BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3863
         (285 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|B Chain B, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|C Chain C, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|D Chain D, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|E Chain E, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|F Chain F, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|G Chain G, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
 pdb|2QGQ|H Chain H, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
          Northeast Structural Genomics Consortium Target Vr77
          Length = 304

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 7  EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
          E+   A+V I  GCD  CT+C +P  +G  RSR ++ I  EV  L
Sbjct: 1  EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDL 45


>pdb|1EJ6|B Chain B, Reovirus Core
 pdb|1EJ6|C Chain C, Reovirus Core
 pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1275

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 62  CQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
            +MN+N TE+ W++ + + GY  V  P    V  +M   I  NAE ++   +R 
Sbjct: 470 ARMNINPTEIEWALTECAQGYVTVTSPYAPSVNRLMPYRI-SNAERQISQIIRI 522


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,760
Number of Sequences: 62578
Number of extensions: 272455
Number of successful extensions: 666
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 2
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)