BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3863
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens
GN=CDK5RAP1 PE=1 SV=2
Length = 601
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASA 247
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 5/68 (7%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYF--- 57
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPPR 298
Query: 58 --EVFGCQ 63
+V G Q
Sbjct: 299 PPKVLGLQ 306
>sp|Q8BTW8|CK5P1_MOUSE CDK5 regulatory subunit-associated protein 1 OS=Mus musculus
GN=Cdk5rap1 PE=2 SV=2
Length = 588
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 92 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 151
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 152 QTIWNRLHQLKVLKTKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 210
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 211 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 243
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 238 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 297
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV ++ S+ S+
Sbjct: 298 LLGQNVNSFRDNSEVQFNNAGSANLSR 324
>sp|Q9JLH6|CK5P1_RAT CDK5 regulatory subunit-associated protein 1 OS=Rattus norvegicus
GN=Cdk5rap1 PE=1 SV=1
Length = 586
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 90 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 149
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 150 QTIWNRLHQLKVLKAKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 208
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 209 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 241
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 236 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 295
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV +S S+ S+
Sbjct: 296 LLGQNVNSFRDNSEVQFSSTGSANLSR 322
>sp|Q9VGZ1|CK5P1_DROME CDK5RAP1-like protein OS=Drosophila melanogaster GN=CG6345 PE=2
SV=1
Length = 583
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 116/143 (81%), Gaps = 4/143 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK +GY + P EADVI+++TCA+R+ AE ++ +RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITP 194
Y N +AINVLLSLDETYAD+ P
Sbjct: 212 HYGN-SAINVLLSLDETYADVMP 233
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN 67
NVN
Sbjct: 292 LLGQNVN 298
>sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein OS=Oryza sativa subsp. japonica
GN=Os11g0592800 PE=2 SV=1
Length = 600
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 8/161 (4%)
Query: 48 VRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK-VNHPREADVILVMTCAIRENAEG 106
V A ++Y E +GCQMNVND E+V SI+K+ GY + V P A++I + TCAIR+NAE
Sbjct: 88 VTASKGRIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQ 147
Query: 107 KVWDRLRFYRSMKQIHK------KHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
KVW RL ++ +K+ K + R+ P KI VLGCMAERLK+ +L+ ++ +D+V GP
Sbjct: 148 KVWQRLNYFWFLKRQWKANVAAGRSRSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
D+Y+DLPRLL Q IN LLSL+ETYADITP +S +
Sbjct: 208 DAYRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDN 248
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++++SV+AFVSIMRGC+NMC++CIVPFTRGRERSRP+ SI+ EV L EV
Sbjct: 243 VRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVMLL 302
Query: 63 QMNVN 67
NVN
Sbjct: 303 GQNVN 307
>sp|Q8H0V1|CK5P1_ARATH CDK5RAP1-like protein OS=Arabidopsis thaliana GN=At4g36390 PE=2
SV=1
Length = 640
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCAI 100
+S LD A ++Y E +GCQMN+ND E+V +I+K+SGY +V P A+VI V TCAI
Sbjct: 118 ESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAI 177
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQAL 153
RENAE +VW RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++ +
Sbjct: 178 RENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMV 237
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTD 200
D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI+P +S +
Sbjct: 238 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN 284
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++E+S++AFVS+MRGC+NMC +CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 279 VRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLL 338
Query: 63 QMNVN 67
NVN
Sbjct: 339 GQNVN 343
>sp|Q54KV4|CK5P1_DICDI CDK5RAP1-like protein OS=Dictyostelium discoideum GN=cdk5rap1 PE=3
SV=1
Length = 607
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P S L + KV+ E +GCQMNV+D EV+ SI+KSSGY+ N AD++ + TC+
Sbjct: 94 PYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCS 153
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRENAE K+W RL ++ I +K L +GVLGCMAERLK+ LLE + +D+V GP
Sbjct: 154 IRENAEAKIWLRL---TELRAIRRKQGRPNLIVGVLGCMAERLKEKLLESDMKVDIVVGP 210
Query: 160 DSYKDLPRLLALTY--SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
D+Y+ LP LLA QTAINV+LS DETYADI P +D + S YV
Sbjct: 211 DAYRSLPSLLATLEDGEQQTAINVILSADETYADIKP-VRKSDNQVSAYV 259
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR +++ VSA+VSIMRGC+NMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ + E+
Sbjct: 248 VRKSDNQVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLL 307
Query: 63 QMNVN 67
NVN
Sbjct: 308 GQNVN 312
>sp|B3QVA0|MIAB_CHLT3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
GN=miaB PE=3 SV=1
Length = 451
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 102/141 (72%), Gaps = 5/141 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+VY E +GCQMN +DTE++ SIL +GY+ + AD+I + TCA+RENAE ++ +RL+
Sbjct: 19 RVYLETYGCQMNFSDTEIISSILSDAGYAIAESEQVADIIFLNTCAVRENAEQRIRNRLQ 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R +K+ + K L +GVLGCMAERL++ L ++E+ +DL+AGPD+Y+ LP LL L
Sbjct: 79 NLRPLKKQNPK-----LIVGVLGCMAERLREKLFQEEKIVDLIAGPDAYRTLPNLLDLAE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
S + A NV+LSL+ETYADI P
Sbjct: 134 SGEKAANVMLSLEETYADINP 154
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L ++ SAF++IMRGCDNMC +CIVP+TRGRERSRPM SILDE++ LSD+ EV
Sbjct: 155 LRKNGHSAFLAIMRGCDNMCAFCIVPYTRGRERSRPMTSILDELKQLSDEGTREVTLLGQ 214
Query: 65 NVN 67
NVN
Sbjct: 215 NVN 217
>sp|Q11U26|MIAB_CYTH3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469) GN=miaB PE=3 SV=1
Length = 481
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMN +D+E+V SIL G+ + P ADVIL+ TC+IR+NAE KV RL
Sbjct: 39 KLYIESYGCQMNFSDSEIVMSILTEEGFDTTSTPNNADVILLNTCSIRDNAEQKVRHRLV 98
Query: 114 FYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ +K R P + +GVLGCMAERLK LLE+E+ +D+V GPD+Y+DLP L+
Sbjct: 99 HFKGLK------RNKPSMIVGVLGCMAERLKAQLLEEEKIVDMVVGPDAYRDLPNLINEV 152
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDG 201
S A+NV LS +ETYADI P +S DG
Sbjct: 153 DSGHKAVNVFLSREETYADINPLRLSGDG 181
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RL+ D VSAFVSIMRGCDNMC++C+VP+TRGRERSR SIL+EVR L Y EV
Sbjct: 175 LRLSGDGVSAFVSIMRGCDNMCSFCVVPYTRGRERSRDAHSILNEVRELVANGYKEVTLL 234
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 235 GQNVDSYK--WS 244
>sp|B3ES11|MIAB_AMOA5 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Amoebophilus asiaticus (strain 5a2) GN=miaB PE=3 SV=1
Length = 486
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
Query: 50 ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ +Y E +GCQMN+ D+EVV SIL+ G+ + +ADVI + TCAIR+ AE V
Sbjct: 32 TITRNLYVESYGCQMNIADSEVVVSILRPHGFEITDTYEKADVIFINTCAIRDKAEQTVR 91
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
RL + +K+ R L IGVLGCMAERLK++LLE+E+ +DLVAGPD+Y+DLPRLL
Sbjct: 92 KRLSQFNQLKR-----RNPDLVIGVLGCMAERLKQTLLEEEKLVDLVAGPDAYRDLPRLL 146
Query: 170 ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
A S AIN LS +ETYADI+P ++++G
Sbjct: 147 ATVDSGHKAINTFLSREETYADISPIRLNSNG 178
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+RLN + VSAF+SIMRGCDNMC++C+VPFTRGRERSR SI+ E L ++ Y EV
Sbjct: 172 IRLNSNGVSAFISIMRGCDNMCSFCVVPFTRGRERSRDPYSIVKEATELFEQGYREVTLL 231
Query: 63 QMNVNDTEVVWS 74
NV+ + WS
Sbjct: 232 GQNVDSYK--WS 241
>sp|A6H119|MIAB_FLAPJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511) GN=miaB PE=3 SV=1
Length = 481
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 44 ILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIREN 103
IL+ + K++ E +GC MN +D+E+V SIL +GY+ N EAD++LV TC+IR+
Sbjct: 15 ILENKPENTKKLFIESYGCAMNFSDSEIVASILSGNGYNTTNVLEEADLVLVNTCSIRDK 74
Query: 104 AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
AE + RL Y ++K+I+ K +K+GVLGCMAERLK LE+E+ +DLV GPD+YK
Sbjct: 75 AEQTIRKRLEKYNAVKRINPK-----MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYK 129
Query: 164 DLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
DLP LL + AINV+LS DETY DI+P + ++G
Sbjct: 130 DLPNLLNEVEEGRDAINVILSKDETYGDISPVRLMSNG 167
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A V+I RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L K + E+
Sbjct: 161 VRLMSNGITALVAITRGCDNMCTFCVVPFTRGRERSREPQSIMAEIQDLWHKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>sp|B2RKG6|MIAB_PORG3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM
20709 / JCM 12257) GN=miaB PE=3 SV=1
Length = 465
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 101/141 (71%), Gaps = 3/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ GYS ++ EAD ILV TC++R+NAE KV +RL
Sbjct: 19 KLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRLA 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Y S+++ K+ + L IGVLGCMAER+K+ L+ +E +D+VAGPDSY DLP L+
Sbjct: 79 YYHSLRK--KRRASSRLVIGVLGCMAERVKEELI-REHHVDVVAGPDSYLDLPNLVGAAE 135
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS+ ETY D+ P
Sbjct: 136 QGEKAINVELSMQETYKDVMP 156
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +++ ++ FVSIMRGC+N C+YCIVP+TRGRERSR ++SIL+EVR L K + EV
Sbjct: 155 MPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVT 214
Query: 61 GCQMNVN 67
NVN
Sbjct: 215 LLGQNVN 221
>sp|A5FIU2|MIAB_FLAJ1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=miaB PE=3 SV=1
Length = 481
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 36 ERSRPMQSILDEVRAL-SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
E S+ +S++ E + + K++ E +GC MN +D+EVV SIL GY+ + EAD++L
Sbjct: 6 EESKQGESLVLENKPENTKKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVL 65
Query: 95 VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
V TC+IR+ AE + RL Y ++K+ + K +K+GVLGCMAERLK LE+E+ +D
Sbjct: 66 VNTCSIRDKAEQTIRKRLEKYNAVKRTNPK-----MKVGVLGCMAERLKSQFLEEEKIVD 120
Query: 155 LVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LV GPD+YKDLP LLA + AINV+LS +ETY DI+P + ++G
Sbjct: 121 LVVGPDAYKDLPNLLAEVEEGRDAINVILSKEETYGDISPVRLMSNG 167
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + ++A VSI RGCDNMCT+C+VPFTRGRERSR QSI+ E++ L K + E+
Sbjct: 161 VRLMSNGITALVSITRGCDNMCTFCVVPFTRGRERSREPQSIMAEIQDLWSKGFKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>sp|Q2RZF8|MIAB_SALRD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salinibacter ruber (strain DSM 13855 / M31) GN=miaB
PE=3 SV=2
Length = 503
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 11/176 (6%)
Query: 33 RGRERSRPMQSILDEVR------ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH 86
R RE + LD V+ A +VY E +GCQMNVND+ +V S+L+ SGY
Sbjct: 16 RQREADGEVDEDLDRVKHGYDATAGDKQVYIETYGCQMNVNDSGIVASVLEESGYGLTRD 75
Query: 87 PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSL 146
ADV+L+ TCAIRENAE K+ RL RS K+ R L +GVLGCMAERL++ L
Sbjct: 76 QAAADVVLLNTCAIRENAERKIRARLSMLRS----EKEKRDGELMLGVLGCMAERLREKL 131
Query: 147 LEKEQALDLVAGPDSYKDLPRLL-ALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
LE+E +D+V GPD+Y+DLP+LL + Q A+NV LS ETY DI P ++G
Sbjct: 132 LEQEDLVDVVVGPDAYRDLPQLLYEADATGQAAVNVELSKQETYEDIQPVRYDSNG 187
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR + + VSA+VSIMRGCDNMCT+C+VPFTRGRE SRP+ +IL EV L+++ Y EV
Sbjct: 181 VRYDSNGVSAYVSIMRGCDNMCTFCVVPFTRGREESRPVTTILSEVARLAEEGYKEVTLL 240
Query: 63 QMNVN 67
NVN
Sbjct: 241 GQNVN 245
>sp|A0M7D3|MIAB_GRAFK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Gramella forsetii (strain KT0803) GN=miaB PE=3 SV=1
Length = 481
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GC MN +D+E+V SIL G++ + EAD++LV TC+IRE AE V RL
Sbjct: 25 KLFIESYGCAMNFSDSEIVASILSKEGFNTTQNLEEADLVLVNTCSIREKAEQTVRKRLE 84
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
Y ++K+I+ +K+GVLGCMAERLK LE+E+ +DLV GPD+YKDLP L+
Sbjct: 85 KYNAVKRINPG-----MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ AINV+LS +ETY DI+P + ++G
Sbjct: 140 EGRDAINVILSKEETYGDISPVRLQSNG 167
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VRL + VSAFVSI RGCDNMCT+C+VPFTRGRERSR QSI++EV L+ K Y E+
Sbjct: 161 VRLQSNGVSAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIVEEVNDLAAKGYKEITLL 220
Query: 63 QMNVN 67
NV+
Sbjct: 221 GQNVD 225
>sp|Q7MAW4|MIAB_PORGI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
GN=miaB PE=3 SV=1
Length = 463
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 3/141 (2%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y E +GCQMNV D+EVV S+++ GY+ ++ EAD ILV TC++R+NAE KV +RL
Sbjct: 19 KLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRLA 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+Y S+++ K+ + L IGVLGCMAER+K+ L+ +E +D+VAGPDSY DLP L+
Sbjct: 79 YYHSLRK--KRRASSRLVIGVLGCMAERVKEELI-REHHVDVVAGPDSYLDLPNLVGAAE 135
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 136 QGEKAINVELSTQETYKDVMP 156
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M +++ ++ FVSIMRGC+N C+YCIVP+TRGRERSR ++SIL+EVR L K + EV
Sbjct: 155 MPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVT 214
Query: 61 GCQMNVN 67
NVN
Sbjct: 215 LLGQNVN 221
>sp|Q09316|CK5P1_CAEEL CDK5RAP1-like protein OS=Caenorhabditis elegans GN=F25B5.5 PE=3
SV=1
Length = 547
Score = 144 bits (362), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 6/140 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + + AD++L+MTC+IR+ AE KVW++L+
Sbjct: 81 VCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKL 140
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS ++K +GVLGCMAER++ LLEK +++VAGPDSY+DLPRL+A+
Sbjct: 141 IRS-NSVNKGQ-----IVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAG 194
Query: 175 NQTAINVLLSLDETYADITP 194
INV LSLDETYAD+ P
Sbjct: 195 GSNGINVQLSLDETYADVQP 214
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 19/163 (11%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP++SI++EV+ L D+ Y +V
Sbjct: 215 IRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTLL 274
Query: 63 QMNVND----TEVVWSILKSS-------GYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
NVN T + +S+ S+ G+ V P+ L T + + A+ R
Sbjct: 275 GQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGG--LTFTTLLEKVADAAPDIR 332
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALD 154
RF H K FP+++ L L K L Q+ D
Sbjct: 333 FRFTSP----HPKD--FPMQLIELIASRPNLCKQLHLPAQSGD 369
>sp|A6LEM6|MIAB_PARD8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=miaB PE=3 SV=1
Length = 457
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EVV SI+K GYS + EAD I V TC++R+NAE K++ RL+
Sbjct: 20 KLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRLQ 79
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K L +GVLGCMAER+K+ L+ A DLV GPDSY DLP L+
Sbjct: 80 YFQSLKRKKKS-----LIVGVLGCMAERVKEDLIHVHHA-DLVVGPDSYLDLPNLVGAVE 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ AINV LS ETY D+ P
Sbjct: 134 HGEKAINVELSTQETYKDVIP 154
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+E+R + +K + EV NVN
Sbjct: 162 ISGFVSIMRGCNNFCTYCIVPYTRGRERSRDIESILNEIRDMHEKGFKEVTLLGQNVN 219
>sp|Q650P7|MIAB_BACFR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacteroides fragilis (strain YCH46) GN=miaB PE=3 SV=1
Length = 457
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>sp|Q5LJ70|MIAB_BACFN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
GN=miaB PE=3 SV=1
Length = 457
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ KKH L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKK-KKKH----LIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + A+NV LS ETY D+ P +
Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y E+
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVSKGYKEITLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>sp|Q8A2W0|MIAB_BACTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
2079 / NCTC 10582 / E50 / VPI-5482) GN=miaB PE=3 SV=1
Length = 455
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ S+++ +GYS EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ S+K+ K L +GVLGCMAER+K L+ +DLV GPD+Y LP L+A
Sbjct: 79 FFHSLKKKKK-----ALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY D+ P +
Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRI 156
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N CTYCIVP+TRGRERSR ++SIL+EV L K Y EV
Sbjct: 155 RICGNHISGFVSIMRGCNNFCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLG 214
Query: 64 MNVN 67
NVN
Sbjct: 215 QNVN 218
>sp|A6KZJ2|MIAB_BACV8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=miaB PE=3 SV=1
Length = 456
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ E +GCQMNV D+EV+ SI++ +GY EAD + + TC+IR+NAE K+ +RL
Sbjct: 19 KLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRLE 78
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F+ SMK+ +++ L +GVLGCMAER+K L+E +DLV GPD+Y LP L+A
Sbjct: 79 FFHSMKKNKRRN----LIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133
Query: 174 SNQTAINVLLSLDETYADITPKAV 197
+ + AINV LS ETY ++ P +
Sbjct: 134 AGEKAINVELSTTETYREVIPSRI 157
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
R+ + +S FVSIMRGC+N C YCIVP+TRGRERSR ++SIL+EVR L+DK Y EV
Sbjct: 156 RICGNHISGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILNEVRDLADKGYKEVTLLG 215
Query: 64 MNVN 67
NVN
Sbjct: 216 QNVN 219
>sp|B6YRD1|MIAB_AZOPC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Azobacteroides pseudotrichonymphae genomovar. CFP2
GN=miaB PE=3 SV=1
Length = 449
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 101/145 (69%), Gaps = 6/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+++ E +GCQMN+ D+E+V +I++ G+ + EADV+L+ TC++RENAE K++ RL+
Sbjct: 14 RIFIETYGCQMNIADSEIVIAIVQMDGFEYTENILEADVVLINTCSVRENAEKKIFSRLQ 73
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++S+K+ K+++ L IGVLGCMA+R++++L+++ +DLV GPDSY DLP L+
Sbjct: 74 YFQSLKK--KRNQ---LIIGVLGCMAKRIRETLIQQYH-VDLVVGPDSYMDLPHLIGTVE 127
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
AIN+ LS E Y I P +S
Sbjct: 128 KGAKAININLSSTEVYKGIVPLKLS 152
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
++L+ +S F+SI+RGC+N C+YCIVP+TRGRERSR +SIL+E+ L ++ Y EV
Sbjct: 149 LKLSRIKISGFISIIRGCNNFCSYCIVPYTRGRERSRDPKSILNELHILKEQGYKEVILL 208
Query: 63 QMNVN 67
NVN
Sbjct: 209 GQNVN 213
>sp|Q053R5|MIAB_LEPBL (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=miaB PE=3 SV=1
Length = 449
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++R
Sbjct: 10 TGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNR 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 70 LQSLGYLKK-----RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQR 124
Query: 172 TYSNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ V+
Sbjct: 125 IRSGEHSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>sp|Q04UA3|MIAB_LEPBJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=miaB PE=3 SV=1
Length = 449
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
+ KVY E +GCQMN D+ +V S++K + YS P +D+I + TCAIRENA K+++R
Sbjct: 10 TGKVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNR 69
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y+ LP L+
Sbjct: 70 LQSLGYLKK-----RNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQR 124
Query: 172 TYSNQTAINVL-LSLDETYADITPKAVS 198
S + +I++ LS ETY +I P+ V+
Sbjct: 125 IRSGEHSISLTRLSKIETYDEIEPRVVN 152
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L++K +V NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLTEKGIRQVTLLGQNVN 211
>sp|Q8F743|MIAB_LEPIN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar Lai (strain 56601) GN=miaB PE=3 SV=1
Length = 449
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S+++ + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRKGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 211
>sp|Q72PA4|MIAB_LEPIC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar copenhageni (strain Fiocruz L1-130) GN=miaB PE=3
SV=1
Length = 449
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 43 SILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102
S+L++ + S KVY E +GCQMN D+ +V S+++ + YS + P +D+I + TCAIRE
Sbjct: 2 SVLEQEKK-SGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRE 60
Query: 103 NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162
NA K+++RL+ +K+ R L IGVLGCMA+ L L +E LDLV GPD+Y
Sbjct: 61 NAHAKIYNRLQSLGYLKK-----RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNY 115
Query: 163 KDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ LP L+ + +I++ LS ETY +I P+ V+
Sbjct: 116 RSLPELIQRIRKGENSISLTRLSKIETYDEIEPRVVN 152
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ EV+ L K ++ NVN
Sbjct: 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREVQDLVQKGIRQITLLGQNVN 211
>sp|B0SS31|MIAB_LEPBP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira biflexa serovar Patoc (strain Patoc 1 /
ATCC 23582 / Paris) GN=miaB PE=3 SV=1
Length = 458
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 41 MQSILDEVRALSD-----KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
M L E + L+ KVY E +GCQMN D+ +V + + Y N E+D+I +
Sbjct: 1 MNPTLTESQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFL 60
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TCA+RENA K++ RL +S+ + KK+ L IGVLGCMA+ L + L +E LDL
Sbjct: 61 NTCAVRENAHAKIYGRL---QSLGYLKKKNPN--LVIGVLGCMAQNLGEDLFHQELPLDL 115
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ GPD+Y+ LP L+ + + + + LS ETY ++ PK V+
Sbjct: 116 IVGPDNYRTLPELIQNIRNGEKDVQLTRLSRSETYDELEPKVVN 159
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L + +V NVN
Sbjct: 159 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVN 218
Query: 68 D--------TEVVWSILKSSGYSKVN----HPREADVILVMTCAIRENAEGKVWDRLRFY 115
+V SILK + +V HP++ L+ A +
Sbjct: 219 SYSYESYDFCALVESILKETTIERVRFTSPHPKDFPDHLISLMAKED------------- 265
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV 156
R QIH PL+ G + + +K+S KE+ LDLV
Sbjct: 266 RFSSQIH-----MPLQAGSSKVLRD-MKRSYT-KEEYLDLV 299
>sp|B0S9E2|MIAB_LEPBA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptospira biflexa serovar Patoc (strain Patoc 1 /
Ames) GN=miaB PE=3 SV=1
Length = 458
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 41 MQSILDEVRALSD-----KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILV 95
M L E + L+ KVY E +GCQMN D+ +V + + Y N E+D+I +
Sbjct: 1 MNPTLTESQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFL 60
Query: 96 MTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
TCA+RENA K++ RL +S+ + KK+ L IGVLGCMA+ L + L +E LDL
Sbjct: 61 NTCAVRENAHAKIYGRL---QSLGYLKKKNPN--LVIGVLGCMAQNLGEDLFHQELPLDL 115
Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVL-LSLDETYADITPKAVS 198
+ GPD+Y+ LP L+ + + + + LS ETY ++ PK V+
Sbjct: 116 IVGPDNYRTLPELIQNIRNGEKDVQLTRLSRSETYDELEPKVVN 159
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ + AFV+IMRGC+N CT+C+VP+TRGRERSR +SI+ E++ L + +V NVN
Sbjct: 159 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVN 218
Query: 68 D--------TEVVWSILKSSGYSKVN----HPREADVILVMTCAIRENAEGKVWDRLRFY 115
+V SILK + +V HP++ L+ A +
Sbjct: 219 SYSYESYDFCALVESILKETTIERVRFTSPHPKDFPDHLISLMAKED------------- 265
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV 156
R QIH PL+ G + + +K+S KE+ LDLV
Sbjct: 266 RFSSQIH-----MPLQAGSSKVLRD-MKRSYT-KEEYLDLV 299
>sp|A8Z642|MIAB_SULMW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Sulcia
muelleri (strain GWSS) GN=miaB PE=3 SV=1
Length = 453
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ K Y E +GCQMN++D+E+V SIL + G+ K + +EA++IL+ TC+IR+ +E K+
Sbjct: 2 IKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILL 61
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
R+ +K I KK+ + IG+LGCMA + K +++++ ++LV GPDSY+++P L+
Sbjct: 62 RI---NQIKFIIKKNN--DILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLIN 114
Query: 171 LTYSNQ-TAINVLLSLDETYADITPK 195
+ + I+ S ETYADI PK
Sbjct: 115 NFFKKKGEYISTSFSKTETYADIIPK 140
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E ++AFV+IMRGCDNMCT+C+VPFTRGRE+SR SI+ E + L K Y E+ NV
Sbjct: 143 EKKITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKECKFLFKKGYKEIILLGQNV 202
>sp|A4SCW6|MIAB_PROVI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=miaB PE=3 SV=1
Length = 448
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y FGCQMN D+ ++ +IL G+ +AD++++ TCA+RENA ++ +L+F
Sbjct: 10 YIHTFGCQMNQADSAIITAILMDGGFRVAGSQEDADIVILNTCAVRENAVERITHQLQFL 69
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175
R K+ K L +GV GC+ + LK+ +LE +D +AGPD+Y++LP L+
Sbjct: 70 RGAKRRKKS-----LLVGVAGCVPQHLKREMLEMFPVIDFLAGPDTYRNLPALIGDAEEG 124
Query: 176 QTAINVLLSLDETYADITP 194
+ + ++ETYA I P
Sbjct: 125 KRPAALEFRIEETYAGIDP 143
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 5 LNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQM 64
L E V AFV + RGC+NMC +C+VPFTRGRERS+P +++DEVR + +K Y E+
Sbjct: 144 LREVGVGAFVPVTRGCNNMCAFCVVPFTRGRERSQPFSAVMDEVRRVVEKGYGEITLLGQ 203
Query: 65 NVN 67
NVN
Sbjct: 204 NVN 206
>sp|B3ENP4|MIAB_CHLPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Chlorobium phaeobacteroides (strain BS1) GN=miaB PE=3
SV=1
Length = 447
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 41 MQSILD-EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
M SI+ V ++ KVY FGCQMN DTE++ ++L+ GY AD++++ TCA
Sbjct: 1 MNSIIKGNVLQMTKKVYIRTFGCQMNQADTEIITALLQDEGYVMTGSEERADLVILNTCA 60
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAG 158
+RENA K+ ++ + K R+ P L +GV+GC+ + ++ + +D +AG
Sbjct: 61 VRENAVEKIL------HTLDHMKGKRRSRPGLLVGVIGCVPQYYREKMFGMADGIDFLAG 114
Query: 159 PDSYKDLPRLLALTYSNQTAINVLLSLDETYADITP 194
PD+Y+ LP ++A + S DETY I P
Sbjct: 115 PDTYRQLPAMIANAGQGIRGADFGFSSDETYCGIEP 150
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
++SAF+ +MRGC+N C +C+VPFTRG+ERSRP +S+L++V L+ Y E+ NVN
Sbjct: 155 TISAFIPVMRGCNNRCAFCVVPFTRGKERSRPFRSVLEDVGRLAASGYKEITLLGQNVNS 214
Query: 69 ----------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
TE++ + ++ ++ +HP++ LV A R N
Sbjct: 215 YSDDEAACDFTELLDRVAVAAEGVRIRFTTSHPKDISESLVRVIAARNN 263
>sp|Q28UJ8|MIAB_JANSC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Jannaschia sp. (strain CCS1) GN=miaB PE=3 SV=1
Length = 462
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 47 EVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEG 106
E ++ K++ + +GCQMNV D+E + L GY +VN P AD+IL+ TC IRE A
Sbjct: 22 EAPQMTKKLFVKTYGCQMNVYDSERMAEALGGEGYEQVNTPEGADMILLNTCHIREKAAE 81
Query: 107 KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166
K++ L R ++ + LKIGV GC+A+ + ++ ++ +DLV GP +Y LP
Sbjct: 82 KMYSELGRLRPLRDANPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQTYHRLP 136
Query: 167 RLLALTYSNQTAINVLLSLDETYADITPKAVSTDG 201
+++ + + A++ ++ + ++ PKA +T G
Sbjct: 137 KMMEAVNAGEKALDTDFPEEDKFLNL-PKARATRG 170
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SR + ++ E R L D+ E+ NVN
Sbjct: 172 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRSAERLMAEARDLVDRGVREITLLGQNVN 228
>sp|B4SCB6|MIAB_PELPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 /
BU-1) GN=miaB PE=3 SV=1
Length = 440
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
+ Y FGCQMN D+ + S+L+ +GY A +IL+ TCA+RENA ++ L
Sbjct: 7 NTFYIHTFGCQMNQADSATITSLLQQAGYVAAESEDRAGIILLNTCAVRENAVDRIEHYL 66
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+ + +K+ K+ L +G+LGC+ + ++ + A+DL+AGPD+Y+ LP+L+
Sbjct: 67 QHLQGLKKRDKR-----LIVGILGCIPQHQREEMFATSPAIDLLAGPDTYRTLPQLIEQA 121
Query: 173 YSNQTAINVLLSLDETYADITP 194
S ++ ++ ETY I P
Sbjct: 122 RSGAKPFSLDFNVAETYEGIDP 143
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 14/111 (12%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
+ S+SAFV +MRGC+NMC YC+VPFTRGRERS P ++++ EV+ L Y E+ NV
Sbjct: 146 QGSISAFVPVMRGCNNMCAYCVVPFTRGRERSHPFRAVMGEVQKLVASGYSEITLLGQNV 205
Query: 67 N---DTE-------VVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
N D E ++ ++ ++ ++V +HP++ LV T A R N
Sbjct: 206 NSYDDPEQGVNFAALLDAVSCAAPQARVRFTTSHPKDISGELVRTIANRPN 256
>sp|Q3B6A6|MIAB_PELLD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pelodictyon luteolum (strain DSM 273) GN=miaB PE=3
SV=1
Length = 446
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+ Y + FGCQMN D+ ++ +L +G+ + + ++ADV+L+ TCA+RENA K+ L
Sbjct: 6 RFYIQTFGCQMNEADSGIIARVLLDAGFRRADTEQDADVVLLNTCAVRENAVEKIAHLLE 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ K K+ +T L++GVLGC+ + ++ + + A+D +AGPDSY+ LP L+
Sbjct: 66 HLKGAK---KRRKT--LQVGVLGCVPQHQREEMFSRFPAIDFIAGPDSYRRLPSLIDDAA 120
Query: 174 SNQTAINVLLSLDETYADI 192
S + + ETY I
Sbjct: 121 SAVRSAMLDFDPSETYVGI 139
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E +SAF+ +MRGC+NMC +C+VPFTRGRERS+P+ + E R L++ Y E+
Sbjct: 141 QVREGRISAFIPVMRGCNNMCAFCVVPFTRGRERSQPLAMVTGEARELAEAGYREITLLG 200
Query: 64 MNVN 67
NVN
Sbjct: 201 QNVN 204
>sp|B2V930|MIAB_SULSY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=miaB
PE=3 SV=1
Length = 437
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y + FGCQMNVND+E + IL++ GY+ + EADVILV TC++RE + KV L
Sbjct: 2 KFYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALG 61
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ + KKH + IGV GC+A+R + +K +D+V G + LP LL
Sbjct: 62 EFKKV----KKHNPNAV-IGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAK 116
Query: 174 SNQTAINVLLSLDE 187
S AI +L +DE
Sbjct: 117 SGNKAIEILEEIDE 130
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E+ +AFV+++RGCD CTYCIVP TRGRERSR + IL EV+ L + E+ NV
Sbjct: 143 ENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILREVQYLVEDGVKEIHLIGQNV 202
Query: 67 N-------DTEVVWSILKS----SGYSKV----NHPREAD 91
D + W +LK+ G ++ HPR+ D
Sbjct: 203 TAYGKDFGDVK-FWELLKAVAEVDGVERIRFTTGHPRDLD 241
>sp|Q5L0E8|MIAB_GEOKA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus kaustophilus (strain HTA426) GN=miaB PE=3
SV=1
Length = 531
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ SI +E R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVKYVKDFSIPEEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
EA+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + K +
Sbjct: 116 EANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEESVVKKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKV 220
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVND-----TEVVWSI------LKSSGYSKV----NHPREADVILVMTCAIREN 103
NVN T++ + + L+ +++ +HPR+ D L+ A R N
Sbjct: 279 QNVNAYGKDFTDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEVLAKRGN 333
>sp|A1UU39|MIAB_BARBK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
GN=miaB PE=3 SV=1
Length = 458
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KV+ + +GCQMNV D++ + L + GY P +AD+ILV TC IRE A K++
Sbjct: 14 SKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTQTPNDADLILVNTCHIREKAAEKLYSD 73
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L R M+Q K+ PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 74 LGRLRMMRQ--KRTSEKPLMIGVTGCVAQAEGDEILRRSPTVDLVVGPQMYHRLPELLQQ 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
+ + ++++ + + P
Sbjct: 132 AQQGKKIVETNYAVEDKFNHLPP 154
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I DE R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITDEARQLIEADVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSTDGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDESLI 267
>sp|A9IMW7|MIAB_BART1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
GN=miaB PE=3 SV=1
Length = 458
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQERTPDK--PLTVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPELLEKAK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ I ++++ +A + P
Sbjct: 134 QGKKIIETDYAVEDKFAHLPP 154
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQSADGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>sp|B4S564|MIAB_PROA2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=miaB PE=3 SV=1
Length = 441
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
++ KV FGCQMN DTE++ S+L + GY V +AD++++ TCA+RENA K+
Sbjct: 1 MTKKVSIRTFGCQMNQADTEIISSLLTAEGYCLVAEEDDADLVMLNTCAVRENAVEKIMH 60
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170
L + R L +GV+GC+ + ++ + +K +D +AGPDSY+ LP L+
Sbjct: 61 HLD-----SLKGLRRRRRGLVVGVIGCVPQYYREEMFQKSGVIDFIAGPDSYRKLPGLIR 115
Query: 171 LTYSNQTAINVLLSLDETYADITP 194
+ + L+ ETY DI P
Sbjct: 116 NAFQGIRGAELFLTQSETYGDIEP 139
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 14/109 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN- 67
S+SAF+ +MRGC+NMC +C+VPFTRGRERSR +QS+LDEVR L + Y E+ NVN
Sbjct: 144 SISAFIPVMRGCNNMCAFCVVPFTRGRERSRSLQSVLDEVRRLEGQGYRELTLLGQNVNS 203
Query: 68 --DTE-------VVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
D E ++ + K++G +V +HP++ LV A REN
Sbjct: 204 YRDDEAGADFALLLDEVSKAAGEMRVRFTTSHPKDISEDLVNVVAQREN 252
>sp|Q6G4V6|MIAB_BARHE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bartonella henselae (strain ATCC 49882 / Houston 1)
GN=miaB PE=3 SV=1
Length = 458
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+ILV TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
R M+Q + PL +GV GC+A+ +L + +DLV GP Y LP LL T
Sbjct: 76 RLRVMRQERTPDK--PLMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPDLLEQTK 133
Query: 174 SNQTAINVLLSLDETYADITP 194
+ + ++++ +A + P
Sbjct: 134 QGKKIVATEYAVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQNVNGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>sp|Q6G0N1|MIAB_BARQU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bartonella quintana (strain Toulouse) GN=miaB PE=3
SV=1
Length = 458
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+ + +GCQMNV D++ + L S GY P +AD+IL+ TC IRE A K++ L
Sbjct: 16 KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAEKLYSDLG 75
Query: 114 FYRSMKQIHKKHRTF--PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
R M+Q RT PL IGV GC+A+ +L + +DLV GP Y LP LL
Sbjct: 76 RLRVMRQA----RTLDKPLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPDLLEQ 131
Query: 172 TYSNQTAINVLLSLDETYADITP 194
T + + +++ +A + P
Sbjct: 132 TKQGKKIVETDYPVEDKFAHLPP 154
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
VSAF+++ GCD CT+C+VP+TRG E SR ++ I +E R L + E+ NVN
Sbjct: 165 VSAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGW 224
Query: 69 ------------TEVVWSILKSSGYSKV----NHPREADVILV 95
++++ + K G ++ +HPR+ D L+
Sbjct: 225 HGQIANGKTWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSLI 267
>sp|B5YE40|MIAB_DICT6 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM
3960 / H-6-12) GN=miaB PE=3 SV=1
Length = 440
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +D+E V IL++ GY+ EAD+IL+ TC++RE AE KV+ +L
Sbjct: 3 KYYIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLG 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K+ R L IG+ GCMA+R+K+ L+EK +D V G + +LP++L
Sbjct: 63 ELRKLKK-----RNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKIL 113
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E+ A++ I+ GC+N CTYCIVP+ RGRE+SR + I+ EV L+ + EV NV
Sbjct: 142 ENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQNV 201
Query: 67 N 67
+
Sbjct: 202 D 202
>sp|Q5LLM0|MIAB_RUEPO (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /
DSS-3) GN=miaB PE=3 SV=2
Length = 439
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSELG 65
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L A T
Sbjct: 66 RFKGLKAAKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKTR 120
Query: 174 SNQTAINVLLSLDETYADIT--PKA 196
+ + A++ ++ + + PKA
Sbjct: 121 AGEKALDTDFPEEDKFEKLKGRPKA 145
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND-- 68
+AF+++ GCD C +C+VP+TRG E SRP IL E L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREANELVERGVREITLLGQNVNAYH 209
Query: 69 ----------TEVVWSILKSSGYSKV----NHPRE-ADVILVM--TCA 99
++W + K G ++ +HP + AD ++ TCA
Sbjct: 210 GAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPNDMADDLIEAHGTCA 257
>sp|B2IIK5|MIAB_BEII9 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
DSM 1715 / NCIB 8712) GN=miaB PE=3 SV=1
Length = 510
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D E + +L GY++ + P +AD++++ TC IRE+A KV+ L
Sbjct: 35 KLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLVILNTCHIREHAAEKVFSELG 94
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
R +K ++ P+KI V GC+A+ + +L +++A+DLV GP SY LP LL
Sbjct: 95 KLRLLK-AEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVDLVVGPQSYHRLPDLL 149
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ E V AFV++ GCD C++C+VP+TRG E SRP+++IL EV L EV
Sbjct: 179 KIAERGVGAFVTVQEGCDKFCSFCVVPYTRGAETSRPVEAILAEVETLIASGVREVTLIG 238
Query: 64 MNVN 67
NVN
Sbjct: 239 QNVN 242
>sp|B0T155|MIAB_CAUSK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Caulobacter sp. (strain K31) GN=miaB PE=3 SV=1
Length = 450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
++Y + +GCQMNV D+E + +L+ GY V+ P AD++++ TC IRE A KV+ L
Sbjct: 8 RLYIKTYGCQMNVYDSERMADVLRPLGYGIVDEPEGADLVVLNTCHIREKATEKVYSELG 67
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+ + MK K + + V GC+A+ + ++ ++ A+DLV GP +Y LP L+A +
Sbjct: 68 YIKQMKG-RKAEAGGQMTVAVAGCVAQAEGQEIMRRQPAVDLVVGPQAYHQLPELIARAH 126
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
VSAF+++ GCD CT+C+VP+TRG E SRP + I DE R L+D+ EV NVN
Sbjct: 154 GVSAFLTVQEGCDKFCTFCVVPYTRGGEWSRPPEQIEDEARRLADQGVREVTLLGQNVNA 213
Query: 69 --------TEVVWSILKSSGYSKV----NHPRE 89
+V + K G ++ +HPR+
Sbjct: 214 YDGGGYTLARLVRRLAKIPGLDRIRYTTSHPRD 246
>sp|A7HZ82|MIAB_PARL1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
/ NCIMB 13966) GN=miaB PE=3 SV=1
Length = 467
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K++ + +GCQMNV D+ + ++ SGY++V+ P +AD++++ TC IRE A KV+ L
Sbjct: 16 KIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTCHIREKAAEKVYSELG 75
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LT 172
R +K+ K R L IGV GC+A+ + + + +DLV GP +Y LP +A L
Sbjct: 76 RLRELKK-EKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGPQTYHRLPEYVARLA 134
Query: 173 YSNQTAINVLLSLDETYADI 192
+ +D+ +A +
Sbjct: 135 NGGPGIVETEFPVDDKFASL 154
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
+AF++I GCD CT+C+VP+TRG E SRP+ ILDE R+L D E+ NVN
Sbjct: 166 GATAFLTIQEGCDKFCTFCVVPYTRGSEFSRPVARILDEARSLVDAGVREITLLGQNVN- 224
Query: 69 TEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSM-----KQIHK 123
W G + P + IR AE + RLR+ S +++
Sbjct: 225 ---AW-----HGEDQAGRP------ATLGYLIRALAEIEGLARLRYTTSHPRDMDEELIA 270
Query: 124 KHRTFP 129
HR P
Sbjct: 271 AHRDVP 276
>sp|A4IMH7|MIAB_GEOTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=miaB PE=3 SV=2
Length = 523
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 33 RGRERSRPMQ--SILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPR 88
RG+E + ++ +I DE R + K Y +GCQMN +DTEV+ I + GY + P
Sbjct: 56 RGKEEVQYVKDFTIPDEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPE 115
Query: 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSL 146
+A+VIL+ TCAIRENAE KV+ L + + +K + L +GV GCM+ E + +
Sbjct: 116 DANVILLNTCAIRENAENKVFGELGYLKPLKTTNPD-----LLLGVCGCMSQEEAVVNKI 170
Query: 147 LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
L++ Q +DL+ G + LP +L Y ++ + + S + + PK
Sbjct: 171 LKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPK 219
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + ++ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 219 KVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLG 278
Query: 64 MNVN 67
NVN
Sbjct: 279 QNVN 282
>sp|Q6MLC6|MIAB_BDEBA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM
50701 / NCIB 9529 / HD100) GN=miaB PE=3 SV=1
Length = 453
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
VY +GCQMNVNDTE ++++L+ + V P++A +I++ +C++RE KV+ +
Sbjct: 23 VYISTYGCQMNVNDTERMYALLEMQNFVPVTDPKKASLIIINSCSVREKPVHKVYSEVGT 82
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
Y+ MK+ + + LKIGV GC+ ++ K++L++ + +D V G D LP+L+A +++
Sbjct: 83 YKYMKRKNPE-----LKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAKSFA 137
Query: 175 NQ 176
+
Sbjct: 138 GE 139
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND- 68
V+ +V+I +GCDN CT+C+VP+TRGRE+SRP+Q IL ++R L + EV NVN
Sbjct: 164 VATYVNITKGCDNFCTFCVVPYTRGREKSRPVQHILTDIRHLVKRGVKEVTLLGQNVNSY 223
Query: 69 --------TEVVWSILKSSGYSKV----NHPREADVILVMTCAIREN 103
+++ + K + ++ +HP++ + LV A N
Sbjct: 224 QGDEGIDFADLLAKVAKETDVERIRYTTSHPKDFNQKLVDVMAEHSN 270
>sp|A9VS16|MIAB_BACWK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus weihenstephanensis (strain KBAB4) GN=miaB
PE=3 SV=1
Length = 509
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY EADVIL+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+ A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+ NVN
Sbjct: 211 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEITLLGQNVN 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,004,899
Number of Sequences: 539616
Number of extensions: 4062622
Number of successful extensions: 12865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 9744
Number of HSP's gapped (non-prelim): 2163
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)