GC+A+ + + + +D+V GP SY LP LL
Sbjct: 87 RIRKVKEERAKAGK-DMMVGVAGCVAQAEGEEISRRAPIVDMVVGPQSYHQLPSLLDKAR 145
Query: 174 SNQTAINVLLSLDETYADITPKA 196
Q + +D + ++ +A
Sbjct: 146 QGQKVVETEFDIDAKFDHLSARA 168
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD CT+C+VP+TRG E SR ++ I+ E + ++ EV NVN
Sbjct: 178 AAFLTVQEGCDKFCTFCVVPYTRGAEVSRSVEQIVTEAQRMAASGVREVTLLGQNVN 234
>gi|172040556|ref|YP_001800270.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Corynebacterium urealyticum DSM 7109]
gi|448823534|ref|YP_007416699.1| 2-methylthioadenine synthetase [Corynebacterium urealyticum DSM
7111]
gi|229890501|sp|B1VDD8.1|MIAB_CORU7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171851860|emb|CAQ04836.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
gi|448277031|gb|AGE36455.1| 2-methylthioadenine synthetase [Corynebacterium urealyticum DSM
7111]
Length = 540
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ SGY + E DV++ TCA+RENA+ +++ L + M
Sbjct: 47 TFGCQMNVHDSERLSGLLEDSGYQPAANGEEPDVLVFNTCAVRENADNRLYGTLAMVKPM 106
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K R ++I V GCMA++ K +++++ +D+V G + LP LL + NQ A
Sbjct: 107 KD-----RNPGMQIAVGGCMAQKDKDAVVDRAPWVDVVFGTHNIGSLPTLLERSAHNQRA 161
Query: 179 -INVLLSLDE 187
+ +L SL+E
Sbjct: 162 EVEILDSLEE 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + S +VS+ GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 181 ESAYSGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGEILAEVQALVDQGVQEVTLLGQNV 240
Query: 67 N 67
N
Sbjct: 241 N 241
>gi|426391399|ref|XP_004062062.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 327
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKV 55
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V
Sbjct: 56 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQV 110
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 138 MAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV 197
MAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 1 MAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQT 60
Query: 198 STDG 201
S
Sbjct: 61 SASA 64
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+++K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKALKR-----RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|324997385|ref|ZP_08118497.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudonocardia
sp. P1]
Length = 492
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
+GCQMNV+DTE + +L+ +GY++ P ADV++ TCA+RENA+ K++ L R
Sbjct: 9 TYGCQMNVHDTERMAGLLEQAGYARAEDPDAADVVVFNTCAVRENADNKLYGNLGHLRPR 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
KQ + ++I V GC+A++ + ++ K +D+V G + LP LL N+TA
Sbjct: 69 KQANPD-----MQIAVGGCLAQKDRDTITRKAPWVDVVFGTHNVHALPTLLERARHNETA 123
Query: 179 -INVLLSLD 186
+ + SL+
Sbjct: 124 EVEIAESLE 132
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VSI GC+N CT+CIVP RG+ER R +L EV AL+ + EV NV
Sbjct: 143 ESAYAGWVSISVGCNNTCTFCIVPALRGKERDRRPGDVLAEVEALAAEGVLEVTLLGQNV 202
Query: 67 N-------DTEVVWSILKS----SGYSKVN----HPRE--ADVILVMT 97
N D E +L++ G +V HPR+ +DVI M
Sbjct: 203 NAYGQDMGDREAFSKLLRACGGVEGLERVRFTSPHPRDFTSDVIAAMA 250
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVN 268
>gi|319403640|emb|CBI77225.1| bifunctional enzyme [Bartonella rochalimae ATCC BAA-1498]
Length = 460
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY P +AD+IL+ TC IRE A K++ L
Sbjct: 17 KVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSDLG 76
Query: 114 FYRSMKQ--IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ ++Q H K PL IGV GC+A+ +L + +D + GP Y LP LL
Sbjct: 77 RLQIIRQGRTHDK----PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQ 132
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ I ++++ ++ + P
Sbjct: 133 VKQGKKVIETDYAVEDKFSHLPP 155
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+SAF+++ GCD CT+C+VP+TRG E SR ++ I E L + E+ NVN
Sbjct: 166 ISAFLTVQEGCDKFCTFCVVPYTRGAEISRSVKQITAEAYQLIEAGVKEITLLGQNVN 223
>gi|452944045|ref|YP_007500210.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. HO]
gi|452882463|gb|AGG15167.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. HO]
Length = 435
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + + +GCQMN+ND+E + IL++ GY +AD++++ TC IRE + KVW L
Sbjct: 2 KYFIKTYGCQMNINDSEKIKGILQTQGYEPATKEEDADLVILNTCTIREKPDQKVWSHLG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K + +KIGV GCMA+R + K +DLV G + +P+LL
Sbjct: 62 EIKKLKS-----KNPNVKIGVCGCMAQRAGYEIASKMPFIDLVFGTKNIHHIPKLLEDVK 116
Query: 174 SNQTAINVLLSLD 186
AI +L D
Sbjct: 117 LGNRAIEILEEED 129
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
++S A+V+IMRGCD CTYC+VPFTRG+ERSR QSILDEV++L D E+ NV
Sbjct: 143 DNSYCAYVTIMRGCDKECTYCVVPFTRGKERSRNPQSILDEVKSLVDSGVMEIHLIGQNV 202
>gi|383488202|ref|YP_005405881.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Chernikova]
gi|383489887|ref|YP_005407564.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Dachau]
gi|380761081|gb|AFE49603.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Chernikova]
gi|380763610|gb|AFE52129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Dachau]
Length = 445
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY +EAD+I++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ K+ P I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKQLIDLDFVEEAKFDNLPEQLYPQGASSF 155
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDE-VRALSDKVYFEVFGC 62
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E ++A+S+ E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKAVSNDAK-EIILL 204
Query: 63 QMNVN 67
NVN
Sbjct: 205 GQNVN 209
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+ +KQ + L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKPLKQ-----KNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S T + V
Sbjct: 182 AMFSKATVVEV 192
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEVRHLAANGYKEITLLGQNVN 268
>gi|15604640|ref|NP_221158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Madrid E]
gi|383486787|ref|YP_005404467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. GvV257]
gi|383489047|ref|YP_005406725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Katsinyian]
gi|383500025|ref|YP_005413386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383500860|ref|YP_005414220.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. RpGvF24]
gi|386082693|ref|YP_005999272.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia prowazekii
str. Rp22]
gi|6226397|sp|Q9ZCE8.1|MIAB_RICPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|3861335|emb|CAA15234.1| unknown [Rickettsia prowazekii str. Madrid E]
gi|292572459|gb|ADE30374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia prowazekii
str. Rp22]
gi|380757152|gb|AFE52389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. GvV257]
gi|380758557|gb|AFE53793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. RpGvF24]
gi|380761926|gb|AFE50447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. Katsinyian]
gi|380762771|gb|AFE51291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
prowazekii str. BuV67-CWPP]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY +EAD+I++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ K+ P I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKQLIDLDFVEEAKFDNLPEQLYPQGASSF 155
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDE-VRALSDKVYFEVFGC 62
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E ++A+S+ E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKAVSNDAK-EIILL 204
Query: 63 QMNVN 67
NVN
Sbjct: 205 GQNVN 209
>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|384128563|ref|YP_005511176.1| MiaB family RNA modification protein [Hydrogenobacter thermophilus
TK-6]
gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
TK-6]
Length = 433
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + FGCQMN ND+E + +L++ GY + +EAD+IL+ TC IRE + KV+ L
Sbjct: 2 KYYIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K+ + K IGV GC+A+R+ L++K +D++ + LP L+
Sbjct: 62 EYKKLKEQNPKAL-----IGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQ 116
Query: 174 SNQTAINVL 182
+ A+ +L
Sbjct: 117 AGYKAVAIL 125
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
A+V++M+GCD CTYC+VP TRGR+RSR ++SIL EVR L EV NV
Sbjct: 148 AYVTVMKGCDKNCTYCVVPKTRGRQRSRSLESILKEVRDLVSDGVKEVHLLGQNVTAWGK 207
Query: 69 ------TEVVWSILKSSGYSKV----NHPREAD 91
+E+++ + + G ++ HP++ D
Sbjct: 208 DIGKHFSELLYRVAEIDGVERIRFTTGHPKDLD 240
>gi|239917253|ref|YP_002956811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
2665]
gi|281414269|ref|ZP_06246011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
2665]
gi|239838460|gb|ACS30257.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC
2665]
Length = 515
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 15/159 (9%)
Query: 29 VPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
P + +RP + + EVR FGCQMNV+D+E + +L+S+GY+ V
Sbjct: 11 TPLAQDGAAARPHEGLTYEVR---------TFGCQMNVHDSERISGLLESTGYAPVADNA 61
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLE 148
+AD+++ TCA+RENA+ +++ L R++K H ++I V GC+A++ + ++
Sbjct: 62 QADLVVFNTCAVRENADNRLYGNLGNLRAVKDAHPG-----MQIAVGGCLAQKDQAAIQR 116
Query: 149 KEQALDLVAGPDSYKDLPRLLALTYSNQTA-INVLLSLD 186
+ +D+V G + LP LL + N A I +L SL+
Sbjct: 117 RAPWVDVVFGTHNIGSLPVLLERSRHNAEAEIEILESLE 155
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL EV NVN
Sbjct: 170 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGEILAEVQALVGAGAVEVTLLGQNVN 226
>gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13]
gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13]
gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
Length = 467
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDARAADGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|21674804|ref|NP_662869.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
tepidum TLS]
gi|81790619|sp|Q8KB05.1|MIAB_CHLTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|21648022|gb|AAM73211.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 444
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 8/146 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ Y FGCQMN D+E+V ++L++ G+ AD++L+ +CA+RENAE ++ +
Sbjct: 8 MPSSFYIHTFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGN 67
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L M +K R L IGVLGC+ + ++ + +D + GPD+Y++L L+A
Sbjct: 68 IL-----MHLKGRKRRCKELVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVA 122
Query: 171 LTYSNQTAINVLLSLD--ETYADITP 194
A LL D ETYA I P
Sbjct: 123 -GLREAVARPALLDYDQTETYAGIEP 147
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S+SAF+ +MRGC+N C +C+VP TRGRERS + ++ EV AL + EV NVN
Sbjct: 152 SISAFLPVMRGCNNHCAFCVVPVTRGRERSVGFERVVAEVVALEKAGFREVTLLGQNVNS 211
Query: 69 TEVVWSILKSSGYSK--------------VNHPREADVILVMTCAIREN 103
L +G + +HP++ LV A R N
Sbjct: 212 WRDAEKGLDFAGLLEGVSLAVPSMRIRFTTSHPKDISEALVKVIAARPN 260
>gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
Length = 467
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDARAADGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
1330]
gi|161620062|ref|YP_001593949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella canis
ATCC 23365]
gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94]
gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99]
gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1]
gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340791734|ref|YP_004757199.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|376275261|ref|YP_005115700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
gi|376281796|ref|YP_005155802.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|384225788|ref|YP_005616952.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|81751814|sp|Q8FXU4.1|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890452|sp|A9M9Y3.1|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330]
gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365]
gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94]
gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99]
gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1]
gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340560193|gb|AEK55431.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|343383968|gb|AEM19460.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|358259395|gb|AEU07130.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|363403828|gb|AEW14123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
Length = 467
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK + L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDA-RAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|319406556|emb|CBI80198.1| bifunctional enzyme [Bartonella sp. 1-1C]
Length = 460
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY P +AD+IL+ TC IRE A K++ L
Sbjct: 17 KVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSDLG 76
Query: 114 FYRSMKQ--IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ ++Q H K PL IGV GC+A+ +L + +D + GP Y LP LL
Sbjct: 77 RLQIIRQGRTHDK----PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQ 132
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ + ++++ ++ + P
Sbjct: 133 VKQGKKVVETDYAVEDKFSHLPP 155
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
+SAF+++ GCD CT+C+VP+TRG E SR ++ I E L + E+ NVN
Sbjct: 166 ISAFLTVQEGCDKFCTFCVVPYTRGAEISRSVKQITAEAHQLIEAGVKEITLLGQNVNAW 225
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
+++ + K G ++ NHPR+ D L+
Sbjct: 226 HGQSIDGKTWRLGDLLHHLAKIDGLKRLRYTTNHPRDMDDSLI 268
>gi|319405110|emb|CBI78714.1| bifunctional enzyme [Bartonella sp. AR 15-3]
Length = 460
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY P +AD+IL+ TC IRE A K++ L
Sbjct: 17 KVFIKTYGCQMNVYDSQRMNDSLSTQGYIATQTPNDADLILINTCHIREKAAEKLYSDLG 76
Query: 114 FYRSMKQ--IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ ++Q H K PL IGV GC+A+ +L + +D + GP Y LP LL
Sbjct: 77 RLQIIRQGRTHDK----PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQ 132
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ + ++++ + + P
Sbjct: 133 VKQGKKVVETDYAVEDKFTQLPP 155
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
+ + +SAF+++ GCD CT+C+VP+TRG E SR ++ I DE R L + E+
Sbjct: 161 VQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEISRSVKQITDEARQLIEAGVKEITLLGQ 220
Query: 65 NVN 67
NVN
Sbjct: 221 NVN 223
>gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
Length = 467
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDARAADGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis
ATCC 25840]
gi|229890453|sp|A5VTA1.1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840]
Length = 467
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK + L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDA-RAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLAVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513]
gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513]
Length = 467
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK + L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDA-RAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33]
gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33]
Length = 467
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDARAADGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEVEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|163844167|ref|YP_001628572.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
ATCC 23445]
gi|229890454|sp|B0CK00.1|MIAB_BRUSI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163674890|gb|ABY39001.1| RNA modification enzyme, MiaB family [Brucella suis ATCC 23445]
Length = 467
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDARAADGK-ELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis bv. 1 str. 16M]
gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis ATCC 23457]
gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|384212505|ref|YP_005601589.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|384409604|ref|YP_005598225.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|384446137|ref|YP_005604856.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
gi|81851031|sp|Q8YEA2.1|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M]
gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
ATCC 23457]
gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|349744126|gb|AEQ09669.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
Length = 467
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK + L IGV GC+A+ + +L + +DLV GP +Y LP
Sbjct: 79 YSALGRLRKMKDA-RAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNA 137
Query: 169 LALTYSNQTAINVLLSLDETY 189
LA + + ++++ +
Sbjct: 138 LARVRGGEKVVETDYAIEDKF 158
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G + + +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIAHLRYTTSHPRDMDDSLI 276
>gi|241202785|ref|YP_002973881.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240856675|gb|ACS54342.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 473
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY + EAD++L+ TC IRE A KV+
Sbjct: 25 SRKVFIKTYGCQMNVYDSMRMSDALARDGYEPTDDMEEADLVLLNTCHIREKAAEKVYSA 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L L
Sbjct: 85 LGRLRDMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRL 143
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 144 AKQGQRVVDTEYAIEDKF 161
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L+D E+
Sbjct: 171 RIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLADSGVREITLLG 230
Query: 64 MNVN 67
NVN
Sbjct: 231 QNVN 234
>gi|126696829|ref|YP_001091715.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9301]
gi|229890597|sp|A3PED9.1|MIAB_PROM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|126543872|gb|ABO18114.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9301]
Length = 464
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 46 DEVRALSDKV----YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
DE++ D + FGCQMN D+E + L+ GY++ ++ AD++L TC IR
Sbjct: 8 DEIKTQKDSTTGSYWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIR 67
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161
+NAE KV+ L +Q +KH+T LK+ V GC+A++ +SLL + LDLV GP
Sbjct: 68 DNAEQKVYSFL-----GRQAKRKHKTPRLKLVVAGCLAQQEGESLLRRVPELDLVMGPQH 122
Query: 162 YKDLPRLLA-LTYSNQTAINVLLSLDETY--ADIT 193
+L LL + NQ +++ +ET+ DIT
Sbjct: 123 VNNLENLLGKVDLGNQ-----VVATEETFISEDIT 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S+ +V+I+ GC+ C+YC+VP RG+E+SR +I E++ L+D + E+ N+
Sbjct: 157 ESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRYPNAIKSEIQKLADDNFKEITLLGQNI 216
Query: 67 N 67
+
Sbjct: 217 D 217
>gi|197106915|ref|YP_002132292.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Phenylobacterium zucineum HLK1]
gi|229890591|sp|B4RC70.1|MIAB_PHEZH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196480335|gb|ACG79863.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1]
Length = 450
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A + ++Y + +GCQMNV D+E + +L GY + P AD++++ TC IRE A KV+
Sbjct: 5 APAKRLYIKTYGCQMNVYDSERMADVLAPLGYGVTDDPAAADLVVLNTCHIREKATEKVY 64
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L + +K+ + + I V GC+A+ + ++ ++ A+DLV GP +Y LP L+
Sbjct: 65 SELGQIKRLKEARRAEGQG-MTIAVAGCVAQAEGEEIMRRQPAVDLVVGPQAYHQLPELI 123
Query: 170 ALTY 173
A +
Sbjct: 124 ARAH 127
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 15/106 (14%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP ++I E RAL+ K EV NVN
Sbjct: 155 GVTAFLTVQEGCDKFCTFCVVPYTRGGEWSRPAEAIEAEARALAAKGVREVTLLGQNVNA 214
Query: 69 TE-----------VVWSILKSSGYSKV----NHPREADVILVMTCA 99
+ +V + K G ++ +HPR+ D L+ A
Sbjct: 215 YDGANGQGAGLAGLVRRLAKIPGLDRIRYTTSHPRDMDDDLIAAHA 260
>gi|123969036|ref|YP_001009894.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. AS9601]
gi|229890604|sp|A2BSM6.1|MIAB_PROMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123199146|gb|ABM70787.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
AS9601]
Length = 464
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
++P + I + + + + FGCQMN D+E + L+ GY++ ++ AD++L T
Sbjct: 5 TKPDEKIFQK-NSTTGSYWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNT 63
Query: 98 CAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
C IR+NAE KV+ L +Q +KH+T LK+ V GC+A++ +SLL + LDLV
Sbjct: 64 CTIRDNAEQKVYSFL-----GRQAKRKHKTPSLKLVVAGCLAQQEGESLLRRVPELDLVM 118
Query: 158 GPDSYKDLPRLLA-LTYSNQTA 178
GP +L LL + NQ A
Sbjct: 119 GPQHVNNLENLLGKVDLGNQVA 140
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S+ +V+I+ GC+ C+YC+VP RG+E+SR +I E++ L+ + E+ N+
Sbjct: 157 ESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRYPNAIKSEIQKLAGDNFKEITLLGQNI 216
Query: 67 N 67
+
Sbjct: 217 D 217
>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus inulinus CASD]
Length = 494
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
E +GCQMN +DTEV+ IL+ GY + + P+ ADVIL+ TCAIRENAE KV+ + +
Sbjct: 54 IETYGCQMNEHDTEVMAGILEKMGYHETDDPKLADVILINTCAIRENAENKVFGHIGTLK 113
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
++K + K L +GV GCMA E + +L K +DL+ G + LP+LL
Sbjct: 114 TLK-LEKPG----LILGVCGCMAQEEVVVNKILAKHPQVDLIFGTHNIHRLPQLL 163
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 197 AWVNIMYGCDKFCTYCIVPYTRGKERSRHPEEIVQEVRELARQGYKEITLLGQNVN 252
>gi|424879737|ref|ZP_18303369.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WU95]
gi|392516100|gb|EIW40832.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WU95]
Length = 473
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 25 SRKVFIKTYGCQMNVYDSMRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L L
Sbjct: 85 LGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRL 143
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 144 AKQGQRVVDTEYAIEDKF 161
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L+D E+
Sbjct: 171 RIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLADSGVREITLLG 230
Query: 64 MNVN 67
NVN
Sbjct: 231 QNVN 234
>gi|289706447|ref|ZP_06502805.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
gi|289556942|gb|EFD50275.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58]
Length = 513
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 15/150 (10%)
Query: 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
+RP + + EVR FGCQMNV+D+E + +L+S+GY+ +AD+++ T
Sbjct: 18 ARPHEGLTYEVR---------TFGCQMNVHDSERISGLLESTGYAPAAEDAQADLVVFNT 68
Query: 98 CAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVA 157
CA+RENA+ +++ L R++K H ++I V GC+A++ + ++ K +D+V
Sbjct: 69 CAVRENADNRLYGNLGNLRAVKDAHPG-----MQIAVGGCLAQKDQAAIQRKAPWVDVVF 123
Query: 158 GPDSYKDLPRLLALTYSNQTA-INVLLSLD 186
G + LP LL + N A I +L SL+
Sbjct: 124 GTHNIGSLPVLLERSRHNAEAEIEILESLE 153
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 168 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGEILAEVQALVDAGAVEVTLLGQNVN 224
>gi|319898348|ref|YP_004158441.1| hypothetical protein BARCL_0170 [Bartonella clarridgeiae 73]
gi|319402312|emb|CBI75851.1| bifunctional enzyme [Bartonella clarridgeiae 73]
Length = 460
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY P +AD+IL+ TC IRE A K++ L
Sbjct: 17 KVFIKTYGCQMNVYDSQRMNDSLSAQGYITTQTPNDADLILINTCHIREKAAEKLYSDLG 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ ++Q ++ PL IGV GC+A+ +L + +D + GP Y LP LL
Sbjct: 77 RLQIIRQ--ERTNDKPLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQVT 134
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + ++++ + + P
Sbjct: 135 QGKKVVETNYAVEDKFTHLPP 155
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
+ + +SAF+++ GCD CT+C+VP+TRG E SR ++ I +E L + E+
Sbjct: 161 VQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITNEAHQLIEAGVKEITLLGQ 220
Query: 65 NVN 67
NVN
Sbjct: 221 NVN 223
>gi|373252557|ref|ZP_09540675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nesterenkonia sp. F]
Length = 522
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ +GY + AD+++ TCA+RENA+ K++ L R+
Sbjct: 38 TFGCQMNVHDSERISGLLEDAGYVPADEEGTADLVVFNTCAVRENADNKLYGHLGQLRAS 97
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H+ ++I V GC+A++ + ++ E+ +D+V G + LP LL + NQ A
Sbjct: 98 KREHEG-----MQIAVGGCLAQKDQHTVQERAPWVDVVFGTHNIGSLPALLERSRHNQEA 152
Query: 179 -INVLLSLDETYADITP 194
+ +L SL ET+ P
Sbjct: 153 ELEILESL-ETFPSTLP 168
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S +VSI GC+N CT+CIVP RG+ER R IL EV+AL D EV NVN
Sbjct: 176 SGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEILAEVQALVDDGAVEVTLLGQNVN 232
>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
Length = 450
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S +Y + FGCQMN D+E++ +L GY P ADV+L+ TC+IRE AE KV+
Sbjct: 1 MSKNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L R +K R L +GV GC+A++ + + E+ +DL+ G LP +LA
Sbjct: 61 LLGQLR-----EEKARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLA 115
Query: 171 LTYSNQTAINVLLSLDETYA 190
T L+ ++A
Sbjct: 116 RLTQGMTTRETATDLEGSFA 135
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 13 FVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVV 72
FV+IM+GC+N C+YC+VP TRGRE SRP+ I++EV L + E+ NVN
Sbjct: 158 FVTIMQGCNNYCSYCVVPGTRGREISRPVADIMEEVEILVSQGVKEITLLGQNVNS---- 213
Query: 73 WSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132
Y K N + AD + +R+ A RLRF S H K L
Sbjct: 214 --------YGKTN--KVADTEVDFPQLLRQVALVNGLRRLRFTTS----HPKD----LSE 255
Query: 133 GVLGCMAE 140
++ C AE
Sbjct: 256 ALMRCFAE 263
>gi|389690677|ref|ZP_10179570.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microvirga sp. WSM3557]
gi|388588920|gb|EIM29209.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microvirga sp. WSM3557]
Length = 452
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D E + +L + GYS+ EAD++++ TC IRE A KV+ L
Sbjct: 3 KVFVKSYGCQMNVYDAERMADMLATEGYSETKAMEEADLVILNTCHIREKAAEKVYSELG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K+ ++ K+ V GC+A+ K +L + A+D+V GP +Y +LP LL
Sbjct: 63 RVRELKK-EREASGQETKVVVAGCVAQAEGKEILRRAPAVDVVVGPQNYHNLPALL 117
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
R VSAF++I GCD CT+C+VP+TRG E SRP+ ILDE L+D E+
Sbjct: 145 ARTRSRGVSAFLTIQEGCDKFCTFCVVPYTRGAEVSRPVAKILDEALRLADAGVRELTLI 204
Query: 63 QMNVNDTE------VVWS-------ILKSSGYSKV----NHPREADVILV 95
NVN VWS + + G +++ +HPR+ D L+
Sbjct: 205 GQNVNAYHGEGPDGSVWSLGRLLHRLAEVPGIARLRYTTSHPRDMDDELI 254
>gi|336325757|ref|YP_004605723.1| 2-methylthioadenine synthetase [Corynebacterium resistens DSM
45100]
gi|336101739|gb|AEI09559.1| 2-methylthioadenine synthetase [Corynebacterium resistens DSM
45100]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ +GY V + DV++ TCA+RENA+ +++ L +++
Sbjct: 12 TFGCQMNVHDSERLSGLLEDNGYIPVGEGQTPDVVVFNTCAVRENADNRLYGTLGQMKAV 71
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K H ++I V GCMA++ K+++++K +D+V G + LP LLA + N+ A
Sbjct: 72 KDSHPG-----MQIAVGGCMAQKDKQTVVKKAPWVDVVFGTHNLGSLPTLLARSAHNERA 126
Query: 179 -INVLLSLDETYADITP 194
+ ++ SL+E + + P
Sbjct: 127 EVEIVDSLEE-FPSVLP 142
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 146 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGEILAEVKALVDQGVSEVTLLGQNV 205
Query: 67 NDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
N V +S ++ R A L+ C E E RLRF
Sbjct: 206 NAYGVNFS------DPELERDRGAFAKLLRACGEIEGLE-----RLRF 242
>gi|148265155|ref|YP_001231861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
uraniireducens Rf4]
gi|229890547|sp|A5G670.1|MIAB_GEOUR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|146398655|gb|ABQ27288.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter uraniireducens
Rf4]
Length = 440
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y E FGCQMNV+D+E + ++LK GY +AD++++ TC++R AE KV++ L
Sbjct: 7 LYLETFGCQMNVSDSEKIAALLKGIGYFPTQDSSQADLVILNTCSVRAKAEEKVYNHLVQ 66
Query: 115 YRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y+ +K R P + +GV GC+A++ + LL LD+V G + LP L+
Sbjct: 67 YKGLK------RKKPGIILGVGGCVAQQEGERLLANVPHLDIVFGTHNLHLLPELVRAAE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ V +ET D+ P TDG
Sbjct: 121 KGERLAEVGFIDNETRLDLFPVDERTDG 148
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D VS FV++M+GC+N C+YCIVP+ RGRE SR IL EVR ++ EV NVN
Sbjct: 147 DGVSRFVTVMQGCENFCSYCIVPYVRGREISRRSADILGEVRGMAGNGVKEVTLLGQNVN 206
Query: 68 DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRT 127
LKSSG E I ++ RE + +R+RF S H K +
Sbjct: 207 SYG-----LKSSG--------EMSFIALL----REVSLIPGIERIRFTTS----HPKDFS 245
Query: 128 FPLKIGVLGCMAE 140
PL + C AE
Sbjct: 246 QPL----IDCFAE 254
>gi|402298046|ref|ZP_10817770.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
alcalophilus ATCC 27647]
gi|401726690|gb|EJS99906.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
alcalophilus ATCC 27647]
Length = 541
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Query: 33 RGRERS---RPMQSILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHP 87
RG+E RP I D+++ + K +GCQMNV+D+E + +L G+S+
Sbjct: 73 RGKEDVQVIRPDTLIPDDMKTIGQGKKFLIRTYGCQMNVHDSENMTGLLLEMGFSETEDT 132
Query: 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKS 145
EADVIL+ TCAIRENAE KV+ + +++KQ L +G+ GCM+ E +
Sbjct: 133 TEADVILLNTCAIRENAENKVFGEIGHLKTLKQ-----EKPELILGICGCMSQEENVVNR 187
Query: 146 LLEKEQALDLVAGPDSYKDLPRLL 169
+++K Q +DL+ G + LP LL
Sbjct: 188 IMKKHQHMDLIFGTHNIHRLPHLL 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y EV
Sbjct: 237 RARKGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIAEVRDLARQGYQEVTLLG 296
Query: 64 MNVN 67
NVN
Sbjct: 297 QNVN 300
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K + + FGCQMN ND+E + +LK+ GY + ++ EAD+I++ TC IRE + KV
Sbjct: 1 MSKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L Y+ +K+ + K I V GC+A+R L++K +D++ + LP L+
Sbjct: 61 HLGEYKKIKEKNPKAL-----IAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELIN 115
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ AI +L L + I V D + YV
Sbjct: 116 QAQAGYKAIAILDELPQDEDKIWEYPVERDNKYCAYV 152
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 17/103 (16%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
A+V+I++GCD CTYC+VP TRG+ERSR + SILDEV+ L D E+ NV
Sbjct: 150 AYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKRLVDDGVREIHLLGQNVTAWGK 209
Query: 69 --------TEVVWSILKSSGYSKV----NHPREA--DVILVMT 97
+E+++ + K G ++ HPR+ D+I M
Sbjct: 210 DFEKPIPFSELLYQVSKIDGVERIRFTTGHPRDLTDDIIEAMA 252
>gi|398828012|ref|ZP_10586214.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Phyllobacterium sp. YR531]
gi|398218730|gb|EJN05232.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Phyllobacterium sp. YR531]
Length = 473
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY + +GCQMNV D++ + L + GYS + +AD++L+ TC IRE A K++ L
Sbjct: 29 KVYVKTYGCQMNVYDSQRMADSLAAEGYSPTDTADDADLVLINTCHIREKASEKLYSALG 88
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK K L +GV GC+A+ + + +DLV GP +Y LP+ LA
Sbjct: 89 RLRKMKDARAKE-GRELTVGVAGCVAQAEGDEITRRAPVVDLVVGPQTYHRLPQALARVA 147
Query: 174 SNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 148 KGERVVETEYAIEDKF 163
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ IL E L+D E+ NVN
Sbjct: 178 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQILKEAEKLADAGVRELTLLGQNVNA 237
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 238 WHGEGPDGREWGLGELLYRLAEIPGIARLRYITSHPRDMDDALI 281
>gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus bv. 1 str. 9-941]
gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis biovar Abortus 2308]
gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus S19]
gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|376272127|ref|YP_005150705.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|423167886|ref|ZP_17154589.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|423169738|ref|ZP_17156413.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|423175272|ref|ZP_17161941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|423177878|ref|ZP_17164523.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|423179171|ref|ZP_17165812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|423182302|ref|ZP_17168939.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|423186756|ref|ZP_17173370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
gi|423190808|ref|ZP_17177416.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|75496027|sp|Q57AB1.1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123740938|sp|Q2YQS8.1|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890451|sp|B2S9E5.1|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown
function UPF0004:tRNA-i(6)A37 modification enzyme
MiaB:Elongator [Brucella melitensis biovar Abortus 2308]
gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19]
gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|363399733|gb|AEW16703.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|374535716|gb|EHR07237.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|374539635|gb|EHR11138.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|374543417|gb|EHR14900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|374549080|gb|EHR20526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|374552115|gb|EHR23544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|374552487|gb|EHR23915.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|374554578|gb|EHR25989.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|374557468|gb|EHR28864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
Length = 467
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RA + KV+ + +GCQMNV D++ + L + GY + P +AD++L+ TC IRE A K+
Sbjct: 19 RANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78
Query: 109 WD---RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+ RLR R + K L IGV GC+A+ + +L + +DLV GP +Y L
Sbjct: 79 YSALGRLRKMRDARAADGKE----LTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRL 134
Query: 166 PRLLALTYSNQTAINVLLSLDETY 189
P LA + + ++++ +
Sbjct: 135 PNALARVRGGEKVVETDYAIEDKF 158
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I+ E L+D E+ NVN
Sbjct: 174 VSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAW 233
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 234 HGEGEDGREWGLGELLFRLARIPGIARLRYTTSHPRDMDDSLI 276
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 43 SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
+I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAI
Sbjct: 54 TISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAI 113
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAG 158
RENAE KV+ L +++K+ L +GV GCM+ E + +L+K +D++ G
Sbjct: 114 RENAENKVFGELGHLKALKK-----NNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFG 168
Query: 159 PDSYKDLPRLLALTYSNQTAI 179
+ LP LL+ Y ++ +
Sbjct: 169 THNIHRLPELLSEAYLSKEMV 189
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|222147351|ref|YP_002548308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
vitis S4]
gi|221734341|gb|ACM35304.1| miaB protein [Agrobacterium vitis S4]
Length = 477
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A KV+ + +GCQMNV D+ + L + GY EA ++L+ TC IRE A KV+
Sbjct: 29 APQKKVFIKTYGCQMNVYDSSRMADALVAEGYQSTEDMEEASLVLLNTCHIREKAADKVY 88
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R MK+I + R IGV GC+A+ + ++ +E +D+V GP +Y LP+ L
Sbjct: 89 SALGRLREMKKI-RAARGEEFMIGVAGCVAQAEGEEIVRREPGVDVVVGPQTYHRLPQAL 147
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAVSTDGRR 203
+ ++ ++++ + + P G+R
Sbjct: 148 RRARGGERVVDTDYAVEDKFEHL-PDPTKIAGKR 180
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
++AF+++ GCD CT+C+VP+TRG E SRP+ +L E + L + E+ NVN
Sbjct: 183 ITAFLTVQEGCDKFCTFCVVPYTRGSEVSRPLAQLLGEAQRLVESGVREITLLGQNVNAW 242
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + + G +++ +HPR+ D L+
Sbjct: 243 HGKGPDGREMGLGDLLYKLAEIPGLARLRYTTSHPRDMDERLI 285
>gi|399036367|ref|ZP_10733472.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF122]
gi|398066026|gb|EJL57628.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF122]
Length = 474
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEVLEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSM-KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L R M K+ +K+ R F IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKKERNKEGREF--MIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALR 138
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVS 198
Q ++ +L++ + D P A S
Sbjct: 139 KAKEGQRIVDTEYALEDKF-DHLPIAES 165
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDT 69
V++F+++ GCD CT+C+VP+TRG E SR + I++E + L + E+ NVN
Sbjct: 173 VTSFLTVQEGCDKFCTFCVVPYTRGSEVSRSVSQIVEEAQKLVEGGVREITLLGQNVN-- 230
Query: 70 EVVWSILKSSG 80
W + ++G
Sbjct: 231 --AWHGVGANG 239
>gi|383809929|ref|ZP_09965441.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rothia aeria F0474]
gi|383447249|gb|EID50234.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rothia aeria F0474]
Length = 501
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L++SGY + E D+++ TCA+RENA +++ L S+
Sbjct: 21 TFGCQMNVHDSERMAGLLEASGYVRAAEGEEPDLVVFNTCAVRENASNRLYGHLGQLASV 80
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H+ ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 81 KRRHEG-----MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLERARHNHEA 135
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 136 QAELLESLEVFPSTLP 151
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 88/209 (42%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 159 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAVEVTLLGQNVNSYG 218
Query: 68 ----DTEVVWSILKS----SGYSKVN----HP------------READVILVMTCAIREN 103
D + +L++ G +V HP +V+ V+ ++
Sbjct: 219 VEFGDRQAFSKLLRACGDIEGLERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSG 278
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I +K R T + +G G E + +L EQA
Sbjct: 279 SDKVLKDMRRSYRSKKFLGILEKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQAR 338
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ +V+
Sbjct: 339 FSSAFTFQYSIRPGTPAATMENQIPKDVV 367
>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ ILK+ GYS + +ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPECL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S+ A+V+IM GCD CTYCIVPFTRG+ERSR + I++EVR L+ + Y E+
Sbjct: 207 KVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIINEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
haemolyticus JCSC1435]
gi|123734986|sp|Q4L5Z6.1|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ GY+ EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK+R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKNRPEAL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S A+V+IM GCD CTYCIVPFTRG+ERSR + I++EVR L+ Y E+
Sbjct: 207 KVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIEEVRGLARDGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + +I +E + + + K Y +GCQMN +DTEV+ I GY + P
Sbjct: 45 RGKEEVKYHKDFTIPEEFKGMGEGRKFYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPE 104
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + +++K L +GV GCM+ E + +
Sbjct: 105 DANVILLNTCAIRENAENKVFGEIGHLKALKM-----EKPDLLLGVCGCMSQEESVVNKI 159
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L++ Q +D++ G + LP +L Y ++ +
Sbjct: 160 LKQYQYVDMIFGTHNIHRLPNILHEAYMSKEMV 192
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 213 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVN 271
>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|350266015|ref|YP_004877322.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|349598902|gb|AEP86690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
Length = 452
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y E FGCQMN D+E++ ++ + Y + + P EAD I+V TC+IR A K + L
Sbjct: 7 LYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 66
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
YR +K+ R L I V GC+A++ ++LL+K LDLV GP + LP L+
Sbjct: 67 YRRLKK-----RRPELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELV 116
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 13 FVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
FV+IM+GC+N CTYC+VP TRGRE SR + I++EVR L+D EV NVN
Sbjct: 154 FVTIMQGCNNFCTYCVVPHTRGREVSRKPEDIINEVRHLADHGVREVTLLGQNVN 208
>gi|118618695|ref|YP_907027.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
ulcerans Agy99]
gi|229890570|sp|A0PT87.1|MIAB_MYCUA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|118570805|gb|ABL05556.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 532
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 8/135 (5%)
Query: 46 DEVRALSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
D+V +S + Y +GCQMNV+D+E + +L+++GY + +ADV++ TCA+RENA
Sbjct: 16 DDVEPMSARTYQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
+ K Y ++ + + RT P ++I V GC+A++ + +LL K +D+V G +
Sbjct: 76 DNK------LYGNLSHLAPRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIG 129
Query: 164 DLPRLLALTYSNQTA 178
LP LL N+ A
Sbjct: 130 SLPALLDRARHNRVA 144
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RG+E R IL EV++L D E+ NV
Sbjct: 164 ESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRSPADILAEVQSLVDTGVVEITLLGQNV 223
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 224 NAYGVSFA 231
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|374339750|ref|YP_005096486.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
gi|372101284|gb|AEX85188.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
Length = 450
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + FGCQMNVN++E++ IL+ G+ +P+EADVI++ +CA+RE AE K++ +
Sbjct: 2 KFYIKTFGCQMNVNESEIMTGILEKEGFEWTENPQEADVIILNSCAVREKAENKLYGAIG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
Y +K+ + L I V GC+AE+ K++++++ ++ V G +Y ++ + +
Sbjct: 62 SYGKLKK-----KKEDLIIAVGGCVAEKEKENIIQRFHEVNFVFGTRNYMNIKKFI 112
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+++I+ GC+ CTYCIVP+TR E+SRP++ I+ EV+ +D Y E+ NV+
Sbjct: 146 GWINIIYGCNKYCTYCIVPYTRHLEKSRPVEDIIKEVKYYNDNGYREITFLGQNVD 201
>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens FZB42]
gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|416124308|ref|ZP_11595304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|420176865|ref|ZP_14683259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|420179459|ref|ZP_14685750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|394251772|gb|EJD96848.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|394253663|gb|EJD98659.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
Length = 517
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|418411712|ref|ZP_12984978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
gi|410891295|gb|EKS39092.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|418634076|ref|ZP_13196474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|420189484|ref|ZP_14695458.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|420204215|ref|ZP_14709775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
gi|374838068|gb|EHS01625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|394262034|gb|EJE06819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|394274229|gb|EJE18654.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|115522235|ref|YP_779146.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisA53]
gi|122298059|sp|Q07V68.1|MIAB_RHOP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|115516182|gb|ABJ04166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisA53]
Length = 465
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + FGCQMNV D + + L G+ + +AD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSFGCQMNVYDAQRMVDALAPEGFVETQSADDADLVILNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKH-RTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R +KQ H R F +I V GC+A+ ++ ++ A+D+V GP SY LP LL
Sbjct: 66 KLRLLKQDAASHGRRF--EIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKA 123
Query: 173 YSNQTAINVLLSLDETYADITP 194
+ A+ +++ + + P
Sbjct: 124 RRDGRALETEFPIEDKFGVLPP 145
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAFV++ GCD C++C+VP+TRG E SRP+ ILD+V+ L D E+ NVN
Sbjct: 156 VSAFVTVQEGCDKFCSFCVVPYTRGAEMSRPVAKILDDVKRLIDNGVREITLIGQNVN 213
>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|418325516|ref|ZP_12936722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
gi|365228118|gb|EHM69303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|420187502|ref|ZP_14693522.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM039]
gi|394255944|gb|EJE00880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM039]
Length = 514
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus amyloliquefaciens DSM 7]
gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
Length = 509
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + L + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGLGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|27467889|ref|NP_764526.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis ATCC 12228]
gi|57866805|ref|YP_188442.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis RP62A]
gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646301|ref|ZP_12296162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|417658991|ref|ZP_12308604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|417909904|ref|ZP_12553637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|417910848|ref|ZP_12554564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|417913346|ref|ZP_12557013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|418605439|ref|ZP_13168764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|418607743|ref|ZP_13170966.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|418609881|ref|ZP_13173015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|418612172|ref|ZP_13175218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|418616672|ref|ZP_13179596.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|418622040|ref|ZP_13184796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|418624502|ref|ZP_13187177.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|418626753|ref|ZP_13189349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|418628490|ref|ZP_13191035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|418664683|ref|ZP_13226149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|419768123|ref|ZP_14294260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770912|ref|ZP_14296974.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|420163370|ref|ZP_14670117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|420165173|ref|ZP_14671877.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|420167650|ref|ZP_14674302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|420172708|ref|ZP_14679206.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|420182962|ref|ZP_14689095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|420193970|ref|ZP_14699799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|420197182|ref|ZP_14702906.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|420201994|ref|ZP_14707589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|420214227|ref|ZP_14719506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|420216059|ref|ZP_14721281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|420218841|ref|ZP_14723891.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|420221916|ref|ZP_14726841.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|420224778|ref|ZP_14729616.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|420227083|ref|ZP_14731856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|420229406|ref|ZP_14734112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|420231764|ref|ZP_14736409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|420234452|ref|ZP_14739015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|421607205|ref|ZP_16048451.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
gi|81674874|sp|Q5HPP8.1|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81843816|sp|Q8CSS3.1|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
RP62A]
gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|341652513|gb|EGS76301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|341655036|gb|EGS78772.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|341655628|gb|EGS79352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|374402536|gb|EHQ73561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|374403860|gb|EHQ74855.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|374406217|gb|EHQ77120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|374410129|gb|EHQ80890.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|374820054|gb|EHR84168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|374820750|gb|EHR84826.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|374827415|gb|EHR91277.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|374827731|gb|EHR91592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|374831297|gb|EHR95039.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|374837336|gb|EHS00902.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|383361044|gb|EID38427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362461|gb|EID39813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|394235059|gb|EJD80633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|394236340|gb|EJD81874.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|394237678|gb|EJD83164.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|394241385|gb|EJD86799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|394249425|gb|EJD94638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|394265989|gb|EJE10635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|394266668|gb|EJE11293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|394269967|gb|EJE14490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|394283592|gb|EJE27757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|394289947|gb|EJE33817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|394291586|gb|EJE35384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|394292509|gb|EJE36251.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|394294181|gb|EJE37867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|394297584|gb|EJE41181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|394299172|gb|EJE42723.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|394302306|gb|EJE45754.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|394304255|gb|EJE47662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|406656997|gb|EKC83390.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|407795674|ref|ZP_11142632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
gi|407020015|gb|EKE32729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
Length = 518
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 43 SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
+I +E+ + + K +GCQMN +DTEV+ I ++ GY EAD+IL+ TCAI
Sbjct: 63 TIPEEMEGVGEDRKYLIRTYGCQMNEHDTEVMAGIFETMGYEPTKQAEEADIILLNTCAI 122
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVA 157
RENAE KV+ + +S+K R P L +GV GCMA E + +L+K +D++
Sbjct: 123 RENAENKVFGEIGHLKSLK------RENPDLILGVCGCMAQEEGVVNRILQKHPFIDMIF 176
Query: 158 GPDSYKDLPRLL-ALTYSNQTAINV 181
G + +P LL +S + I+V
Sbjct: 177 GTHNIHKIPELLKEAMFSKEMVIDV 201
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V++M GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y EV NVN
Sbjct: 220 IKAWVNVMYGCDKFCTYCIVPYTRGKERSRLPEDIIQEVRHLAAQGYKEVTLLGQNVN 277
>gi|417656560|ref|ZP_12306243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLD 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|420169829|ref|ZP_14676407.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM070]
gi|420206387|ref|ZP_14711897.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM008]
gi|420209429|ref|ZP_14714866.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM003]
gi|394243129|gb|EJD88503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM070]
gi|394278226|gb|EJE22543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM008]
gi|394278876|gb|EJE23188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM003]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|418329422|ref|ZP_12940490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418615521|ref|ZP_13178463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|418630421|ref|ZP_13192903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|420174938|ref|ZP_14681384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|420191659|ref|ZP_14697570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|365230457|gb|EHM71552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374816960|gb|EHR81151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|374837962|gb|EHS01520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|394244471|gb|EJD89813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|394265810|gb|EJE10457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|94968901|ref|YP_590949.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Koribacter
versatilis Ellin345]
gi|123256543|sp|Q1IQH5.1|MIAB_ACIBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|94550951|gb|ABF40875.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Koribacter
versatilis Ellin345]
Length = 444
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E FGCQMN +D+E V L S GY +V +A +IL TC+IR+ AE KV+ RL +
Sbjct: 11 YIETFGCQMNFHDSEKVVGTLISQGYRQVETELDAGLILYNTCSIRDKAEQKVFHRLSEF 70
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R Q+ K+ + F VLGC+A++ + + E+ + LVAG SY++L +L S
Sbjct: 71 R---QLQKEGKRF----AVLGCVAQQEGEKIFERAPHVSLVAGSASYRNLAEMLVQIESG 123
Query: 176 QTAINVL 182
I L
Sbjct: 124 SQRITGL 130
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 14/92 (15%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND--- 68
+++I+ GCD C YC+VP+TRG+ERSR +S+L E R ++D + +V NVN
Sbjct: 152 GYITIIEGCDKFCAYCVVPYTRGKERSRSAESVLREARQMADAGFTDVQLLGQNVNSYHD 211
Query: 69 -------TEVVWSILKSSGYSKV----NHPRE 89
E++ ++ + +G +V +HPR+
Sbjct: 212 PSGTMTFAELLTAVGEITGIKRVRFTTSHPRD 243
>gi|420212653|ref|ZP_14718001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
gi|394279614|gb|EJE23920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ IL GY + P +A+VIL+ TCAIRENAE KV+ +
Sbjct: 70 KFYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIG 129
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ +K L +GV GCM+ E + LL++ Q +D+V G + LP +L
Sbjct: 130 HLKPLKM-----EKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNE 184
Query: 172 TYSNQTAINVLLSLDETYADITPKA 196
Y + + + S + + PK
Sbjct: 185 AYMAKEMVVEVWSKEGDVVENLPKV 209
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 208 KVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 267
Query: 64 MNVN 67
NVN
Sbjct: 268 QNVN 271
>gi|328545928|ref|YP_004306037.1| 2-methylthioadenine synthetase [Polymorphum gilvum SL003B-26A1]
gi|326415668|gb|ADZ72731.1| 2-methylthioadenine synthetase (MiaB-like) protein [Polymorphum
gilvum SL003B-26A1]
Length = 485
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ +GCQMNV D+ + +L GYS+ +AD++++ TC IRE A KV+ L
Sbjct: 24 KVFVRTYGCQMNVYDSGRMAEVLAPQGYSQTETLEDADLVILNTCHIREKAAEKVYSELG 83
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K + P IGV GC+A+ + + + +DLV GP SY LP LL
Sbjct: 84 RLRKIKD-ERARAGKPTLIGVAGCVAQAEGEEISRRAPVVDLVFGPQSYHRLPDLLVRAA 142
Query: 174 SNQTAINVLLSLDETYADITPKA 196
+ +DE + + ++
Sbjct: 143 GGAKVVETEFDIDEKFEHLAEQS 165
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ SAF+++ GCD CT+C+VP+TRG E SRP+ IL E L+ E+ NVN
Sbjct: 173 AASAFLTVQEGCDKFCTFCVVPYTRGAEVSRPLGQILQEAEGLAAAGVREITLLGQNVN 231
>gi|170781615|ref|YP_001709947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter
michiganensis subsp. sepedonicus]
gi|229890481|sp|B0RGZ1.1|MIAB_CLAMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|169156183|emb|CAQ01325.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 530
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 14/161 (8%)
Query: 41 MQSILDEVRALSDKV----YFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
M ++ + VRA V +EV +GCQMNV+D+E + L+++GY EAD+++
Sbjct: 1 MSTVAEHVRAAPSSVDRPRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEG-AEADIVV 59
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
+ TCA+RENA+ K++ L +K+ H+ ++I V GC+A++ + ++LEK +D
Sbjct: 60 INTCAVRENADNKLYGNLGHLAGVKRRHEG-----MQIAVGGCLAQKDRATVLEKAPWVD 114
Query: 155 LVAGPDSYKDLPRLLALTYSNQTA-INVLLSLDETYADITP 194
+V G + LP LL N A + +L SL ET+ P
Sbjct: 115 VVFGTHNMGALPTLLERARHNGEAQLEILESL-ETFPSTLP 154
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN-- 67
S +VSI GC+N CT+CIVP RG+E+ R IL E++AL D EV NVN
Sbjct: 161 ASGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAVEVTLLGQNVNSY 220
Query: 68 -----DTEVVWSILKSSG 80
D + +L+++G
Sbjct: 221 GVEFGDRQAFGKLLRAAG 238
>gi|13474614|ref|NP_106183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
loti MAFF303099]
gi|81778168|sp|Q98BK3.1|MIAB_RHILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|14025368|dbj|BAB51969.1| mlr5534 [Mesorhizobium loti MAFF303099]
Length = 450
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ + +GCQMNV D++ + L + GY+ + EAD++L+ TC IRE A KV+
Sbjct: 6 AKKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAEKVYSE 65
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK + L IGV GC+A+ ++ + A+DLV GP +Y LP +LA
Sbjct: 66 LGRIRDMKA-ERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLAR 124
Query: 172 TYSNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 125 VRGGEKIVETDYAIEDKF 142
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 157 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVN 215
>gi|374815351|ref|ZP_09719088.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema
primitia ZAS-1]
Length = 460
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+FE +GCQMN ++ + +L+ G+S V + AD+ ++ TC++R+ AE +V+ RL Y
Sbjct: 4 FFETYGCQMNSAESAALALVLRERGWSAVENGESADLTILNTCSVRQTAEQRVFGRLAQY 63
Query: 116 RSMKQIHKKHRTF--PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+S+K KK R+ P + V GCMAERL + L EK A+D V G S P +L
Sbjct: 64 QSLK---KKRRSLGQPFTLIVAGCMAERLGEGLKEKFDAVDYVMGTASRSVFPAIL 116
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L E +FV IM GC+N C+YCIVP+ RGRE SR SI +E+R LSD+ E+
Sbjct: 151 LEEGRFRSFVPIMHGCNNYCSYCIVPYVRGREISRSPASIAEEIRLLSDRGVREITLLGQ 210
Query: 65 NVN 67
NVN
Sbjct: 211 NVN 213
>gi|338972702|ref|ZP_08628073.1| tRNA-i(6)A37 methylthiotransferase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338233863|gb|EGP08982.1| tRNA-i(6)A37 methylthiotransferase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 466
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L GY + + +AD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLTPEGYVETANAEDADLVILNTCHIREKASEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R+ K ++ ++I V GC+A+ ++++ +D+V GP SY LP+LLA
Sbjct: 66 RLRAAKDDAARNGR-EMRIAVAGCVAQAEGSEIIQRAPVVDIVVGPQSYHHLPQLLAKAR 124
Query: 174 SNQTAINVLLSLDETYA 190
S+ AI +++ +A
Sbjct: 125 SDGRAIETEFPVEDKFA 141
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++ GCD CT+C+VP+TRG E SRP+ I+D+V+ L+D E+ NVN
Sbjct: 156 ISSFVTVQEGCDKFCTFCVVPYTRGMEVSRPVARIIDDVKRLADNGVREITLIGQNVN 213
>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
Length = 514
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ ILK+ GYS +ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S+ A+V+IM GCD CTYCIVPFTRG+ERSR + I++EVR L+ + Y E+
Sbjct: 207 KVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIINEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|414169640|ref|ZP_11425373.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
clevelandensis ATCC 49720]
gi|410885372|gb|EKS33187.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
clevelandensis ATCC 49720]
Length = 466
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L GY + + +AD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLTPEGYVETANAEDADLVILNTCHIREKASEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R+ K ++ ++I V GC+A+ ++++ +D+V GP SY LP+LLA
Sbjct: 66 RLRAAKDDAARNGR-EMRIAVAGCVAQAEGSEIIQRAPVVDIVVGPQSYHHLPQLLAKAR 124
Query: 174 SNQTAINVLLSLDETYA 190
S+ AI +++ +A
Sbjct: 125 SDGRAIETEFPVEDKFA 141
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++ GCD CT+C+VP+TRG E SRP+ I+D+V+ L+D E+ NVN
Sbjct: 156 ISSFVTVQEGCDKFCTFCVVPYTRGMEVSRPVARIIDDVKRLADNGVREITLIGQNVN 213
>gi|400976501|ref|ZP_10803732.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Salinibacterium sp. PAMC 21357]
Length = 511
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
++DE A +GCQMNV+D+E + L+++GY + ++ADV+++ TCA+REN
Sbjct: 1 MIDEKLANPRSYEVRTYGCQMNVHDSERLSGSLEAAGYIRATD-KQADVVVINTCAVREN 59
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
A+ K++ L S+K+ H+ ++I V GC+A++ K +LEK +D+V G +
Sbjct: 60 ADNKLYGNLGMLASVKKEHEG-----MQIAVGGCLAQKDKNVILEKAPWVDVVFGTHNMG 114
Query: 164 DLPRLLALTYSNQTA-INVLLSLD 186
LP LL N+ A + +L SL+
Sbjct: 115 SLPALLERARHNEEAQLEILESLE 138
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + SA+VSI GC+N CT+CIVP RG+E+ R IL EV+A+ D EV NV
Sbjct: 149 ESTHSAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVQAIVDDGAIEVTLLGQNV 208
Query: 67 N 67
N
Sbjct: 209 N 209
>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
Length = 509
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTYSNQTAI 179
+ LP LL+ Y ++ +
Sbjct: 170 HNIHRLPELLSEAYLSKEMV 189
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVN 268
>gi|398310791|ref|ZP_10514265.1| (dimethylallyl)adenosine tRNA methylthiotransferase, partial
[Bacillus mojavensis RO-H-1]
Length = 193
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I +E + + + K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEEFKGMGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKK-----NNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTY-SNQTAINV 181
+ LP LL+ Y S + I V
Sbjct: 170 HNIHRLPELLSEAYLSKEMVIEV 192
>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
BL2]
Length = 498
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 58 EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
+ +GCQMNV+D+E + +L +GY + +ADVI+ TCA+RENA+ R Y +
Sbjct: 21 KTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADN------RLYGN 74
Query: 118 MKQI-HKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176
+ Q+ H K R +I V GCMA++ + ++++K +D+V G + LP LL NQ
Sbjct: 75 LGQLAHVKERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQ 134
Query: 177 TA-INVLLSLD 186
A + +L SLD
Sbjct: 135 EAQVEILESLD 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 34/61 (55%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S +VSI GC+N CT+CIVP RG+E+ R IL EV AL EV NV
Sbjct: 156 ESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAEVEALVADGVVEVTLLGQNV 215
Query: 67 N 67
N
Sbjct: 216 N 216
>gi|417908008|ref|ZP_12551775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
gi|341595095|gb|EGS37773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
Length = 514
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ ILK+ GYS +ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S+ A+V+IM GCD CTYCIVPFTRG+ERSR + I++EVR L+ + Y E+
Sbjct: 207 KVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIINEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|289550913|ref|YP_003471817.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
HKU09-01]
gi|315658416|ref|ZP_07911288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis M23590]
gi|385784541|ref|YP_005760714.1| hypothetical protein SLUG_16020 [Staphylococcus lugdunensis
N920143]
gi|418414214|ref|ZP_12987430.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|418635639|ref|ZP_13198010.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis VCU139]
gi|289180445|gb|ADC87690.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
HKU09-01]
gi|315496745|gb|EFU85068.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis M23590]
gi|339894797|emb|CCB54093.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|374841668|gb|EHS05128.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis VCU139]
gi|410877852|gb|EKS25744.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 514
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ GY + +EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILEALGYQSTSDIQEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK+R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKNRPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYM 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+ EV+ L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIAEVKELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|77465601|ref|YP_355104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
sphaeroides 2.4.1]
gi|123757716|sp|Q3IW81.1|MIAB_RHOS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77390019|gb|ABA81203.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
2.4.1]
Length = 436
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDLG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LKIGV GC+A+ + +L++ +DLV GP SY LP +L T
Sbjct: 66 RLRPLKTAKPD-----LKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLERTE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++ ++ + D P+ +T G
Sbjct: 121 GGARVVDTDFPEEDKF-DHLPERKATRG 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 149 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARGLVERGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|325981206|ref|YP_004293608.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Nitrosomonas sp. AL212]
gi|325530725|gb|ADZ25446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Nitrosomonas sp. AL212]
Length = 442
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S+K+Y + FGCQMN D+E + +L ++ G N P EAD+IL TC++RE A+ KV+
Sbjct: 1 MSNKLYIKTFGCQMNEYDSEKMADVLHAAYGMESTNDPAEADMILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R H K R L IGV GC+A + K+++ + +D+V GP + LP+L+
Sbjct: 61 HDLGRVR-----HLKERNPDLLIGVGGCVASQEGKAIVSRAPFVDIVFGPQTLHRLPQLI 115
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ V+AFVSIM GC C++C+VP+TRG E SRP+ +L E+ L+ + E+ NVN
Sbjct: 145 EGVTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVLTEIAVLAAQGIKEITLLGQNVN 204
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTYSNQTAI 179
+ LP LL+ Y ++ +
Sbjct: 170 HNIHRLPELLSEAYLSKEMV 189
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVN 268
>gi|337264570|ref|YP_004608625.1| MiaB family RNA modification protein [Mesorhizobium opportunistum
WSM2075]
gi|336024880|gb|AEH84531.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum
WSM2075]
Length = 473
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ + +GCQMNV D++ + L + GY+ EAD++L+ TC IRE A KV+
Sbjct: 25 AKKVFIKTYGCQMNVYDSQRMADALAADGYTATGAIGEADLVLLNTCHIREKAAEKVYSE 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK + L IGV GC+A+ ++ + A+DLV GP +Y LP +LA
Sbjct: 85 LGRIRDMKA-ERASVGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLAR 143
Query: 172 TYSNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 144 VRGGEKIVETDYAIEDKF 161
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 176 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVN 234
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTYSNQTAI 179
+ LP LL+ Y ++ +
Sbjct: 170 HNIHRLPELLSEAYLSKEMV 189
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVN 268
>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
Length = 514
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ ILK+ GYS +ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S+ A+V+IM GCD CTYCIVPFTRG+ERSR + I++EVR L+ + Y E+
Sbjct: 207 KVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIINEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|307942734|ref|ZP_07658079.1| protein YleA [Roseibium sp. TrichSKD4]
gi|307773530|gb|EFO32746.1| protein YleA [Roseibium sp. TrichSKD4]
Length = 252
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ +GCQMNV D+E + +L GY + +AD++L+ TC IRE A KV+ L
Sbjct: 47 KVFVRTYGCQMNVYDSERMSDVLAREGYEPTDTVEDADLVLLNTCHIREKAAEKVYSELG 106
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K K + IGV GC+A+ + + +DLV GP SY LP LL
Sbjct: 107 RIRKVKDERAKSGKETV-IGVAGCVAQAEGAEISRRAPVVDLVVGPQSYHQLPDLLKKAK 165
Query: 174 SNQTAINVLLSLDETYADITPKA 196
+ + +D + ++ KA
Sbjct: 166 GGEKVVETEFDIDAKFDHLSAKA 188
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFG 61
SAF+++ GCD CT+C+VP+TRG E SR + I++E ++++ EV G
Sbjct: 198 SAFLTVQEGCDKFCTFCVVPYTRGAEVSRSVDQIVEE----AERMALEVCG 244
>gi|83941259|ref|ZP_00953721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
gi|83847079|gb|EAP84954.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36]
Length = 439
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L Y + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYSELG 64
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K+++ LKIGV GC+A+ ++ ++ A+DLV GP SY LP + A
Sbjct: 65 RLKPLKELNPD-----LKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEARVR 119
Query: 174 SNQTAINVLLSLDETYADITPKAVST 199
S +TA++ ++ + + + +T
Sbjct: 120 SGKTALDTDFPEEDKFEKLKGRGKAT 145
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VP+TRG E SRP +L E R L ++ EV NVN
Sbjct: 149 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPATRVLTEARELVERGVREVTLLGQNVN 205
>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
Length = 520
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 66 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 125
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 126 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 180
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+ LP LL+ Y ++ + + S + + PK
Sbjct: 181 HNIHRLPELLSEAYLSKEMVVEVWSKEGDVIENLPK 216
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 222 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVN 279
>gi|302338928|ref|YP_003804134.1| tRNA-i(6)A37 thiotransferase protein MiaB [Spirochaeta smaragdinae
DSM 11293]
gi|301636113|gb|ADK81540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae
DSM 11293]
Length = 440
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ + + E +GCQMN+ ++ + L++ G+S P EAD++L+ TCA+R+ AE ++W
Sbjct: 1 MTGRFFLETYGCQMNIAESNAMTLQLEALGWSAAERPEEADIVLLNTCAVRQTAEDRIWG 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
R+ +Y+ +K+ R F L V GCMAERL + ++++ +A+D V G
Sbjct: 61 RIGYYKFLKE----SRDFTLI--VTGCMAERLGEEIIKESKAVDYVLG 102
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L + + AF+ IM GC+N C+YCIVP+ RGRE SR + I E+ L +K E+
Sbjct: 141 LAKGAFKAFLPIMHGCNNFCSYCIVPYVRGREISRSPEDIFREIERLEEKGVREITLLGQ 200
Query: 65 NVN 67
NVN
Sbjct: 201 NVN 203
>gi|452910862|ref|ZP_21959539.1| tRNA-i(6)A37 methylthiotransferase [Kocuria palustris PEL]
gi|452834034|gb|EME36838.1| tRNA-i(6)A37 methylthiotransferase [Kocuria palustris PEL]
Length = 517
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 43 SILDEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
++ EV L +EV FGCQMNV+D+E + +L+++GY E D+I+ TCA+
Sbjct: 14 TLAPEVPVLEAPRSYEVRTFGCQMNVHDSERISGMLETAGYVPAQPEDEPDLIVFNTCAV 73
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RENA+ K++ L + + K R +++ V GC+A++ + +LE +D+V G
Sbjct: 74 RENADNKLYGNLS-----QLVGPKKRNERMQVAVGGCLAQKDQDRILETSPVVDVVFGTH 128
Query: 161 SYKDLPRLLALTYSNQTA-INVLLSLDETYADITP 194
+ LP LL N+ A I +L SL ET+ P
Sbjct: 129 NIGSLPTLLERARHNEDAQIEILESL-ETFPSALP 162
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ + + +VSI GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 166 DQAYAGWVSISVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQALVDQGAVEVTLLGQNV 225
Query: 67 N 67
N
Sbjct: 226 N 226
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 66 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 125
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 126 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 180
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+ LP LL+ Y ++ + + S + + PK
Sbjct: 181 HNIHRLPELLSEAYLSKEMVVEVWSKEGDVIENLPK 216
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 222 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVN 279
>gi|83944995|ref|ZP_00957361.1| hypothetical protein OA2633_10209 [Oceanicaulis sp. HTCC2633]
gi|83851777|gb|EAP89632.1| hypothetical protein OA2633_10209 [Oceanicaulis sp. HTCC2633]
Length = 468
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ + +GCQMNV D+E + +L GY + P AD++++ TC IRE A KV+ L
Sbjct: 17 RLFIKTYGCQMNVYDSERMRDVLAPLGYEPADEPDGADLVILNTCHIREKAAEKVYSELG 76
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K+ K P+ I V GC+A+ + + +DLV GP +Y LP L+A +
Sbjct: 77 RLKTLKE-EKASTGKPMTITVAGCVAQAEGAEIQRRAPVVDLVVGPQTYHKLPELIANVH 135
Query: 174 SNQ-TAINVLLSLDETYADITPKAVSTDG 201
+ A++ ++E + + DG
Sbjct: 136 RERGEALDTEFEVEEKFDALATPERHVDG 164
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D +AFV++ GCD CT+C+VP+TRG E SRP+ I+ EVRAL+ K EV NVN
Sbjct: 163 DGFTAFVTVQEGCDKFCTFCVVPYTRGAEWSRPVDQIVAEVRALAAKGVREVTLLGQNVN 222
>gi|83854736|ref|ZP_00948266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
NAS-14.1]
gi|83842579|gb|EAP81746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp.
NAS-14.1]
Length = 439
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L Y + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYSELG 64
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K+++ LKIGV GC+A+ ++ ++ A+DLV GP SY LP + A
Sbjct: 65 RLKPLKELNPD-----LKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEARVR 119
Query: 174 SNQTAINVLLSLDETYADITPKAVST 199
S +TA++ ++ + + + +T
Sbjct: 120 SGKTALDTDFPEEDKFEKLKGRGKAT 145
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VP+TRG E SRP +L E R L ++ EV NVN
Sbjct: 149 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPATRVLTEARELVERGVREVTLLGQNVN 205
>gi|300310058|ref|YP_003774150.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum
seropedicae SmR1]
gi|300072843|gb|ADJ62242.1| tRNA modifying 2-methylthioadenine synthetase protein
[Herbaspirillum seropedicae SmR1]
Length = 446
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ KV+ + FGCQMN D++ + +L +S G K + P EADVIL+ TC+IRE A+ KV+
Sbjct: 1 MQKKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R++K+ + L IGV GC+A + ++++++ +D+V GP + LP+++
Sbjct: 61 SDLGRLRALKKNNPA-----LLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMI 115
Query: 170 A-LTYSNQTAINVLLSLDETYADITPKAV 197
+ YS + +++ E + + P V
Sbjct: 116 SERRYSGRPQVDISFPEIEKFDHLPPARV 144
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +A+VSIM GC C+YC+VP+TRG E SR + +L EV L+D+ E+ NVN
Sbjct: 145 EGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFEDVLTEVAGLADQGVKEIMLLGQNVN 204
>gi|402490601|ref|ZP_10837390.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
CCGE 510]
gi|401810627|gb|EJT03000.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
CCGE 510]
Length = 469
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKK-RKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ +L++ +
Sbjct: 140 AKEGQRVVDTEYALEDKF 157
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L+D E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLADSGVREITLLGQNVN 230
>gi|126736946|ref|ZP_01752681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
SK209-2-6]
gi|126721531|gb|EBA18234.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp.
SK209-2-6]
Length = 440
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 66 RFKGLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKAR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ ++ ++ + + PKA
Sbjct: 121 EGEKVLDTDFPEEDKFEKLKSRPKA 145
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E + L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREAQELVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVM---TCA 99
+++W + K G ++ +HP + L+ TCA
Sbjct: 210 GAGANGDLTLAQLIWELDKIDGLERIRFTTSHPNDMQDDLIEAHGTCA 257
>gi|89069602|ref|ZP_01156941.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
HTCC2516]
gi|89044800|gb|EAR50900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus
HTCC2516]
Length = 437
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + EAD+IL+ TC IRE A KV+ L
Sbjct: 8 KLFIKTYGCQMNVYDSERMAEALGGRGYVETQVAEEADMILLNTCHIREKAAEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP + A
Sbjct: 68 RLKPLKAEKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPAMDAALA 122
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ A++ ++ ++ + P+A
Sbjct: 123 TGGKALDTDFPAEDKFSGLAARPRA 147
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP + ++DE RAL + E+ NVN
Sbjct: 152 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPAERVVDEARALVEAGVREITLLGQNVN 208
>gi|121997684|ref|YP_001002471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
SL1]
gi|229890553|sp|A1WVF7.1|MIAB_HALHL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|121589089|gb|ABM61669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila
SL1]
Length = 474
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 6/145 (4%)
Query: 35 RERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKS-SGYSKVNHPREADVI 93
R +SR + + + +S++VY E GCQMN D E + +L S +G +V+ P EAD++
Sbjct: 3 RNQSREARPNREVAQTVSERVYVETQGCQMNDYDAERLVDVLVSQAGARRVDRPEEADLL 62
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQAL 153
L+ TC++RE A+ KV+ +L +R KQ + + IGV GC+A + +L + +
Sbjct: 63 LLNTCSVREKAQEKVFSQLGRWRRYKQDNPT-----VLIGVGGCVASQEGAEILRRAPFV 117
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTA 178
DLV GP + LP++LA S +A
Sbjct: 118 DLVFGPQTLHRLPQMLARRRSGASA 142
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+A+VS+M GC C++C+VP+TRG E SRP+ +L EVR+L+++ EV NVN
Sbjct: 166 TAYVSVMEGCSKYCSFCVVPYTRGDEISRPVADVLAEVRSLAEQGVREVNLLGQNVN 222
>gi|78188191|ref|YP_378529.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
chlorochromatii CaD3]
gi|123770899|sp|Q3AU39.1|MIAB_CHLCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|78170390|gb|ABB27486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
chlorochromatii CaD3]
Length = 449
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
D Y FGCQMN D+ ++ +IL++ GY ++ +A ++L+ TCA+RE+A +V L
Sbjct: 7 DAFYIHTFGCQMNQADSGIMTAILQNEGYVAASNEADAGIVLLNTCAVREHATERVGHLL 66
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-L 171
+ K+ K L +GV GC+ + ++ L + +D +AGPD+Y+ LP L+ +
Sbjct: 67 QHLHGRKKRSKGR----LLVGVTGCIPQYEREVLFKNYPVVDFLAGPDTYRSLPLLIKQV 122
Query: 172 TYSNQTAINVLLSLD--ETYADITP 194
+ + A L+ + ETY I P
Sbjct: 123 QQAGKGATEAALAFNSAETYDGIEP 147
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S+SAFV +MRGC+N C YC+VP TRGRERS P ++L+EVR L++ Y E+ NVN
Sbjct: 151 SSMSAFVPVMRGCNNHCAYCVVPLTRGRERSHPKAAVLNEVRQLAEAGYREITLLGQNVN 210
Query: 68 D----------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
E++ ++ ++ +++ +HP++ LV T A N
Sbjct: 211 SYYDPLAQCNFAELLAAVSCAAPATRIRFTTSHPKDISEALVRTIAEHSN 260
>gi|420199076|ref|ZP_14704760.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
gi|394272762|gb|EJE17212.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
Length = 514
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GYS + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYSATSDIDEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|126464040|ref|YP_001045153.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
sphaeroides ATCC 17029]
gi|229890628|sp|A3PPW5.1|MIAB_RHOS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|126105851|gb|ABN78381.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
ATCC 17029]
Length = 436
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDLG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LKIGV GC+A+ + +L++ +DLV GP SY LP +L T
Sbjct: 66 RLRPLKTAKPD-----LKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++ ++ + D P+ +T G
Sbjct: 121 GGARVVDTDFPEEDKF-DHLPERKATRG 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 149 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARGLVERGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|325914746|ref|ZP_08177084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
ATCC 35937]
gi|325539023|gb|EGD10681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria
ATCC 35937]
Length = 489
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y + GCQMN D+ + +L +S G ++P +ADV+LV TC+IRE A+ KV+ +L
Sbjct: 37 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQL 96
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+R +K+ K P+ IGV GC+A + ++++++ +DLV GP + LP L+
Sbjct: 97 GRWRLLKESRAKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI 153
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D SAFVSIM GC C++C+VP+TRG E SRP + +L EV L+ + E+ NVN
Sbjct: 183 DGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVN 242
>gi|433771448|ref|YP_007301915.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Mesorhizobium australicum WSM2073]
gi|433663463|gb|AGB42539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Mesorhizobium australicum WSM2073]
Length = 473
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ + +GCQMNV D++ + L + GY+ + EAD++L+ TC IRE A KV+
Sbjct: 25 AKKVFVKTYGCQMNVYDSQRMTDALVADGYTATDAIGEADLVLLNTCHIREKAAEKVYSE 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK + + IGV GC+A+ ++ + A+DLV GP +Y LP +LA
Sbjct: 85 LGRIRDMKA-ERASAGREMLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLAR 143
Query: 172 TYSNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 144 VRGGEKIVETEYAIEDKF 161
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 176 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVN 234
>gi|221369608|ref|YP_002520704.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
sphaeroides KD131]
gi|221162660|gb|ACM03631.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
KD131]
Length = 436
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDLG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LKIGV GC+A+ + +L++ +DLV GP SY LP +L T
Sbjct: 66 RLRPLKTAKPD-----LKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++ ++ + D P+ +T G
Sbjct: 121 GGARVVDTDFPEEDKF-DHLPERKATRG 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 149 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARGLVERGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 511
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I GY+ EADV+L+ TCAIRENAE KV+ L
Sbjct: 65 KFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELG 124
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
F + K + + IGV GCM+ E + +L++ Q +D+V G + LP +L
Sbjct: 125 FL-----LKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHD 179
Query: 172 TYSNQTAI 179
Y ++ +
Sbjct: 180 AYMSKEMV 187
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 208 SIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRELAAQGYKEIMLLGQNVN 266
>gi|383501199|ref|YP_005414558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
australis str. Cutlack]
gi|378932210|gb|AFC70715.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
australis str. Cutlack]
Length = 445
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + EADVI++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KK I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDTRKKQELNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDNLPEQLYPQGASSF 155
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRNVEQVYREALQVVSGGAKEIMLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|433647300|ref|YP_007292302.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Mycobacterium smegmatis JS623]
gi|433297077|gb|AGB22897.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Mycobacterium smegmatis JS623]
Length = 555
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
+GCQMNV+D+E + +L+S+GY + +ADV++ TCA+RENA+ K++ L
Sbjct: 23 TYGCQMNVHDSERLAGLLESAGYERAADGADADVVVFNTCAVRENADNKLYGNLSHLAPR 82
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
KQ ++I V GC+A++ + ++L K +D+V G + LP LL N+TA
Sbjct: 83 KQADPN-----MQIAVGGCLAQKDRDTVLSKAPWVDVVFGTHNIGSLPTLLERARHNRTA 137
Query: 179 -INVLLSLDE 187
+ ++ +L+E
Sbjct: 138 QVEIVEALEE 147
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VS+ GC+N CT+CIVP RG+E R +L EV+AL D+ EV NV
Sbjct: 157 ESAYAAWVSVSVGCNNTCTFCIVPALRGKEVDRRPGDVLAEVQALVDQGVLEVTLLGQNV 216
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 217 NAYGVSFA 224
>gi|325920324|ref|ZP_08182261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
19865]
gi|325549186|gb|EGD20103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC
19865]
Length = 489
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y + GCQMN D+ + +L +S G ++P +ADV+LV TC+IRE A+ KV+ +L
Sbjct: 37 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQL 96
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+R +K+ K P+ IGV GC+A + ++++++ +DLV GP + LP L+
Sbjct: 97 GRWRLLKESRHKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI 153
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D SAFVSIM GC C++C+VP+TRG E SRP + +L EV L+ + E+ NVN
Sbjct: 183 DGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVN 242
>gi|222084693|ref|YP_002543222.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
radiobacter K84]
gi|398379631|ref|ZP_10537751.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. AP16]
gi|221722141|gb|ACM25297.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium
radiobacter K84]
gi|397722263|gb|EJK82807.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. AP16]
Length = 470
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 26 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 85
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 86 LGRLRDMKK-RKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALRR 144
Query: 172 TYSNQTAINVLLSLDETYADI-TPK 195
Q ++ +L++ + + TP+
Sbjct: 145 AKEGQRVVDTEYALEDKFEHLPTPE 169
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SR + I++E L D E+ NVN
Sbjct: 178 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVAQIVEEAEKLVDGGVREITLLGQNVN 235
>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisB18]
gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisB18]
Length = 473
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD--- 110
K++ + FGCQMNV D + + L G+ + + EAD++++ TC IRE A KV+
Sbjct: 6 KLHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSELG 65
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RLR + + + + I V GC+A+ ++ ++ A+D+V GP SY LP+LLA
Sbjct: 66 RLRVAKDEAALQGRR----MNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLA 121
Query: 171 LTYSNQTAINVLLSLDETYADITP 194
A+ +D+ + + P
Sbjct: 122 EAARGGRALETEFPVDDKFGFLPP 145
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+SAFV++ GCD CT+C+VP+TRG E SRP+ I+++VR L+D E+ NVN
Sbjct: 156 ISAFVTVQEGCDKFCTFCVVPYTRGAEVSRPVDKIVEDVRRLADNGVREITLIGQNVN 213
>gi|430001974|emb|CCF17754.1| MiaB/YleA family protein, RNA modifying enzyme [Rhizobium sp.]
Length = 470
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D+ + L GY + EAD+IL+ TC IRE A KV+ L
Sbjct: 22 KVFIKTYGCQMNVYDSVRMGDALAGDGYVPTDAMEEADLILLNTCHIREKAAEKVYSALG 81
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R MKQ + L IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 82 RLRDMKQARQADGQ-ELMIGVTGCVAQAEGEEILRRAPAVDVVVGPQTYHRLPEAL 136
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
R+ V+AF+++ GCD CT+C+VP+TRG E SRP+ I+DE R L+D E+
Sbjct: 165 ARIRARGVTAFLTVQEGCDKFCTFCVVPYTRGAEVSRPLHQIIDEARRLADAGVREITLL 224
Query: 63 QMNVN 67
NVN
Sbjct: 225 GQNVN 229
>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
Length = 511
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I GY+ EADV+L+ TCAIRENAE KV+ L
Sbjct: 65 KFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELG 124
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
F + K + + IGV GCM+ E + +L++ Q +D+V G + LP +L
Sbjct: 125 FL-----LKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHD 179
Query: 172 TYSNQTAI 179
Y ++ +
Sbjct: 180 AYMSKEMV 187
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
S+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 208 SIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRELAAQGYKEIMLLGQNVN 266
>gi|417110239|ref|ZP_11963574.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CNPAF512]
gi|327188593|gb|EGE55803.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CNPAF512]
Length = 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 34 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 93
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 94 LGRLREMKK-KKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 152
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 153 AQQGQRVVDTEYAIEDKF 170
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 186 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVN 243
>gi|218515353|ref|ZP_03512193.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli 8C-3]
Length = 452
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 4 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 64 LGRLREMKK-KKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 122
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 123 AQQGQRVVDTEYAIEDKF 140
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 156 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVN 213
>gi|304404333|ref|ZP_07385995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
curdlanolyticus YK9]
gi|304347311|gb|EFM13143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus
curdlanolyticus YK9]
Length = 530
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 33 RGRERSRPM--QSILDEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E+ + ++I D +R L ++ V FGCQMN +D+EV+ +L+ GY+ +
Sbjct: 63 RGKEQVQVHYEEAIPDALRTLGAGKHYMVYTFGCQMNEHDSEVMKGLLEQMGYTPTEDRK 122
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKS 145
ADVIL+ TCAIRENAE KV+ L + +K R P L +GV GCM+ E +
Sbjct: 123 LADVILLNTCAIRENAEDKVFGELGHLKGLK------RERPNLLLGVCGCMSQEESVVGR 176
Query: 146 LLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+L +DLV G + LP LL Y NQ + + S + + PK
Sbjct: 177 ILATHPFVDLVFGTHNIHRLPYLLQSAYFNQEMVVEVWSKEGDIIENLPK 226
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + A+V+IM GCD CTYCIVP+TRG+ERSR I+ EVR L+ + Y EV NVN
Sbjct: 229 EGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRLPADIIAEVRELARQGYKEVTLLGQNVN 288
>gi|190890046|ref|YP_001976588.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium etli
CIAT 652]
gi|229890624|sp|B3PZB6.1|MIAB_RHIE6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|190695325|gb|ACE89410.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CIAT 652]
Length = 469
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKK-KKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AQQGQRVVDTEYAIEDKF 157
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVN 230
>gi|319779782|ref|YP_004139258.1| MiaB family RNA modification protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317165670|gb|ADV09208.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 469
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GYS + EAD++L+ TC IRE A KV+ L
Sbjct: 27 KVFIKTYGCQMNVYDSQRMADALAADGYSATDAIGEADLVLLNTCHIREKAAEKVYSELG 86
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK + + +GV GC+A+ ++ + A+DLV GP +Y LP +LA
Sbjct: 87 RIRDMKA-ERALAGREMLVGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLARVR 145
Query: 174 SNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 146 GGEKIVETDYAIEDKF 161
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 176 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVN 234
>gi|254525438|ref|ZP_05137490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
str. MIT 9202]
gi|221536862|gb|EEE39315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
str. MIT 9202]
Length = 464
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ FGCQMN D+E + L+ GY+K + +AD++L TC IR+NAE KV+ L
Sbjct: 22 WITTFGCQMNKADSERMAGTLEKMGYTKADDELKADLVLYNTCTIRDNAEQKVYSFL--- 78
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
+Q +KH+ LK+ V GC+A++ +SLL + LDLV GP +L LL S
Sbjct: 79 --GRQAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDSG 136
Query: 176 QTAINVLLSLDETY--ADIT 193
N + + +ET+ DIT
Sbjct: 137 ----NQVAATEETFISEDIT 152
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S+ +V+I+ GC+ C+YC+VP RG+E+SR +I E++ L++ + E+ N+
Sbjct: 157 ESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRYPNAIKSEIQKLANDNFKEITLLGQNI 216
Query: 67 N 67
+
Sbjct: 217 D 217
>gi|424873377|ref|ZP_18297039.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393169078|gb|EJC69125.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 473
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 25 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 85 LGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 143
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 144 AKQGQRVVDTEYAIEDKF 161
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+
Sbjct: 171 RIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVESGVREITLLG 230
Query: 64 MNVNDTEVVWSILKSSG 80
NVN W S G
Sbjct: 231 QNVN----AWHGAGSQG 243
>gi|218510260|ref|ZP_03508138.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli Brasil 5]
Length = 450
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 34 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 93
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 94 LGRLREMKK-KKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 152
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 153 AQQGQRVVDTEYAIEDKF 170
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 186 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEAGVREITLLGQNVN 243
>gi|118590489|ref|ZP_01547891.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
gi|118436952|gb|EAV43591.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614]
Length = 491
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ +GCQMNV D+E + +L G+ + +AD++++ TC IRE A KV+ L
Sbjct: 32 KVFVRTYGCQMNVYDSERMTDVLAPEGFEATDDLEDADLVILNTCHIREKAAEKVYSELG 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ K + +GV GC+A+ + + + +DLV GP SY LP LL
Sbjct: 92 RIRKVKEERAKSGK-DMMVGVAGCVAQAEGEEISRRAPIVDLVVGPQSYHQLPSLLEKAR 150
Query: 174 SNQTAINVLLSLDETYADITPKA 196
+ + +D + ++ +A
Sbjct: 151 AGSKVVETEFDIDAKFNHLSERA 173
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD CT+C+VP+TRG E SR ++ I+ E ++ E+ NVN
Sbjct: 183 SAFLTVQEGCDKFCTFCVVPYTRGAEVSRSVEQIVSEAERMAAVGVREITLLGQNVN 239
>gi|357026537|ref|ZP_09088635.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
amorphae CCNWGS0123]
gi|355541567|gb|EHH10745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
amorphae CCNWGS0123]
Length = 469
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ + +GCQMNV D++ + L + GY + EAD++L+ TC IRE A KV+
Sbjct: 25 AKKVFVKTYGCQMNVYDSQRMTDALAADGYVATDAIAEADLVLLNTCHIREKAAEKVYSE 84
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK + L IGV GC+A+ ++ + A+DLV GP +Y LP +LA
Sbjct: 85 LGRIRDMKA-ERAAAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLAR 143
Query: 172 TYSNQTAINVLLSLDETY 189
+ + ++++ +
Sbjct: 144 VRGGEKIVETDYAVEDKF 161
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 176 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVN- 234
Query: 69 TEVVWSILKSSG 80
W L G
Sbjct: 235 ---AWHGLGEDG 243
>gi|332561273|ref|ZP_08415591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
sphaeroides WS8N]
gi|332275071|gb|EGJ20387.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter
sphaeroides WS8N]
Length = 436
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGARGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDLG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LKIGV GC+A+ + +L++ +DLV GP SY LP +L T
Sbjct: 66 RLRPLKTAKPD-----LKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++ ++ + D P+ +T G
Sbjct: 121 GGARVVDTDFPEEDKF-DHLPERKATRG 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 149 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARGLVERGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|154245754|ref|YP_001416712.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthobacter
autotrophicus Py2]
gi|154159839|gb|ABS67055.1| RNA modification enzyme, MiaB family [Xanthobacter autotrophicus
Py2]
Length = 496
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + FGCQMNV D+ + L G+ + P EAD++++ TC IRE A KV+ L
Sbjct: 32 KLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSELG 91
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R KQ I V GC+A+ ++ + +DLV GP SY LP LLA
Sbjct: 92 RLRKQKQEAGSDTM----IAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEAK 147
Query: 174 SNQTAINVLLSLDETY 189
+ + ++ ++ +
Sbjct: 148 AGKRVVDTEFPAEDKF 163
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFV++ GCD CT+C+VP+TRG E SRP+ I+DE L D+ E+ NVN
Sbjct: 180 AAFVTVQEGCDKFCTFCVVPYTRGAEVSRPVAKIMDEAARLVDQGVREISLIGQNVN 236
>gi|429208258|ref|ZP_19199511.1| tRNA-i(6)A37 methylthiotransferase [Rhodobacter sp. AKP1]
gi|428188859|gb|EKX57418.1| tRNA-i(6)A37 methylthiotransferase [Rhodobacter sp. AKP1]
Length = 436
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGARGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDLG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K LKIGV GC+A+ + +L++ +DLV GP SY LP +L T
Sbjct: 66 RLRPLKTAKPD-----LKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
++ ++ + D P+ +T G
Sbjct: 121 GGARVVDTDFPEEDKF-DHLPERKATRG 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E R L ++ E+ NVN
Sbjct: 149 AAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARGLVERGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|313892531|ref|ZP_07826118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
UPII 345-E]
gi|313118928|gb|EFR42133.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus
UPII 345-E]
Length = 447
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
++ ++ K Y +GCQMN +DTE + L++ GY+ N EAD++++ TC+IR+NA
Sbjct: 1 MESIKFTGKKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E KV+ ++ + +K+ KK +G+ GCMA+ KK L+E+ +D V GP D
Sbjct: 61 EEKVYGKIGEVKKLKE--KKDGVL---LGIAGCMAQESKKKLIERMPIIDFVIGPYHIHD 115
Query: 165 LPRLLALTYSNQTAINVLLS 184
L + +T N +V+L+
Sbjct: 116 LKDI--VTARNAEGAHVVLT 133
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V IM+GC+ CTYCIVP+ RGRE SRP+ +L EV+ L+ Y E+ NVN
Sbjct: 153 NIFAWVPIMQGCNKFCTYCIVPYVRGRETSRPISDVLKEVKQLAKDGYKEITLLGQNVN 211
>gi|311113252|ref|YP_003984474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
17931]
gi|310944746|gb|ADP41040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC
17931]
Length = 505
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+++GY + E D+++ TCA+RENA +++ L S+
Sbjct: 24 TFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYGHLGQLASV 83
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H+ ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 84 KRRHEG-----MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLERARHNHEA 138
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 139 QAELLESLEVFPSTLP 154
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 162 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYG 221
Query: 68 ----DTEVVWSILKSSGYSK--------VNHP------------READVILVMTCAIREN 103
D + +L++ G K HP +V+ V+ ++
Sbjct: 222 VEFGDRQAFSKLLRACGDIKGLERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSG 281
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I +K R T + +G G E + +L EQA
Sbjct: 282 SDKVLKDMRRSYRSKKFLGILEKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQAR 341
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ +V+
Sbjct: 342 FSSAFTFQYSIRPGTPAATMENQIPKDVV 370
>gi|329121178|ref|ZP_08249806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
DSM 19965]
gi|327470260|gb|EGF15721.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
DSM 19965]
Length = 447
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 45 LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
++ ++ K Y +GCQMN +DTE + L++ GY+ N EAD++++ TC+IR+NA
Sbjct: 1 MESIKFTGKKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNA 60
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD 164
E KV+ ++ + +K+ KK +G+ GCMA+ KK L+E+ +D V GP D
Sbjct: 61 EEKVYGKIGEVKKLKE--KKDGVL---LGIAGCMAQESKKKLIERMPIIDFVIGPYHIHD 115
Query: 165 LPRLLALTYSNQTAINVLLS 184
L + +T N +V+L+
Sbjct: 116 LKDI--VTARNAEGAHVVLT 133
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V IM+GC+ CTYCIVP+ RGRE SRP+ +L EV+ L+ Y E+ NVN
Sbjct: 153 NIFAWVPIMQGCNKFCTYCIVPYVRGRETSRPISDVLKEVKQLAKDGYKEITLLGQNVN 211
>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 31 FTRGRERSR-PMQ-----SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYS 82
R+RSR P+Q I ++++ + D K Y +GCQMN +DTEV+ I GY+
Sbjct: 39 LKEARKRSRKPVQYFKDFEIDEDLKGMGDGLKFYIRTYGCQMNEHDTEVMAGIFMQLGYT 98
Query: 83 KVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--E 140
+ADV+L+ TCAIRENAE KV+ + + +K + IGV GCM+ E
Sbjct: 99 PTETVEDADVVLLNTCAIRENAENKVFGEIGHLKPLKT-----EKPDMLIGVCGCMSQEE 153
Query: 141 RLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+ +L+K +D+V G + LP +L Y ++ + + S + + PK
Sbjct: 154 SVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKAMVVEVWSKEGDVIESLPK 208
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ K Y E+
Sbjct: 208 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRELAAKGYKEITLLG 267
Query: 64 MNVN 67
NVN
Sbjct: 268 QNVN 271
>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
Length = 509
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+++K+ L +GV GCM+ E + +L+K +D++ G + LP LL+
Sbjct: 127 HLKTLKK-----ENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181
Query: 172 TY-SNQTAINV 181
Y S + I V
Sbjct: 182 AYLSKEMVIEV 192
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKEITLLGQNVN 268
>gi|300744000|ref|ZP_07073020.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
gi|300380361|gb|EFJ76924.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567]
Length = 505
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+++GY + E D+++ TCA+RENA +++ L S+
Sbjct: 24 TFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYGHLGQLASV 83
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H+ ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 84 KRRHEG-----MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLERARHNHEA 138
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 139 QAELLESLEVFPSTLP 154
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 88/209 (42%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 162 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYG 221
Query: 68 ----DTEVVWSILKS----SGYSKVN----HP------------READVILVMTCAIREN 103
D + +L++ G +V HP +V+ V+ ++
Sbjct: 222 VEFGDRQAFSKLLRACGDIEGLERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSG 281
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I +K R T + +G G E + +L EQA
Sbjct: 282 SDKVLKDMRRSYRSKKFLGILEKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQAR 341
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ +++
Sbjct: 342 FSSAFTFQYSIRPGTPAATMENQIPKDIV 370
>gi|86356033|ref|YP_467925.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium etli
CFN 42]
gi|123724853|sp|Q2KD88.1|MIAB_RHIEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86280135|gb|ABC89198.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CFN 42]
Length = 469
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AKEGQRVVDTEYAIEDKF 157
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVN 230
>gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|384045292|ref|YP_005493309.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
megaterium WSH-002]
gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|345442983|gb|AEN88000.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
megaterium WSH-002]
Length = 520
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I GY + +A VIL+ TCAIRENAE KV+ L
Sbjct: 78 KFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELG 137
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+++K R P L IGV GCM+ E + +L+K Q +D++ G + LP +L
Sbjct: 138 HLKALK------RERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILN 191
Query: 171 LTY 173
Y
Sbjct: 192 EAY 194
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + SV A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 216 RARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLG 275
Query: 64 MNVN 67
NVN
Sbjct: 276 QNVN 279
>gi|404420786|ref|ZP_11002519.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
gi|403659654|gb|EJZ14284.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
Length = 529
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 36 ERSRPMQSILDEVRALSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
ERSR S D + S + Y +GCQMNV+D+E + +L+ +GY + EAD+++
Sbjct: 9 ERSREESSAHDPAQRRSARTYQVRTYGCQMNVHDSERLSGLLEDAGYLRAPDGAEADIVV 68
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
TCA+RENA+ K++ L KQ ++I V GC+A++ + S+L + +D
Sbjct: 69 FNTCAVRENADNKLYGNLSHLAPRKQSDPN-----MQIAVGGCLAQKDRDSVLRRAPWVD 123
Query: 155 LVAGPDSYKDLPRLLALTYSNQTA-INVLLSLDE 187
+V G + LP LL N+ A + ++ +L E
Sbjct: 124 VVFGTHNIGSLPALLERARHNRAAQVEIVEALQE 157
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RG+E R IL EV+AL+ + EV NV
Sbjct: 167 ESAYAAWVSISVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALASQGVLEVTLLGQNV 226
Query: 67 N 67
N
Sbjct: 227 N 227
>gi|323356750|ref|YP_004223146.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
gi|323273121|dbj|BAJ73266.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + L+S+GY + + EADVI++ TCA+R+NA GK++ L +S
Sbjct: 30 TFGCQMNVHDSERLSGSLESAGYVRADAGAEADVIVINTCAVRDNAAGKLYGTLGHLKSR 89
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K H ++I V GC+A+ K ++ +K +D+V G + LP +L N A
Sbjct: 90 KDAHAG-----MQIAVGGCLAQMDKDAVQQKAPWVDVVFGTHNMGSLPGMLERARHNGEA 144
Query: 179 -INVLLSLD 186
+ +L SL+
Sbjct: 145 ELEILESLE 153
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 8 DSV-SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
DSV S +VSI GC+N CT+CIVP RG+E+ R IL+E+R L D EV NV
Sbjct: 164 DSVHSGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILNEIRLLVDDGAIEVTLLGQNV 223
Query: 67 N 67
N
Sbjct: 224 N 224
>gi|299133384|ref|ZP_07026579.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
gi|298593521|gb|EFI53721.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2]
Length = 476
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L G+ + EAD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADANEADLVILNTCHIREKASEKVFSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R MK+ +KI V GC+A+ + + +D+V GP SY +LP+LLA
Sbjct: 66 RLRVMKE-EAAREGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKAR 124
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
+ I + + ++ + PK + R
Sbjct: 125 TGAPTIETEFPIQDKFSSLPAPKPAAIRAR 154
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++ GCD CT+C+VP+TRG E SRP+ +I+D+V+ L+D E+ NVN
Sbjct: 156 ISSFVTVQEGCDKFCTFCVVPYTRGMEVSRPVAAIVDDVKRLADNGVREITLIGQNVN 213
>gi|398836375|ref|ZP_10593712.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Herbaspirillum sp. YR522]
gi|398212009|gb|EJM98620.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Herbaspirillum sp. YR522]
Length = 446
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ KV+ + FGCQMN D++ + +L + G K +HP EADVIL+ TC++RE A+ KV+
Sbjct: 1 MQKKVFIKTFGCQMNEYDSDKMADVLNIAEGLVKTDHPEEADVILLNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ + L IGV GC+A + ++++++ +D+V GP + LP+++
Sbjct: 61 SDLGRLRELKKKNPD-----LLIGVGGCVASQEGEAIVKRAPFVDMVFGPQTLHRLPQMI 115
Query: 170 A-LTYSNQTAINVLLSLDETYADITPKAVS 198
Y+ + +++ E + + P V
Sbjct: 116 TERRYTGRAQVDISFPEIEKFDHLPPARVE 145
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +A+VSIM GC C+YC+VP+TRG E SR + +L EV L+ + E+ NVN
Sbjct: 145 EGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFEDVLTEVAGLAGQGVKEITLLGQNVN 204
>gi|229891225|sp|A7IGB2.2|MIAB_XANP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 470
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + FGCQMNV D+ + L G+ + P EAD++++ TC IRE A KV+ L
Sbjct: 6 KLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R KQ I V GC+A+ ++ + +DLV GP SY LP LLA
Sbjct: 66 RLRKQKQEAGSDTM----IAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEAK 121
Query: 174 SNQTAINVLLSLDETY 189
+ + ++ ++ +
Sbjct: 122 AGKRVVDTEFPAEDKF 137
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFV++ GCD CT+C+VP+TRG E SRP+ I+DE L D+ E+ NVN
Sbjct: 154 AAFVTVQEGCDKFCTFCVVPYTRGAEVSRPVAKIMDEAARLVDQGVREISLIGQNVN 210
>gi|420185401|ref|ZP_14691493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM040]
gi|394254387|gb|EJD99356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM040]
Length = 514
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GY+ + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILNALGYNATSDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D+V G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
Length = 509
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I GY + +A VIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+++K R P L IGV GCM+ E + +L+K Q +D++ G + LP +L
Sbjct: 127 HLKALK------RERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILN 180
Query: 171 LTY 173
Y
Sbjct: 181 EAY 183
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R + SV A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 205 RARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLG 264
Query: 64 MNVN 67
NVN
Sbjct: 265 QNVN 268
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+ +GY + ADVIL+ TC +RE AE KV+ ++ + +
Sbjct: 9 VYGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKI 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ + K L G+ GCMA++ +L+ + +D V G ++L R++A + +
Sbjct: 69 KEKNPK-----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSP 123
Query: 179 INVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI----------YVDGRWRRKLGQQMV 228
+ + D+T A+ P V+ G+ S +V + YV GR R + +++V
Sbjct: 124 VVDVTLADKTIAENLP--VARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIV 181
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V IM GC+N CTYCIVP+ RGRERSR + I+ EVR + Y EV NVN
Sbjct: 147 SAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVAEGYTEVTLLGQNVN 203
>gi|410447060|ref|ZP_11301162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [SAR86 cluster bacterium
SAR86E]
gi|409980047|gb|EKO36799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [SAR86 cluster bacterium
SAR86E]
Length = 443
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 8/150 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKS-SGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ K+Y + +GCQMN D++ IL+ + +P EAD+IL+ TC+IRE AE KV+
Sbjct: 1 MGKKLYIKTYGCQMNEYDSQKTLEILRQDPSIEETKNPNEADIILLNTCSIREKAEEKVY 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L +K+I+ + LKIGV GC+A + K++ ++ +DL+ GP + +P L+
Sbjct: 61 SELGRLNKLKKINPQ-----LKIGVGGCVATQEGKNIYKRAPFVDLIFGPQTIHKVPSLI 115
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAVST 199
+ A++V ++E + D PK +T
Sbjct: 116 K-EENKINAVDVSFPIEEKF-DSLPKPDAT 143
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VS+FVSIM GC C++C+VP+TRG E SR + I DEV L ++ E+ NVN
Sbjct: 145 VSSFVSIMEGCSKYCSFCVVPYTRGDEVSRKPEQIFDEVARLVEQGVSEIVFVGQNVN 202
>gi|183981993|ref|YP_001850284.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
marinum M]
gi|229890404|sp|B2HL08.1|MIAB2_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB 2; AltName: Full=tRNA-i(6)A37 methylthiotransferase
2
gi|183175319|gb|ACC40429.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 532
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 46 DEVRALSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
D+ +S + Y +GCQMNV+D+E + +L+++GY + +ADV++ TCA+RENA
Sbjct: 16 DDAEPMSARTYQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENA 75
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
+ K Y ++ + + RT P ++I V GC+A++ + +LL K +D+V G +
Sbjct: 76 DNK------LYGNLSHLAPRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIG 129
Query: 164 DLPRLLALTYSNQTA 178
LP LL N+ A
Sbjct: 130 SLPALLDRARHNRVA 144
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RG+E R IL EV++L D E+ NV
Sbjct: 164 ESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRSPADILAEVQSLVDTGVVEITLLGQNV 223
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 224 NAYGVSFA 231
>gi|357386415|ref|YP_004901139.1| tRNA-i(6)A37 methylthiotransferase [Pelagibacterium halotolerans
B2]
gi|351595052|gb|AEQ53389.1| tRNA-i(6)A37 methylthiotransferase [Pelagibacterium halotolerans
B2]
Length = 461
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD- 110
+ KV+ + +GCQMNV D++ + L GY+ + EAD++L+ TC IRE A KV+
Sbjct: 11 AKKVFIKTYGCQMNVYDSDRMTDALAPHGYTPTSEMGEADLVLLNTCHIREKAAEKVYSE 70
Query: 111 --RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
R+R +R+ + K + IGV GC+A+ + ++ + A+DLV GP SY LP L
Sbjct: 71 LGRIRDFRNERAPGAKK----MLIGVAGCVAQAEGEEIMARAPAVDLVFGPQSYHRLPEL 126
Query: 169 LA 170
L+
Sbjct: 127 LS 128
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++AF+++ GCD C++C+VP+TRG E SRP+ +L E R L+D E+ NVN
Sbjct: 162 LTAFLTVQEGCDKFCSFCVVPYTRGAEVSRPVAQVLAEARGLADAGVREITLLGQNVN 219
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 9/140 (6%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ R + D K Y +GCQMN +DTEV+ I + GY ++ +ADVIL+ TCAIR
Sbjct: 56 IDEKFRGMGDNKKFYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIR 115
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L + H K L IGV GCM+ E + +L+ +D++ G
Sbjct: 116 ENAENKVFGELGHLK-----HLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGT 170
Query: 160 DSYKDLPRLLALTYSNQTAI 179
+ LP +L Y ++ +
Sbjct: 171 HNIHRLPNILNEAYMSKAMV 190
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y EV NVN
Sbjct: 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRHLAAQGYQEVTLLGQNVN 269
>gi|424897989|ref|ZP_18321563.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182216|gb|EJC82255.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 469
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKK-RKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AKEGQRVVDTEYAIEDKF 157
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVN 230
>gi|424888953|ref|ZP_18312556.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174502|gb|EJC74546.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 469
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKK-RKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AKEGQRVVDTEYAIEDKF 157
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVN 230
>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
Length = 514
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + +I +E R + + K Y +GCQMN +DTEV+ I + GY +
Sbjct: 45 RGKEEVKYHNDFAIPEEFRGMGEGRKFYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTE 104
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ L +++K + K L IGV GCM+ E + +
Sbjct: 105 DANVILLNTCAIRENAENKVFGELGHLKALK-LEKPD----LLIGVCGCMSQEESVVNKI 159
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 160 LKTYQQVDMIFGTHNIHRLPNILHEAYMSKEMV 192
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVPFTRG+ERSR + I+ EVR L+ + Y EV NVN
Sbjct: 214 IKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQEVRQLAAQGYQEVTLLGQNVN 271
>gi|146279874|ref|YP_001170032.1| hypothetical protein Rsph17025_3872 [Rhodobacter sphaeroides ATCC
17025]
gi|229890629|sp|A4WZB3.1|MIAB_RHOS5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145558115|gb|ABP72727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides
ATCC 17025]
Length = 436
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S K++ + +GCQMNV D+E + L + GY EAD++L+ TC IRE A KV+
Sbjct: 4 SRKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSD 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R +K LKIGV GC+A+ + +L + +DLV GP SY LP +L
Sbjct: 64 LGRLRPLKVARPD-----LKIGVAGCVAQAEGEEILRRMPLVDLVVGPQSYHRLPDMLER 118
Query: 172 TYSNQTAINV 181
T I+
Sbjct: 119 TEGGARVIDT 128
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD C +C+VP+TRG E SRP ++ E RAL +K E+ NVN
Sbjct: 149 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPFARLMAEARALVEKGVREITLLGQNVN--- 205
Query: 71 VVWS 74
WS
Sbjct: 206 -AWS 208
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + I ++ R + + K Y +GCQMN +DTEV+ I + GY +
Sbjct: 42 RGKEEVKYHNDFKISEQFRGMGEGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTE 101
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + +++K+ + L +GV GCM+ E + +
Sbjct: 102 DANVILLNTCAIRENAENKVFGEIGHLKALKKDNPD-----LILGVCGCMSQEESVVNRI 156
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINV 181
L+K +DL+ G + LP LL+ Y S + I V
Sbjct: 157 LKKHPFVDLIFGTHNIHRLPELLSEAYLSKEMVIEV 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 211 IKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLAAEGYKEITLLGQNVN 268
>gi|319943047|ref|ZP_08017330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
51599]
gi|319743589|gb|EFV95993.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
51599]
Length = 473
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSIL-KSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K+Y FGCQMN D+E + +L ++ G + P EAD++L TC+IRE A+ KV+
Sbjct: 1 MSRKLYLRTFGCQMNSYDSERMADLLAETEGAELTDDPNEADIVLFNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L ++R+MK + L IGV GC+A + ++++ + +D+V GP + LP L+
Sbjct: 61 SDLGYFRAMKAARPE-----LIIGVGGCVASQEGEAIVSRAPFVDVVFGPQTLHRLPELI 115
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIM GC C++C+VP+TRG E SRP + +L +V L+++ EV NVN
Sbjct: 147 ASAFVSIMEGCSKYCSFCVVPYTRGEEISRPFEDVLSDVITLAEQGVKEVTLLGQNVN 204
>gi|415949146|ref|ZP_11556844.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Herbaspirillum
frisingense GSF30]
gi|407757786|gb|EKF67707.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Herbaspirillum
frisingense GSF30]
Length = 446
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ KV+ + FGCQMN D++ + +L +S G K + P EADVIL+ TC+IRE A+ KV+
Sbjct: 1 MQKKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R++K+ + L IGV GC+A + +++++ +D+V GP + LP+++
Sbjct: 61 SDLGRLRALKKDNPD-----LLIGVGGCVASQEGDAIIKRAPFVDMVFGPQTLHRLPQMI 115
Query: 170 A-LTYSNQTAINVLLSLDETYADITPKAV 197
+ YS + +++ E + + P V
Sbjct: 116 SERRYSGRPQVDISFPEIEKFDHLPPARV 144
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ SA+VSIM GC C+YC+VP+TRG E SR + +L EV L+D+ E+ NVN
Sbjct: 145 EGASAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFEDVLTEVAGLADQGVKEIMLLGQNVN 204
>gi|307718683|ref|YP_003874215.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
6192]
gi|306532408|gb|ADN01942.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM
6192]
Length = 448
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ E +GCQMN ++E + L+ +G+ + + P EADV+++ TCA+R+ AE ++ RL +Y
Sbjct: 5 WVETYGCQMNKAESEALIRDLEEAGWGRASAPDEADVVVLNTCAVRQTAEERIAGRLGYY 64
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R + KKH F L + +GCMAER+K+ +LE +D+V G K RLL
Sbjct: 65 RYL----KKHGRFVLVL--MGCMAERMKEEVLEAFPHVDVVVGTFQKKSFVRLL 112
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEV 71
AFV IM GC+N C+YCIVP+ RGRE SR I +E+ AL +K E+ NVN
Sbjct: 147 AFVPIMHGCNNFCSYCIVPYVRGREVSRHPSEIFEEIEALLEKGVKEITLLGQNVNSYRF 206
Query: 72 VWS 74
W
Sbjct: 207 TWE 209
>gi|67459670|ref|YP_247294.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
felis URRWXCal2]
gi|75535934|sp|Q4UK06.1|MIAB_RICFE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|67005203|gb|AAY62129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis
URRWXCal2]
Length = 445
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + +ADVI+++TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEDADVIILITCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KK I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFSRAPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDNLPEQLYPQGASSF 155
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRNVEQVYREALKVVSSGAKEITLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|344199152|ref|YP_004783478.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Acidithiobacillus ferrivorans SS3]
gi|343774596|gb|AEM47152.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Acidithiobacillus ferrivorans SS3]
Length = 451
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+Y + +GCQMN D+E + +L S G VN P ADV+L+ TC+IRE AE KV+ +L
Sbjct: 4 LYIKTYGCQMNEYDSERMADVLAVSHGLHLVNDPLLADVLLLNTCSIREKAEDKVFTQLG 63
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALT 172
F+R +K+ R L IGV GC+A + + L + +DLV GP + LP LL A
Sbjct: 64 FWRPLKE-----RRPELVIGVGGCVASQEGERLRRRAPYVDLVFGPQTLHRLPDLLDACL 118
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
+ ++V + E + D P+ DG
Sbjct: 119 AERRPQVDVAFPMLEKF-DHLPQRPGRDG 146
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R D +AFV+I GCD CT+C+VP TRGRE SRPM IL E R L D+ E+
Sbjct: 141 RPGRDGATAFVTIQEGCDKFCTFCVVPHTRGREYSRPMPDILRETRTLVDQGVREITLLG 200
Query: 64 MNVNDTEVVWSILKSSGYSKV 84
NVN ++ G + +
Sbjct: 201 QNVNAYRGATGLVGEGGLADL 221
>gi|424915813|ref|ZP_18339177.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851989|gb|EJB04510.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 469
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKK-RKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AKQGQRVVDTDYAIEDKF 157
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIIEEAEKLVEGGVREITLLGQNVN 230
>gi|86742200|ref|YP_482600.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia sp.
CcI3]
gi|123737135|sp|Q2J771.1|MIAB_FRASC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86569062|gb|ABD12871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Frankia sp. CcI3]
Length = 540
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 60 FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMK 119
FGCQMNV+D+E + +L+S+GYS V+ EADV++ TCA+RENA+ +++ L +K
Sbjct: 11 FGCQMNVHDSERLCGLLESAGYSPVDPGGEADVVVFNTCAVRENADNRLYGNLGQLVPVK 70
Query: 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
+ H ++I V GC+A++ + ++L++ +D+V G + LP LL N A
Sbjct: 71 KGHPG-----MQIAVGGCLAQKDRAAILDRAPWVDVVFGTHNLHRLPVLLERARHNAAA 124
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+VSI GCDN CT+CIVP RGRER R +L EV AL + E+ NVN
Sbjct: 148 SAWVSISVGCDNTCTFCIVPSLRGRERDRRPGDVLAEVEALVAEGALEITLLGQNVN 204
>gi|294085157|ref|YP_003551917.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664732|gb|ADE39833.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 451
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ K++ + +GCQMNV D++ + +L GY+ + P AD++++ TC IRE A KV+
Sbjct: 1 MTKKLFIKTYGCQMNVYDSDRMTDVLAPLGYAPIETPDGADMVILNTCHIREKASEKVFS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L R MK+ + + + I V GC+A+ + + +D+V GP +Y LP L+A
Sbjct: 61 ELGRLRMMKEKARDQQGRAVTIAVAGCVAQAEGAEITRRAPWVDIVVGPQTYHRLPELIA 120
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+S+ GCD C +C+VP+TRG E SRP +L E L + E+ NVN
Sbjct: 154 AAFLSVQEGCDKFCAFCVVPYTRGAEYSRPAADVLAEATRLVGRGTREITLLGQNVN 210
>gi|119358129|ref|YP_912773.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
phaeobacteroides DSM 266]
gi|229890478|sp|A1BIX2.1|MIAB_CHLPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|119355478|gb|ABL66349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium
phaeobacteroides DSM 266]
Length = 442
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S++AFV I+RGC+NMC +C+VPFTRGRERS P +S+LDEVRAL+D E+ NVN
Sbjct: 146 SLNAFVPIIRGCNNMCAFCVVPFTRGRERSHPFESVLDEVRALADDGCREITLLGQNVNS 205
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
+ ++ ++ + + +++ +HP++ LV T A+R N
Sbjct: 206 YHDPASGADFSRLLDAVSREAPETRIRFTTSHPKDMSHSLVETMALRPN 254
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN D+ ++ ++L+ GY + EA +I++ TCA+RENA ++ L+
Sbjct: 7 KFYIHTFGCQMNQADSGIITALLEKEGYQQAASEEEAGIIMLNTCAVRENAVERISHYLQ 66
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ K R P L +G+ GC+ + ++ L +D +AGPD+Y+ LP L+A
Sbjct: 67 HVKGFK------RKCPELIVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPALIAEA 120
Query: 173 YSNQTA 178
+++A
Sbjct: 121 GDSRSA 126
>gi|441518630|ref|ZP_21000345.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
hirsuta DSM 44140 = NBRC 16056]
gi|441454444|dbj|GAC58306.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
hirsuta DSM 44140 = NBRC 16056]
Length = 516
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 60 FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMK 119
+GCQMNV+D+E + +L+ +GY + +AD+++ TCAIRENA+ K++ L MK
Sbjct: 25 YGCQMNVHDSERIAGLLEDAGYVRAEAENDADLVVFNTCAIRENADNKLYGNLSHLVPMK 84
Query: 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA- 178
+ R ++I V GC+A++ K ++LEK +D+V G + LP LL N+ A
Sbjct: 85 K-----RRPGMQIAVGGCLAQKDKDTVLEKAPWVDVVFGTHNIGSLPVLLERARHNEAAQ 139
Query: 179 INVLLSLD 186
+ ++ SL+
Sbjct: 140 VEIVESLE 147
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R +L EV+AL D+ EV NV
Sbjct: 158 ESAYAGWVSVSVGCNNTCTFCIVPALRGKEVDRRPGDVLAEVQALVDQGVLEVTLLGQNV 217
Query: 67 N 67
N
Sbjct: 218 N 218
>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
sp. Grbi]
Length = 526
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K +GCQMN +DTEV+ IL GY N ++AD+IL+ TCAIRENAE KV+ +
Sbjct: 84 KFMIRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIG 143
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+++K R P L +GV GCM+ E++ +++K +DL+ G + LP L+
Sbjct: 144 HLKALK------REKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVK 197
Query: 171 LTYSNQTAINVLLSLDETYADITPKA 196
+ + + S + + PKA
Sbjct: 198 EAMFGKEKVVEVWSKEGDIIENLPKA 223
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V A+V+IM GCD CTYCIVP TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 228 VKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEVRHLTAQGYKEITLLGQNVN 285
>gi|417653280|ref|ZP_12303014.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21193]
gi|417797253|ref|ZP_12444451.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21305]
gi|448743364|ref|ZP_21725273.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
KT/Y21]
gi|329733662|gb|EGG69990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21193]
gi|334267301|gb|EGL85765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21305]
gi|445563293|gb|ELY19455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
KT/Y21]
Length = 514
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ ILK+ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILKALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|209547631|ref|YP_002279548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|229890625|sp|B5ZMY1.1|MIAB_RHILW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|209533387|gb|ACI53322.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 469
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLRDMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 140 AKEGQRVVDTDYAIEDKF 157
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVEEAEKLVEGGVREITLLGQNVN 230
>gi|409435790|ref|ZP_11262998.1| isopentenyl-adenosine A37 tRNA methylthiolase [Rhizobium
mesoamericanum STM3625]
gi|408752548|emb|CCM74145.1| isopentenyl-adenosine A37 tRNA methylthiolase [Rhizobium
mesoamericanum STM3625]
Length = 469
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEVMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSM-KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L R M K+ +K+ R F IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKKERNKEGREF--MIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALR 138
Query: 171 LTYSNQTAINVLLSLDETYADI 192
++ +L++ + +
Sbjct: 139 KAKDGHRIVDTEYALEDKFEHL 160
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V++F+++ GCD CT+C+VP+TRG E SRP+ I++E + L + E+ NVN
Sbjct: 172 GVTSFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAQKLVEGGVREITLLGQNVN 230
>gi|404492825|ref|YP_006716931.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
carbinolicus DSM 2380]
gi|123756643|sp|Q3A594.1|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77544901|gb|ABA88463.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Pelobacter carbinolicus DSM 2380]
Length = 438
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 5/103 (4%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E FGCQMNV D+E + +++S GYS V+ P +A++I++ TC+IR AE KV+ L +
Sbjct: 5 YLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHLGRF 64
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
+ +KQ R L I V GC+A++ + +LEK LD+V G
Sbjct: 65 KPLKQ-----RRPELIIAVCGCVAQQEGQRMLEKVPYLDIVCG 102
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VS FV++++GCDN C+YCIVP RGRE SRP +L+EVR L ++ E+ NVN
Sbjct: 146 EVSRFVTVIQGCDNFCSYCIVPHVRGREVSRPSAEVLEEVRLLVEQGAREITLIGQNVN 204
>gi|254295429|ref|YP_003061452.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hirschia
baltica ATCC 49814]
gi|254043960|gb|ACT60755.1| RNA modification enzyme, MiaB family [Hirschia baltica ATCC 49814]
Length = 455
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D++ + +LK GY+ + P AD++++ TC IRE A KV+ L
Sbjct: 12 KLFIKTYGCQMNVYDSDRMKDVLKPLGYAPTDAPEGADLVVLNTCHIREKATEKVFSELG 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+ MK T I V GC+A+ ++ ++ A+DLV GP SY LP ++A
Sbjct: 72 QLKRMKADTGGKMT----IAVAGCVAQAEGAEIMRRQPAVDLVLGPQSYHKLPEMIA 124
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ ++ + D +SA VSI GCD CT+C+VP+TRG E SR + +I+ EVR L+ + E+
Sbjct: 147 LPIKRDADGMSALVSIQEGCDKFCTFCVVPYTRGAEFSRNVDAIVAEVRGLAAQGVKEIT 206
Query: 61 GCQMNVN 67
NVN
Sbjct: 207 LLGQNVN 213
>gi|157827747|ref|YP_001496811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
bellii OSU 85-389]
gi|229890631|sp|A8GY24.1|MIAB_RICB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157803051|gb|ABV79774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU
85-389]
Length = 446
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + EADVI++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KK I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLPEQLYPQGASSF 155
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRNVEQVYREALKVVSSGAKEIMLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|407777910|ref|ZP_11125177.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Nitratireductor pacificus pht-3B]
gi|407300306|gb|EKF19431.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Nitratireductor pacificus pht-3B]
Length = 470
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E R KV+ + +GCQMNV D++ + L + GY+ +AD+IL+ TC IRE A
Sbjct: 20 EARPDGKKVFVKTYGCQMNVYDSQRMSDALAADGYAPTERIEDADLILLNTCHIREKAAE 79
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
KV+ L R +KQ + +GV GC+A+ + +L + A+DLV GP +Y LP
Sbjct: 80 KVYSELGRIRQLKQ-ERGALGRETVVGVAGCVAQAEGQEILRRAPAVDLVIGPQTYHRLP 138
Query: 167 RLLALTYSNQTAINVLLSLDETY 189
++ + + ++++ +
Sbjct: 139 MVVKRARGGEKIVETDYAIEDKF 161
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SR + I+ E L++ E+ NVN
Sbjct: 176 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVAQIVAEAEQLAEAGVRELTLLGQNVNA 235
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G ++ +HPR+ D L+
Sbjct: 236 WHGEGADGREWGLGELLFRLAEIPGLDRLRYTTSHPRDMDDALI 279
>gi|312797207|ref|YP_004030129.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
454]
gi|312168982|emb|CBW75985.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI
454]
Length = 288
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ KVY + FGCQMN D++ + +L ++ G K + P +ADVIL TC+IRE A+ KV+
Sbjct: 1 MPKKVYIKTFGCQMNEYDSDKMVDVLGAAEGLIKTDSPEDADVILFNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +KQ+ L IGV GC+A + +++ + +DLV GP + LP ++
Sbjct: 61 SDLGRVRELKQVRPD-----LLIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPAMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S +++ E + ++ P V
Sbjct: 116 DARRASGHAQVDISFPEIEKFDNLPPPRV 144
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C+YC+VP+TRG E SRP+ +L EV L+D+ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCSYCVVPYTRGEEVSRPLDDVLTEVAGLADQGVREVTLLGQNVN 204
>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
Length = 515
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 31 FTRGRERSR-PMQ-----SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYS 82
R+RSR P+Q I ++++ + D K Y +GCQMN +DTEV+ I GY+
Sbjct: 39 LKEARKRSRKPVQYFKDFEIDEDLKGMGDGLKFYIRTYGCQMNEHDTEVMAGIFMQLGYT 98
Query: 83 KVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--E 140
+ADV+L+ TCAIRENAE KV+ + + +K + IGV GCM+ E
Sbjct: 99 PTETVEDADVVLLNTCAIRENAENKVFGEIGHLKPLKT-----EKPDMLIGVCGCMSQEE 153
Query: 141 RLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+ +L+K +D+V G + LP +L Y ++ + + S + + PK
Sbjct: 154 SVVNKILQKHPHVDMVFGTHNIHRLPYILKEAYMSKAMVVEVWSKEGDVIESLPK 208
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ K Y E+
Sbjct: 208 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRELAAKGYKEITLLG 267
Query: 64 MNVN 67
NVN
Sbjct: 268 QNVN 271
>gi|229891226|sp|Q0IC70.2|MIAB_SYNS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 473
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 30 PFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPRE 89
P + ++ P S LDE + S + FGCQMN D+E + IL++ GY + N +
Sbjct: 6 PVSPSLAKTNPASSTLDEGQRGS--YWITTFGCQMNKADSERMAGILETMGYQEANAELD 63
Query: 90 ADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLE 148
AD++L TC IR+NAE KV+ Y + I K RT P L + V GC+A++ +SLL
Sbjct: 64 ADLVLYNTCTIRDNAEQKVYS----YLGRQAIRK--RTNPNLTLVVAGCVAQQEGESLLR 117
Query: 149 KEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
+ LDLV GP L LL + Q +
Sbjct: 118 RVPELDLVMGPQHANRLETLLTQVQAGQQVV 148
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ S A+V+++ GC+ CTYC+VP RG+E+SR +SIL E+ L+ + + E+ N+
Sbjct: 165 DSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSRLPESILLEMEGLAARGFKEITLLGQNI 224
Query: 67 N 67
+
Sbjct: 225 D 225
>gi|91204926|ref|YP_537281.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia
bellii RML369-C]
gi|122426084|sp|Q1RKC2.1|MIAB_RICBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|91068470|gb|ABE04192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii
RML369-C]
Length = 446
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S K+Y + +GCQMNV D+ + +L GY + EADVI++ TC IRE A K +
Sbjct: 1 MSKKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYS 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + ++ KK I V GC+A+ + + + +D+V GP SY +LP L++
Sbjct: 61 ELGRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELIS 120
Query: 171 LTYSNQTAINVLLSLDETYADITPKAVSTDGRRSI 205
++ + L ++E D P+ + G S
Sbjct: 121 KVVRHEKHLIDLDFVEEAKFDQLPEQLYPQGASSF 155
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L S+F+S+ GCD CT+C+VP+TRG E SR ++ + E + E+
Sbjct: 146 QLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRNVEQVYREALKIVSSGAKEIMLLG 205
Query: 64 MNVN 67
NVN
Sbjct: 206 QNVN 209
>gi|428216689|ref|YP_007101154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
gi|427988471|gb|AFY68726.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
Length = 475
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 12/151 (7%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ K + FGCQMN D+E + +L++ GY + +AD++L TC+IR+NAE KV+
Sbjct: 32 AQKYHIVTFGCQMNKADSERMAGVLENIGYRATDDANDADLVLYNTCSIRDNAEQKVYSY 91
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L +Q +KH L + V GC+A++ ++L+ + LDLV GP L LLA
Sbjct: 92 L-----GRQAKRKHSNPGLTLVVAGCVAQQEGEALMRRVPELDLVMGPQHVNRLDDLLAQ 146
Query: 172 TYSNQTAINVLLSLDETY--ADIT-PKAVST 199
Y+ N +++++E + DIT P+ ST
Sbjct: 147 VYAG----NQVVAIEEAFIEEDITKPRRSST 173
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+++A+V+++ GC+ CTYCIVP RG+E+SR +I E+ AL+ + Y E+ N++
Sbjct: 173 TITAWVNVIYGCNESCTYCIVPSVRGQEQSRTPAAIRAEIEALAAQGYKEITLLGQNID 231
>gi|254470768|ref|ZP_05084171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
gi|211959910|gb|EEA95107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062]
Length = 470
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY K +P +AD++++ TC IRE A KV+ L
Sbjct: 28 KVFIKTYGCQMNVYDSDRMNDALSNDGYEKTENPDDADLVILNTCHIREKAAEKVYSELG 87
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ K + + V GC+A+ + + +DLV GP SY LP LL
Sbjct: 88 RIRKLKE-EKAKDGKQMMVSVAGCVAQAEGAEISRRAPVVDLVVGPQSYHRLPELLTRAS 146
Query: 174 SNQTAINVLLSLDETYADI-TP 194
+ + + + + + TP
Sbjct: 147 NGSKVVETEFDIQDKFKHLATP 168
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
V+AFV++ GCD CT+C+VP+TRG E SR ++ I+ E L+ EV NVN
Sbjct: 178 VTAFVTVQEGCDKFCTFCVVPYTRGAEVSRKVEQIVMETERLAAAGVREVTLLGQNVNAW 237
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + K G ++ +HPR+ + L+
Sbjct: 238 HGEGPDGREWGLGELLFRLAKIDGIERLRYTTSHPRDMEDSLI 280
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + +I +E + + K Y +GCQMN +DTEV+ I GY + P
Sbjct: 45 RGKEDVKYHKDFAIPEEFKGMGKDRKFYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPE 104
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ + +++K L +GV GCM+ E + +
Sbjct: 105 DANVILLNTCAIRENAENKVFGEIGHLKALKM-----EKPDLLLGVCGCMSQEELVVNKI 159
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L++ Q +D++ G + LP +L Y ++ +
Sbjct: 160 LKQYQYVDMIFGTHNIHRLPNILHEAYMSKEMV 192
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 213 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVN 271
>gi|374328848|ref|YP_005079032.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. FO-BEG1]
gi|359341636|gb|AEV35010.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. FO-BEG1]
Length = 470
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L + GY K +P +AD++++ TC IRE A KV+ L
Sbjct: 28 KVFIKTYGCQMNVYDSDRMNDALSNDGYEKTENPDDADLVILNTCHIREKAAEKVYSELG 87
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ K + + V GC+A+ + + +DLV GP SY LP LL
Sbjct: 88 RIRKLKE-EKAKDGKQMMVSVAGCVAQAEGAEISRRAPVVDLVVGPQSYHRLPELLTRAS 146
Query: 174 SNQTAINVLLSLDETYADI-TP 194
+ + + + + + TP
Sbjct: 147 NGSKVVETEFDIQDKFKHLATP 168
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AFV++ GCD CT+C+VP+TRG E SR ++ I+ E L+ EV NVN
Sbjct: 178 VTAFVTVQEGCDKFCTFCVVPYTRGAEVSRKVEQIVMETERLAAAGVREVTLLGQNVN 235
>gi|420239533|ref|ZP_14743846.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF080]
gi|398080056|gb|EJL70885.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF080]
Length = 470
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
R+ S KV+ + +GCQMNV D+ + L GY EAD+IL+ TC IRE A KV
Sbjct: 17 RSNSRKVFIKTYGCQMNVYDSGRMSDALAGEGYVPTEEMGEADLILLNTCHIREKAADKV 76
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L R MK+ + L IGV GC+A+ + ++ + A+D+V GP +Y LP
Sbjct: 77 YSALGRLRDMKKA-RAAEGRELMIGVAGCVAQAEGEEIIRRAPAVDVVIGPQTYHRLPEA 135
Query: 169 LALTYSNQTAINVLLSLDETYAD--ITPKA 196
L + ++ ++++ + +T KA
Sbjct: 136 LRRARGGKPVVDTEYAVEDKFEHLPVTEKA 165
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+Q I+DE L D E+ NVN
Sbjct: 171 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVQQIVDEAWRLVDGGVREITLLGQNVN 229
>gi|295696236|ref|YP_003589474.1| MiaB family RNA modification protein [Kyrpidia tusciae DSM 2912]
gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Kyrpidia tusciae DSM 2912]
Length = 484
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 16/156 (10%)
Query: 35 RERSRPMQSILDEVRALSDKV---------YFEVFGCQMNVNDTEVVWSILKSSGYSKVN 85
R R P +S + RA++ V + +GCQMN +D+E++ +L+ GY +
Sbjct: 14 RHRPGPERSQRVDYRAMAQAVPAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPAS 73
Query: 86 HPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLK 143
P EAD+IL TCA+RENAE KV+ + + +K+ H + L +G+ GCMA E+++
Sbjct: 74 APEEADLILFNTCAVRENAEDKVFGEIGRIKPLKRRHPE-----LLLGLCGCMAQEEKVR 128
Query: 144 KSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
+ + + +DLV G + LP L+ ++Q +
Sbjct: 129 QFVRDTFPHVDLVFGTHNLHQLPELVVQAMASQETV 164
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L +D V A+V+I GC+ CTYCIVPFTRGRERSR + ++ EV+ L+++ EV
Sbjct: 180 KLRQDGVKAWVNIQYGCNKYCTYCIVPFTRGRERSRLPEDVVAEVKQLAEEGIREVTLLG 239
Query: 64 MNVND 68
NVND
Sbjct: 240 QNVND 244
>gi|424909290|ref|ZP_18332667.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845321|gb|EJA97843.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 479
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 3/172 (1%)
Query: 29 VPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
P RE S + + A S KV+ + +GCQMNV D+ + L GY +
Sbjct: 10 APPMIAREGSNSQPAPIARDGANSRKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMG 69
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKH-RTFPLKIGVLGCMAERLKKSLL 147
EAD++L+ TC IRE A KV+ L R MK+ ++ R F IGV GC+A+ + +L
Sbjct: 70 EADLVLLNTCHIREKAAEKVYSALGRLRDMKKSREEQGREF--MIGVAGCVAQAEGEEIL 127
Query: 148 EKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVST 199
+ A+D+V GP +Y LP L + I ++++ + + ST
Sbjct: 128 RRAPAVDVVIGPQTYHRLPEALKRVRGGERVIETEYAVEDKFEHLPVAEKST 179
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP++ I+DE L D E+ NVN
Sbjct: 184 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVRQIVDEAMKLVDAGVREITLLGQNVNA 243
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 244 WQGEGPKGEKWGLAELLYRLAEIPGLARLRYTTSHPRDMDDRLI 287
>gi|440225355|ref|YP_007332446.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhizobium tropici CIAT
899]
gi|440036866|gb|AGB69900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhizobium tropici CIAT
899]
Length = 470
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 26 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 85
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 86 LGRLREMKK-RKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALRR 144
Query: 172 TYSNQTAINVLLSLDETY 189
Q ++ ++++ +
Sbjct: 145 AKEGQRVVDTEYAIEDKF 162
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 2 DVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFG 61
+ ++ V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L D E+
Sbjct: 170 EAKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVDGGVREITL 229
Query: 62 CQMNVN 67
NVN
Sbjct: 230 LGQNVN 235
>gi|157413867|ref|YP_001484733.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9215]
gi|229890599|sp|A8G6B6.1|MIAB_PROM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157388442|gb|ABV51147.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9215]
Length = 464
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 13/141 (9%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ FGCQMN D+E + L+ GY++ + +AD++L TC IR+NAE KV+ L
Sbjct: 22 WITTFGCQMNKADSERMAGTLEKMGYTRADDELKADLVLYNTCTIRDNAEQKVYSFL--- 78
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTYS 174
+Q +KH+ LK+ V GC+A++ +SLL + LDLV GP +L LL +
Sbjct: 79 --GRQAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136
Query: 175 NQTAINVLLSLDETY--ADIT 193
NQ A + +ET+ DIT
Sbjct: 137 NQVA-----ATEETFISEDIT 152
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S+ +V+I+ GC+ C+YC+VP RG+E+SR +I E++ L++ + E+ N+
Sbjct: 157 ESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRYPDAIKSEIQKLANDNFKEITLLGQNI 216
Query: 67 N 67
+
Sbjct: 217 D 217
>gi|189347647|ref|YP_001944176.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium
limicola DSM 245]
gi|229890475|sp|B3EGT4.1|MIAB_CHLL2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|189341794|gb|ACD91197.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245]
Length = 442
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN D+ ++ ++L+ GY + + EA +I++ TCA+RENA ++ L+
Sbjct: 7 KFYIHTFGCQMNQADSGIIAALLEQDGYQQASSEEEAGIIMLNTCAVRENAVERIAHYLQ 66
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ K R P L +G+ GC+ + ++ L +D +AGPD+Y+ LP L+A
Sbjct: 67 HVKGFK------RKCPELLVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPVLIAEA 120
Query: 173 YSNQTAINVLLSLDETYADIT 193
+ A + + ETY +T
Sbjct: 121 GKGRAA-RLDFNPFETYDGVT 140
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S++AFV IMRGC+NMC +C+VPFTRGRERS P S+LDEVRAL++ E+ NVN
Sbjct: 146 SLTAFVPIMRGCNNMCAFCVVPFTRGRERSHPFGSVLDEVRALAESGCREITLLGQNVNS 205
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
+ ++ ++ + + +++ +HP++ LV T A R N
Sbjct: 206 YHDSQSGADFSRLLDAVSREAPETRIRFTTSHPKDMSHSLVETMASRPN 254
>gi|193211917|ref|YP_001997870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobaculum
parvum NCIB 8327]
gi|229890476|sp|B3QR49.1|MIAB_CHLP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|193085394|gb|ACF10670.1| RNA modification enzyme, MiaB family [Chlorobaculum parvum NCIB
8327]
Length = 443
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S + FGCQMN+ DTE+V +IL G++ AD++L+ TCA+R NA + +
Sbjct: 1 MSPTFFIHTFGCQMNMADTEIVTAILVEGGFAPAEDEGTADMVLLNTCAVRANAVDRAGN 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL- 169
L + MK+ K L +G+LGC+ + ++ L +D + GPD+Y+DL ++
Sbjct: 61 VLSHLKGMKRRRKG-----LVVGLLGCVPQYEREQLFGDFPFVDFIVGPDNYRDLCGIVR 115
Query: 170 ALTYSNQTAINVLLSLDETYADITP 194
++ Q + ETYA I P
Sbjct: 116 SVREGEQRRAFIDYDQQETYAGIDP 140
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
+ + VS F+ +MRGC+N C +C+VP TRGRERS ++ EV AL Y EV
Sbjct: 141 IRANRVSTFLPVMRGCNNHCAFCVVPVTRGRERSVAFDRVIAEVAALEQAGYREVTLLGQ 200
Query: 65 NVN 67
NVN
Sbjct: 201 NVN 203
>gi|408787223|ref|ZP_11198954.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
lupini HPC(L)]
gi|408486854|gb|EKJ95177.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium
lupini HPC(L)]
Length = 479
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 3/172 (1%)
Query: 29 VPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
P RE S + + A S KV+ + +GCQMNV D+ + L GY +
Sbjct: 10 APPMIAREGSNSQPASIARDGANSRKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMG 69
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKH-RTFPLKIGVLGCMAERLKKSLL 147
EAD++L+ TC IRE A KV+ L R MK+ ++ R F IGV GC+A+ + +L
Sbjct: 70 EADLVLLNTCHIREKAAEKVYSALGRLRDMKKSREEQGREF--MIGVAGCVAQAEGEEIL 127
Query: 148 EKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVST 199
+ A+D+V GP +Y LP L + I ++++ + + ST
Sbjct: 128 RRAPAVDVVIGPQTYHRLPEALKRVRGGERVIETEYAVEDKFEHLPVAEKST 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP++ I+DE L D E+ NVN
Sbjct: 184 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVRQIVDEAMKLVDAGVREITLLGQNVNA 243
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
E+++ + + G +++ +HPR+ D L+
Sbjct: 244 WQGEGPKGEKWGLAELLYWLAEIPGLARLRYTTSHPRDMDDRLI 287
>gi|150395268|ref|YP_001325735.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium
medicae WSM419]
gi|229890663|sp|A6U5H0.1|MIAB_SINMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|150026783|gb|ABR58900.1| RNA modification enzyme, MiaB family [Sinorhizobium medicae WSM419]
Length = 472
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L GY + EAD +L+ TC IRE A KV+ L
Sbjct: 23 KVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEEADFVLLNTCHIREKAAEKVYSELG 82
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ K + IGV GC+A+ K +L + A+DLV GP +Y LP L
Sbjct: 83 RLRDLKKA-KAREGREMLIGVAGCVAQAEGKEILRRAPAVDLVIGPQTYHRLPEALRRAR 141
Query: 174 SNQTAINVLLSLDETYADI-TPKAVSTDGR 202
+ + + ++++ + + P T R
Sbjct: 142 TGERIVETDYAIEDKFVHLPAPDKAKTRAR 171
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L + E+ NVN
Sbjct: 172 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAEKLVEGGVREITLLGQNVN 230
>gi|217979028|ref|YP_002363175.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylocella
silvestris BL2]
gi|217504404|gb|ACK51813.1| RNA modification enzyme, MiaB family [Methylocella silvestris BL2]
Length = 490
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD--- 110
K++ + FGCQMNV D++ + +L GY P +AD+I++ TC IRE A K++
Sbjct: 29 KLFVQSFGCQMNVYDSQKMTDLLGREGYGAAAGPEDADLIILNTCHIRERASEKIFSELG 88
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RLR ++++ + + KI V GC+A+ + ++ A+D+V GP SY LP LL
Sbjct: 89 RLRELKALRAVEGRK----TKIVVAGCVAQAEGAEIHRRQSAVDVVVGPQSYHRLPELL 143
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPM 41
VSAFV++ GCD CT+C+VP+TRG E SRP+
Sbjct: 179 VSAFVTVQEGCDKFCTFCVVPYTRGAEFSRPV 210
>gi|153004383|ref|YP_001378708.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Anaeromyxobacter sp. Fw109-5]
gi|229890439|sp|A7HAH8.1|MIAB_ANADF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152027956|gb|ABS25724.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5]
Length = 460
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A + KVY FGCQMN +D++ + +L +++ P +AD+IL+ TCA+RE AE K+
Sbjct: 20 AAARKVYVHTFGCQMNASDSDRMIELLGRHAFARAETPDDADLILLNTCAVREKAEQKLL 79
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L YR +K I V GC+A++ K LL + +D V GPD+ LP ++
Sbjct: 80 SALGRYREVKARRGA------LIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGKLPEMV 133
Query: 170 ALTYSNQTAINVLL-SLDETYADITPKAVSTDGRRSIYV 207
A + A + S D + P+A GR + +V
Sbjct: 134 ARAERERFAETGWMDSQDYVFPQADPEAAR--GRPTAFV 170
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AFV+ M+GCDN+C +CIVP TRGRE SR I+ E +L++ EV NVN
Sbjct: 167 TAFVTAMKGCDNVCAFCIVPHTRGREVSRAFPEIVAECASLAEVGVREVTLIGQNVNSYA 226
Query: 69 -----TEVVWSILKSSGYSKV----NHPREADVILV 95
E++ + G +++ +HP + LV
Sbjct: 227 GGCTFAELLRRVAAVPGIARIRFTTSHPHDLSDALV 262
>gi|372487871|ref|YP_005027436.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dechlorosoma suillum PS]
gi|359354424|gb|AEV25595.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dechlorosoma suillum PS]
Length = 446
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSIL-KSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K+Y + FGCQMN D++ + +L +S K ++P EAD+IL TC++RE A+ KV+
Sbjct: 1 MSKKLYIKTFGCQMNEYDSDKMADVLNQSEPLEKTDNPEEADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L + +K+++ L IGV GC+A + +++ + +D+V GP + LP+L+
Sbjct: 61 HDLGRVKHLKKLNPN-----LVIGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQLI 115
Query: 170 ALTYSN-QTAINVLLSLDETYADITPKAV 197
A S + A++V E + + P V
Sbjct: 116 AERKSQGKAAVDVSFPEIEKFDALPPAKV 144
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +AFVSIM GC CT+CIVP+TRG E SRP + IL EV L+ + EV NVN
Sbjct: 145 EGATAFVSIMEGCSKFCTFCIVPYTRGAEVSRPFEDILTEVAGLAQQGVKEVTLLGQNVN 204
>gi|78779785|ref|YP_397897.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9312]
gi|123741439|sp|Q319I4.1|MIAB_PROM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|78713284|gb|ABB50461.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus
str. MIT 9312]
Length = 463
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ FGCQMN D+E + L+ GY++ + AD++L TC IR+NAE KV+ L
Sbjct: 22 WITTFGCQMNKADSERMAGTLEKMGYTRADDELNADLVLYNTCTIRDNAEHKVYSFL--- 78
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTYS 174
+Q +KH+ LK+ V GC+A++ +SLL + LDLV GP +L LL +
Sbjct: 79 --GRQAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136
Query: 175 NQTAINVLLSLDETY--ADIT 193
NQ A + +ET+ DIT
Sbjct: 137 NQVA-----ATEETFISEDIT 152
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S+ +V+I+ GC+ C+YC+VP RG+E+SR +I E++ L+D + E+ N+
Sbjct: 157 ESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRYPNAIKSEIQKLADDNFKEITLLGQNI 216
Query: 67 ND------------------TEVVWSILKSSGYSKV----NHPREADVILVMTC 98
+ T++++ I +G S++ +HPR L+ C
Sbjct: 217 DAYGRDLPGTTKEGRKENTLTDLLYYIHDINGISRIRFATSHPRYFSKRLIQAC 270
>gi|311030160|ref|ZP_07708250.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
m3-13]
Length = 514
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 43 SILDEVRALS--DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
SI +E + L K Y +GCQMN +DTEV+ I + GY +ADVIL+ TCAI
Sbjct: 56 SISEEFKNLGVGKKFYIRTYGCQMNEHDTEVMAGIFLALGYEATYTVNDADVILLNTCAI 115
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVA 157
RENAE KV+ L +++K ++ P L IGV GCM+ E + +L+ Q +D++
Sbjct: 116 RENAENKVFGELGHLKTLK------KSRPGLLIGVCGCMSQEESVVNKILKTYQQVDMIF 169
Query: 158 GPDSYKDLPRLLALTY-SNQTAINV 181
G + LP +L Y S + I V
Sbjct: 170 GTHNIHRLPNILKDAYMSKEMVIEV 194
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+ NVN
Sbjct: 212 EIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVN 270
>gi|359419298|ref|ZP_09211256.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
araii NBRC 100433]
gi|358244705|dbj|GAB09325.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
araii NBRC 100433]
Length = 519
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 45 LDEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
+D +R D+ +EV FGCQMNV+D+E + +L+ +GY E D+++ TCA+RE
Sbjct: 8 IDTLRPGEDRRSYEVRTFGCQMNVHDSERISGLLEEAGYVAAADGDEPDLVVFNTCAVRE 67
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA+ K++ L +K+ R ++I V GC+A++ K ++L++ +D+V G +
Sbjct: 68 NADNKLYGNLSHLAPVKR-----RKPGMQIAVGGCLAQKDKSTVLDRAPWVDVVFGTHNI 122
Query: 163 KDLPRLLALTYSNQTA-INVLLSLD 186
LP LL N A + +L SL+
Sbjct: 123 GSLPALLDRARHNDEAQVEILESLE 147
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ + S +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 158 DSAYSGWVSVSVGCNNTCTFCIVPSLRGKETDRRPADILSEVQALVDQGVLEVTLLGQNV 217
Query: 67 N 67
N
Sbjct: 218 N 218
>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
Length = 437
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+++GY++ AD+IL+ TC +RE AE KV+ ++ + +
Sbjct: 9 VYGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKI 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTYSNQT 177
K+ + K L G+ GCMA++ +L+ + +D V G ++L R++A + +
Sbjct: 69 KEKNPK-----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSP 123
Query: 178 AINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI----------YVDGRWRRKLGQQM 227
++V LS E D+ V+ G+ S +V + YV GR R + +++
Sbjct: 124 VVDVALSDSEIAEDLP---VARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEV 180
Query: 228 V 228
V
Sbjct: 181 V 181
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V IM GC+N CTYCIVP+ RGRERSR + ++ EVR + Y EV NVN
Sbjct: 147 SAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVAEGYREVTLLGQNVN 203
>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
Length = 444
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+++GY++ AD+IL+ TC +RE AE KV+ ++ + +
Sbjct: 16 VYGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKI 75
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTYSNQT 177
K+ + K L G+ GCMA++ +L+ + +D V G ++L R++A + +
Sbjct: 76 KEKNPK-----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSP 130
Query: 178 AINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI----------YVDGRWRRKLGQQM 227
++V LS E D+ V+ G+ S +V + YV GR R + +++
Sbjct: 131 VVDVALSDSEIAEDLP---VARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEV 187
Query: 228 V 228
V
Sbjct: 188 V 188
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V IM GC+N CTYCIVP+ RGRERSR + ++ EVR + Y EV NVN
Sbjct: 154 SAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVAEGYREVTLLGQNVN 210
>gi|283778559|ref|YP_003369314.1| MiaB family RNA modification protein [Pirellula staleyi DSM 6068]
gi|283437012|gb|ADB15454.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068]
Length = 475
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 10/132 (7%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y E GCQMNV D+E+V + L+ GY ADV+L TC++RE AE K + L
Sbjct: 3 RLYIETVGCQMNVLDSEMVVASLRKRGYELERDEASADVLLFNTCSVREQAENKTYSALG 62
Query: 114 FYRSMKQIHKKHRTFPLK-IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL--- 169
RS+K+ + P K IGV+GCMA++ ++ + ++ +DLV GP +P L+
Sbjct: 63 RLRSLKKAN------PDKIIGVMGCMAQKDQQLVFDRAPYVDLVVGPGQLSRIPDLIDQV 116
Query: 170 ALTYSNQTAINV 181
A + Q A+++
Sbjct: 117 AAGHGKQMAVSL 128
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 2 DVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFG 61
D + A++ I GCD CTYCIVP TRG E+ RP Q I DE R L+D+ E+
Sbjct: 150 DPTMRPTPFQAYLRIQIGCDKFCTYCIVPSTRGPEQGRPPQQIYDEARILADQGCKEITL 209
Query: 62 CQMNVN 67
VN
Sbjct: 210 IGQTVN 215
>gi|224542096|ref|ZP_03682635.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
15897]
gi|224525029|gb|EEF94134.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Catenibacterium mitsuokai
DSM 15897]
Length = 483
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y + +GCQ N DTE + IL+ GY+ + ++ADV+L+ TCAIRENAE KV+ ++ +
Sbjct: 47 YIQTYGCQANERDTETLSGILEMMGYTHTDEVKQADVVLLNTCAIRENAEEKVFGKIGYL 106
Query: 116 RSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+++K +T P L GV GCMA E + +LEK +DL+ G + LP LL
Sbjct: 107 KNIK------KTRPNLIFGVCGCMAQEEVVVNKILEKFPQVDLIFGTHNIHRLPVLL 157
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++ A+V+IM GC+ CTYCIVP+TRG+ERSR ++ I+ EV L + Y E+ NVN
Sbjct: 187 NNYKAWVNIMYGCNKFCTYCIVPYTRGKERSRELEEIIKEVEELKNSGYKEITLLGQNVN 246
>gi|254485983|ref|ZP_05099188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
gi|214042852|gb|EEB83490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101]
Length = 462
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 37 RSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVM 96
R P+ S D K++ + +GCQMNV D+E + L Y + +AD+IL+
Sbjct: 13 RLAPLLST-DHAMTAPKKLFIKTYGCQMNVYDSERMAESL-GDAYVETKTAADADMILLN 70
Query: 97 TCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV 156
TC IRE A KV+ L + +K ++ LKIGV GC+A+ ++ ++ A+DLV
Sbjct: 71 TCHIREKAAEKVYSELGRLKPLKALNPD-----LKIGVAGCVAQAEGAEIMRRQPAVDLV 125
Query: 157 AGPDSYKDLPRLLALTYSNQTAIN 180
GP SY LP + A +TA++
Sbjct: 126 VGPQSYHRLPAMEARVREGKTALD 149
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
SAF+++ GCD C +C+VP+TRG E SRP +L E L ++ EV NVN
Sbjct: 172 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPATRVLAEACELVERGVREVTLLGQNVN--- 228
Query: 71 VVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
Y V P AD L IRE A+ +R+R+ S
Sbjct: 229 ---------AYHGVG-PEGADYTLARL--IREIAKIDGLERIRYTTS 263
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K +GCQMN +DTEV+ IL GY ++ +AD+IL+ TCAIRENAE KV+ +
Sbjct: 76 KFLIRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIG 135
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ +K + K L IGV GCM+ E + +L+K Q +DL+ G + LP+L+
Sbjct: 136 HLKPLK-LEKPD----LIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLI 188
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP TRG+ERSR + I+ EVR L + Y EV
Sbjct: 214 KVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEVRHLVAQGYQEVTLLG 273
Query: 64 MNVN 67
NVN
Sbjct: 274 QNVN 277
>gi|15614935|ref|NP_243238.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
halodurans C-125]
gi|81786524|sp|Q9KAB7.1|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
Length = 538
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 33 RGRERS---RPMQSILDEVRALS--DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHP 87
RG+E RP I ++++ + K +GCQMN++D+E + +LK G+ +
Sbjct: 70 RGKEEVKVLRPDDLIPEDMKTIGAGKKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDET 129
Query: 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKS 145
+ADVIL+ TCAIRENAE KV+ + ++KQ+ K L IGV GCM+ E +
Sbjct: 130 TDADVILINTCAIRENAENKVFGEI---GNLKQL--KREKPELVIGVCGCMSQEEGVVNR 184
Query: 146 LLEKEQALDLVAGPDSYKDLPRLL 169
+++K Q +D++ G + LP LL
Sbjct: 185 IMQKHQHIDMIFGTHNIHRLPHLL 208
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R E A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 234 RAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRDLARQGYKEITLLG 293
Query: 64 MNVN 67
NVN
Sbjct: 294 QNVN 297
>gi|23099083|ref|NP_692549.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
iheyensis HTE831]
gi|81746368|sp|Q8EQR4.1|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 519
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K +GCQMN +DTEV+ IL GY EAD+IL+ TCAIRENAE KV+ +
Sbjct: 77 KFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENKVFGEIG 136
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
+ +K L IGV GCM+ E + +L+K Q +DL+ G + LP L+
Sbjct: 137 HLKPLKL-----ENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVKE 191
Query: 172 TYSNQTAINVLLSLDETYADITPKA 196
+ I + S + + PKA
Sbjct: 192 ALFGKEMIVEVWSKEGDIIENLPKA 216
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP TRG+ERSR + I+ EVR L + Y EV NVN
Sbjct: 221 IKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPKDIIQEVRHLVAQGYQEVTLLGQNVN 278
>gi|217967463|ref|YP_002352969.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
turgidum DSM 6724]
gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
6724]
Length = 441
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + +GCQMN +D+E V IL+S GY EAD+IL+ TC++RE AE KV+ +L
Sbjct: 3 KYHIITYGCQMNKSDSEKVAGILESLGYIPSEKMEEADLILLNTCSVRERAEEKVFGKLG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K + L IG+ GCMA+R+K+ L+EK +D V G + +LP++L
Sbjct: 63 -----ELRKLKKKNQKLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKVLESLN 117
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDGR 202
N I A+ PK D R
Sbjct: 118 DNNKKI--------VLAEDNPKPEEVDFR 138
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV------- 59
E+ A++ I+ GC+N CTYCIVP+ RG+E+SR Q I+ E+ L+++ EV
Sbjct: 143 ENKFQAWIPIIYGCNNFCTYCIVPYLRGKEKSRDPQEIIKEIEHLANQGVVEVTLLGQNV 202
Query: 60 --FGCQM-NVNDTEVVWSILKSSGYSKV----NHPREADVILVMTCA 99
+G + NV+ +++ I K G ++ +HPR+ L+ A
Sbjct: 203 DSYGKDLGNVDLADLLVEIHKIPGIKRIRFLTSHPRDVSDKLINVVA 249
>gi|289424090|ref|ZP_06425876.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
anaerobius 653-L]
gi|289155515|gb|EFD04194.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
anaerobius 653-L]
Length = 482
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ FGCQMN +D+E++ S+L+S GYS+ AD+++ TCA+RENAE KV+ L +
Sbjct: 43 IQTFGCQMNEHDSEMLISMLESIGYSRALSEDTADIVIYNTCAVRENAELKVYGNLGHLK 102
Query: 117 SMKQIHKKHRTFP-LKIGVLGCM--AERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
S+K R P +KI V GCM E + + + K Q +DLV G + P LLA T+
Sbjct: 103 SIK------RKRPDMKIVVCGCMMQQEHIVEEIKAKHQHVDLVFGTHNLYKFPELLASTF 156
Query: 174 -SNQTAINV 181
S++ ++V
Sbjct: 157 ESDKILVDV 165
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ AFV+IM GC+N CTYCIVP+TRGRERSR + I+ E+ L EV NVN
Sbjct: 184 IKAFVNIMYGCNNFCTYCIVPYTRGRERSRKPKDIISEIEDLVKGGVREVTLLGQNVN 241
>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
Length = 514
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ Y + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK+R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKNRPETL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S A+V+IM GCD CTYCIVPFTRG+ERSR Q I++EVR L+ + Y E+
Sbjct: 207 KVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDIIEEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|297208061|ref|ZP_06924492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|296887304|gb|EFH26206.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC 51811]
Length = 514
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQS--ILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R ++ I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRNFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|254551787|ref|ZP_05142234.1| hypothetical alanine, arginine-rich protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
Length = 512
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 49 RALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
RAL+ +GCQMNV+D+E + +L+++GY + EADV++ TCA+RENA+
Sbjct: 21 RALARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADN-- 78
Query: 109 WDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167
R Y ++ + + R P ++I V GC+A++ + ++L + +D+V G + LP
Sbjct: 79 ----RLYGNLSHLAPRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPT 134
Query: 168 LLALTYSNQTA 178
LL N+ A
Sbjct: 135 LLERARHNKVA 145
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RGRE R IL EVR+L + EV NV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 225 NAYGVSFA 232
>gi|421588190|ref|ZP_16033506.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
Pop5]
gi|403707160|gb|EJZ22237.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
Pop5]
Length = 469
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDLEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRQ 139
Query: 172 TYSNQTAINVLLSLDETY 189
+ ++ ++++ +
Sbjct: 140 AKQGRRVVDTEYAIEDKF 157
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVN 230
>gi|167561620|ref|ZP_02354536.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
EO147]
gi|167568856|ref|ZP_02361730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis
C6786]
Length = 457
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KVY + FGCQMN D++ + +L +S G K + P +AD+IL TC++RE A+ KV+
Sbjct: 1 MTKKVYVKTFGCQMNEYDSDKMVDVLNASEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ L IGV GC+A + S++ + +DLV GP + LP+++
Sbjct: 61 SDLGRVRELKEAKPD-----LLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S + +++ E + + P V
Sbjct: 116 DARRASGRAQVDITFPEIEKFDHLPPARV 144
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIM GC C+YC+VP+TRG E SRP+ +L E+ L+D+ EV NVN
Sbjct: 148 SAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVN 204
>gi|387907186|ref|YP_006337522.1| MiaB family RNA modification protein [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582079|gb|AFJ90857.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Blaberus giganteus)]
Length = 444
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMN++D+ ++ SIL +G+ + ++A++IL+ C+IRE AE L
Sbjct: 9 YIENYGCQMNISDSNIITSILLKNGFFLSENLKKANIILLNACSIREKAE------LTLK 62
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
+ ++Q+ + + +G++GC ++++K LL+++ A D PDSY+++P + +
Sbjct: 63 KRLEQLKFLKKKKKICVGIIGCFSKQIKNFLLQEKMA-DFFVNPDSYREIPNFIYYSTIG 121
Query: 176 QTAINVLLSLDETYADIT 193
+ +V +ETYADI+
Sbjct: 122 KQYFHV-AKKNETYADIS 138
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
N ++ F+SI GC+NMCT+CIVPFTRGRERSR SI+ E + L Y E+
Sbjct: 142 NNKKITTFLSITIGCNNMCTFCIVPFTRGRERSRDPYSIIKECKRLYKNGYKEI 195
>gi|429730706|ref|ZP_19265352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Corynebacterium durum
F0235]
gi|429147144|gb|EKX90174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Corynebacterium durum
F0235]
Length = 520
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 53 DKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+K Y FGCQMNV+D+E + +L+ +GY + + E D+++ TCA+RENA+ +++
Sbjct: 9 EKTYEVRTFGCQMNVHDSERLSGLLEEAGYIRASEGVEPDLVVFNTCAVRENADNRLYGT 68
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L RS+K+ H ++I V GC+A++ K +++K +D+V G + LP LL
Sbjct: 69 LGQLRSVKENHPG-----MQIAVGGCLAQKDKDMVVKKAPWVDVVFGTHNIGSLPALLDR 123
Query: 172 TYSNQTAINVLLSLDETYADITP 194
N+ A ++ E + + P
Sbjct: 124 AAHNEEAAVEIVDSLEQFPSVLP 146
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RGRE R IL EV+AL D+ EV NV
Sbjct: 150 ESAYAGWVSVSVGCNNTCTFCIVPSLRGREIDRRPGDILAEVQALVDQGVSEVTLLGQNV 209
Query: 67 N 67
N
Sbjct: 210 N 210
>gi|85859266|ref|YP_461468.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
gi|123725257|sp|Q2LT94.1|MIAB_SYNAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|85722357|gb|ABC77300.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB]
Length = 461
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGK 107
+R +Y + GCQMNV+D+E + ++++ GY EAD+I++ TC+IRE A K
Sbjct: 13 IRLDKKHIYIQTLGCQMNVHDSEQIAALMEEKGYICTEDANEADLIILNTCSIREKAAQK 72
Query: 108 VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167
+L YR++K +K R L IGV GC+A++L LL K +D + G + LP
Sbjct: 73 AKSQLGRYRNLK---RKKRN--LLIGVGGCLAQQLGDELLTKVPDIDFIFGTHNIHQLPD 127
Query: 168 LLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
++ ++ I V +L + I A+ +G+ S +V
Sbjct: 128 FISRIEKSRKKI-VETTLHPSTPSIGVLALPCNGQVSSFV 166
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 15/101 (14%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VS+FV+IM+GC+N C+YCIVP+ RGRE SRP + I+ E+R L+D EV NVN
Sbjct: 162 VSSFVTIMQGCNNFCSYCIVPYVRGREESRPPEDIIHEIRMLADHGVKEVTLLGQNVNSY 221
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILV 95
E++ I K G ++ +HP++ L+
Sbjct: 222 ARKTSGEMGFAELLREIEKIKGIERMRFTTSHPKDLSEFLI 262
>gi|422325390|ref|ZP_16406426.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Rothia
mucilaginosa M508]
gi|353343394|gb|EHB87712.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Rothia
mucilaginosa M508]
Length = 504
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+++GY + + D+++ TCA+RENA +++ L +
Sbjct: 23 TFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGNLGQLAPV 82
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ HK ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 83 KRAHKG-----MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERARHNHEA 137
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 138 QAELLESLEVFPSTLP 153
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 86/209 (41%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 161 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYG 220
Query: 68 ----DTEVVWSILKS----SGYSKVN----HP------------READVILVMTCAIREN 103
D + +L++ G +V HP +V+ V+ ++
Sbjct: 221 VEFGDRQAFSKLLRACGEIEGLERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSG 280
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I K R T + +G G E + +L EQA
Sbjct: 281 SDKVLKDMRRSYRSKKFLNILDKVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQAR 340
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ V+
Sbjct: 341 FSSAFTFQYSIRPGTPAATMENQIPKEVV 369
>gi|51892897|ref|YP_075588.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
gi|81388796|sp|Q67NJ9.1|MIAB_SYMTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|51856586|dbj|BAD40744.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
Length = 470
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+V+ E FGCQMN +D+E+++ IL GY K P +AD++L TCA+RE+A + R+
Sbjct: 21 RVHIETFGCQMNEHDSEIMYGILAQMGYVKAQGPDDADLLLFNTCAVRESAVEHAFGRIG 80
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCM------AERLKKSLLEKEQALDLVAGPDSYKDLPR 167
+ +K + L IGV GC+ ER+K+ LDL+ G + LP
Sbjct: 81 QLKPLKYTNPD-----LIIGVCGCVPQVEGQVERIKRMF----PYLDLIFGTHNIHRLPE 131
Query: 168 LLALTYSN-QTAINVLLSLDETYADITPKAVSTD 200
L+ S +T ++V S+ + + DI P A D
Sbjct: 132 LVERARSERETVVDVWESMGDDFPDILPAAREGD 165
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + A+V+IM GCD CTYCIVP TRG+ERSRP + IL EV+ L+ + + E+ NV
Sbjct: 163 EGDLKAWVTIMYGCDKHCTYCIVPTTRGKERSRPYEVILAEVQELARQGFKEITLLGQNV 222
Query: 67 N 67
N
Sbjct: 223 N 223
>gi|376243051|ref|YP_005133903.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae CDCE
8392]
gi|372106293|gb|AEX72355.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae CDCE
8392]
Length = 543
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 46 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 105
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS+K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 106 LRSVKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 160
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 161 NKRAEVEIVDSL-EQFPSVLP 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 184 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 243
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 244 NAYGVNFS 251
>gi|218682221|ref|ZP_03529822.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CIAT 894]
Length = 394
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRQ 139
Query: 172 TYSNQTAINVLLSLDETY 189
+ ++ ++++ +
Sbjct: 140 AKQGRRVVDTEYAIEDKF 157
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDT 69
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L + E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAEKLVEGGVREITLLGQNVN-- 230
Query: 70 EVVWSILKSSG 80
W S G
Sbjct: 231 --AWHGAGSGG 239
>gi|254437886|ref|ZP_05051380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
antarcticus 307]
gi|198253332|gb|EDY77646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter
antarcticus 307]
Length = 441
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L + GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 12 KLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAEKVYSELG 71
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ +K LKIGV GC+A+ ++ ++ +DLV GP SY LP +
Sbjct: 72 RLKPLKANKPD-----LKIGVTGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPSMEQAVA 126
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ A++ D+ + + ++ + G
Sbjct: 127 RGEKALDTDFPEDDKFETLKSRSKAKRG 154
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE- 70
AF+++ GCD C +C+VP+TRG E SRP I+ E + L + E+ NVN
Sbjct: 157 AFLTVQEGCDKFCAFCVVPYTRGSEVSRPADRIIREAQELVETGVREITLLGQNVNAYHG 216
Query: 71 -------VVWSILKSSGYSKV----NHPREADVILV 95
++W + K G ++ +HP + D L+
Sbjct: 217 HAGGLAGLIWDLDKVDGLERIRFTTSHPNDMDDALI 252
>gi|34499604|ref|NP_903819.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Chromobacterium violaceum ATCC 12472]
gi|81654199|sp|Q7NQI8.1|MIAB_CHRVO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|34105455|gb|AAQ61810.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 444
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
KVY + FGCQMN D++ + +L S+ G K ++P EADVIL TC++RE A+ KV+ L
Sbjct: 3 KVYIKTFGCQMNEYDSDKMADVLGSAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSDL 62
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL-AL 171
R +K+ + L IGV GC+A + +++++ +D+V GP + LP L+ +
Sbjct: 63 GRIRPLKEANPD-----LIIGVGGCVASQEGDAIVKRAPFVDVVFGPQTLHRLPDLIESR 117
Query: 172 TYSNQTAINVLLSLDETYADITPKAV 197
S ++ +++ E + I P V
Sbjct: 118 KQSGRSQVDISFPEIEKFDHIPPAKV 143
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D +AFVSIM GC C++C+VP+TRG E SRP + +L E+ L+ + E+ NVN
Sbjct: 144 DGGAAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLTEIAGLAAQGVKEITLLGQNVN 203
>gi|376254537|ref|YP_005142996.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae PW8]
gi|376290651|ref|YP_005162898.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae C7
(beta)]
gi|376293452|ref|YP_005165126.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae HC02]
gi|372104047|gb|AEX67644.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae C7
(beta)]
gi|372110775|gb|AEX76835.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae HC02]
gi|372117621|gb|AEX70091.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae PW8]
Length = 543
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 46 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 105
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS+K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 106 LRSVKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 160
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 161 NKRAEVEIVDSL-EQFPSVLP 180
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 184 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 243
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 244 NAYGVNFS 251
>gi|410692330|ref|YP_003622951.1| MiaB protein (Methylthiolation of isopentenylated A37 derivatives
in tRNA) [Thiomonas sp. 3As]
gi|294338754|emb|CAZ87086.1| MiaB protein (Methylthiolation of isopentenylated A37 derivatives
in tRNA) [Thiomonas sp. 3As]
Length = 453
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KV+ + FGCQMN D+ + +L ++ GY V P+EAD+IL+ TC+IRE A+ KV+
Sbjct: 7 VTKKVFIKTFGCQMNEYDSAKMADVLGAAEGYEPVATPQEADLILLNTCSIREKAQEKVF 66
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K L IGV GC+A + ++++++ +DLV GP + LP+L+
Sbjct: 67 SDLGRLRELKADKPN-----LLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPQLI 121
Query: 170 A 170
A
Sbjct: 122 A 122
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIM GC C+YC+VP+TRG E SRP+ +L EV L+ EV NVN
Sbjct: 154 SAFVSIMEGCSKYCSYCVVPYTRGEEVSRPLVDVLTEVAELASLGVREVTLLGQNVN 210
>gi|118580144|ref|YP_901394.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
propionicus DSM 2379]
gi|229890588|sp|A1APR6.1|MIAB_PELPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|118502854|gb|ABK99336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter propionicus
DSM 2379]
Length = 440
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY E FGCQMNVND+E + ++L GY P A +IL+ TC++R AE KV+ RL
Sbjct: 6 VYIETFGCQMNVNDSERILTMLADIGYVPTQEPARARLILLNTCSVRAGAEEKVYRRLEN 65
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
+K+ + + L IGV GC+A++ ++LLE+ LDLV G
Sbjct: 66 LVVLKRHNSR-----LIIGVGGCVAQQEGEALLERIPKLDLVFG 104
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++M+GC+N C+YCIVP+ RG E SR IL EVR L+D+ EV NVN
Sbjct: 148 ISSFVTVMQGCENYCSYCIVPYVRGPEVSRRSGDILREVRQLADQGVREVALLGQNVN 205
>gi|408379951|ref|ZP_11177542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
albertimagni AOL15]
gi|407746328|gb|EKF57853.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
albertimagni AOL15]
Length = 464
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D+ + L GY+ EAD++L+ TC IRE A KV+ L
Sbjct: 20 KVFIKTYGCQMNVYDSGRMADALAVDGYAPTEVMEEADLVLLNTCHIREKAAEKVYSALG 79
Query: 114 FYRSMKQIHKKHRTFPLK---IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
R HKK R K IGV GC+A+ + + +E A+D+V GP +Y LP+ L
Sbjct: 80 RLRE----HKKARAAEGKEFMIGVAGCVAQAEGEEISRREPAVDVVLGPQTYHRLPQALQ 135
Query: 171 LTYSNQTAINVLLSLDETY 189
+ + ++ +L++ +
Sbjct: 136 KARAGERVVDTEYALEDKF 154
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
SV+AF+++ GCD CT+C+VP+TRG E SRP+ +L E R L D E+ NVN
Sbjct: 169 SVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPLSQLLTEARRLVDSGVRELTLLGQNVNA 228
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + + G +++ +HPR+ D L+
Sbjct: 229 WHGEDEQGMAIGLGDLLYKLAQIPGLARLRYTTSHPRDMDDRLI 272
>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 514
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ Y + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK+R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKNRPETL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S A+V+IM GCD CTYCIVPFTRG+ERSR Q I++EVR L+ + Y E+
Sbjct: 207 KVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDIIEEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|376257347|ref|YP_005145238.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae VA01]
gi|372119864|gb|AEX83598.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae VA01]
Length = 543
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 46 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 105
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS+K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 106 LRSVKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 160
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 161 NKRAEVEIVDSL-EQFPSVLP 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 184 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 243
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 244 NAYGVNFS 251
>gi|255326358|ref|ZP_05367442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
25296]
gi|255296575|gb|EET75908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC
25296]
Length = 504
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+++GY + + D+++ TCA+RENA +++ L +
Sbjct: 23 TFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGNLGQLAPV 82
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ HK ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 83 KRAHKG-----MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERARHNHEA 137
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 138 QAELLESLEVFPSTLP 153
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 86/209 (41%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 161 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYG 220
Query: 68 ----DTEVVWSILKS----SGYSKVN----HP------------READVILVMTCAIREN 103
D + +L++ G +V HP +V+ V+ ++
Sbjct: 221 VEFGDRQAFSKLLRACGEIEGLERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSG 280
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I K R T + +G G E + +L EQA
Sbjct: 281 SDKVLKDMRRSYRSKKFLNILDKVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQAR 340
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ V+
Sbjct: 341 FSSAFTFQYSIRPGTPAATMENQIPKEVV 369
>gi|433463727|ref|ZP_20421269.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Halobacillus
sp. BAB-2008]
gi|432187169|gb|ELK44496.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Halobacillus
sp. BAB-2008]
Length = 274
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K +GCQMN +DTEV+ IL++ GY + +EAD+IL+ TCAIRENAE KV+ +
Sbjct: 75 KYLIRTYGCQMNEHDTEVMAGILEAMGYESTDTAKEADIILLNTCAIRENAENKVFGEIG 134
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL-A 170
+ +K + L +GV GCM+ E + +L+K +DL+ G + LP L+
Sbjct: 135 HLKPLKTENPN-----LILGVCGCMSQEESVVNRILKKHPFIDLIFGTHNIHKLPELVQE 189
Query: 171 LTYSNQTAINV 181
+ + I+V
Sbjct: 190 AVFGKEMVIDV 200
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALS 52
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+
Sbjct: 219 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDIIQEVRHLA 261
>gi|392412140|ref|YP_006448747.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfomonile tiedjei DSM 6799]
gi|390625276|gb|AFM26483.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfomonile tiedjei DSM 6799]
Length = 441
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GCQMN +D+E + ++L G S + P A+V+++ TC+IRE AE KV+ L +
Sbjct: 7 YIETYGCQMNEHDSEKMAAMLDKLGMSAASAPDTAEVLIINTCSIREKAEHKVYSALGKF 66
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+S+K R I V GC+A++ K LL+K LD V G +LPR+L
Sbjct: 67 KSLKT-----RKPDTAIIVAGCVAQQEKNKLLKKVPHLDAVLGTHHISELPRIL 115
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ V +FV+IM+GC N CTYC+VPFTRG E+SR M IL+EV L+ E+ NVN
Sbjct: 147 NPVCSFVTIMQGCSNFCTYCVVPFTRGPEQSRHMDEILEEVTRLAGTGIREITLLGQNVN 206
>gi|429729049|ref|ZP_19263737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
anaerobius VPI 4330]
gi|429146198|gb|EKX89258.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus
anaerobius VPI 4330]
Length = 482
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 11/133 (8%)
Query: 54 KVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K YF FGCQMN +D+E++ S+L+S GYS+ AD+++ TCA+RENAE KV+ L
Sbjct: 39 KSYFCLTFGCQMNEHDSEMLISMLESIGYSRALSEDTADIVIYNTCAVRENAELKVYGNL 98
Query: 113 RFYRSMKQIHKKHRTFP-LKIGVLGCM--AERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+S+K R P +KI V GCM E + + + K Q +DLV G + P LL
Sbjct: 99 GHLKSIK------RKRPDMKIVVCGCMMQQEHIVEEIKAKHQHVDLVFGTHNLYKFPELL 152
Query: 170 ALTY-SNQTAINV 181
A T+ S++ ++V
Sbjct: 153 ASTFESDKILVDV 165
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ AFV+IM GC+N CTYCIVP+TRGRERSR + I+ E+ L EV NVN
Sbjct: 184 IKAFVNIMYGCNNFCTYCIVPYTRGRERSRKPKDIISEIEDLVKGGVREVTLLGQNVN 241
>gi|375291116|ref|YP_005125656.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae 241]
gi|376245948|ref|YP_005136187.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae HC01]
gi|371580787|gb|AEX44454.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae 241]
gi|372108578|gb|AEX74639.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae HC01]
Length = 543
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 46 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 105
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS+K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 106 LRSVKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 160
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 161 NKRAEVEIVDSL-EQFPSVLP 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 184 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 243
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 244 NAYGVNFS 251
>gi|282916552|ref|ZP_06324310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus D139]
gi|283770356|ref|ZP_06343248.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
gi|282319039|gb|EFB49391.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus D139]
gi|283460503|gb|EFC07593.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
Length = 514
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY +
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATSDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
Length = 514
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ Y + EADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK+R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKNRPETL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E S A+V+IM GCD CTYCIVPFTRG+ERSR Q I++EVR L+ + Y E+
Sbjct: 207 KVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDIIEEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|376284954|ref|YP_005158164.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae 31A]
gi|376287963|ref|YP_005160529.1| 2-methylthioadenine synthetase [Corynebacterium diphtheriae BH8]
gi|371578469|gb|AEX42137.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae 31A]
gi|371585297|gb|AEX48962.1| 2-methylthioadenine synthase [Corynebacterium diphtheriae BH8]
Length = 543
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 46 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 105
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS+K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 106 LRSVKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 160
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 161 NKRAEVEIVDSL-EQFPSVLP 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 184 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 243
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 244 NAYGVNFS 251
>gi|283458476|ref|YP_003363102.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
gi|283134517|dbj|BAI65282.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18]
Length = 504
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+++GY + + D+++ TCA+RENA +++ L +
Sbjct: 23 TFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGNLGQLAPV 82
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ HK ++I V GC+A++ + +++EK +D+V G + LP LL N A
Sbjct: 83 KRAHKG-----MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERARHNHEA 137
Query: 179 INVLLSLDETYADITP 194
LL E + P
Sbjct: 138 QAELLESLEVFPSTLP 153
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN--- 67
S +VSI GC+N CT+CIVP RG+E+ R IL EV+AL D EV NVN
Sbjct: 161 SGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSYG 220
Query: 68 ----DTEVVWSILKS----SGYSKVN----HP------------READVILVMTCAIREN 103
D + +L++ G +V HP +V+ V+ ++
Sbjct: 221 VEFGDRQAFSKLLRACGEIEGLERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSG 280
Query: 104 AEGKVWDRLRFYRSMK--QIHKKHR--------TFPLKIGVLGCMAERLKKSLLEKEQAL 153
++ + D R YRS K I +K R T + +G G E + +L EQA
Sbjct: 281 SDKVLKDMRRSYRSKKFLNILEKVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQAR 340
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVL 182
A Y P A T NQ V+
Sbjct: 341 FSSAFTFQYSIRPGTPAATMENQIPKEVV 369
>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
Length = 453
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + GCQMN D+E + IL++ GYS + EAD++L TC+IR+NAE KV+ L
Sbjct: 9 KYHIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLG 68
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Q +KH+ L + V GC+A++ ++LL + LDLV GP L LL +
Sbjct: 69 -----RQAKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLDHLLEQVF 123
Query: 174 S-NQTAINVLLSLDETYADIT 193
+ NQ + ++E DIT
Sbjct: 124 NGNQVSATESAYIEE---DIT 141
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 24/115 (20%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S++A+V+I+ GC+ CTYCIVP RG E+SR +IL EV LS + Y E+ N++
Sbjct: 148 SITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEVNNLSQQGYKEITLLGQNIDA 207
Query: 69 --------------------TEVVWSILKSSGYSKV----NHPREADVILVMTCA 99
T++++ I G ++ +HPR L+ CA
Sbjct: 208 YGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFATSHPRYFSPRLIQACA 262
>gi|451811988|ref|YP_007448442.1| bifunctional tRNA thiolation and methylation protein [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451777890|gb|AGF48838.1| bifunctional tRNA thiolation and methylation protein [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 478
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y + FGCQMN D++ + IL GY+ V N+P EAD+IL TC++RE A+ KV+ L
Sbjct: 42 KIYIKTFGCQMNTYDSDKIIEILYKYGYTSVTNNPEEADLILFNTCSVREKAQEKVFSDL 101
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ +KQ + + IGV GC+A + +L + +D+V GP + LP L+
Sbjct: 102 GRAKILKQENPN-----IIIGVGGCVASQEGHEILNRAPYVDIVFGPQTLHRLPDLI 153
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C++C+VP+TRG E SRP + IL E+ L++ EV NVN
Sbjct: 187 TAFVSIMEGCSKYCSFCVVPYTRGTEVSRPFEDILIEIADLANNGIKEVTLLGQNVN 243
>gi|58578929|ref|YP_197141.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ehrlichia
ruminantium str. Welgevonden]
gi|58417555|emb|CAI26759.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 450
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
L +Y + +GCQMNV D+ ++ +I+K G+S VN P EAD++++ TC IRE A K++
Sbjct: 5 LMQGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYS 64
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L +I K T L I V GC+A+ + + +D+V GP S LP L+
Sbjct: 65 EL------GRIRKIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIV 118
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAF+S+ GC+ C++C+VP+TRG E SR +++I E L+D E+ NVN
Sbjct: 152 VSAFISVQEGCNKFCSFCVVPYTRGEEYSRTVEAIFKEALILADSGIKEITLIGQNVN 209
>gi|409404603|ref|ZP_11253082.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum sp.
GW103]
gi|386436122|gb|EIJ48945.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum sp.
GW103]
Length = 446
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ KV+ + FGCQMN D++ + +L + G K + P EADVIL+ TC+IRE A+ KV+
Sbjct: 1 MQKKVFIKTFGCQMNEYDSDKMADVLHVAEGLVKTDRPEEADVILLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R++K+ + L IGV GC+A + +++++ +D+V GP + LP+++
Sbjct: 61 SDLGRLRALKKDNPD-----LLIGVGGCVASQEGDAIIKRAPFVDMVFGPQTLHRLPQMI 115
Query: 170 A-LTYSNQTAINVLLSLDETYADITPKAVS 198
+ YS + +++ E + + P V
Sbjct: 116 SERRYSGRPQVDISFPEIEKFDHLPPARVE 145
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ +A+VSIM GC C+YC+VP+TRG E SR + +L EV L+D+ E+ NVN
Sbjct: 145 EGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFEDVLTEVAGLADQGVKEIMLLGQNVN 204
>gi|392374449|ref|YP_003206282.1| hypothetical protein DAMO_1387 [Candidatus Methylomirabilis
oxyfera]
gi|258592142|emb|CBE68447.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 438
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+ FGCQ N D+E + +L + GY+ EAD+IL+ TCAIRE AE KV+ RL
Sbjct: 3 KLKLITFGCQANDLDSERITGLLHNEGYTLTECEEEADLILLNTCAIREKAEHKVYSRLG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+ Q+ K+ R LKIG+ GC+A++ + LL + LD V GP +P LL
Sbjct: 63 SF----QVLKRERA-GLKIGICGCVAQQEGQVLLNRFPYLDFVVGPAQLTAIPSLL 113
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ ++ A+VSIM GCD+ CT+C+VPFTRGRERSRP Q I++E+R L + Y EV V
Sbjct: 140 QSNIRAWVSIMEGCDHFCTFCVVPFTRGRERSRPPQEIVEEIRGLKRQGYREVTLLGQTV 199
Query: 67 N 67
N
Sbjct: 200 N 200
>gi|218670177|ref|ZP_03519848.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli GR56]
Length = 155
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P Q++ D S KV+ + +GCQMNV D+ + L GY EAD++L+ TC
Sbjct: 24 PEQTLRDGSN--SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCH 81
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE A KV+ L R MK+ K + IGV GC+A+ + +L + A+D+V GP
Sbjct: 82 IREKAAEKVYSALGRLREMKK-KKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGP 140
Query: 160 DSYKDLPRLL 169
+Y LP L
Sbjct: 141 QTYHRLPEAL 150
>gi|430750229|ref|YP_007213137.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermobacillus composti KWC4]
gi|430734194|gb|AGA58139.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermobacillus composti KWC4]
Length = 517
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 11/169 (6%)
Query: 33 RGRERSRPM--QSILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + + +++ +E+R K + +GCQMN +DTEV+ + + G+ + R
Sbjct: 50 RGKEEIKVLYEEAVPEELRTFGKGKKYIIQTYGCQMNEHDTEVMKGLFEQMGFEWTDDRR 109
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EADVIL+ TCA+RENAE KV+ L +S+K + K L +GV GCM+ E + +
Sbjct: 110 EADVILLNTCAVRENAEDKVFGELGNLKSLK-LEKPE----LILGVCGCMSQEESVVGRI 164
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
L+K +DLV G + LP LL Y + + + S + + PK
Sbjct: 165 LQKHAYVDLVFGTHNIHRLPILLRDAYFGKEMVVEVWSKEGDIIENLPK 213
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + A+V+IM GCD CTYCIVP+TRG+ERSR + ++ EVR L+ + Y E+ NVN
Sbjct: 216 EGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDVIAEVRELARQGYREITLLGQNVN 275
>gi|312113950|ref|YP_004011546.1| RNA modification protein, MiaB family [Rhodomicrobium vannielii
ATCC 17100]
gi|311219079|gb|ADP70447.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
17100]
Length = 469
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
A +V+ + FGCQMNV D+E + L ++G+ + P +AD++++ TC IRE A KV+
Sbjct: 19 APEKRVFIKTFGCQMNVYDSERMADALGAAGFVETGAPEDADLVILNTCHIREKAAEKVF 78
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +++ ++ L I V GC+A+ + + + A+D++ GP SY LP L+
Sbjct: 79 SELGRLRVLREARRQDGGGNLMIAVAGCVAQ-AEGEEIARRAAVDIIVGPQSYHRLPELI 137
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
SAF+++ GCD CT+C+VP+TRG E SRP+ I++E + L+++ E+ NVN
Sbjct: 171 SAFLTVQEGCDKFCTFCVVPYTRGAEYSRPVAQIIEEAKRLAERGVREITLLGQNVN--- 227
Query: 71 VVWSILKSSG 80
W+ SG
Sbjct: 228 -AWAGEGPSG 236
>gi|418563261|ref|ZP_13127702.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21262]
gi|371971386|gb|EHO88787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21262]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|417901652|ref|ZP_12545528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21266]
gi|341845491|gb|EGS86693.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21266]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|258416055|ref|ZP_05682323.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9763]
gi|257839203|gb|EEV63679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9763]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+ NV
Sbjct: 210 EGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLGQNV 269
Query: 67 N 67
N
Sbjct: 270 N 270
>gi|443673334|ref|ZP_21138402.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Rhodococcus sp. AW25M09]
gi|443414149|emb|CCQ16740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Rhodococcus sp. AW25M09]
Length = 526
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 45 LDEVRALSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
L + A+S + Y GCQMNV+D+E + +L+ +GY + +AD+++ TCA+REN
Sbjct: 22 LTDPSAMSPRSYEVRTHGCQMNVHDSERLSGLLEEAGYIPADSGTDADLVVFNTCAVREN 81
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
A+ K++ L R K R ++I V GC+A++ + +++EK +D+V G +
Sbjct: 82 ADNKLYGNLGMLRPAKT-----RNPNMQIAVGGCLAQKDRNTVVEKAPWVDVVFGTHNIG 136
Query: 164 DLPRLLALTYSNQTA-INVLLSLD 186
LP LL N+ A + +L SLD
Sbjct: 137 SLPVLLERARHNEQAQVEILESLD 160
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VSI GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 171 ESAYAGWVSISVGCNNTCTFCIVPALRGKEIDRRPGDILAEVQALVDQGVLEVTLLGQNV 230
Query: 67 NDTEVVWSILKSSGYSKVNHPRE--ADVILVMTCAIRENAEGKVWDRLRF 114
N + ++ N PR+ A L+ C E E R+RF
Sbjct: 231 N--------AYGASFADPNMPRDRGAFASLLTACGSIEGLE-----RVRF 267
>gi|82750892|ref|YP_416633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus RF122]
gi|123727480|sp|Q2YXS2.1|MIAB_STAAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|82656423|emb|CAI80843.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|379021003|ref|YP_005297665.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus subsp.
aureus M013]
gi|386728979|ref|YP_006195362.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus 71193]
gi|387602570|ref|YP_005734091.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ST398]
gi|404478634|ref|YP_006710064.1| hypothetical protein C248_1326 [Staphylococcus aureus 08BA02176]
gi|418310560|ref|ZP_12922099.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21331]
gi|418950186|ref|ZP_13502382.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-160]
gi|418980640|ref|ZP_13528416.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus DR10]
gi|283470508|emb|CAQ49719.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ST398]
gi|359830312|gb|AEV78290.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus subsp.
aureus M013]
gi|365236612|gb|EHM77499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21331]
gi|375377559|gb|EHS81018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-160]
gi|379991615|gb|EIA13084.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus DR10]
gi|384230272|gb|AFH69519.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440123|gb|AFR73316.1| hypothetical protein C248_1326 [Staphylococcus aureus 08BA02176]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|146329852|ref|YP_001210121.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
VCS1703A]
gi|229890515|sp|A5EXA7.1|MIAB_DICNV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|146233322|gb|ABQ14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus
VCS1703A]
Length = 456
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 13/130 (10%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCA 99
MQ++L V Y E +GCQMN D+ + ++LK+S G + V P EADV+L+ TC+
Sbjct: 1 MQTVLKHV-------YIETYGCQMNEYDSSKMLAVLKNSHGITPVATPEEADVLLLNTCS 53
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
+RE A+ KV+ +L ++S+K+ K H L IGV GC+A + + + + +D+V GP
Sbjct: 54 VREKAQEKVFSQLGRWKSLKE-RKPH----LIIGVGGCVASQEGEMIRRRAPEVDVVFGP 108
Query: 160 DSYKDLPRLL 169
+ LP L+
Sbjct: 109 QTLHRLPNLI 118
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+A+VS+M GC CTYC+VP+TRG E SRP +L E L+ + E+ NVN
Sbjct: 151 TAYVSVMEGCSKYCTYCVVPYTRGAEISRPFDDVLAECATLAAQGVREINLLGQNVN 207
>gi|414176964|ref|ZP_11431193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
broomeae ATCC 49717]
gi|410887117|gb|EKS34929.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Afipia
broomeae ATCC 49717]
Length = 475
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D + + L G+ + + +AD++++ TC IRE A KV+ L
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDTLAPEGFVETANADDADLVILNTCHIREKASEKVYSELG 65
Query: 114 FYRSMK-QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R+ K + + R +KI V GC+A+ ++ + +D+V GP SY LP+LLA
Sbjct: 66 RLRTAKDEAARNGRE--MKIAVAGCVAQAEGSEIIRRAPVVDVVVGPQSYHHLPQLLAKA 123
Query: 173 YSNQTAINVLLSLDETYADI 192
++ A+ +++ +A +
Sbjct: 124 KTDGRAVETEFPVEDKFASL 143
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S+FV++ GCD CT+C+VP+TRG E SRP+ I+D+V+ L+D E+ NVN
Sbjct: 156 ISSFVTVQEGCDKFCTFCVVPYTRGMEVSRPVARIVDDVKRLADNGVREITLIGQNVN 213
>gi|422745475|ref|ZP_16799414.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320140890|gb|EFW32737.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA131]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + +GCQMN D + +L + GYS + EADV+++ TC IRE A KV+ L
Sbjct: 3 KAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELG 62
Query: 114 FYRSMK--QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K + H T +I V GC+A+ + +L + A+D+V GP SY LP LL
Sbjct: 63 RLRVLKGERAESGHDT---RIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLL 117
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+ F+++ GCD C +C+VP+TRG E SR + +++DE R L + E+ NVN
Sbjct: 147 VTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVDEARRLVEGGVREITLIGQNVN 204
>gi|57651862|ref|YP_186168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus COL]
gi|87160782|ref|YP_493882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88195002|ref|YP_499802.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|151221413|ref|YP_001332235.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newman]
gi|161509458|ref|YP_001575117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142526|ref|ZP_03567019.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452591|ref|ZP_05700597.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5948]
gi|262048179|ref|ZP_06021066.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
gi|262051352|ref|ZP_06023575.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
gi|282920536|ref|ZP_06328257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9765]
gi|284024285|ref|ZP_06378683.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus 132]
gi|294848288|ref|ZP_06789035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9754]
gi|304381143|ref|ZP_07363796.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014483|ref|YP_005290719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus VC40]
gi|384861885|ref|YP_005744605.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384869827|ref|YP_005752541.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus T0131]
gi|415686484|ref|ZP_11450573.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417649432|ref|ZP_12299231.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21189]
gi|418281421|ref|ZP_12894232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21178]
gi|418284601|ref|ZP_12897318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21209]
gi|418317632|ref|ZP_12929048.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21232]
gi|418570835|ref|ZP_13135096.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21283]
gi|418579126|ref|ZP_13143221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418642893|ref|ZP_13205079.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-24]
gi|418648229|ref|ZP_13210274.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-88]
gi|418649345|ref|ZP_13211373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-91]
gi|418660127|ref|ZP_13221769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873503|ref|ZP_13427798.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-125]
gi|418903505|ref|ZP_13457546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906228|ref|ZP_13460255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911899|ref|ZP_13465882.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925529|ref|ZP_13479431.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928552|ref|ZP_13482438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418947382|ref|ZP_13499756.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955535|ref|ZP_13507475.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-189]
gi|422742757|ref|ZP_16796757.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|424785125|ref|ZP_18211928.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus CN79]
gi|440706013|ref|ZP_20886762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21282]
gi|440734738|ref|ZP_20914350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|81694614|sp|Q5HGD9.1|MIAB_STAAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123407056|sp|Q2FZ02.1|MIAB_STAA8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123486136|sp|Q2FHE6.1|MIAB_STAA3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891005|sp|A6QGJ1.1|MIAB_STAAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891006|sp|A8Z1W3.1|MIAB_STAAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|57286048|gb|AAW38142.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus COL]
gi|87126756|gb|ABD21270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202560|gb|ABD30370.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|150374213|dbj|BAF67473.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368267|gb|ABX29238.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859809|gb|EEV82651.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5948]
gi|259160727|gb|EEW45748.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
gi|259163745|gb|EEW48300.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
gi|282594198|gb|EFB99185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9765]
gi|294825088|gb|EFG41510.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9754]
gi|302751114|gb|ADL65291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340126|gb|EFM06067.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198534|gb|EFU28863.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320143843|gb|EFW35615.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313962|gb|AEB88375.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus T0131]
gi|329727801|gb|EGG64252.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21189]
gi|365165243|gb|EHM57071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21178]
gi|365173149|gb|EHM63736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21209]
gi|365244900|gb|EHM85552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21232]
gi|371983015|gb|EHP00163.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21283]
gi|374363180|gb|AEZ37285.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus VC40]
gi|375016006|gb|EHS09650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-24]
gi|375026646|gb|EHS20025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-88]
gi|375029718|gb|EHS23043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-91]
gi|375033017|gb|EHS26228.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366040|gb|EHS70052.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-125]
gi|375371018|gb|EHS74810.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-189]
gi|375376125|gb|EHS79674.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697153|gb|EHT21508.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725277|gb|EHT49392.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG547]
gi|377738464|gb|EHT62473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742520|gb|EHT66505.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744598|gb|EHT68575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765528|gb|EHT89378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|421956535|gb|EKU08864.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus CN79]
gi|436431766|gb|ELP29119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507544|gb|ELP43224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21282]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|49483455|ref|YP_040679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MRSA252]
gi|253731911|ref|ZP_04866076.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257425346|ref|ZP_05601771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428007|ref|ZP_05604405.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430640|ref|ZP_05607022.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433400|ref|ZP_05609758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus E1410]
gi|257436242|ref|ZP_05612289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M876]
gi|258423867|ref|ZP_05686752.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9635]
gi|282903847|ref|ZP_06311735.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C160]
gi|282905610|ref|ZP_06313465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908586|ref|ZP_06316416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910864|ref|ZP_06318667.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914069|ref|ZP_06321856.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M899]
gi|282918991|ref|ZP_06326726.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C427]
gi|282924114|ref|ZP_06331790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C101]
gi|283958035|ref|ZP_06375486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501101|ref|ZP_06666952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510063|ref|ZP_06668771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M809]
gi|293526649|ref|ZP_06671334.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M1015]
gi|295427779|ref|ZP_06820411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591263|ref|ZP_06949901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|384547535|ref|YP_005736788.1| hypothetical protein SAOV_1294 [Staphylococcus aureus subsp. aureus
ED133]
gi|384550049|ref|YP_005739301.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384867822|ref|YP_005748018.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830827|ref|YP_006237481.1| hypothetical protein SAEMRSA15_11270 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387780400|ref|YP_005755198.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|415683881|ref|ZP_11449083.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
aureus CGS00]
gi|416839343|ref|ZP_11902737.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O11]
gi|417797911|ref|ZP_12445097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21310]
gi|417887012|ref|ZP_12531151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21195]
gi|417891742|ref|ZP_12535799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21200]
gi|417896062|ref|ZP_12540029.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21235]
gi|417903382|ref|ZP_12547229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21269]
gi|418282932|ref|ZP_12895689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21202]
gi|418314153|ref|ZP_12925632.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21334]
gi|418566690|ref|ZP_13131063.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|418582126|ref|ZP_13146204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597696|ref|ZP_13161218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|418603172|ref|ZP_13166563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|418646140|ref|ZP_13208255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-55]
gi|418655440|ref|ZP_13217300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-105]
gi|418875228|ref|ZP_13429488.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418889085|ref|ZP_13443221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418891925|ref|ZP_13446040.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897830|ref|ZP_13451900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900700|ref|ZP_13454757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909003|ref|ZP_13463006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917087|ref|ZP_13471046.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922874|ref|ZP_13476791.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982205|ref|ZP_13529913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985874|ref|ZP_13533560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|418993913|ref|ZP_13541549.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG290]
gi|421150244|ref|ZP_15609900.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|81651243|sp|Q6GHE3.1|MIAB_STAAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49241584|emb|CAG40270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|253724321|gb|EES93050.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257271803|gb|EEV03941.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274848|gb|EEV06335.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278768|gb|EEV09387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281493|gb|EEV11630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus E1410]
gi|257284524|gb|EEV14644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M876]
gi|257845896|gb|EEV69925.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9635]
gi|282314086|gb|EFB44478.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C101]
gi|282316801|gb|EFB47175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C427]
gi|282322137|gb|EFB52461.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M899]
gi|282325469|gb|EFB55778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327648|gb|EFB57931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330902|gb|EFB60416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595465|gb|EFC00429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C160]
gi|283790184|gb|EFC29001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920721|gb|EFD97784.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M1015]
gi|291096106|gb|EFE26367.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467007|gb|EFF09525.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M809]
gi|295128137|gb|EFG57771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576149|gb|EFH94865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|298694584|gb|ADI97806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302332898|gb|ADL23091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JKD6159]
gi|312438327|gb|ADQ77398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194179|gb|EFU24572.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
aureus CGS00]
gi|323441074|gb|EGA98781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O11]
gi|334277033|gb|EGL95272.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21310]
gi|341840963|gb|EGS82435.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21235]
gi|341850003|gb|EGS91136.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21269]
gi|341851028|gb|EGS91957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21200]
gi|341858434|gb|EGS99224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21195]
gi|344177502|emb|CCC87971.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|365168529|gb|EHM59867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21202]
gi|365234291|gb|EHM75229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21334]
gi|371969960|gb|EHO87398.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|374393758|gb|EHQ65062.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|374393901|gb|EHQ65204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|375021606|gb|EHS15102.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-55]
gi|375037156|gb|EHS30209.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-105]
gi|377703168|gb|EHT27484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704486|gb|EHT28795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705692|gb|EHT29996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710536|gb|EHT34774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731257|gb|EHT55314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736197|gb|EHT60227.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377745963|gb|EHT69938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG290]
gi|377750261|gb|EHT74199.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377754041|gb|EHT77951.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|377754595|gb|EHT78504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377760865|gb|EHT84741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|377770288|gb|EHT94050.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|385196219|emb|CCG15841.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|394329634|gb|EJE55736.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newbould 305]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|443639819|ref|ZP_21123820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21196]
gi|443406470|gb|ELS65050.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21196]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD C YCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCIYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|418559142|ref|ZP_13123688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21252]
gi|371975433|gb|EHO92727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21252]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|418321587|ref|ZP_12932926.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus VCU006]
gi|365224202|gb|EHM65467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus VCU006]
Length = 415
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|15924282|ref|NP_371816.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926875|ref|NP_374408.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus N315]
gi|21282904|ref|NP_645992.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MW2]
gi|49486131|ref|YP_043352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSSA476]
gi|148267782|ref|YP_001246725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JH9]
gi|150393841|ref|YP_001316516.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JH1]
gi|156979613|ref|YP_001441872.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus Mu3]
gi|253733470|ref|ZP_04867635.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006079|ref|ZP_05144680.2| hypothetical protein SauraM_06400 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795652|ref|ZP_05644631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9781]
gi|258421638|ref|ZP_05684562.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9719]
gi|258434794|ref|ZP_05688868.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
gi|258444630|ref|ZP_05692959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8115]
gi|258447537|ref|ZP_05695681.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6300]
gi|258449379|ref|ZP_05697482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6224]
gi|258454758|ref|ZP_05702722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5937]
gi|269202909|ref|YP_003282178.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus ED98]
gi|282892780|ref|ZP_06301015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8117]
gi|282927634|ref|ZP_06335250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A10102]
gi|295406229|ref|ZP_06816036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8819]
gi|296274850|ref|ZP_06857357.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MR1]
gi|297244457|ref|ZP_06928340.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8796]
gi|300912143|ref|ZP_07129586.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH70]
gi|384864519|ref|YP_005749878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|385781520|ref|YP_005757691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|387150435|ref|YP_005741999.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
gi|415691142|ref|ZP_11453381.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651210|ref|ZP_12300973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21172]
gi|417802625|ref|ZP_12449682.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21318]
gi|417892236|ref|ZP_12536290.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21201]
gi|417898390|ref|ZP_12542310.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21259]
gi|418424433|ref|ZP_12997555.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS1]
gi|418430268|ref|ZP_13003184.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS3a]
gi|418433234|ref|ZP_13006011.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS4]
gi|418436905|ref|ZP_13008707.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS5]
gi|418439777|ref|ZP_13011484.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS6]
gi|418442829|ref|ZP_13014431.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS7]
gi|418454712|ref|ZP_13025974.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418457588|ref|ZP_13028791.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418568964|ref|ZP_13133304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21272]
gi|418572271|ref|ZP_13136483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21333]
gi|418599718|ref|ZP_13163198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21343]
gi|418638108|ref|ZP_13200411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654665|ref|ZP_13216561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-99]
gi|418662198|ref|ZP_13223751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878141|ref|ZP_13432376.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880971|ref|ZP_13435190.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883899|ref|ZP_13438094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886554|ref|ZP_13440702.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418894992|ref|ZP_13449087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914390|ref|ZP_13468362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920371|ref|ZP_13474304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931363|ref|ZP_13485204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418934195|ref|ZP_13488018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988114|ref|ZP_13535787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991156|ref|ZP_13538817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419784943|ref|ZP_14310701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768022|ref|ZP_18195315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CM05]
gi|443636863|ref|ZP_21120956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21236]
gi|448741809|ref|ZP_21723766.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus KT/314250]
gi|81649395|sp|Q6G9S1.1|MIAB_STAAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81704466|sp|Q7A110.1|MIAB_STAAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81705771|sp|Q7A5W3.1|MIAB_STAAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81781679|sp|Q99UI1.1|MIAB_STAAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891002|sp|A7X1T3.1|MIAB_STAA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891003|sp|A6U1B1.1|MIAB_STAA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891004|sp|A5ISH6.1|MIAB_STAA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|13701092|dbj|BAB42387.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247062|dbj|BAB57454.1| similar to tRNA 2-methylthioadenosine synthase [Staphylococcus
aureus subsp. aureus Mu50]
gi|21204343|dbj|BAB95040.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244574|emb|CAG43003.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|147740851|gb|ABQ49149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus JH9]
gi|149946293|gb|ABR52229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus JH1]
gi|156721748|dbj|BAF78165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253728524|gb|EES97253.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257789624|gb|EEV27964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9781]
gi|257842324|gb|EEV66749.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9719]
gi|257849155|gb|EEV73137.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
gi|257850123|gb|EEV74076.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8115]
gi|257853728|gb|EEV76687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6300]
gi|257857367|gb|EEV80265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6224]
gi|257863141|gb|EEV85905.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5937]
gi|262075199|gb|ACY11172.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus ED98]
gi|282590637|gb|EFB95714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A10102]
gi|282764777|gb|EFC04902.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8117]
gi|285816974|gb|ADC37461.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
gi|294968817|gb|EFG44839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8819]
gi|297178487|gb|EFH37733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8796]
gi|300886389|gb|EFK81591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH70]
gi|312829686|emb|CBX34528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315131086|gb|EFT87070.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727394|gb|EGG63850.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21172]
gi|334274261|gb|EGL92583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21318]
gi|341848423|gb|EGS89586.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21259]
gi|341858203|gb|EGS99004.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21201]
gi|364522509|gb|AEW65259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371978149|gb|EHO95399.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21272]
gi|371984755|gb|EHP01864.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21333]
gi|374396376|gb|EHQ67617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21343]
gi|375014490|gb|EHS08171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023332|gb|EHS16795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-3]
gi|375036889|gb|EHS29950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694263|gb|EHT18628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694798|gb|EHT19162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714645|gb|EHT38844.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714986|gb|EHT39184.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377719902|gb|EHT44072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377723278|gb|EHT47403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725507|gb|EHT49620.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731864|gb|EHT55917.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757892|gb|EHT81780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765730|gb|EHT89579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377770938|gb|EHT94697.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383363544|gb|EID40876.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718663|gb|EIK06621.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS3a]
gi|387720340|gb|EIK08252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS1]
gi|387725674|gb|EIK13278.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS4]
gi|387728009|gb|EIK15509.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS5]
gi|387730739|gb|EIK18100.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS6]
gi|387737494|gb|EIK24560.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS7]
gi|387745827|gb|EIK32577.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387747320|gb|EIK34029.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402348659|gb|EJU83638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CM05]
gi|408423478|emb|CCJ10889.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408425468|emb|CCJ12855.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408427456|emb|CCJ14819.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408429443|emb|CCJ26608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408431431|emb|CCJ18746.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408433425|emb|CCJ20710.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408435416|emb|CCJ22676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408437401|emb|CCJ24644.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|443406840|gb|ELS65410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21236]
gi|445547447|gb|ELY15716.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus KT/314250]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|418448835|ref|ZP_13020226.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS9]
gi|418451656|ref|ZP_13022990.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS10]
gi|387737744|gb|EIK24804.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS9]
gi|387744537|gb|EIK31301.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS10]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|418317263|ref|ZP_12928687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21340]
gi|365239635|gb|EHM80437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21340]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|163852619|ref|YP_001640662.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens PA1]
gi|229890613|sp|A9VYZ9.1|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
PA1]
Length = 446
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + +GCQMN D + +L + GYS + EADV+++ TC IRE A KV+ L
Sbjct: 3 KAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELG 62
Query: 114 FYRSMK--QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K + H T +I V GC+A+ + +L + A+D+V GP SY LP LL
Sbjct: 63 RLRVLKGERAESGHDT---RIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLL 117
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+ F+++ GCD C +C+VP+TRG E SR + +++DE R L + E+ NVN
Sbjct: 147 VTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVDEARRLVEGGVREITLIGQNVN 204
>gi|25028399|ref|NP_738453.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Corynebacterium efficiens YS-314]
gi|23493684|dbj|BAC18653.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 600
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ +GY+ D+I+ TCA+RENA+ +++ L R++
Sbjct: 109 TFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGNLRAV 168
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H ++I V GC+A++ K ++++K +D+V G + LP LL NQ A
Sbjct: 169 KENHPG-----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHNQKA 223
Query: 179 -INVLLSLDETYADITP 194
+ ++ SL E + + P
Sbjct: 224 EVEIVDSL-EQFPSVLP 239
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 243 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNV 302
Query: 67 N 67
N
Sbjct: 303 N 303
>gi|57238993|ref|YP_180129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ehrlichia
ruminantium str. Welgevonden]
gi|81637928|sp|Q5HBR5.1|MIAB_EHRRW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|57161072|emb|CAH57979.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 445
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y + +GCQMNV D+ ++ +I+K G+S VN P EAD++++ TC IRE A K++ L
Sbjct: 4 LYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSEL-- 61
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
+I K T L I V GC+A+ + + +D+V GP S LP L+
Sbjct: 62 ----GRIRKIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIV 113
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSAF+S+ GC+ C++C+VP+TRG E SR +++I E L+D E+ NVN
Sbjct: 147 VSAFISVQEGCNKFCSFCVVPYTRGEEYSRTVEAIFKEALILADSGIKEITLIGQNVN 204
>gi|405377519|ref|ZP_11031460.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF142]
gi|397325956|gb|EJJ30280.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF142]
Length = 469
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D+ + L GY EAD++L+ TC IRE A KV+
Sbjct: 21 SRKVFIKTYGCQMNVYDSMRMSDALARDGYETTEDMEEADLVLLNTCHIREKAAEKVYSA 80
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R MK+ K + IGV GC+A+ + +L + A+D+V GP +Y LP L
Sbjct: 81 LGRLREMKK-RKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRR 139
Query: 172 TYSNQTAINVLLSLDETY 189
I+ ++++ +
Sbjct: 140 AKEGHRVIDTEYAIEDKF 157
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I++E L D E+ NVN
Sbjct: 173 VTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVSQIVEEAMKLVDGGVREITLLGQNVN 230
>gi|259507456|ref|ZP_05750356.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
gi|259164944|gb|EEW49498.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314]
Length = 533
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ +GY+ D+I+ TCA+RENA+ +++ L R++
Sbjct: 42 TFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGNLRAV 101
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H ++I V GC+A++ K ++++K +D+V G + LP LL NQ A
Sbjct: 102 KENHPG-----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHNQKA 156
Query: 179 -INVLLSLDETYADITP 194
+ ++ SL E + + P
Sbjct: 157 EVEIVDSL-EQFPSVLP 172
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 176 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNV 235
Query: 67 N 67
N
Sbjct: 236 N 236
>gi|418427428|ref|ZP_13000440.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS2]
gi|387719015|gb|EIK06971.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS2]
Length = 514
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|406911493|gb|EKD51272.1| hypothetical protein ACD_62C00293G0008 [uncultured bacterium]
Length = 445
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y FGCQMN +D+ + S+L GY K EAD+I++ TC+IR AE K++ L
Sbjct: 3 KAYIRTFGCQMNEHDSRQMLSLLAELGYEKTQEVTEADIIVLNTCSIRAKAEHKIYSELG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K+ + + L I V GC+A++ K+ L ++ +D++ GPD LP L+
Sbjct: 63 RLRPLKKTNPQ-----LIICVAGCVAQQEKQKLSKRFPLIDIILGPDQIGTLPSLV 113
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V +FV+I +GCDN C YCIVP+ RGRE SRP Q I+DE+ L+++ EV NVN
Sbjct: 153 VKSFVNIQKGCDNFCAYCIVPYVRGRESSRPPQDIIDEINKLTERGVKEVTLLGQNVN 210
>gi|374608226|ref|ZP_09681025.1| RNA modification enzyme, MiaB family [Mycobacterium tusciae JS617]
gi|373553758|gb|EHP80345.1| RNA modification enzyme, MiaB family [Mycobacterium tusciae JS617]
Length = 539
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
+GCQMNV+D+E + +L+++GY K +ADV++ TCA+RENA+ K++ L
Sbjct: 45 TYGCQMNVHDSERLAGLLEAAGYRKAADGTDADVVVFNTCAVRENADNKLYGNLSHLAP- 103
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN-QT 177
+KH ++I V GC+A++ + S+L++ +D+V G + LP LL N Q
Sbjct: 104 ----RKHAEPDMQIAVGGCLAQKDRDSVLKRAPWVDVVFGTHNIGSLPALLDRARHNRQA 159
Query: 178 AINVLLSLDE 187
+ ++ +L+E
Sbjct: 160 QVEIVEALEE 169
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VS+ GC+N CT+CIVP RG+E R +L EV +L D+ E+ NV
Sbjct: 179 ESAYAAWVSVSVGCNNTCTFCIVPALRGKEVDRRPGDVLAEVTSLVDQGVLEITLLGQNV 238
Query: 67 N 67
N
Sbjct: 239 N 239
>gi|338741585|ref|YP_004678547.1| tRNA modification enzyme MiaB isopentenyl-adenosine A37 tRNA
methylthiolase [Hyphomicrobium sp. MC1]
gi|337762148|emb|CCB67983.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Hyphomicrobium sp. MC1]
Length = 449
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y + FGCQMNV D+E + L GY+ + AD++++ TC IRE A KV+ L
Sbjct: 10 YLKTFGCQMNVYDSERMTEALARDGYAATDDIAGADLVILNTCHIREKAAEKVYSDLGRI 69
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R MK K+ + I V GC+A+ + + ++ A+DLV GP SY LP L+ T +
Sbjct: 70 RDMKDARKRDGKETV-IAVAGCVAQAEGREITTRQPAVDLVIGPQSYHRLPELIERTANT 128
Query: 176 QTAI 179
+ I
Sbjct: 129 REHI 132
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
S SAF+++ GCD CT+C+VP+TRG E SR + + E R L E+ NVN
Sbjct: 154 SPSAFLTVQEGCDKFCTFCVVPYTRGAEFSRSLVKLEAEARELIAAGAKELVLLGQNVNA 213
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILVMTCA 99
E++ + G ++ +HPR+ D L+ A
Sbjct: 214 YHGEGPDGRTIGLAELIRRLADIEGVERIRYTTSHPRDMDADLIAAHA 261
>gi|334128879|ref|ZP_08502757.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
gi|333386121|gb|EGK57341.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
Length = 437
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 19/181 (10%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+S+GY + +AD+IL+ TC +RE AE KV+ ++ + +
Sbjct: 9 VYGCQMNIADAERMEGQLQSAGYVRTEEMADADIILINTCCVRETAEDKVYGKIGEIKKI 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LTYSNQT 177
K+ + K L G+ GCMA++ +L+ + +D V G ++L R++A + +
Sbjct: 69 KEQNPK-----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIAAEHSP 123
Query: 178 AINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI----------YVDGRWRRKLGQQM 227
++V LS D A+ P V+ G+ S +V + YV GR R + +++
Sbjct: 124 VVDVTLS-DSEIAENLP--VARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEV 180
Query: 228 V 228
V
Sbjct: 181 V 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V IM GC+N CTYCIVP+ RGRERSR + ++ EVR + Y EV NVN
Sbjct: 147 SAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVAEGYREVTLLGQNVN 203
>gi|334562951|ref|ZP_08515942.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Corynebacterium bovis DSM 20582]
Length = 527
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 39 RPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTC 98
RP +S EVR FGCQMNV+D+E + +L+ SGY DV++ TC
Sbjct: 21 RPERSRTYEVR---------TFGCQMNVHDSERLSGLLEDSGYVPAAAAETPDVVVFNTC 71
Query: 99 AIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
A+RENA+ +++ L +++K H ++I V GCMA++ +++++++ +D+V G
Sbjct: 72 AVRENADNRLYGTLGQLKAVKDRHPG-----MQIAVGGCMAQKDRQTVVDRAPWVDVVFG 126
Query: 159 PDSYKDLPRLLALTYSNQTA-INVLLSLDETYADITP 194
+ LP LLA + N A + ++ SL E + + P
Sbjct: 127 THNIGSLPTLLARSAHNSRAEVEIVDSL-EQFPSVLP 162
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RGRE+ R IL EVRAL ++ EV NV
Sbjct: 166 ESAYAGWVSVSVGCNNTCTFCIVPSLRGREQDRRPGDILAEVRALVEQGVTEVTLLGQNV 225
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 226 NAYGVHFS 233
>gi|229890689|sp|Q8FPD5.2|MIAB_COREF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 524
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
FGCQMNV+D+E + +L+ +GY+ D+I+ TCA+RENA+ +++ L R++
Sbjct: 33 TFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGNLRAV 92
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H ++I V GC+A++ K ++++K +D+V G + LP LL NQ A
Sbjct: 93 KENHPG-----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHNQKA 147
Query: 179 -INVLLSLDETYADITP 194
+ ++ SL E + + P
Sbjct: 148 EVEIVDSL-EQFPSVLP 163
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E+ R IL EV+AL D+ EV NV
Sbjct: 167 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVSEVTLLGQNV 226
Query: 67 N 67
N
Sbjct: 227 N 227
>gi|377564104|ref|ZP_09793431.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
sputi NBRC 100414]
gi|377528737|dbj|GAB38596.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Gordonia
sputi NBRC 100414]
Length = 511
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
+GCQMNV+D+E + +L+ +GY + + +AD+++ TCAIRENA+ K++ L + +
Sbjct: 18 TYGCQMNVHDSERIAGLLEDAGYVRADEDGDADLVVFNTCAIRENADNKLYGNLSHFAPV 77
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K R ++I V GC+A++ K ++L K +D+V G + LP LL N+ A
Sbjct: 78 KT-----RRPGMQIAVGGCLAQKDKDTVLRKAPWVDVVFGTHNIGSLPALLDRARHNEEA 132
Query: 179 -INVLLSLD 186
+ +L SL+
Sbjct: 133 QVEILDSLE 141
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ + S +VS+ GC+N CT+CIVP RG+E R +L EV+AL D+ EV NV
Sbjct: 152 DSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDVLAEVKALVDQGVLEVTLLGQNV 211
Query: 67 N 67
N
Sbjct: 212 N 212
>gi|253316429|ref|ZP_04839642.1| hypothetical protein SauraC_09846 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
Length = 514
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 33 RGRERSRPMQ--SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG++ R + I ++ R + ++ F + +GCQMN +DTEV+ IL++ GY
Sbjct: 44 RGKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDIN 103
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
ADVIL+ TCAIRENAE KV+ + + + KK R L IGV GCM+ E + +
Sbjct: 104 TADVILINTCAIRENAENKVFSEIGNLKHL----KKERPDIL-IGVCGCMSQEESVVNKI 158
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
L+ Q +D++ G + LP +L Y ++ +
Sbjct: 159 LKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|359409340|ref|ZP_09201808.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[SAR116 cluster alpha proteobacterium HIMB100]
gi|356676093|gb|EHI48446.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[SAR116 cluster alpha proteobacterium HIMB100]
Length = 457
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y + FGCQMNV D+E + +L +GY + EAD++++ TC IRE A KV+ L
Sbjct: 3 KLYIKTFGCQMNVYDSERMKDVLAPTGYMPTDALEEADMVILNTCHIREKASEKVFSDLG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
R +K + + + I V GC+A+ + ++ +D+V GP +Y LP L+A
Sbjct: 63 RLRQIKVRAAEQQNREMLIAVAGCVAQAEGDEITKRAPWVDMVVGPQTYHRLPELVA 119
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 5 LNEDSV----SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
L E++V +AF+S+ GCD C++C+VP+TRG E SRP Q I+ E R L E+
Sbjct: 143 LPEEAVPRGPAAFLSVQEGCDKFCSFCVVPYTRGAEFSRPAQQIITEARRLVASGTKEIT 202
Query: 61 GCQMNVN 67
NVN
Sbjct: 203 LLGQNVN 209
>gi|427712555|ref|YP_007061179.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 6312]
gi|427376684|gb|AFY60636.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 6312]
Length = 455
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S + FGCQMN D+E + IL+ GY V P +AD+IL TC+IR+NAE KV+
Sbjct: 4 SSSYHIITFGCQMNKADSERMAGILEGLGYGWVEDPNQADLILYNTCSIRDNAEHKVYSY 63
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L +Q +K LK+ V GC+A++ ++LL + LDL+ GP L LLA
Sbjct: 64 LG-----RQAKRKQENPNLKLVVAGCVAQQEGEALLRRMPELDLIMGPQYANRLDELLA 117
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 22/115 (19%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E +V+A+V+++ GC+ CTYC+VP TRG E+SR Q+I E+ L+ + Y E+ N+
Sbjct: 143 ESTVTAWVNVIYGCNERCTYCVVPGTRGIEQSRTPQAIKAEIEELAAQGYKEITLLGQNI 202
Query: 67 ND------------------TEVVWSILKSSGYSKV----NHPREADVILVMTCA 99
+ T+++++I G ++ +HPR L+ CA
Sbjct: 203 DAYGRDLPGISPEGRRQNTLTDLLYTIHDVPGIERIRFATSHPRYFTERLIQACA 257
>gi|238028582|ref|YP_002912813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
glumae BGR1]
gi|237877776|gb|ACR30109.1| 2-methylthioadenine synthetase [Burkholderia glumae BGR1]
Length = 457
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KVY + FGCQMN D++ + +L ++ G K + P +ADVIL TC++RE A+ KV+
Sbjct: 1 MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDRPEDADVILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ L IGV GC+A + +++ + +DLV GP + LP+++
Sbjct: 61 SDLGRVRELKEAKPG-----LIIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPKMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S ++ +++ E + + P V
Sbjct: 116 DARRASGRSQVDITFPEIEKFDHLPPARV 144
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIM GC C+YC+VP+TRG E SRP+ +L E+ L+D+ EV NVN
Sbjct: 148 SAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVN 204
>gi|453073974|ref|ZP_21976772.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodococcus
triatomae BKS 15-14]
gi|452765460|gb|EME23717.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodococcus
triatomae BKS 15-14]
Length = 507
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 60 FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMK 119
FGCQMNV+D+E + +L+ +GY+K + D+++ TCA+RENA+ K++ L R K
Sbjct: 19 FGCQMNVHDSERLSGLLEEAGYTKATPGVDPDLLVFNTCAVRENADNKLYGTLGHLRPTK 78
Query: 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA- 178
H ++I V GC+A++ ++++++K +D+V G + LP LL N+ A
Sbjct: 79 DAHPG-----MQIAVGGCLAQKDRETVVKKAPWVDVVFGTHNIGSLPVLLERARHNEEAQ 133
Query: 179 INVLLSLD 186
+ +L SL+
Sbjct: 134 VEILDSLE 141
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VSI GC+N CT+CIVP RG+E R IL EV+AL ++ EV NV
Sbjct: 152 ESAYAGWVSISVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVNEGVLEVTLLGQNV 211
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 212 NSYGVSFA 219
>gi|401564532|ref|ZP_10805419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
gi|400188742|gb|EJO22884.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
Length = 437
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 19/181 (10%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+ +GY + +AD+IL+ TC +RE AE KV+ ++ + +
Sbjct: 9 VYGCQMNIADAERMEGQLQGAGYMRTEETADADIILINTCCVRETAEDKVYGKIGEIKKI 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ + K L G+ GCMA++ +L+ + +D V G ++L R++A + T+
Sbjct: 69 KEKNPK-----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIAAEHTS 123
Query: 179 -INVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI----------YVDGRWRRKLGQQM 227
++V LS D A+ P V+ G+ S +V + YV GR R + +++
Sbjct: 124 VVDVALS-DSEIAENLP--VARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRSPEEV 180
Query: 228 V 228
V
Sbjct: 181 V 181
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SA+V IM GC+N CTYCIVP+ RGRERSR + ++ EV+ + Y EV NVN
Sbjct: 147 SAWVPIMYGCNNYCTYCIVPYVRGRERSRSPEEVVAEVQRAVAEGYREVTLLGQNVN 203
>gi|337749959|ref|YP_004644121.1| protein MiaB [Paenibacillus mucilaginosus KNP414]
gi|336301148|gb|AEI44251.1| MiaB [Paenibacillus mucilaginosus KNP414]
Length = 459
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 43 SILDEVRALS-DKVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
SI +E+R L DK Y + +GCQMN +DTE + +L+ GY R+AD+IL+ TCA+
Sbjct: 6 SIPEELRELGRDKYYLIQTYGCQMNEHDTETIKGLLEGLGYRATEDRRQADIILLNTCAV 65
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAG 158
RENAE KV+ L + H K L +GV GCM+ E +L+K +DL+ G
Sbjct: 66 RENAEDKVFGELGHLK-----HLKTEKPSLLLGVCGCMSQEEATVNRILKKHPFVDLIFG 120
Query: 159 PDSYKDLPRLL-ALTYSNQTAINV 181
+ LP L+ +S + I V
Sbjct: 121 THNIHRLPFLVKEAMFSKEMVIEV 144
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + A+V+IM GCD CTYCIVP+TRG+ERSR + ++ EVR L+ + Y EV NVN
Sbjct: 160 EGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAEVRELARQGYKEVMLLGQNVN 219
>gi|334137185|ref|ZP_08510629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
gi|333605269|gb|EGL16639.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
Length = 494
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
+GCQMN +DTE + +L+ GY+ +EADVIL+ TCAIRENAE KV+ L + +
Sbjct: 57 TYGCQMNEHDTETMKGMLEELGYTSTEEKQEADVILLNTCAIRENAEDKVFGELGHLKHL 116
Query: 119 KQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176
K + K + L +GV GCM+ E + K +L+K +DL+ G + LP LL Y ++
Sbjct: 117 K-LEKPN----LVLGVCGCMSQEEGVVKRILQKHGHVDLIFGTHNIHRLPALLQDAYLSK 171
Query: 177 TAI 179
+
Sbjct: 172 EMV 174
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + A+V+IM GCD CTYCIVP+TRG+ERSR + +L EVR L+ + + E+ NVN
Sbjct: 193 EGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEVRDLARQGFKEITLLGQNVN 252
>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
Length = 514
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ GYS ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|359788118|ref|ZP_09291100.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359256074|gb|EHK58954.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 456
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KV+ +GCQMNV D++ + L + GYS + +AD++L+ TC IRE A KV+
Sbjct: 12 AKKVFVRTYGCQMNVYDSQRMTDALAADGYSPTSEIGDADLVLLNTCHIREKAAEKVYSE 71
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R +K + + IG+ GC+A+ + ++ + A+DLV GP +Y LP L
Sbjct: 72 LGRIREIKA-ERAATGREMLIGIAGCVAQAEGREIIRRAPAVDLVIGPQTYHRLPEALKR 130
Query: 172 TYSNQTAINVLLSLDETY 189
+ + +L++ +
Sbjct: 131 ARGGEKIVETDYALEDKF 148
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 17/106 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ EV NVN
Sbjct: 163 GVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNA 222
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILVMT 97
+++ + + G +++ +HPR+ D L++
Sbjct: 223 WHGEGPDGQEWGLGRLLFRLAEIPGLARLRYTTSHPRDMDDALIIA 268
>gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
Length = 437
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 59 VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM 118
V+GCQMN+ D E + L+++GY + +ADVIL+ TC +RE AE KV+ ++ + +
Sbjct: 9 VYGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIGEIKKV 68
Query: 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA 178
K+ H + L G+ GCMA++ ++L+ + +D V G ++L R++A + +T
Sbjct: 69 KERHPQ-----LIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAKRTP 123
Query: 179 INVLLSLD 186
+ V ++LD
Sbjct: 124 V-VDVALD 130
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
++SA+V IM GC+N CTYCIVP+ RGRERSR + ++ EVR + Y EV NVN
Sbjct: 145 TLSAWVPIMYGCNNYCTYCIVPYVRGRERSRMPEEVVAEVRRAAADGYREVTLLGQNVN 203
>gi|379722815|ref|YP_005314946.1| protein MiaB [Paenibacillus mucilaginosus 3016]
gi|386725590|ref|YP_006191916.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
mucilaginosus K02]
gi|378571487|gb|AFC31797.1| MiaB [Paenibacillus mucilaginosus 3016]
gi|384092715|gb|AFH64151.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
mucilaginosus K02]
Length = 490
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 43 SILDEVRALS-DKVYF-EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
SI +E+R L DK Y + +GCQMN +DTE + +L+ GY R+AD+IL+ TCA+
Sbjct: 37 SIPEELRELGRDKYYLIQTYGCQMNEHDTETIKGLLEGLGYRATEDRRQADIILLNTCAV 96
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAG 158
RENAE KV+ L + H K L +GV GCM+ E +L+K +DL+ G
Sbjct: 97 RENAEDKVFGELGHLK-----HLKTEKPSLLLGVCGCMSQEEATVNRILKKHPFVDLIFG 151
Query: 159 PDSYKDLPRLL-ALTYSNQTAINV 181
+ LP L+ +S + I V
Sbjct: 152 THNIHRLPFLVKEAMFSKEMVIEV 175
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + A+V+IM GCD CTYCIVP+TRG+ERSR + ++ EVR L+ + Y EV NVN
Sbjct: 191 EGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAEVRELARQGYKEVMLLGQNVN 250
>gi|119897069|ref|YP_932282.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azoarcus sp.
BH72]
gi|229890447|sp|A1K3J0.1|MIAB_AZOSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|119669482|emb|CAL93395.1| Conserved Hypothetical protein [Azoarcus sp. BH72]
Length = 449
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKS-SGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y FGCQMN D+E + +L + G +K ++P EADVIL TC++RE A+ KV+ L
Sbjct: 3 KLYIRTFGCQMNEYDSEKMADVLGAGEGIAKTDNPEEADVILFNTCSVREKAQEKVFHDL 62
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL- 171
+ +KQ+ L IGV GC+A + +++ + +D+V GP + LP L+A
Sbjct: 63 GRVKHLKQLKPD-----LIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPALIAAR 117
Query: 172 TYSNQTAINVLLSLDETYADITPKAV 197
S ++ +++ E + + P V
Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPARV 143
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ SAFVSIM GC CT+C+VP+TRG E SRP++ +L E+ L+++ EV NVN
Sbjct: 144 EGASAFVSIMEGCSKYCTFCVVPYTRGEEISRPLEDVLAEIAGLAEQGVKEVTLLGQNVN 203
Query: 68 DTEVVW--SILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
W I++ +G E D ++ C AE +R+R+ S
Sbjct: 204 ----AWRGEIVRDAG-------EEGDFAFLLECV----AEIPGIERIRYTTS 240
>gi|398349938|ref|YP_006395402.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Sinorhizobium fredii USDA 257]
gi|390125264|gb|AFL48645.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Sinorhizobium fredii USDA 257]
Length = 466
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P + + + KV+ + +GCQMNV D++ + L GY + +AD +L+ TC
Sbjct: 9 PKSPVAGDEHVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCH 68
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE A KV+ L R +K+ K + IGV GC+A+ +L + A+DLV GP
Sbjct: 69 IREKAAEKVYSELGRLRELKKT-KASEGREMVIGVAGCVAQAEGNEILRRAPAVDLVIGP 127
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADI-TPKAVSTDGR 202
+Y LP L S + + ++++ + + P T R
Sbjct: 128 QTYHRLPEALKRARSGERVVETDYAIEDKFEHLPAPDKAKTRAR 171
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L D E+ NVN
Sbjct: 172 GVTAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVAQIIAEAEKLVDGGVREITLLGQNVNA 231
Query: 69 -------------TEVVWSILKSSGYSKV----NHPREADVILV 95
+++W + + G +++ +HPR+ D LV
Sbjct: 232 WHGTGPDGRDWGLGDLLWRLGEIDGLARLRYTTSHPRDMDASLV 275
>gi|400536841|ref|ZP_10800375.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
colombiense CECT 3035]
gi|400329854|gb|EJO87353.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
colombiense CECT 3035]
Length = 514
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 31 FTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREA 90
F+RG +RS P + + A + +GCQMNV+D+E + +L+++GY + +A
Sbjct: 5 FSRG-DRS-PYHGPVTSMAAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAVEGADA 62
Query: 91 DVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEK 149
DV++ TCA+RENA+ K Y ++ + + R P ++I V GC+A++ + +LL K
Sbjct: 63 DVVVFNTCAVRENADNK------LYGNLSHLAPRKRGNPEMQIAVGGCLAQKDRDALLHK 116
Query: 150 EQALDLVAGPDSYKDLPRLLALTYSNQTA-INVLLSLDE 187
+D++ G + LP LL N+ A + + +L E
Sbjct: 117 APWVDVIFGTHNIGSLPTLLERARHNKVAQVEIAEALQE 155
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RG+E R IL EV +L D EV NV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPDDILAEVASLVDDGVLEVTLLGQNV 224
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 225 NAYGVSFA 232
>gi|417642888|ref|ZP_12292968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
VCU121]
gi|445059788|ref|YP_007385192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU121]
gi|443425845|gb|AGC90748.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
Length = 514
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ GYS ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDCL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYQEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|114571572|ref|YP_758252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Maricaulis
maris MCS10]
gi|122314895|sp|Q0AK79.1|MIAB_MARMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|114342034|gb|ABI67314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maricaulis maris MCS10]
Length = 456
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ + +GCQMNV D++ + +L GY P AD++++ TC IRE A KV+ L
Sbjct: 7 RLFIKTYGCQMNVYDSDRMKDVLTPLGYESAETPEGADLVILNTCHIREKAAEKVYSELG 66
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K +K + + I V GC+A+ ++++ +DLV GP +Y LP L+A +
Sbjct: 67 RLRPLKD--EKAASGGMTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQTYHKLPELIAQAH 124
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 21/113 (18%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ SAFV++ GCD CT+C+VP+TRG E SRP+ I+ E+RAL+ K EV NVN
Sbjct: 151 EGYSAFVTVQEGCDKFCTFCVVPYTRGAEWSRPVDQIVAEIRALAAKGIREVTLLGQNVN 210
Query: 68 ----------DTEVVWSILK-------SSGYSKV----NHPREADVILVMTCA 99
+ E W + + G ++ +HPR+ D +L+ A
Sbjct: 211 AFHGAPPSGREAEGAWGLGQLVRHVALIGGIERIRFTTSHPRDMDEVLIQAFA 263
>gi|222055271|ref|YP_002537633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter
daltonii FRC-32]
gi|221564560|gb|ACM20532.1| RNA modification enzyme, MiaB family [Geobacter daltonii FRC-32]
Length = 440
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y + FGCQMNV+D+E + +LK+ GY N AD+I++ TC++R AE KV++ L
Sbjct: 7 LYLQTFGCQMNVSDSEKIAGLLKNIGYRPTNDSSLADLIILNTCSVRARAEEKVYNHLVQ 66
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y+ +K+ K + IGV GC+A++ + LL LD V G + LP L+
Sbjct: 67 YKGLKRKRPK-----ILIGVGGCVAQQEGERLLLNIPHLDFVFGTHNLHLLPELVLSAEK 121
Query: 175 NQTAINVLLSLDETYADITPKAVSTDG 201
+ +++ D+ P ST+G
Sbjct: 122 GERQAETDFIDNDSRLDLFPVDNSTNG 148
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 17/110 (15%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ VS FV++M+GCDN C+YCIVP+ RGRE SR IL+E+ L+ K EV NVN
Sbjct: 147 NGVSRFVTVMQGCDNFCSYCIVPYVRGREISRRSADILEEISQLAAKGVKEVTLLGQNVN 206
Query: 68 DTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
LKS G E D + ++ R+ +E +RLRF S
Sbjct: 207 SYG-----LKSDG--------ELDFVTLL----RQVSEIPGIERLRFTTS 239
>gi|443490393|ref|YP_007368540.1| 2-methylthioadenine synthetase, MiaB_2 [Mycobacterium liflandii
128FXT]
gi|442582890|gb|AGC62033.1| 2-methylthioadenine synthetase, MiaB_2 [Mycobacterium liflandii
128FXT]
Length = 512
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Query: 51 LSDKVY-FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S + Y +GCQMNV+D+E + +L+++GY + +ADV++ TCA+RENA+ K
Sbjct: 1 MSARTYQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNK-- 58
Query: 110 DRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
Y ++ + + RT P ++I V GC+A++ + +LL K +D+V G + LP L
Sbjct: 59 ----LYGNLSHLAPRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPAL 114
Query: 169 LALTYSNQTA 178
L N+ A
Sbjct: 115 LDRARHNRVA 124
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + +A+VSI GC+N CT+CIVP RG+E R IL EV++L D E+ NV
Sbjct: 144 ESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRSPADILAEVQSLVDTGVVEITLLGQNV 203
Query: 67 NDTEVVWS 74
N V ++
Sbjct: 204 NAYGVSFA 211
>gi|221211289|ref|ZP_03584268.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD1]
gi|221168650|gb|EEE01118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD1]
Length = 457
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KVY + FGCQMN D++ + +L ++ G K + P +AD+IL TC++RE A+ KV+
Sbjct: 1 MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ L IGV GC+A + S++ + +DLV GP + LP+++
Sbjct: 61 SDLGRVRELKEAKPD-----LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S + +++ E + + P V
Sbjct: 116 DARRTSGRAQVDITFPEIEKFDHLPPARV 144
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C+YC+VP+TRG E SRP+ +L EV L+D+ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEVAGLADQGVREVTLLGQNVN 204
>gi|38234029|ref|NP_939796.1| hypothetical protein DIP1448 [Corynebacterium diphtheriae NCTC
13129]
gi|81564788|sp|Q6NGR0.1|MIAB_CORDI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|38200291|emb|CAE49976.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 516
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 84/141 (59%), Gaps = 9/141 (6%)
Query: 57 FEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
FEV FGCQMNV+D+E + +L+ +GY V E D+++ TCA+RENA+ +++ L
Sbjct: 19 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 78
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS K+ + + ++I V GC+A++ K +++ K +D V G + LP LL+ +
Sbjct: 79 LRSAKEKNPR-----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEH 133
Query: 175 NQTA-INVLLSLDETYADITP 194
N+ A + ++ SL E + + P
Sbjct: 134 NKRAEVEIVDSL-EQFPSVLP 153
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 157 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRRPGDILAEVQALVDQGVSEVTLLGQNV 216
Query: 67 NDTEVVWS 74
N V +S
Sbjct: 217 NAYGVNFS 224
>gi|333370927|ref|ZP_08462897.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
Length = 495
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E ++ I DE+R + K + +GCQMNV+D+E + IL+ GY
Sbjct: 25 RGKEDISVLEFDQIPDEMRGIGKGKKYLIKTYGCQMNVHDSETIAGILELMGYRPTEVEE 84
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EA VIL+ TCAIRENAE KV+ + +++K + L +G+ GCM+ E + +
Sbjct: 85 EAAVILINTCAIRENAEDKVFGEIGRLKTLKTEKPE-----LVLGMCGCMSQEESVVNRI 139
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRS 204
L+K Q +DL+ G + LP LL ++ + + S + + PK V DG ++
Sbjct: 140 LQKHQHVDLIFGTHNIHRLPHLLREALMSKEMVVEVWSKEGDIVENLPK-VREDGLKA 196
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ ED + A+V+IM GCD CTYCIVP+TRG+ERSR + +L E+R L+ K Y EV
Sbjct: 188 KVREDGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEIRDLARKGYREVTLLG 247
Query: 64 MNVN 67
NVN
Sbjct: 248 QNVN 251
>gi|161523785|ref|YP_001578797.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
multivorans ATCC 17616]
gi|189351454|ref|YP_001947082.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia
multivorans ATCC 17616]
gi|221200110|ref|ZP_03573153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD2M]
gi|221206737|ref|ZP_03579749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD2]
gi|421469879|ref|ZP_15918305.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
ATCC BAA-247]
gi|229890459|sp|A9AFF8.1|MIAB_BURM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160341214|gb|ABX14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
ATCC 17616]
gi|189335476|dbj|BAG44546.1| bifunctional enzyme [Burkholderia multivorans ATCC 17616]
gi|221173392|gb|EEE05827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD2]
gi|221180349|gb|EEE12753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CGD2M]
gi|400228887|gb|EJO58777.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
ATCC BAA-247]
Length = 457
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KVY + FGCQMN D++ + +L ++ G K + P +AD+IL TC++RE A+ KV+
Sbjct: 1 MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ L IGV GC+A + S++ + +DLV GP + LP+++
Sbjct: 61 SDLGRVRELKEAKPD-----LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S + +++ E + + P V
Sbjct: 116 DARRTSGRAQVDITFPEIEKFDHLPPARV 144
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C+YC+VP+TRG E SRP+ +L EV L+D+ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEVAGLADQGVREVTLLGQNVN 204
>gi|316931567|ref|YP_004106549.1| RNA modification protein, MiaB family [Rhodopseudomonas palustris
DX-1]
gi|315599281|gb|ADU41816.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris
DX-1]
Length = 463
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD--- 110
K++ + +GCQMNV D + + L G+ + + +AD++++ TC IRE A KV+
Sbjct: 6 KLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSELG 65
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RLR R H + ++I V GC+A+ + ++ + +D+V GP SY +LP+LLA
Sbjct: 66 RLRVARDEAASHGRR----MQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLA 121
Query: 171 LTYSNQTAINVLLSLDETYADI---TPKAVSTDG 201
+ A+ +D+ + + P A+ G
Sbjct: 122 RANRDGRALETEFPIDDKFGVLPQPAPDAIRARG 155
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+SAFV++ GCD CT+C+VP+TRG E SRP+ +I+ +V+ L+D EV NVN
Sbjct: 156 ISAFVTVQEGCDKFCTFCVVPYTRGAEMSRPVAAIIADVQRLADHGVREVTLIGQNVN 213
>gi|110636243|ref|YP_676451.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chelativorans
sp. BNC1]
gi|122965426|sp|Q11BD9.1|MIAB_MESSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110287227|gb|ABG65286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chelativorans sp. BNC1]
Length = 475
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
Query: 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
ERS S KV+ + +GCQMNV D++ + L + GY + +AD++L+
Sbjct: 8 ERSETSSSRAGTASRTDKKVFVKTYGCQMNVYDSQRMADALAAEGYRATDVIEDADLVLL 67
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TC IRE A KV+ L R +K+ K + +GV GC+A+ + +L + A+DL
Sbjct: 68 NTCHIREKAAEKVYSELGRIRVLKEERAKQGRETV-VGVAGCVAQAEGREILRRAPAVDL 126
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLDETY 189
V GP +Y LP ++ + + + ++++ +
Sbjct: 127 VIGPQTYHRLPSVVTRARAGEKIVETEYAVEDKF 160
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L++ E+ NVN
Sbjct: 175 GVTAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVAQIVAEAERLAEAGVRELTLLGQNVN 233
>gi|421474157|ref|ZP_15922216.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CF2]
gi|400232740|gb|EJO62336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans
CF2]
Length = 457
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ KVY + FGCQMN D++ + +L ++ G K + P +AD+IL TC++RE A+ KV+
Sbjct: 1 MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+ L IGV GC+A + S++ + +DLV GP + LP+++
Sbjct: 61 SDLGRVRELKEAKPD-----LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMI 115
Query: 170 -ALTYSNQTAINVLLSLDETYADITPKAV 197
A S + +++ E + + P V
Sbjct: 116 DARRTSGRAQVDITFPEIEKFDHLPPARV 144
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C+YC+VP+TRG E SRP+ +L EV L+D+ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEVAGLADQGVREVTLLGQNVN 204
>gi|251797360|ref|YP_003012091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
sp. JDR-2]
gi|247544986|gb|ACT02005.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. JDR-2]
Length = 525
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 43 SILDEVRALSDKVYF--EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
SI +E++ + ++ + +GCQMN +DTEV+ + + GY+ + +ADVIL+ TCAI
Sbjct: 70 SIPEELQTIGKGKFYLIQTYGCQMNEHDTEVMKGMFEEMGYTGTDDRLQADVILLNTCAI 129
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAG 158
RENAE KV+ L +++K + K L +GV GCM+ E + +L+K +D++ G
Sbjct: 130 RENAEDKVFGELGHLKTLK-LQKPE----LLLGVCGCMSQEESVVGKILQKHAFVDMIFG 184
Query: 159 PDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRS 204
+ LP LL Y ++ + + S + + PK DG R+
Sbjct: 185 THNIHRLPHLLQNAYFSKEMVVEVWSKEGDIIENMPK--KRDGMRA 228
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D + A+V+IM GCD CTYCIVP+TRG+ERSR + ++ EVR L+ + + E+ NVN
Sbjct: 224 DGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAEVRELARQGFKEITLLGQNVN 283
>gi|407768007|ref|ZP_11115386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407288720|gb|EKF14197.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 463
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 71/121 (58%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+++ K++ + +GCQMNV D++ + +L GY V+ AD++++ TC IRE A KV+
Sbjct: 2 SVTKKLFVKTYGCQMNVYDSQRMQDVLAPLGYQPVDDAAGADMVILNTCHIREKAAEKVF 61
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R K+ + + T + + V GC+A+ L+ +E +D+V GP +Y LP ++
Sbjct: 62 SDLGRIRKHKKAKEANGTDKMIVAVAGCVAQAEGAELMRREPMVDMVFGPQTYHRLPEMV 121
Query: 170 A 170
A
Sbjct: 122 A 122
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF++I GCD CT+C+VP+TRG E SRP I++E R L +K E+ NVN
Sbjct: 157 SAFLAIQEGCDKFCTFCVVPYTRGAEYSRPGMDIINEARQLVEKGTREITLLGQNVN 213
>gi|295099816|emb|CBK88905.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium cylindroides
T2-87]
Length = 477
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQ N D+E + IL S G+ K P + DVIL+ TCAIR+NAE KV +
Sbjct: 43 KYYISTYGCQANERDSETLAGILDSLGFEKSESPEDVDVILINTCAIRQNAEEKVLGEIG 102
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL-A 170
++ + + +K L IGV GCMA E L +LLEK + L+ G + LP +L +
Sbjct: 103 NFKRLYRANKD-----LVIGVCGCMAQEEGLVNTLLEKYPQVRLLFGTHNIHQLPEMLYS 157
Query: 171 LTYSNQTAINVLLSLDETYADI 192
+ + + + + E Y ++
Sbjct: 158 VMFEKKRVVKIYSKEGEVYENL 179
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+V+IM GCD CTYCIVP+TRG++RSR M IL EV+ L D+ Y E+ NVN
Sbjct: 189 AWVNIMYGCDKFCTYCIVPYTRGKQRSRTMDQILFEVKELYDQGYKEITLLGQNVN 244
>gi|95930428|ref|ZP_01313164.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
DSM 684]
gi|95133468|gb|EAT15131.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans
DSM 684]
Length = 444
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+S Y E FGCQMNV D+E + ++L Y V P++AD+IL+ TC++R+ AE KV+
Sbjct: 1 MSKSFYLETFGCQMNVVDSEWIVNLLGQIDYHPVETPQQADLILLNTCSVRDKAERKVYG 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L ++ +K L + V GC+A++ + LL+K LD+V G + LP L+
Sbjct: 61 HLSHFKPLKDQRPD-----LILAVGGCVAQQEGQQLLKKVPYLDIVFGTHNVHKLPELI 114
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R +E+++ FV++M+GCDN C+YC+VP+ RGRE SR ILDEVR+L D+ EV
Sbjct: 142 RADENAICRFVTVMQGCDNFCSYCVVPYVRGREVSRASGDILDEVRSLVDQGVREVTLLG 201
Query: 64 MNVN 67
NVN
Sbjct: 202 QNVN 205
>gi|170741367|ref|YP_001770022.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium sp. 4-46]
gi|229890618|sp|B0UNY0.1|MIAB_METS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|168195641|gb|ACA17588.1| RNA modification enzyme, MiaB family [Methylobacterium sp. 4-46]
Length = 447
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K + + +GCQMNV D + +L G+++ EADV+++ TC IRE A KV+ L
Sbjct: 3 KAFVKSYGCQMNVYDAARMVDLLGREGFAETEAMEEADVVILNTCHIREKAAEKVYSELG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K + I V GC+A+ + ++ + A+D+V GP SY LP LLA
Sbjct: 63 RVRDLKG-ERAGAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPELLARAR 121
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
+ ++ LD+ + + P+ V+
Sbjct: 122 DGKV-VDTEFPLDDKFDHLPPRRVA 145
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+++ GCD C +C+VP+TRG E SRP+ IL E L+ E+ NVN
Sbjct: 148 SAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVAKILAEAERLAAGGARELTLIGQNVN 204
>gi|418938183|ref|ZP_13491745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Rhizobium
sp. PDO1-076]
gi|375055184|gb|EHS51457.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Rhizobium
sp. PDO1-076]
Length = 464
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL- 112
KV+ + +GCQMNV D+ + L + GY +AD++L+ TC IRE A KV+ L
Sbjct: 20 KVFIKTYGCQMNVYDSGRMADALAADGYVSTEVMEDADLVLLNTCHIREKAAEKVYSALG 79
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
R + K + R F IGV GC+A+ + + +E A+D+V GP +Y LP+ L
Sbjct: 80 RLRETKKARAAEGREF--MIGVAGCVAQAEGEEISRREPAVDVVIGPQTYHRLPQALHRA 137
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDGR 202
+ + ++ +L++ + + P V G+
Sbjct: 138 RTGERVVDTEYALEDKFEHL-PAPVKVPGK 166
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 17/104 (16%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN- 67
+V+AF+++ GCD CT+C+VP+TRG E SRP+ +L E R L D E+ NVN
Sbjct: 169 NVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPLAQLLAEARKLVDTGVRELTLLGQNVNA 228
Query: 68 ----DTE--------VVWSILKSSGYSKV----NHPREADVILV 95
D E +++ + ++ G +++ +HPR+ D L+
Sbjct: 229 WHGEDEEGRAIGLGDLLYRLAETPGLARLRYTTSHPRDMDDRLI 272
>gi|329847364|ref|ZP_08262392.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
C19]
gi|328842427|gb|EGF91996.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum
C19]
Length = 448
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD--- 110
K++ + +GCQMNV D+E + IL+ GY + AD++L+ TC IRE A KV+
Sbjct: 3 KLHIKTYGCQMNVYDSERMIDILRPLGYEVSDVADGADLVLLNTCHIREKAAEKVYSEIG 62
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
RL+ R K+ + R + I V GC+A+ ++ + A+DLV GP +Y LP L+A
Sbjct: 63 RLKELRGEKEARGEGR---MTIAVAGCVAQAEGIEIMHRAPAVDLVIGPQAYHQLPELIA 119
Query: 171 LTY 173
T+
Sbjct: 120 RTH 122
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE 70
+AF+++ GCD CT+C+VP+TRG E SRP+ +ILDE +AL+ K E+ NVN
Sbjct: 152 TAFLTVQEGCDKFCTFCVVPYTRGAEWSRPVAAILDEAQALAAKGVRELTLLGQNVNAFN 211
Query: 71 VVWSILKSSGYSKV 84
V S + S +K+
Sbjct: 212 GVGSDGQPSTLAKL 225
>gi|311739645|ref|ZP_07713480.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305461|gb|EFQ81529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 520
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 46 DEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
D + ++D +EV FGCQMNV+D+E + +L+ +GY+ E D+I+ TCA+REN
Sbjct: 12 DVEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVREN 71
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
A+ +++ L + K+ H ++I V GC+A++ K ++L+ +D V G +
Sbjct: 72 ADKRLYGTLGALKKTKENHPG-----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMA 126
Query: 164 DLPRLLALTYSNQTA-INVLLSLDETYADITP 194
LP LL N A + ++ SL E + + P
Sbjct: 127 ALPTLLERARHNDEAQVEIVDSL-EAFPSVLP 157
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 161 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNV 220
Query: 67 NDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
N V ++ N PR+ + +RE + + +RLRF
Sbjct: 221 NAYGV--------NFADPNMPRDR---FAFSKLLREVGKIEGLERLRF 257
>gi|425735455|ref|ZP_18853769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevibacterium casei S18]
gi|425479861|gb|EKU47033.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevibacterium casei S18]
Length = 498
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 58 EVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRS 117
+ +GCQMNV+D+E + +L +GY + +ADV++ TCA+RENA+ +++ L
Sbjct: 21 KTYGCQMNVHDSERLSGLLDDAGYVPADVESQADVVVFNTCAVRENADNRLYGNLGRLAK 80
Query: 118 MKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQT 177
+K+ H L+I V GCMA++ + +++ K +D+V G + LP LL N+
Sbjct: 81 VKEQHPG-----LQIAVGGCMAQKDRDTIVRKAPWVDVVFGTHNMGSLPALLERARHNEE 135
Query: 178 A-INVLLSLD 186
A + +L SLD
Sbjct: 136 AQVEILESLD 145
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 34/61 (55%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E S +VSI GC+N CT+CIVP RG+E+ R IL EV AL EV NV
Sbjct: 156 ESQHSGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVEALVADGVVEVTLLGQNV 215
Query: 67 N 67
N
Sbjct: 216 N 216
>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
Length = 541
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 13/157 (8%)
Query: 33 RGRERS---RPMQSILDEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHP 87
RG+E RP I + ++ + + F + +GCQMN +D+E + +L G+++ +
Sbjct: 73 RGKEDVQVLRPDDLIPEPMQGIGNGKTFHIRTYGCQMNTHDSENMAGLLTEMGFTETDDT 132
Query: 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKS 145
++ADVIL+ TCAIRENAE KV+ + +S+ KK R + +GV GCM+ E +
Sbjct: 133 KDADVILLNTCAIRENAENKVFGEIGHLKSL----KKERP-EVILGVCGCMSQEENVVNR 187
Query: 146 LLEKEQALDLVAGPDSYKDLPRLLA-LTYSNQTAINV 181
+++K Q +D++ G + LP LL Y + I V
Sbjct: 188 IMQKHQHIDIIFGTHNIHRLPSLLQNAIYGKEMVIEV 224
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R E A+V+IM GCD CTYCIVP+TRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 237 RKREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDIIDEVRDLARQGYKEITLLG 296
Query: 64 MNVN 67
NVN
Sbjct: 297 QNVN 300
>gi|444335493|ref|YP_007391862.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
gi|444299872|gb|AGD98109.1| MiaB family tRNA modification enzyme: 2-methylthioadenine
synthetase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
Length = 467
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y E +GC MN +DTE++ SIL +G+ N+ ++A +IL+ TCAIR+ AE + RL
Sbjct: 16 YIESYGCHMNTSDTEIIISILSKNGFLLTNNLKKAHIILLNTCAIRKKAELSIEKRLDNL 75
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R +K ++K PL G+LGC+++ K S L +D GP+SY+ +P ++ L N
Sbjct: 76 RYLKSNNQK---IPL-FGILGCLSKSEKYSNL-----IDFSIGPNSYRKIPDIIRLVMMN 126
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65
N+ ++ F+SI RGCDNMCT+CIVPFTRGRERS SI+ E L +K Y EV N
Sbjct: 153 NKKKITTFLSITRGCDNMCTFCIVPFTRGRERSSSPYSIIKECENLYEKGYKEVTLLGQN 212
Query: 66 VN 67
V+
Sbjct: 213 VD 214
>gi|378824637|ref|YP_005187369.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Sinorhizobium fredii HH103]
gi|365177689|emb|CCE94544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Sinorhizobium fredii HH103]
Length = 466
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P + + + KV+ + +GCQMNV D++ + L GY + +AD +L+ TC
Sbjct: 9 PKSPVAGDEHVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCH 68
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE A KV+ L R +K+ K + IGV GC+A+ +L + A+DLV GP
Sbjct: 69 IREKAAEKVYSELGRLRELKKA-KASEGREMVIGVAGCVAQAEGNEILRRAPAVDLVIGP 127
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADI-TPKAVSTDGR 202
+Y LP L S + + ++++ + + P T R
Sbjct: 128 QTYHRLPEALKRARSGERVVETDYAIEDKFEHLPAPDKAKTRSR 171
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
V+AF+++ GCD CT+C+VP+TRG E SRP+ I+ E L + E+ NVN
Sbjct: 172 GVTAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVAQIVTEAEKLVEGGVREITLLGQNVN 230
>gi|379795659|ref|YP_005325657.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356872649|emb|CCE58988.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 514
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL++ GY + ADVIL+ TCAIRENAE KV+ + +
Sbjct: 72 IKTYGCQMNAHDTEVIAGILEALGYQATSDINVADVILINTCAIRENAENKVFSEIGNLK 131
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
+ KK R L IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 132 HL----KKERPDIL-IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYL 186
Query: 175 NQTAI 179
++ +
Sbjct: 187 SKAMV 191
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 207 KVRQGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLG 266
Query: 64 MNVN 67
NVN
Sbjct: 267 QNVN 270
>gi|255325173|ref|ZP_05366279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
tuberculostearicum SK141]
gi|255297738|gb|EET77049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium
tuberculostearicum SK141]
Length = 520
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 46 DEVRALSDKVYFEV--FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
D + ++D +EV FGCQMNV+D+E + +L+ +GY+ E D+I+ TCA+REN
Sbjct: 12 DVEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVREN 71
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
A+ +++ L + K+ H ++I V GC+A++ K ++L+ +D V G +
Sbjct: 72 ADKRLYGTLGALKKTKENHPG-----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMA 126
Query: 164 DLPRLLALTYSNQTA-INVLLSLDETYADITP 194
LP LL N A + ++ SL E + + P
Sbjct: 127 ALPTLLERARHNDEAQVEIVDSL-EAFPSVLP 157
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E + + +VS+ GC+N CT+CIVP RG+E R IL EV+AL D+ EV NV
Sbjct: 161 ESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNV 220
Query: 67 NDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
N V ++ + PR+ + +RE + + +RLRF
Sbjct: 221 NAYGV--------NFADPDMPRDR---FAFSKLLREVGKIEGLERLRF 257
>gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
brevis NBRC 100599]
gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC
100599]
Length = 503
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+ +GCQMN +D+E + IL++ GY+ + +ADVIL TCAIRENAE KV+ L
Sbjct: 65 HVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGELGHM 124
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLL-ALT 172
+ +K + L +GV GCM+ E++ K +L+ Q +DL+ G + LP LL
Sbjct: 125 KRLKNNNPN-----LILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRDAM 179
Query: 173 YSNQTAINV 181
+S + I V
Sbjct: 180 FSKEMVIEV 188
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
+L E + +V+IM GCD CTYCIVP+TRG+ERSR + ++ EVR L+ + + E+
Sbjct: 201 KLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAEVRDLARQGFKEIMLLG 260
Query: 64 MNVN 67
NVN
Sbjct: 261 QNVN 264
>gi|169350629|ref|ZP_02867567.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
gi|169292683|gb|EDS74816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium spiroforme
DSM 1552]
Length = 481
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)
Query: 46 DEVRA-LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104
D ++A + K Y + +GCQ N D+E + IL+S Y + +EAD+I++ TCAIRENA
Sbjct: 36 DMIKAGVGKKYYIQTYGCQANERDSETLSGILESMSYRATDEIKEADIIILNTCAIRENA 95
Query: 105 EGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDS 161
E KV+ ++ + +++K +T P L + GCMA E + +LEK +DL+ G +
Sbjct: 96 EEKVFGKVGYVKNLK------KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLIFGTHN 149
Query: 162 YKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYVDGRWSI-------- 213
LP LL + ++ I + S + + P V D + +V+ +
Sbjct: 150 IHRLPELLKEAFYSKEMIIEVWSKEGDVIENAP--VKRDSKHKAWVNIMYGCNKFCTYCI 207
Query: 214 --YVDGRWRRKLGQQMVDGRSMSMDDG 238
Y G+ R +L + +V + DG
Sbjct: 208 VPYTRGKERSRLAKDIVKEVESLVADG 234
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
A+V+IM GC+ CTYCIVP+TRG+ERSR + I+ EV +L Y E+ NVN
Sbjct: 191 AWVNIMYGCNKFCTYCIVPYTRGKERSRLAKDIVKEVESLVADGYQEITLLGQNVN 246
>gi|71909139|ref|YP_286726.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dechloromonas
aromatica RCB]
gi|123774245|sp|Q47A75.1|MIAB_DECAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|71848760|gb|AAZ48256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dechloromonas aromatica
RCB]
Length = 445
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ K++ FGCQMN D++ + +L +S G K ++P EAD+IL TC++RE A+ KV+
Sbjct: 1 MPKKLFIRTFGCQMNEYDSDKMADVLNASEGVIKTDNPEEADIILFNTCSVREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
L R +K+++ L IGV GC+A + +++ + +D+V GP + LP+L+
Sbjct: 61 HDLGRVRHLKKLNPN-----LVIGVGGCVASQEGDAIIARAPYVDVVFGPQTLHRLPQLI 115
Query: 170 ALTYS-NQTAINVLLSLDETYADITPKAV 197
A + + A++V E + + P +
Sbjct: 116 AERKAKGKAAVDVSFPEIEKFDAMPPSEI 144
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIM GC CT+CIVP+TRG E SRP +L EV L+ EV NVN
Sbjct: 148 SAFVSIMEGCSKFCTFCIVPYTRGGEVSRPFNDVLTEVADLAAHGVGEVTLLGQNVN 204
>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123775346|sp|Q49X85.1|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 513
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116
+ +GCQMN +DTEV+ IL + GY+ ADVIL+ TCAIRENAE KV+ + +
Sbjct: 71 IKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEIGNLK 130
Query: 117 SMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+K+ +K T IGV GCM+ E + +L+ Q +D++ G + LP +L Y
Sbjct: 131 HLKK--EKPETV---IGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAY 184
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E ++ A+V+IM GCD CTYCIVPFTRG+ERSR + I+DEVR L+ + Y E+
Sbjct: 206 KVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRDLARQGYKEITLLG 265
Query: 64 MNVN 67
NVN
Sbjct: 266 QNVN 269
>gi|339499755|ref|YP_004697790.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Spirochaeta caldaria DSM 7334]
gi|338834104|gb|AEJ19282.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Spirochaeta caldaria DSM 7334]
Length = 442
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
+FE +GCQMN+ ++ + ILK G+ + + AD+IL+ TC++R AE +V RL Y
Sbjct: 4 FFETYGCQMNIAESAALQMILKERGWKEASSAETADLILLNTCSVRATAEKRVMGRLAQY 63
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
++ K R P + V GCMAERL + L EK A+D V G S P +L
Sbjct: 64 QADK------RKRPFTLIVAGCMAERLGEKLKEKIPAVDYVMGTQSRSVFPLIL 111
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L E +F+ IM GC+N C+YCIVP+ RGRE SR QSI+DE+ L+D+ E+
Sbjct: 136 LEEGQFRSFIPIMHGCNNFCSYCIVPYVRGREISRDPQSIVDEINLLADRGVREITLLGQ 195
Query: 65 NVN 67
NVN
Sbjct: 196 NVN 198
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,351,062,682
Number of Sequences: 23463169
Number of extensions: 170633228
Number of successful extensions: 398625
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7798
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 376770
Number of HSP's gapped (non-prelim): 16377
length of query: 285
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 144
effective length of database: 9,050,888,538
effective search space: 1303327949472
effective search space used: 1303327949472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)