Query psy3863
Match_columns 285
No_of_seqs 337 out of 2388
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:22:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355|consensus 100.0 1.4E-50 3E-55 381.1 11.9 228 28-278 25-285 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 1.2E-42 2.6E-47 338.1 17.0 206 52-275 2-241 (437)
3 PRK14327 (dimethylallyl)adenos 100.0 9.5E-38 2.1E-42 310.4 17.4 208 52-274 66-307 (509)
4 PRK14340 (dimethylallyl)adenos 100.0 1.8E-36 3.9E-41 297.2 17.6 211 53-277 7-246 (445)
5 PRK14328 (dimethylallyl)adenos 100.0 1.4E-35 3.1E-40 290.2 17.7 210 53-276 2-244 (439)
6 KOG2492|consensus 100.0 7.5E-36 1.6E-40 283.2 15.0 182 51-234 71-261 (552)
7 TIGR01574 miaB-methiolase tRNA 100.0 1.5E-35 3.2E-40 290.0 15.3 211 54-277 1-245 (438)
8 PRK14332 (dimethylallyl)adenos 100.0 1.7E-35 3.6E-40 290.7 15.6 212 52-277 10-249 (449)
9 PRK14335 (dimethylallyl)adenos 100.0 8.2E-35 1.8E-39 286.2 17.2 214 54-276 2-255 (455)
10 PRK14333 (dimethylallyl)adenos 100.0 5E-35 1.1E-39 287.1 15.2 211 53-278 7-254 (448)
11 PRK14329 (dimethylallyl)adenos 100.0 1.5E-34 3.2E-39 285.2 17.4 213 53-277 24-271 (467)
12 PRK14337 (dimethylallyl)adenos 100.0 2.1E-34 4.5E-39 282.6 16.9 211 53-277 4-247 (446)
13 PRK14326 (dimethylallyl)adenos 100.0 3.1E-34 6.8E-39 285.1 17.7 208 53-274 14-252 (502)
14 PRK14336 (dimethylallyl)adenos 100.0 2.1E-34 4.6E-39 280.5 14.9 190 54-277 3-222 (418)
15 PRK14338 (dimethylallyl)adenos 100.0 1E-33 2.2E-38 278.7 15.6 202 53-278 21-254 (459)
16 PRK14331 (dimethylallyl)adenos 100.0 2.6E-33 5.7E-38 274.0 17.6 208 54-274 2-240 (437)
17 PRK14862 rimO ribosomal protei 100.0 9.9E-33 2.2E-37 270.4 16.0 171 52-242 7-199 (440)
18 PRK14325 (dimethylallyl)adenos 100.0 4.6E-32 9.9E-37 265.6 17.5 210 53-276 4-246 (444)
19 TIGR01578 MiaB-like-B MiaB-lik 100.0 6.2E-32 1.3E-36 263.3 15.5 198 54-274 1-226 (420)
20 PRK14330 (dimethylallyl)adenos 100.0 6.4E-32 1.4E-36 264.0 14.8 206 54-276 2-237 (434)
21 PRK14334 (dimethylallyl)adenos 100.0 2.2E-31 4.7E-36 260.8 15.9 204 54-277 2-235 (440)
22 PF00919 UPF0004: Uncharacteri 100.0 1.3E-31 2.9E-36 212.8 10.2 98 54-158 1-98 (98)
23 TIGR01125 MiaB-like tRNA modif 100.0 7.1E-31 1.5E-35 256.2 15.2 204 54-278 1-234 (430)
24 TIGR00089 RNA modification enz 100.0 1E-30 2.2E-35 254.9 15.8 205 54-276 1-236 (429)
25 PRK14339 (dimethylallyl)adenos 100.0 5.2E-31 1.1E-35 256.9 13.2 194 64-277 1-228 (420)
26 TIGR01579 MiaB-like-C MiaB-lik 100.0 6.3E-30 1.4E-34 248.2 16.0 203 57-277 1-236 (414)
27 COG0621 MiaB 2-methylthioadeni 99.7 2E-18 4.4E-23 168.7 8.3 97 6-114 140-250 (437)
28 KOG2492|consensus 99.4 4.7E-14 1E-18 135.2 1.2 50 1-50 211-260 (552)
29 PRK14332 (dimethylallyl)adenos 99.3 1.5E-12 3.2E-17 128.6 7.5 73 8-81 152-233 (449)
30 PRK14336 (dimethylallyl)adenos 99.3 2E-12 4.4E-17 126.4 7.8 75 7-81 121-206 (418)
31 PRK14339 (dimethylallyl)adenos 99.3 2.4E-12 5.3E-17 125.9 8.4 75 7-81 124-212 (420)
32 PRK14337 (dimethylallyl)adenos 99.3 3.9E-12 8.5E-17 125.3 8.6 74 8-81 146-231 (446)
33 PRK14327 (dimethylallyl)adenos 99.3 3.5E-12 7.6E-17 127.7 7.9 71 7-77 209-291 (509)
34 PRK14340 (dimethylallyl)adenos 99.3 1E-11 2.2E-16 122.5 8.0 70 8-77 147-226 (445)
35 PRK14326 (dimethylallyl)adenos 99.2 1.1E-11 2.4E-16 124.0 7.7 74 8-81 155-239 (502)
36 PRK14328 (dimethylallyl)adenos 99.2 8.6E-12 1.9E-16 122.6 6.7 74 8-81 145-229 (439)
37 PRK14330 (dimethylallyl)adenos 99.2 1.1E-11 2.3E-16 121.7 7.3 74 8-81 138-222 (434)
38 TIGR01578 MiaB-like-B MiaB-lik 99.2 1E-11 2.2E-16 121.5 6.9 74 7-80 130-212 (420)
39 PRK14329 (dimethylallyl)adenos 99.2 2E-11 4.3E-16 121.1 8.5 72 7-78 165-252 (467)
40 TIGR01574 miaB-methiolase tRNA 99.2 2.2E-11 4.8E-16 119.7 7.9 74 8-81 143-229 (438)
41 PRK14862 rimO ribosomal protei 99.2 2.2E-11 4.7E-16 119.9 7.2 57 8-64 137-202 (440)
42 PRK14333 (dimethylallyl)adenos 99.2 4.1E-11 9E-16 118.1 8.3 74 9-82 147-238 (448)
43 PRK14331 (dimethylallyl)adenos 99.2 4.4E-11 9.5E-16 117.5 8.3 74 8-81 144-227 (437)
44 PRK14335 (dimethylallyl)adenos 99.2 4.3E-11 9.3E-16 118.3 8.0 69 8-76 150-231 (455)
45 TIGR01579 MiaB-like-C MiaB-lik 99.2 5.2E-11 1.1E-15 116.0 8.2 73 8-80 136-219 (414)
46 TIGR00089 RNA modification enz 99.2 7.3E-11 1.6E-15 115.5 8.4 73 8-80 137-220 (429)
47 PRK14338 (dimethylallyl)adenos 99.1 5.1E-11 1.1E-15 117.9 6.1 75 7-81 152-237 (459)
48 PRK14325 (dimethylallyl)adenos 99.1 1.8E-10 4E-15 113.2 7.9 74 8-81 145-231 (444)
49 TIGR01125 MiaB-like tRNA modif 99.1 4.5E-10 9.8E-15 110.1 9.3 71 8-78 133-214 (430)
50 PRK14334 (dimethylallyl)adenos 99.0 1.6E-09 3.5E-14 106.6 8.6 74 7-81 135-219 (440)
51 PRK00955 hypothetical protein; 98.9 1.4E-09 3.1E-14 110.7 4.9 51 8-58 290-345 (620)
52 PRK01254 hypothetical protein; 98.8 1E-08 2.3E-13 104.6 6.7 44 7-50 369-413 (707)
53 PRK05481 lipoyl synthase; Prov 98.7 2.7E-08 5.8E-13 93.1 7.4 50 7-58 50-103 (289)
54 TIGR00510 lipA lipoate synthas 98.5 3.3E-07 7.2E-12 86.5 7.7 47 7-54 60-109 (302)
55 PRK12928 lipoyl synthase; Prov 98.3 1.3E-06 2.8E-11 82.0 7.6 50 8-59 58-111 (290)
56 KOG4355|consensus 98.1 3.7E-06 8.1E-11 81.1 5.5 76 4-79 181-265 (547)
57 TIGR02026 BchE magnesium-proto 97.9 0.00011 2.4E-09 73.6 12.5 76 89-175 63-138 (497)
58 TIGR03471 HpnJ hopanoid biosyn 97.8 0.00012 2.5E-09 72.8 10.8 71 89-170 68-138 (472)
59 TIGR02026 BchE magnesium-proto 97.8 9.4E-05 2E-09 74.1 9.1 41 10-50 193-233 (497)
60 TIGR03471 HpnJ hopanoid biosyn 97.8 6E-05 1.3E-09 74.8 7.5 40 11-50 197-238 (472)
61 TIGR03550 F420_cofG 7,8-dideme 97.7 6.4E-05 1.4E-09 71.3 6.3 54 10-63 4-62 (322)
62 PRK06245 cofG FO synthase subu 97.6 0.00014 3.1E-09 69.0 6.5 44 11-54 13-59 (336)
63 COG1032 Fe-S oxidoreductase [E 97.3 0.00028 6E-09 68.7 4.6 42 8-50 196-237 (490)
64 PF04055 Radical_SAM: Radical 97.3 0.0006 1.3E-08 55.6 5.8 65 14-78 1-72 (166)
65 PLN02428 lipoic acid synthase 97.2 0.0012 2.6E-08 63.6 7.7 45 10-54 102-148 (349)
66 COG1031 Uncharacterized Fe-S o 97.1 0.0011 2.4E-08 65.6 6.4 68 9-77 182-268 (560)
67 PRK07094 biotin synthase; Prov 97.0 0.0015 3.3E-08 61.4 6.9 41 10-50 39-81 (323)
68 PRK14456 ribosomal RNA large s 96.8 0.0062 1.3E-07 59.2 8.7 90 7-101 118-221 (368)
69 PRK06256 biotin synthase; Vali 96.7 0.0044 9.5E-08 58.7 7.2 66 12-77 59-133 (336)
70 PRK14466 ribosomal RNA large s 96.6 0.009 2E-07 57.6 8.8 89 8-102 101-196 (345)
71 smart00729 Elp3 Elongator prot 96.6 0.0008 1.7E-08 57.2 1.5 40 11-50 2-41 (216)
72 PRK14455 ribosomal RNA large s 96.6 0.0023 4.9E-08 61.9 4.6 89 7-101 106-206 (356)
73 TIGR00433 bioB biotin syntheta 96.6 0.008 1.7E-07 55.6 7.8 67 10-76 28-104 (296)
74 TIGR00423 radical SAM domain p 96.5 0.0053 1.1E-07 57.8 5.9 48 11-58 6-59 (309)
75 PRK14454 ribosomal RNA large s 96.4 0.0083 1.8E-07 57.7 6.6 89 8-102 99-196 (342)
76 TIGR02495 NrdG2 anaerobic ribo 96.3 0.035 7.5E-07 48.0 9.7 81 8-100 14-100 (191)
77 PRK06267 hypothetical protein; 96.2 0.011 2.3E-07 56.9 6.4 67 10-76 27-103 (350)
78 TIGR00640 acid_CoA_mut_C methy 96.2 0.1 2.3E-06 43.5 11.5 106 53-171 3-122 (132)
79 PRK14467 ribosomal RNA large s 96.2 0.0059 1.3E-07 58.9 4.4 89 7-101 96-194 (348)
80 PRK14457 ribosomal RNA large s 96.1 0.006 1.3E-07 58.8 4.4 43 7-50 98-140 (345)
81 PRK14453 chloramphenicol/florf 96.1 0.0059 1.3E-07 58.9 4.1 40 10-50 100-139 (347)
82 TIGR03551 F420_cofH 7,8-dideme 96.0 0.013 2.9E-07 55.9 5.9 64 12-77 41-110 (343)
83 PRK14459 ribosomal RNA large s 96.0 0.0076 1.7E-07 58.7 4.3 42 8-50 119-160 (373)
84 PRK11194 ribosomal RNA large s 95.9 0.0085 1.8E-07 58.4 4.4 88 8-101 101-204 (372)
85 PRK08508 biotin synthase; Prov 95.9 0.017 3.6E-07 53.8 6.0 61 17-77 14-82 (279)
86 TIGR00048 radical SAM enzyme, 95.8 0.011 2.4E-07 57.1 4.5 43 7-50 102-144 (355)
87 PRK14463 ribosomal RNA large s 95.8 0.012 2.6E-07 56.8 4.6 43 7-50 100-142 (349)
88 PRK14468 ribosomal RNA large s 95.7 0.013 2.8E-07 56.5 4.4 43 7-50 90-132 (343)
89 PRK14469 ribosomal RNA large s 95.6 0.014 3E-07 56.1 4.4 42 7-49 98-139 (343)
90 PRK09240 thiH thiamine biosynt 95.5 0.033 7.2E-07 54.0 6.8 66 12-78 76-146 (371)
91 cd01335 Radical_SAM Radical SA 95.4 0.036 7.7E-07 46.2 5.9 28 14-41 1-28 (204)
92 TIGR03700 mena_SCO4494 putativ 95.2 0.032 6.9E-07 53.6 5.3 64 12-77 50-119 (351)
93 PRK14462 ribosomal RNA large s 95.1 0.022 4.8E-07 55.2 4.1 89 7-101 107-207 (356)
94 TIGR03699 mena_SCO4550 menaqui 95.0 0.042 9.2E-07 52.2 5.7 46 12-57 43-94 (340)
95 PRK08445 hypothetical protein; 95.0 0.044 9.6E-07 52.8 5.6 65 12-77 44-113 (348)
96 PRK14465 ribosomal RNA large s 94.8 0.033 7.2E-07 53.7 4.4 87 8-101 103-199 (342)
97 PRK14460 ribosomal RNA large s 94.8 0.033 7.2E-07 53.8 4.3 40 9-49 101-140 (354)
98 TIGR03365 Bsubt_queE 7-cyano-7 94.7 0.1 2.2E-06 47.5 7.0 73 8-83 21-103 (238)
99 PRK14470 ribosomal RNA large s 94.7 0.041 8.9E-07 52.9 4.5 42 8-50 95-136 (336)
100 PRK00955 hypothetical protein; 94.5 0.029 6.2E-07 58.0 3.3 28 208-235 300-335 (620)
101 COG0602 NrdG Organic radical a 94.5 0.074 1.6E-06 47.9 5.4 76 8-84 21-103 (212)
102 TIGR02826 RNR_activ_nrdG3 anae 94.0 0.16 3.5E-06 43.1 6.4 69 13-81 18-89 (147)
103 PRK14464 ribosomal RNA large s 94.0 0.059 1.3E-06 52.0 4.0 39 11-50 97-135 (344)
104 PRK05481 lipoyl synthase; Prov 93.6 0.13 2.8E-06 48.3 5.5 33 199-233 50-91 (289)
105 PF02310 B12-binding: B12 bind 93.5 0.25 5.4E-06 39.2 6.3 62 89-160 51-113 (121)
106 PRK14461 ribosomal RNA large s 93.5 0.09 2E-06 51.2 4.3 42 7-49 104-145 (371)
107 PRK01254 hypothetical protein; 93.4 0.12 2.6E-06 53.8 5.3 28 208-235 380-415 (707)
108 PRK08599 coproporphyrinogen II 93.4 0.12 2.5E-06 49.9 5.0 40 10-50 2-43 (377)
109 TIGR02351 thiH thiazole biosyn 93.2 0.25 5.5E-06 47.8 7.0 65 13-78 76-145 (366)
110 TIGR03821 AblA_like_1 lysine-2 93.2 0.43 9.3E-06 45.5 8.3 55 10-64 96-154 (321)
111 cd02068 radical_SAM_B12_BD B12 93.0 0.64 1.4E-05 37.6 8.1 76 88-175 38-113 (127)
112 TIGR00238 KamA family protein. 92.9 0.12 2.5E-06 49.5 4.1 27 9-35 112-138 (331)
113 PRK07360 FO synthase subunit 2 92.5 0.19 4.1E-06 48.7 4.9 66 12-78 62-133 (371)
114 TIGR00510 lipA lipoate synthas 92.3 0.16 3.5E-06 48.2 4.1 33 200-233 61-102 (302)
115 TIGR02493 PFLA pyruvate format 92.0 0.15 3.3E-06 45.5 3.4 40 11-50 16-57 (235)
116 PRK15108 biotin synthase; Prov 91.9 0.51 1.1E-05 45.4 7.2 68 11-78 43-119 (345)
117 PRK09613 thiH thiamine biosynt 91.9 0.46 9.9E-06 47.8 7.0 66 11-77 85-156 (469)
118 COG0820 Predicted Fe-S-cluster 91.8 0.18 3.8E-06 48.8 3.7 43 7-50 98-140 (349)
119 KOG3799|consensus 91.7 0.054 1.2E-06 45.6 0.2 25 15-39 75-102 (169)
120 TIGR01210 conserved hypothetic 91.7 0.25 5.5E-06 46.8 4.7 41 8-50 13-57 (313)
121 PRK02261 methylaspartate mutas 91.5 3.4 7.4E-05 34.6 10.8 106 55-170 6-131 (137)
122 TIGR01501 MthylAspMutase methy 91.5 3.2 6.8E-05 34.9 10.6 104 55-170 4-126 (134)
123 PRK11145 pflA pyruvate formate 91.4 0.28 6.1E-06 44.3 4.5 41 11-51 21-63 (246)
124 PRK13361 molybdenum cofactor b 90.7 0.82 1.8E-05 43.4 7.2 46 4-49 6-55 (329)
125 cd02071 MM_CoA_mut_B12_BD meth 90.7 3.4 7.3E-05 33.5 9.9 64 88-162 49-112 (122)
126 PRK00164 moaA molybdenum cofac 90.5 0.77 1.7E-05 43.3 6.8 40 11-50 18-60 (331)
127 cd02072 Glm_B12_BD B12 binding 90.2 6.6 0.00014 32.7 11.3 90 70-171 17-125 (128)
128 TIGR02668 moaA_archaeal probab 89.7 0.99 2.2E-05 41.9 6.7 38 11-48 11-49 (302)
129 PLN02389 biotin synthase 89.6 1.1 2.4E-05 43.8 7.1 69 10-78 82-161 (379)
130 PRK05926 hypothetical protein; 89.1 0.98 2.1E-05 44.0 6.4 61 15-77 73-138 (370)
131 PRK12928 lipoyl synthase; Prov 88.6 0.55 1.2E-05 44.2 4.2 33 200-232 58-97 (290)
132 PRK09426 methylmalonyl-CoA mut 88.0 5.9 0.00013 42.0 11.7 106 54-172 584-703 (714)
133 PRK05799 coproporphyrinogen II 87.7 1.2 2.6E-05 42.8 6.0 39 11-50 5-45 (374)
134 TIGR03822 AblA_like_2 lysine-2 87.3 1.1 2.4E-05 42.5 5.4 28 8-35 86-113 (321)
135 PTZ00413 lipoate synthase; Pro 85.7 3.3 7.1E-05 40.8 7.7 66 10-76 149-219 (398)
136 TIGR02666 moaA molybdenum cofa 85.3 2.6 5.7E-05 39.8 6.8 38 12-49 12-53 (334)
137 PRK13762 tRNA-modifying enzyme 85.3 0.57 1.2E-05 44.7 2.3 36 15-50 63-104 (322)
138 PRK09234 fbiC FO synthase; Rev 84.5 2.2 4.9E-05 45.9 6.5 64 12-77 528-597 (843)
139 COG2185 Sbm Methylmalonyl-CoA 84.2 18 0.00039 30.9 10.6 106 53-171 13-132 (143)
140 PRK05927 hypothetical protein; 83.3 1.7 3.7E-05 42.0 4.7 62 14-77 49-116 (350)
141 TIGR02109 PQQ_syn_pqqE coenzym 82.8 2.9 6.3E-05 39.8 6.0 45 8-52 5-53 (358)
142 PRK09234 fbiC FO synthase; Rev 82.2 2.9 6.2E-05 45.1 6.2 53 12-64 73-130 (843)
143 TIGR01290 nifB nitrogenase cof 81.9 1.7 3.7E-05 43.4 4.1 70 9-78 23-107 (442)
144 TIGR03470 HpnH hopanoid biosyn 81.9 6.4 0.00014 37.3 7.9 48 7-54 25-74 (318)
145 PRK05301 pyrroloquinoline quin 81.8 6 0.00013 38.0 7.8 46 7-52 13-62 (378)
146 PLN02951 Molybderin biosynthes 81.6 4.6 9.9E-05 39.3 7.0 43 7-49 53-100 (373)
147 COG1032 Fe-S oxidoreductase [E 81.4 8.9 0.00019 37.2 8.9 44 129-173 102-145 (490)
148 COG2896 MoaA Molybdenum cofact 80.6 3.2 6.8E-05 39.9 5.3 79 6-84 5-115 (322)
149 PF13353 Fer4_12: 4Fe-4S singl 80.5 1.7 3.6E-05 35.2 3.0 25 9-34 5-29 (139)
150 PRK11121 nrdG anaerobic ribonu 80.3 2.5 5.3E-05 35.9 4.1 23 9-32 16-38 (154)
151 cd02067 B12-binding B12 bindin 80.1 14 0.00031 29.2 8.3 61 89-161 50-111 (119)
152 PRK08629 coproporphyrinogen II 80.1 4.3 9.3E-05 40.3 6.3 68 9-77 52-124 (433)
153 COG1060 ThiH Thiamine biosynth 79.9 3.2 6.9E-05 40.6 5.2 53 11-63 60-117 (370)
154 TIGR02491 NrdG anaerobic ribon 79.8 7.3 0.00016 32.9 6.8 41 10-51 16-61 (154)
155 PRK08208 coproporphyrinogen II 79.4 3.7 8.1E-05 40.5 5.6 43 7-50 37-82 (430)
156 PF13394 Fer4_14: 4Fe-4S singl 78.5 1.3 2.8E-05 35.1 1.7 33 17-49 5-39 (119)
157 PRK08444 hypothetical protein; 75.8 5.5 0.00012 38.6 5.5 64 12-77 51-120 (353)
158 COG0502 BioB Biotin synthase a 75.5 8.9 0.00019 37.1 6.8 67 10-77 50-125 (335)
159 TIGR00538 hemN oxygen-independ 69.9 7 0.00015 38.8 4.8 40 10-50 50-92 (455)
160 COG0320 LipA Lipoate synthase 69.8 8.8 0.00019 36.3 5.1 48 7-54 67-115 (306)
161 COG2100 Predicted Fe-S oxidore 69.6 9.6 0.00021 37.0 5.3 75 14-88 111-197 (414)
162 PRK14813 NADH dehydrogenase su 69.1 7 0.00015 34.8 4.1 89 36-140 13-107 (189)
163 COG1180 PflA Pyruvate-formate 67.4 22 0.00047 32.9 7.2 72 10-81 35-113 (260)
164 PRK05628 coproporphyrinogen II 65.1 5.1 0.00011 38.6 2.7 37 12-49 5-47 (375)
165 cd02065 B12-binding_like B12 b 63.8 21 0.00045 28.0 5.6 53 89-157 50-103 (125)
166 PF05818 TraT: Enterobacterial 63.8 6.7 0.00015 35.6 3.0 40 53-94 22-64 (215)
167 PRK09058 coproporphyrinogen II 62.6 12 0.00026 37.2 4.9 42 8-50 60-103 (449)
168 COG1533 SplB DNA repair photol 60.7 22 0.00048 33.6 6.1 72 10-81 29-117 (297)
169 PF06283 ThuA: Trehalose utili 60.7 11 0.00023 33.3 3.7 49 67-116 19-78 (217)
170 TIGR01212 radical SAM protein, 58.0 24 0.00053 33.1 5.9 67 12-79 20-103 (302)
171 PRK09249 coproporphyrinogen II 57.4 20 0.00044 35.6 5.4 40 10-50 50-92 (453)
172 PRK08446 coproporphyrinogen II 57.2 9.7 0.00021 36.5 3.0 31 20-50 10-42 (350)
173 TIGR01957 nuoB_fam NADH-quinon 57.2 15 0.00033 31.3 3.9 85 39-140 5-97 (145)
174 COG0269 SgbH 3-hexulose-6-phos 55.6 87 0.0019 28.5 8.6 94 42-158 96-192 (217)
175 COG1242 Predicted Fe-S oxidore 54.5 69 0.0015 30.5 8.0 97 11-116 25-139 (312)
176 PRK08207 coproporphyrinogen II 54.4 12 0.00027 37.7 3.4 43 7-50 161-207 (488)
177 COG3260 Ni,Fe-hydrogenase III 52.4 34 0.00074 29.1 5.1 35 76-115 36-70 (148)
178 PRK05096 guanosine 5'-monophos 50.7 1.3E+02 0.0029 29.2 9.6 95 37-156 77-176 (346)
179 TIGR03820 lys_2_3_AblA lysine- 50.0 19 0.00041 35.9 3.8 38 10-47 108-146 (417)
180 COG0731 Fe-S oxidoreductases [ 49.1 22 0.00048 33.8 4.0 59 19-80 33-108 (296)
181 PRK09271 flavodoxin; Provision 48.3 70 0.0015 26.9 6.6 65 67-138 16-94 (160)
182 PRK13731 conjugal transfer sur 47.7 16 0.00035 33.7 2.7 27 68-94 68-94 (243)
183 PRK06245 cofG FO synthase subu 47.7 14 0.00029 35.1 2.3 26 208-233 20-52 (336)
184 PRK05904 coproporphyrinogen II 46.8 14 0.0003 35.7 2.3 65 12-77 9-80 (353)
185 PRK13758 anaerobic sulfatase-m 46.5 27 0.0006 33.2 4.3 20 12-31 6-26 (370)
186 COG3925 N-terminal domain of t 46.0 27 0.00058 27.9 3.3 36 69-104 20-55 (103)
187 PF13552 DUF4127: Protein of u 45.8 69 0.0015 32.5 7.2 52 65-116 276-342 (497)
188 PRK14818 NADH dehydrogenase su 45.5 32 0.0007 30.2 4.1 89 37-140 17-110 (173)
189 PRK13695 putative NTPase; Prov 44.0 1E+02 0.0022 25.9 7.1 73 87-169 94-168 (174)
190 COG1313 PflX Uncharacterized F 43.1 8.5 0.00018 36.7 0.2 41 18-58 126-172 (335)
191 COG0535 Predicted Fe-S oxidore 42.8 93 0.002 28.6 7.1 55 7-61 16-74 (347)
192 PRK13347 coproporphyrinogen II 41.7 76 0.0017 31.5 6.7 42 8-50 49-93 (453)
193 PF04016 DUF364: Domain of unk 41.2 1.1E+02 0.0024 25.7 6.7 70 89-175 62-131 (147)
194 PRK07379 coproporphyrinogen II 40.9 1E+02 0.0022 30.1 7.4 74 3-77 4-90 (400)
195 PF02492 cobW: CobW/HypB/UreG, 40.5 44 0.00096 28.5 4.3 29 87-115 140-170 (178)
196 cd01971 Nitrogenase_VnfN_like 40.2 44 0.00095 32.9 4.7 76 55-145 27-104 (427)
197 CHL00076 chlB photochlorophyll 39.8 27 0.00059 35.5 3.2 70 58-145 32-103 (513)
198 PF01910 DUF77: Domain of unkn 39.3 9.4 0.0002 29.8 -0.1 43 25-67 2-45 (92)
199 TIGR03550 F420_cofG 7,8-dideme 37.7 27 0.0006 33.0 2.7 26 208-233 12-46 (322)
200 cd07409 MPP_CD73_N CD73 ecto-5 37.1 83 0.0018 29.0 5.8 49 106-163 169-217 (281)
201 TIGR00106 uncharacterized prot 36.4 23 0.00049 28.0 1.6 40 26-65 5-45 (97)
202 PRK13745 anaerobic sulfatase-m 35.9 26 0.00056 34.3 2.3 23 9-31 12-35 (412)
203 cd03142 GATase1_ThuA Type 1 gl 35.8 52 0.0011 29.7 4.1 33 67-99 23-68 (215)
204 PF13590 DUF4136: Domain of un 35.6 37 0.00081 27.6 2.9 30 69-100 41-70 (151)
205 PF03698 UPF0180: Uncharacteri 33.8 51 0.0011 25.3 3.1 16 71-86 12-27 (80)
206 COG0011 Uncharacterized conser 33.1 25 0.00053 28.2 1.3 48 25-72 6-54 (100)
207 TIGR03282 methan_mark_13 putat 32.6 67 0.0014 31.3 4.4 67 58-145 26-93 (352)
208 CHL00073 chlN photochlorophyll 32.4 28 0.00061 35.1 1.9 71 56-144 41-114 (457)
209 TIGR01754 flav_RNR ribonucleot 30.2 1.3E+02 0.0029 24.4 5.4 64 67-140 16-92 (140)
210 PLN02428 lipoic acid synthase 28.9 86 0.0019 30.5 4.6 29 203-231 103-142 (349)
211 cd01967 Nitrogenase_MoFe_alpha 28.9 74 0.0016 30.7 4.2 48 84-146 59-106 (406)
212 PRK09004 FMN-binding protein M 28.7 1.8E+02 0.0038 24.2 5.9 78 60-142 8-95 (146)
213 cd07410 MPP_CpdB_N Escherichia 28.6 1.2E+02 0.0026 27.6 5.4 22 145-166 211-232 (277)
214 PRK10494 hypothetical protein; 28.4 1.6E+02 0.0035 27.1 6.2 67 67-139 57-131 (259)
215 KOG1420|consensus 28.3 27 0.00058 36.4 1.0 42 235-276 1001-1052(1103)
216 PRK02842 light-independent pro 27.7 40 0.00087 33.2 2.1 75 55-144 39-114 (427)
217 PF01866 Diphthamide_syn: Puta 27.3 85 0.0018 29.6 4.1 45 55-99 214-270 (307)
218 PRK06703 flavodoxin; Provision 27.3 1.3E+02 0.0028 24.7 4.8 67 67-140 17-93 (151)
219 PRK14816 NADH dehydrogenase su 27.2 1.1E+02 0.0024 27.2 4.5 72 55-141 43-122 (182)
220 cd08162 MPP_PhoA_N Synechococc 27.0 1.4E+02 0.003 28.3 5.6 40 128-167 208-247 (313)
221 cd01972 Nitrogenase_VnfE_like 26.7 98 0.0021 30.4 4.6 73 57-144 30-106 (426)
222 PRK05660 HemN family oxidoredu 26.7 3E+02 0.0065 26.6 7.9 40 9-50 6-49 (378)
223 KOG2672|consensus 26.6 1.1E+02 0.0024 29.3 4.7 40 13-52 114-155 (360)
224 PRK09057 coproporphyrinogen II 26.4 1.1E+02 0.0023 29.7 4.8 39 11-50 6-46 (380)
225 PRK11104 hemG protoporphyrinog 26.3 2.8E+02 0.006 23.8 6.9 46 69-115 18-72 (177)
226 cd05569 PTS_IIB_fructose PTS_I 26.0 57 0.0012 25.4 2.3 30 70-99 19-63 (96)
227 PRK08745 ribulose-phosphate 3- 25.8 5E+02 0.011 23.4 9.6 67 88-160 131-201 (223)
228 COG2044 Predicted peroxiredoxi 25.2 32 0.00069 28.5 0.7 57 39-95 62-119 (120)
229 TIGR03278 methan_mark_10 putat 25.1 36 0.00077 33.7 1.2 15 19-33 8-22 (404)
230 COG1618 Predicted nucleotide k 24.5 3.5E+02 0.0076 23.9 7.0 72 88-173 99-175 (179)
231 cd07411 MPP_SoxB_N Thermus the 24.4 1.9E+02 0.0041 26.2 5.8 37 128-165 184-220 (264)
232 PRK03958 tRNA 2'-O-methylase; 24.3 1.7E+02 0.0036 25.9 5.1 70 38-112 63-140 (176)
233 TIGR01305 GMP_reduct_1 guanosi 24.1 6.8E+02 0.015 24.4 9.7 96 37-156 76-175 (343)
234 PRK07308 flavodoxin; Validated 24.0 1.9E+02 0.004 23.6 5.2 64 68-138 18-91 (146)
235 PRK05568 flavodoxin; Provision 24.0 1.7E+02 0.0037 23.5 4.9 65 68-140 18-93 (142)
236 cd07406 MPP_CG11883_N Drosophi 23.9 1.9E+02 0.004 26.2 5.7 38 128-166 172-209 (257)
237 PRK14815 NADH dehydrogenase su 23.9 1.6E+02 0.0035 26.1 5.0 89 37-140 19-113 (183)
238 COG0426 FpaA Uncharacterized f 23.8 2E+02 0.0043 28.5 6.1 100 33-141 222-342 (388)
239 PF03159 XRN_N: XRN 5'-3' exon 23.5 2.6E+02 0.0056 25.6 6.4 44 92-140 174-217 (237)
240 PF02875 Mur_ligase_C: Mur lig 23.0 2.5E+02 0.0055 20.8 5.4 40 91-140 13-52 (91)
241 PRK03094 hypothetical protein; 22.9 1E+02 0.0022 23.7 3.1 17 68-85 10-26 (80)
242 TIGR01285 nifN nitrogenase mol 22.4 91 0.002 30.9 3.5 48 83-145 62-109 (432)
243 PRK14820 NADH dehydrogenase su 22.2 2.9E+02 0.0063 24.4 6.2 88 36-140 18-113 (180)
244 COG2890 HemK Methylase of poly 22.0 35 0.00076 31.8 0.5 14 264-277 177-190 (280)
245 COG1031 Uncharacterized Fe-S o 21.9 74 0.0016 32.4 2.7 24 212-235 204-228 (560)
246 PRK13209 L-xylulose 5-phosphat 21.6 2.2E+02 0.0048 25.7 5.7 47 38-84 20-74 (283)
247 TIGR01861 ANFD nitrogenase iro 21.2 1.3E+02 0.0029 30.7 4.4 74 58-145 71-146 (513)
248 cd01973 Nitrogenase_VFe_beta_l 21.2 1.2E+02 0.0025 30.4 4.0 48 84-145 58-105 (454)
249 PRK13307 bifunctional formalde 20.9 6.5E+02 0.014 24.9 9.0 94 41-160 265-360 (391)
250 PF08392 FAE1_CUT1_RppA: FAE1/ 20.7 75 0.0016 30.2 2.4 77 70-161 89-174 (290)
251 PF08821 CGGC: CGGC domain; I 20.7 4.5E+02 0.0097 21.0 7.5 57 72-140 20-77 (107)
252 PRK06411 NADH dehydrogenase su 20.7 1.8E+02 0.0038 25.8 4.6 86 39-140 23-114 (183)
253 PRK04169 geranylgeranylglycery 20.5 2.8E+02 0.0062 25.3 6.1 88 10-104 114-221 (232)
254 PRK14819 NADH dehydrogenase su 20.4 1E+02 0.0022 28.9 3.1 74 55-141 33-112 (264)
255 cd01748 GATase1_IGP_Synthase T 20.2 2.6E+02 0.0057 24.0 5.6 38 56-97 2-44 (198)
256 PF07209 DUF1415: Protein of u 20.1 1.4E+02 0.0031 26.3 3.8 37 235-274 77-113 (174)
No 1
>KOG4355|consensus
Probab=100.00 E-value=1.4e-50 Score=381.14 Aligned_cols=228 Identities=20% Similarity=0.265 Sum_probs=191.3
Q ss_pred ccCccccCCCCCChhhhhhHHhh-----cC-ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccc
Q psy3863 28 IVPFTRGRERSRPMQSILDEVRA-----LS-DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 28 iip~~rG~~~Sr~~~~IV~e~~~-----~g-~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr 101 (285)
++|.++-|..|+|.+.-- +-+. -| +++||.||||.+|.+|+|+|++.|++.||.+++ +++||+|++|||||+
T Consensus 25 v~pk~~kr~~~k~~q~ee-~~~ps~s~ipgtqki~iktwgcshnnsdseymagqlaaygy~lte-~eeadlwllnsctvk 102 (547)
T KOG4355|consen 25 VNPKTNKRISSKPDQIEE-SNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAGQLAAYGYALTE-PEEADLWLLNSCTVK 102 (547)
T ss_pred cccccccccccCchhhhh-cCCCccccCCCccEEEEEeecccCCCchhHHHhhhHHhhhhccCC-cccccEEEecccccC
Confidence 567777776666644322 2211 12 679999999999999999999999999999998 999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeee
Q psy3863 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINV 181 (285)
Q Consensus 102 ~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~ 181 (285)
+++|+.+++.|.+.+.. ++.++++||++|..++. +.+.++ .|+|.+|+++++|++|++++|+.+..+
T Consensus 103 npsed~frn~i~~g~~~----------~k~~viagcvpqg~p~~--dyl~gl-svigvqqidrvvevveetlkghsvrll 169 (547)
T KOG4355|consen 103 NPSEDAFRNLITRGRSG----------KKPLVIAGCVPQGSPDL--DYLEGL-SVIGVQQIDRVVEVVEETLKGHSVRLL 169 (547)
T ss_pred CchHHHHHHHHHhhhcC----------CCceEEEecCCCCCcch--hhhcCc-eEeehhhhhHHHHHHHHHhccceEeee
Confidence 99999999999988632 45899999999998873 566678 499999999999999999999988755
Q ss_pred eccccccccccCCCccCCCCeeEEEE-cCc---c--c--cccCCcccccChHHHHhhhhcccC-----------CcchHh
Q psy3863 182 LLSLDETYADITPKAVSTDGRRSIYV-DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSMD-----------DGGGAS 242 (285)
Q Consensus 182 ~~~~~~~~~~~~P~~~~~~~~~a~~i-~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~~-----------d~g~~~ 242 (285)
......+ ++ +|+.++++..+++.| +|| | | +||||.+.|||++++|++|+++|+ ||||||
T Consensus 170 ~rr~~ga-ld-lpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgayg 247 (547)
T KOG4355|consen 170 TRRTLGA-LD-LPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYG 247 (547)
T ss_pred ecccccc-cC-chhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhh
Confidence 4332223 55 799999999999999 998 5 7 799999999999999999999884 999999
Q ss_pred H--------hHHHhcccccccccccceeEEEecccCCCCccccc
Q psy3863 243 M--------SSRQCGRFQSTLIDGHRLCVTQLYLTNQDYPIPRK 278 (285)
Q Consensus 243 ~--------ll~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 278 (285)
+ |||++. .+||++ ||||+||||||||++.+
T Consensus 248 rdig~slp~ll~klv---~~iPe~---cmlr~gmTnpP~ilehl 285 (547)
T KOG4355|consen 248 RDIGKSLPKLLWKLV---EVIPES---CMLRAGMTNPPYILEHL 285 (547)
T ss_pred hhhhhhhHHHHHHHH---Hhcchh---hhhhhcCCCCchHHHHH
Confidence 5 556654 468988 99999999999998753
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-42 Score=338.12 Aligned_cols=206 Identities=28% Similarity=0.452 Sum_probs=165.5
Q ss_pred CceeeEEEeccccCcchhHHHHHHHhhCCe-eecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy3863 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGY-SKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL 130 (285)
Q Consensus 52 g~kv~i~TyGC~~N~~dsell~~lL~~~G~-~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~ 130 (285)
..|+++.||||+||.+|||.|+++|...|| +.++++++||++|||||+||++|++|++++|+++++.| |++
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~--------p~~ 73 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLK--------PDA 73 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhC--------CCC
Confidence 358999999999999999999999999999 69999999999999999999999999999999998542 689
Q ss_pred EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccc--cccccccCCCccCCCCeeEEEE-
Q psy3863 131 KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSL--DETYADITPKAVSTDGRRSIYV- 207 (285)
Q Consensus 131 ~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~a~~i- 207 (285)
+|+||||+||.+ +++++++|+||+|+|++++++++++|+....++.......+. .+.+.. +|.. +.+...||+-
T Consensus 74 ~iiVtGC~aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~A~v~I 150 (437)
T COG0621 74 KIIVTGCLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDK-LPPR-REGGVRAFVKI 150 (437)
T ss_pred EEEEeCCccccC-HHHHhhCCCceEEECCccHHHHHHHHHHHhhccccccccccccccccccc-CCCC-cCCCeEEEEEh
Confidence 999999999999 788999999999999999999999999775432221111111 112222 3333 5567788874
Q ss_pred -cCc---c--c--cccCCcccccChHHHHhhhhcccC-----------CcchHh-----------HhHHHhccccccccc
Q psy3863 208 -DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSMD-----------DGGGAS-----------MSSRQCGRFQSTLID 257 (285)
Q Consensus 208 -~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~~-----------d~g~~~-----------~ll~~~~~~~~~~~~ 257 (285)
+|| | | ||+||++||+|+++||++++.+.+ |++||| +||++|.+ +|.
T Consensus 151 ~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~----I~G 226 (437)
T COG0621 151 QEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK----IPG 226 (437)
T ss_pred hcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc----CCC
Confidence 999 5 7 999999999999999999987552 666666 46666555 443
Q ss_pred ccceeEEEecccCCCCcc
Q psy3863 258 GHRLCVTQLYLTNQDYPI 275 (285)
Q Consensus 258 ~~~~~~~~~~~~n~~~~~ 275 (285)
.=++|+||.+|--+.
T Consensus 227 ---~~riR~~~~~P~~~~ 241 (437)
T COG0621 227 ---IERIRFGSSHPLEFT 241 (437)
T ss_pred ---ceEEEEecCCchhcC
Confidence 379999999994443
No 3
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.5e-38 Score=310.40 Aligned_cols=208 Identities=26% Similarity=0.427 Sum_probs=162.2
Q ss_pred CceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcE
Q psy3863 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLK 131 (285)
Q Consensus 52 g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~ 131 (285)
++++++.||||++|++|||.|+++|.+.||+.++++++||+|||||||||++|++|+++.|++++++|+ .+|+++
T Consensus 66 ~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~-----~~p~~~ 140 (509)
T PRK14327 66 GRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKR-----ENPDLL 140 (509)
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHh-----hCCCCE
Confidence 367999999999999999999999999999999999999999999999999999999999999988776 346889
Q ss_pred EEEEccchhhhh--HHHHhhCCCccEEECCCCcCCHHHHHHhhccCCe-eeeeeccccccccccCCCccCCCCeeEEEE-
Q psy3863 132 IGVLGCMAERLK--KSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQT-AINVLLSLDETYADITPKAVSTDGRRSIYV- 207 (285)
Q Consensus 132 IvVtGC~aq~~~--~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i- 207 (285)
|+|+|||||.++ +++.+.+|+||+|+|+++++++++++.....+.. ....+......... +|..+ .+..+||+-
T Consensus 141 i~v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~p~~~-~~~~~a~v~I 218 (509)
T PRK14327 141 IGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIEN-LPKVR-EGNIKAWVNI 218 (509)
T ss_pred EEEEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccccccccc-ccccc-CCCeEEEEEe
Confidence 999999999988 7888999999999999999999999977553332 22222111111222 35333 345677774
Q ss_pred -cCc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh-----------HhHHHhccccccccc
Q psy3863 208 -DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS-----------MSSRQCGRFQSTLID 257 (285)
Q Consensus 208 -~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~-----------~ll~~~~~~~~~~~~ 257 (285)
.|| | | |+.||+.||+|+++|+++++.+. +|+++|| +||++|.++
T Consensus 219 ~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~------ 292 (509)
T PRK14327 219 MYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI------ 292 (509)
T ss_pred cCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhC------
Confidence 899 5 7 89999999999999999987533 2566665 344444332
Q ss_pred ccceeEEEecccCCCCc
Q psy3863 258 GHRLCVTQLYLTNQDYP 274 (285)
Q Consensus 258 ~~~~~~~~~~~~n~~~~ 274 (285)
| .-.+|+.+.||..+
T Consensus 293 ~--i~~ir~~s~~P~~i 307 (509)
T PRK14327 293 D--IPRVRFTTSHPRDF 307 (509)
T ss_pred C--CceEEEeecCcccC
Confidence 1 12578888787554
No 4
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.8e-36 Score=297.24 Aligned_cols=211 Identities=25% Similarity=0.394 Sum_probs=164.0
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|.+.|.+.||+.++++++||+|||||||||++|++|+++.|+.+++.|+ .+|+++|
T Consensus 7 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~-----~~~~~~i 81 (445)
T PRK14340 7 RKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKR-----RRKGLLV 81 (445)
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhh-----cCCCCEE
Confidence 47999999999999999999999999999999999999999999999999999999999998877665 3468899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR 210 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc 210 (285)
+|+||+||..++++.+.+|+||+|+|++++.++++++.....+.............+.. +|..+ .+...+|+. .||
T Consensus 82 vv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~a~l~isrGC 159 (445)
T PRK14340 82 GVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAG-IEPVR-SGSISAFVPVMRGC 159 (445)
T ss_pred EEeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccc-ccccc-CCCcEEEEEeccCC
Confidence 99999999999999888999999999999999999997654332111110000111111 23222 234567654 899
Q ss_pred ---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh---------HhHHHhcccccccccccceeE
Q psy3863 211 ---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS---------MSSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 ---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~---------~ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |++||+.||+|+++|+++++.+. .|+++|+ +||++|.+ ++.+ ..
T Consensus 160 ~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~----~~~~---~r 232 (445)
T PRK14340 160 NNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSR----AAPE---MR 232 (445)
T ss_pred CCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhh----cCCC---cE
Confidence 5 7 89999999999999999988644 2777776 35555433 2323 68
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
+|+++.+|..+-+.
T Consensus 233 ir~~~~~p~~l~~e 246 (445)
T PRK14340 233 IRFTTSHPKDISES 246 (445)
T ss_pred EEEccCChhhcCHH
Confidence 99999999876544
No 5
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=290.15 Aligned_cols=210 Identities=25% Similarity=0.411 Sum_probs=161.3
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|.+.|.+.||+++++.++||++||||||||++|++|+++.|+.++++|+ .+|+++|
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~-----~~~~~~v 76 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKE-----KNPNLII 76 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHh-----hCCCCEE
Confidence 46999999999999999999999999999999999999999999999999999999999988877665 2467899
Q ss_pred EEEccchhh--hhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCC-eeeeeeccccccccccCCCccCCCCeeEEEE--
Q psy3863 133 GVLGCMAER--LKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ-TAINVLLSLDETYADITPKAVSTDGRRSIYV-- 207 (285)
Q Consensus 133 vVtGC~aq~--~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~-~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i-- 207 (285)
+|+||+||. .++++.+++|+||+|+|++++..++++++....+. ...... .........+|..+. +..++|+.
T Consensus 77 vv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~i~ 154 (439)
T PRK14328 77 GVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIW-EKEDGIVEGLPIDRK-SKVKAFVTIM 154 (439)
T ss_pred EEECchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeec-ccccccccccccccC-CCcEEEEEHH
Confidence 999999999 66888778999999999999999999998765332 222111 101111111232222 34567665
Q ss_pred cCc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhccccccccccc
Q psy3863 208 DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGH 259 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~ 259 (285)
.|| | | |++||++||+|+++|+++++.+. +|+++|| +||+.+.+ ++ |
T Consensus 155 rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~----~~-~- 228 (439)
T PRK14328 155 YGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE----ID-G- 228 (439)
T ss_pred hCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh----cC-C-
Confidence 899 5 7 89999999999999999987633 2567776 34444433 33 2
Q ss_pred ceeEEEecccCCCCccc
Q psy3863 260 RLCVTQLYLTNQDYPIP 276 (285)
Q Consensus 260 ~~~~~~~~~~n~~~~~~ 276 (285)
...+|+++.||..+-+
T Consensus 229 -~~~ir~~~~~P~~i~~ 244 (439)
T PRK14328 229 -LERIRFMTSHPKDLSD 244 (439)
T ss_pred -CcEEEEecCChhhcCH
Confidence 2568999999976544
No 6
>KOG2492|consensus
Probab=100.00 E-value=7.5e-36 Score=283.18 Aligned_cols=182 Identities=52% Similarity=0.903 Sum_probs=162.4
Q ss_pred cCceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy3863 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL 130 (285)
Q Consensus 51 ~g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~ 130 (285)
.|.|||++|||||||.+|.|....+|+..||.+++++++||||+++||+||+.||+++|+.|+.++.+|- +++..+ +.
T Consensus 71 ~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~-~~~~~r-pl 148 (552)
T KOG2492|consen 71 NGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKV-NRPTSR-PL 148 (552)
T ss_pred CCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhc-cCccCC-Cc
Confidence 4678999999999999999999999999999999999999999999999999999999999998888775 443233 46
Q ss_pred EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--c
Q psy3863 131 KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--D 208 (285)
Q Consensus 131 ~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~ 208 (285)
+|+|.||||++.+++++++-.-||+|.|++.+.+||.+++....|+..++.+.+.+++|.+..|.......++||+- .
T Consensus 149 ~v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~pvr~~~~s~tAFvSiMR 228 (552)
T KOG2492|consen 149 RVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQPVRVSSSSTTAFVSIMR 228 (552)
T ss_pred eEEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccceeeccCccchhHHHHHh
Confidence 99999999999999999988889999999999999999998888888888888888999887776545667888884 8
Q ss_pred Cc---c--c--cccCCcccccChHHHHhhhhcc
Q psy3863 209 GR---W--S--IYVDGRWRRKLGQQMVDGRSMS 234 (285)
Q Consensus 209 Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~ 234 (285)
|| | | ||.||+.||+|++.||++++.+
T Consensus 229 GCdNMCtyCiVpftrGreRsrpi~siv~ev~~L 261 (552)
T KOG2492|consen 229 GCDNMCTYCIVPFTRGRERSRPIESIVEEVKRL 261 (552)
T ss_pred ccccccceEEEeccCCcccCCchHHHHHHHHHH
Confidence 99 4 7 9999999999999999998753
No 7
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=1.5e-35 Score=290.01 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=160.3
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhC-CeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~-G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
++++.||||++|++|||.|.+.|.+. ||+++++.++||++||||||||++|++|+++.|..++++|+ .+|+++|
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~-----~~~~~~i 75 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKK-----KNPDLII 75 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHh-----hCCCcEE
Confidence 47899999999999999999999999 99999999999999999999999999999999988876665 2467899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCe-eeeeeccccccccccCCCccCCCCeeEEEE--cC
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQT-AINVLLSLDETYADITPKAVSTDGRRSIYV--DG 209 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~G 209 (285)
+|+|||||..++++.+..|+||+|+|++++..++++++....+.. ..... .......+.+|.....+..++++. +|
T Consensus 76 vv~GC~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~rG 154 (438)
T TIGR01574 76 GVCGCMASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDID-SDESEVAGYFADFRNEGIYKSFINIMIG 154 (438)
T ss_pred EEeCccccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeec-cccccccccccccccCCceeEEeehhcC
Confidence 999999999999988778999999999999999999986543322 11111 111111111243332234566664 89
Q ss_pred c---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchH-h-----------HhHHHhccccccccccc
Q psy3863 210 R---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGA-S-----------MSSRQCGRFQSTLIDGH 259 (285)
Q Consensus 210 c---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~-~-----------~ll~~~~~~~~~~~~~~ 259 (285)
| | | |++||+.||+|+++|+++++.+. +|+++| | +||++|.+ ++ |
T Consensus 155 C~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~----~~-~- 228 (438)
T TIGR01574 155 CNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST----ID-G- 228 (438)
T ss_pred CCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh----cC-C-
Confidence 9 5 7 89999999999999999987633 266777 4 34444332 22 2
Q ss_pred ceeEEEecccCCCCcccc
Q psy3863 260 RLCVTQLYLTNQDYPIPR 277 (285)
Q Consensus 260 ~~~~~~~~~~n~~~~~~~ 277 (285)
.=.+|+++.||..+-+.
T Consensus 229 -~~~ir~~~~~p~~l~~e 245 (438)
T TIGR01574 229 -IERIRFTSSHPLDFDDD 245 (438)
T ss_pred -ceEEEEecCCcccCCHH
Confidence 13578888899775443
No 8
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=290.74 Aligned_cols=212 Identities=32% Similarity=0.478 Sum_probs=162.6
Q ss_pred CceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcE
Q psy3863 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLK 131 (285)
Q Consensus 52 g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~ 131 (285)
..++++.||||++|++|||.|.++|...||++++++++||+|||||||||++|++|+++.|+.+++.|+ .+|+++
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~-----~~p~~~ 84 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK-----RNPNLV 84 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHH-----hCCCCE
Confidence 357999999999999999999999999999999999999999999999999999999999999887765 346789
Q ss_pred EEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeec-cccccccccCCCccCCCCeeEEEE--c
Q psy3863 132 IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLL-SLDETYADITPKAVSTDGRRSIYV--D 208 (285)
Q Consensus 132 IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~a~~i--~ 208 (285)
|+|+||+||..+++++++.+.||+|+|+++++.++++++....+........ .......+ +|+.. .+...+|+. .
T Consensus 85 ivv~GC~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~~~~~a~l~isr 162 (449)
T PRK14332 85 IGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDE-IEPRV-VNGIQAFVTIMR 162 (449)
T ss_pred EEEECcccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeeccccccccccc-ccccc-cCCceEEEEecC
Confidence 9999999999999987555569999999999999999987654432221110 00111112 23222 223456654 8
Q ss_pred Cc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHhH-------hHHHhcccccccccccceeE
Q psy3863 209 GR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGASM-------SSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 209 Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~~-------ll~~~~~~~~~~~~~~~~~~ 263 (285)
|| | | |+.||+.||+|+++|+++++.+. +|+++|+. ||+++.+ ++ | ...
T Consensus 163 GC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~----~~-~--~~~ 235 (449)
T PRK14332 163 GCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD----ET-T--IER 235 (449)
T ss_pred CcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhc----CC-C--cce
Confidence 99 5 7 89999999999999999998753 36777763 4444322 22 2 357
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
+|+++.||..+-+.
T Consensus 236 ir~~~~~p~~~~~e 249 (449)
T PRK14332 236 IRFTSPHPKDFPDH 249 (449)
T ss_pred EEEECCCcccCCHH
Confidence 99999999886543
No 9
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.2e-35 Score=286.16 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=157.8
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|.+.|.+.||+.++++++||+|||||||||++|++|+++.|..+++.|+ +|+++|+
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~------~~~~~iv 75 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKK------KRAFFII 75 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhh------CCCcEEE
Confidence 6899999999999999999999999999999999999999999999999999999999988876543 3578999
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccC---Ce-eeeee-ccccc---cccccCCCccCCCCeeEE
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN---QT-AINVL-LSLDE---TYADITPKAVSTDGRRSI 205 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~---~~-~~~~~-~~~~~---~~~~~~P~~~~~~~~~a~ 205 (285)
|+||+||..++++.+.+|+||+|+|++++..++++++....+ .. ..... ....+ +..+.+|.....+...+|
T Consensus 76 v~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (455)
T PRK14335 76 LMGCMAERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSF 155 (455)
T ss_pred EecccccchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEE
Confidence 999999999999988899999999999999999998754321 10 01000 00000 000111211112345666
Q ss_pred EE--cCc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh------------HhHHHhccccc
Q psy3863 206 YV--DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS------------MSSRQCGRFQS 253 (285)
Q Consensus 206 ~i--~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~------------~ll~~~~~~~~ 253 (285)
+. +|| | | |+.||+.||+|+++|+++++.+. +|+++|+ +||++|.+-..
T Consensus 156 i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~ 235 (455)
T PRK14335 156 IPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAE 235 (455)
T ss_pred EEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhc
Confidence 54 999 5 7 89999999999999999988643 2565553 45555421111
Q ss_pred ccccccceeEEEecccCCCCccc
Q psy3863 254 TLIDGHRLCVTQLYLTNQDYPIP 276 (285)
Q Consensus 254 ~~~~~~~~~~~~~~~~n~~~~~~ 276 (285)
.+.| .-.+|+.++||..+-+
T Consensus 236 -~~~~--i~~ir~~s~~p~~i~~ 255 (455)
T PRK14335 236 -VTDQ--IRWIRFMSSHPKDLSD 255 (455)
T ss_pred -ccCC--ceEEEEeecCcccCCH
Confidence 1222 3468889999877543
No 10
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5e-35 Score=287.08 Aligned_cols=211 Identities=24% Similarity=0.296 Sum_probs=161.7
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
.++++.||||++|++|||.|.+.|.+.||+.++++++||+|||||||||++|++|+++.|+++...|+ .+|+++|
T Consensus 7 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~-----~~p~~~v 81 (448)
T PRK14333 7 RSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKH-----KNPDLTL 81 (448)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHh-----cCCCCEE
Confidence 47999999999999999999999999999999999999999999999999999999999999875554 3478899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR 210 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc 210 (285)
+|+||+||..++++.+++|+||+|+|++++..++++++....+...... .......+ +|..+......+|+. .||
T Consensus 82 vv~Gc~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~a~i~i~~GC 158 (448)
T PRK14333 82 VVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQVVAT--EEIHILED-ITKPRRDSSITAWVNVIYGC 158 (448)
T ss_pred EEECccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCceeec--cccccccc-ccccccCCCeeEEEEhhcCC
Confidence 9999999999999888899999999999999999999866544322211 10111111 232222233456654 899
Q ss_pred ---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh-----------------HhHHHhccccccc
Q psy3863 211 ---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS-----------------MSSRQCGRFQSTL 255 (285)
Q Consensus 211 ---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~-----------------~ll~~~~~~~~~~ 255 (285)
| | |+.||+.||+|+++|+++++.+. .|+++|| +||+++.+ +
T Consensus 159 ~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~----~ 234 (448)
T PRK14333 159 NERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD----V 234 (448)
T ss_pred CCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh----c
Confidence 5 7 89999999999999999988643 2556664 23333222 2
Q ss_pred ccccceeEEEecccCCCCccccc
Q psy3863 256 IDGHRLCVTQLYLTNQDYPIPRK 278 (285)
Q Consensus 256 ~~~~~~~~~~~~~~n~~~~~~~~ 278 (285)
+ | .-.+|+++.||.++-+.-
T Consensus 235 ~-~--~~rir~~~~~p~~~~~el 254 (448)
T PRK14333 235 E-G--IERIRFATSHPRYFTERL 254 (448)
T ss_pred C-C--CeEEEECCCChhhhhHHH
Confidence 2 2 135899999998875543
No 11
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.5e-34 Score=285.24 Aligned_cols=213 Identities=37% Similarity=0.579 Sum_probs=160.8
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|++.|.+.||+.+++.++||+|||||||||++|++|+++.|..++..|+ .+|+++|
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~-----~~p~~~i 98 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKK-----KNPKLIV 98 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHh-----hCCCcEE
Confidence 35999999999999999999999999999999999999999999999999999999999988877665 3478899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR 210 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc 210 (285)
+|+||+||..++++++..|+||+|+|++.+..++++++....+.............+.+..|.........+++. .||
T Consensus 99 vvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrGC 178 (467)
T PRK14329 99 GVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNGVSAFVSIMRGC 178 (467)
T ss_pred EEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCCcEEEEEeccCc
Confidence 999999999999988888889999999999999999987554432221111111111121122211234556664 899
Q ss_pred ---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh---------------HhHHHhccccccccc
Q psy3863 211 ---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS---------------MSSRQCGRFQSTLID 257 (285)
Q Consensus 211 ---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~---------------~ll~~~~~~~~~~~~ 257 (285)
| | |++||+.||+|+++|+++++.+. +|+++|+ +||+++.+ ..+
T Consensus 179 p~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~---~~~- 254 (467)
T PRK14329 179 DNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAE---AVP- 254 (467)
T ss_pred ccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHh---cCC-
Confidence 6 7 89999999999999999987533 2445554 33443322 122
Q ss_pred ccceeEEEecccCCCCcccc
Q psy3863 258 GHRLCVTQLYLTNQDYPIPR 277 (285)
Q Consensus 258 ~~~~~~~~~~~~n~~~~~~~ 277 (285)
+ ..+|+++.||..+-+.
T Consensus 255 ~---~~ir~~~~~p~~l~~e 271 (467)
T PRK14329 255 D---MRIRFSTSHPKDMTDD 271 (467)
T ss_pred C---cEEEEecCCcccCCHH
Confidence 3 5789999998776443
No 12
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.1e-34 Score=282.63 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=159.3
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|.+.|.+.||+.++. ++||+|||||||||++|++|+++.|+++++.|+ .+|+++|
T Consensus 4 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~-----~~p~~~i 77 (446)
T PRK14337 4 RTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATK-----KNPDVFV 77 (446)
T ss_pred cEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHH-----hCCCCEE
Confidence 3699999999999999999999999999999985 789999999999999999999999999987765 3468899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeecccccccc--ccCCCccCCCCeeEEEE--c
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYA--DITPKAVSTDGRRSIYV--D 208 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~~~~~a~~i--~ 208 (285)
+|+||+||..++++.+++|+||+|+|++++..++++++....+........+....+. ..+|. .......+|+- .
T Consensus 78 vv~GC~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~v~i~r 156 (446)
T PRK14337 78 AVGGCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWG-NGTVPASAFVNIMQ 156 (446)
T ss_pred EEECCccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceeccccccccccccccccc-ccCCCcEEEEEecc
Confidence 9999999999999988999999999999999999998765432211100001000011 10111 11224556664 8
Q ss_pred Cc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh-----------HhHHHhccccccccccc
Q psy3863 209 GR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS-----------MSSRQCGRFQSTLIDGH 259 (285)
Q Consensus 209 Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~-----------~ll~~~~~~~~~~~~~~ 259 (285)
|| | | |++||++||+|+++|+++++.+. .|+++|| +||++|.+ +| |.
T Consensus 157 GC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~----~~-g~ 231 (446)
T PRK14337 157 GCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA----LP-GL 231 (446)
T ss_pred CCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh----cC-CC
Confidence 99 5 7 89999999999999999988643 2566664 35555433 33 32
Q ss_pred ceeEEEecccCCCCcccc
Q psy3863 260 RLCVTQLYLTNQDYPIPR 277 (285)
Q Consensus 260 ~~~~~~~~~~n~~~~~~~ 277 (285)
=.+|+++.+|..+-+.
T Consensus 232 --~~ir~~~~~p~~i~~e 247 (446)
T PRK14337 232 --ERLRFTTPHPKDIAPE 247 (446)
T ss_pred --cEEEEccCCcccCCHH
Confidence 2589999999877654
No 13
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.1e-34 Score=285.15 Aligned_cols=208 Identities=24% Similarity=0.411 Sum_probs=159.7
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
++++|.||||++|++|||.|+++|...||+.+++.++||+|||||||||++|++|+++.|+.++..|+ .+|+++|
T Consensus 14 ~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~-----~~p~~~V 88 (502)
T PRK14326 14 RTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKR-----ANPGMQI 88 (502)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHH-----hCCCCEE
Confidence 56999999999999999999999999999999999999999999999999999999999998887765 3468899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCee-eeeeccccccccccCCCccCCCCeeEEEE--cC
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTA-INVLLSLDETYADITPKAVSTDGRRSIYV--DG 209 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~G 209 (285)
+|+||+||..++++.+.+|+||+|+|++++..++++++....+... ....... ......+|.. ..+...+++. .|
T Consensus 89 vvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~p~~~p~~-~~~~~~a~v~isrG 166 (502)
T PRK14326 89 AVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESL-EQFPSTLPAR-RESAYAAWVSISVG 166 (502)
T ss_pred EEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCccccccccc-cccccccccc-cCCCceEEEEEccC
Confidence 9999999999999988889999999999999999999876543221 1111110 1111112322 2233456664 89
Q ss_pred c---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhcccccccccccce
Q psy3863 210 R---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRL 261 (285)
Q Consensus 210 c---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~ 261 (285)
| | | |+.||+.||+|+++||++++.+. +|+++|| +||+.+.++ +|.
T Consensus 167 Cp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i-----~~l-- 239 (502)
T PRK14326 167 CNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI-----DGL-- 239 (502)
T ss_pred CCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc-----CCc--
Confidence 9 5 7 89999999999999999988643 2556664 356665442 231
Q ss_pred eEEEecccCCCCc
Q psy3863 262 CVTQLYLTNQDYP 274 (285)
Q Consensus 262 ~~~~~~~~n~~~~ 274 (285)
-.+|+.+.+|-.+
T Consensus 240 ~~ir~~~~~p~~~ 252 (502)
T PRK14326 240 ERVRFTSPHPAEF 252 (502)
T ss_pred cEEEEeccChhhC
Confidence 2478888777654
No 14
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.1e-34 Score=280.55 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=152.0
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|.+.|.+.||+.++++++||+||||||+||++|++|+++.|+.++++|+ .+|+++|+
T Consensus 3 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~-----~~~~~~iv 77 (418)
T PRK14336 3 GYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKN-----KNPKLKIA 77 (418)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHh-----hCCCCEEE
Confidence 6999999999999999999999999999999999999999999999999999999999988877665 34678999
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc-
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR- 210 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc- 210 (285)
|+||+||.+++++.+.+|+||+|+|++++.++.+.+... . .|. .+..++|+. .||
T Consensus 78 v~GC~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~------------------~-~~~---~~~~~a~i~i~rGC~ 135 (418)
T PRK14336 78 LTGCLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF------------------I-LPL---KPPVSANVTIMQGCD 135 (418)
T ss_pred EECChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh------------------c-cCC---CCCeEEEEEeccCCC
Confidence 999999999999888899999999999865555443210 0 121 134456664 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhcccccccccccceeE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |++||+.||+|+++|+++++.+. +|+++|| +||+++.+ +| | ...
T Consensus 136 ~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~----~~-~--~~~ 208 (418)
T PRK14336 136 NFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD----IP-G--LLR 208 (418)
T ss_pred CCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh----cC-C--ccE
Confidence 5 7 89999999999999999987643 3677775 24444322 33 2 257
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
+|+++.+|..+-+.
T Consensus 209 ir~~~~~p~~i~~e 222 (418)
T PRK14336 209 IRFLTSHPKDISQK 222 (418)
T ss_pred EEEeccChhhcCHH
Confidence 89999999877544
No 15
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1e-33 Score=278.70 Aligned_cols=202 Identities=22% Similarity=0.306 Sum_probs=156.9
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|.+.|.+.||++++++++||+||||||+||++|++|+++.|..++++|+ .+|+++|
T Consensus 21 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~-----~~p~~~i 95 (459)
T PRK14338 21 RRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKR-----QRPDTRI 95 (459)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHh-----hCCCCEE
Confidence 56999999999999999999999999999999999999999999999999999999999988887766 3468899
Q ss_pred EEEccchhhhhHHH-HhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCcc-CCCCeeEEE-E-c
Q psy3863 133 GVLGCMAERLKKSL-LEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV-STDGRRSIY-V-D 208 (285)
Q Consensus 133 vVtGC~aq~~~~~l-~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~a~~-i-~ 208 (285)
+|+|||||..++++ .+.+|+||+|+|+++++++++++.... ... + . .. +|... ..+...+|+ | .
T Consensus 96 vv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~-----~~~--~--~--~~-~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 96 VLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPI-----YQL--D--E--PA-LPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred EEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhc-----ccc--c--c--cc-ccccccCCCceEEEEEccc
Confidence 99999999999997 578999999999999999999875321 000 1 1 11 12111 123445665 3 8
Q ss_pred Cc---c--c--cccCCcccccChHHHHhhhhcccC-----------CcchHhH----------hHHHhcccccccccccc
Q psy3863 209 GR---W--S--IYVDGRWRRKLGQQMVDGRSMSMD-----------DGGGASM----------SSRQCGRFQSTLIDGHR 260 (285)
Q Consensus 209 Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~~-----------d~g~~~~----------ll~~~~~~~~~~~~~~~ 260 (285)
|| | | |+.||+.||+|+++|+++++.+.+ |+++||. ||+++.+ ++ |
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~----~~-g-- 236 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE----IP-G-- 236 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh----cC-C--
Confidence 99 5 7 899999999999999999876331 4566653 4444322 22 2
Q ss_pred eeEEEecccCCCCccccc
Q psy3863 261 LCVTQLYLTNQDYPIPRK 278 (285)
Q Consensus 261 ~~~~~~~~~n~~~~~~~~ 278 (285)
.-.+|++++||-++-+..
T Consensus 237 i~~ir~~~~~p~~i~~el 254 (459)
T PRK14338 237 LERLRFLTSHPAWMTDRL 254 (459)
T ss_pred cceEEEEecChhhcCHHH
Confidence 135899999998775543
No 16
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.6e-33 Score=274.04 Aligned_cols=208 Identities=28% Similarity=0.392 Sum_probs=158.8
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|++.|.+.||+.++++++||++||||||||++|++|++++|+.+++.|+ .+|+++|+
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~-----~~p~~~iv 76 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKE-----KNPNALIG 76 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHH-----hCCCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999988876665 34788999
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeecccc--ccccccCCCccCCCCeeEEEE--cC
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLD--ETYADITPKAVSTDGRRSIYV--DG 209 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~--~~~~~~~P~~~~~~~~~a~~i--~G 209 (285)
|+||+||..++++++.+|+||+|+|+.++..++++++....+........... ....+.+|..+ .+...+|+. .|
T Consensus 77 v~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~-~~~~~a~v~i~rG 155 (437)
T PRK14331 77 VCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVR-DNKYCAYVTVMRG 155 (437)
T ss_pred EEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccc-CCCcEEEEEeccC
Confidence 99999999998888889999999999999999999987554322211111110 01111233222 234556664 89
Q ss_pred c---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh---------HhHHHhccccccccccccee
Q psy3863 210 R---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS---------MSSRQCGRFQSTLIDGHRLC 262 (285)
Q Consensus 210 c---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~---------~ll~~~~~~~~~~~~~~~~~ 262 (285)
| | | |++||+.||+|+++|+++++.+. +|+++|+ +||+++.+ ++ |. -
T Consensus 156 C~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~----~~-g~--~ 228 (437)
T PRK14331 156 CDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE----ID-GV--E 228 (437)
T ss_pred cCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc----CC-Cc--c
Confidence 9 5 7 89999999999999999987643 2566665 45555433 22 21 2
Q ss_pred EEEecccCCCCc
Q psy3863 263 VTQLYLTNQDYP 274 (285)
Q Consensus 263 ~~~~~~~n~~~~ 274 (285)
.+|+++.+|..+
T Consensus 229 ~i~~~~~~p~~l 240 (437)
T PRK14331 229 RIRFTTGHPRDL 240 (437)
T ss_pred EEEEeccCcccC
Confidence 488888777554
No 17
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=9.9e-33 Score=270.40 Aligned_cols=171 Identities=18% Similarity=0.276 Sum_probs=136.5
Q ss_pred CceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcE
Q psy3863 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLK 131 (285)
Q Consensus 52 g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~ 131 (285)
+.++++.||||++|++|||.|++.|.+.||+.++++++||+||||||+|+++|++|+++.|+++++ + +.+
T Consensus 7 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~--~--------~~~ 76 (440)
T PRK14862 7 APKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALA--E--------NGK 76 (440)
T ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHh--c--------CCC
Confidence 458999999999999999999999999999999999999999999999999999999999999852 1 124
Q ss_pred EEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCcc--CCCCeeEEEE--
Q psy3863 132 IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV--STDGRRSIYV-- 207 (285)
Q Consensus 132 IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~--~~~~~~a~~i-- 207 (285)
|+|+||||| .++++.+.+|+||+|+|++++.+++++++........ ...+..|..+ ..+...+++.
T Consensus 77 ivv~GC~a~-~~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~v~is 146 (440)
T PRK14862 77 VIVTGCLGA-KEDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHD---------PFVDLVPPQGVKLTPRHYAYLKIS 146 (440)
T ss_pred EEEECCccc-CHHHHHhhCCCceEEECCCCHHHHHHHHHHhhccccc---------cccccCcchhcccCCCcEEEEEec
Confidence 999999999 5788877789999999999999999998764321100 0011111111 1234556665
Q ss_pred cCc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh
Q psy3863 208 DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS 242 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~ 242 (285)
.|| | | |+.||+.||+|+++||++++.+. +|+++||
T Consensus 147 rGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg 199 (440)
T PRK14862 147 EGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYG 199 (440)
T ss_pred cCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhc
Confidence 899 6 7 89999999999999999988642 3777775
No 18
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.98 E-value=4.6e-32 Score=265.60 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=159.9
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+++++.||||++|++|||.|++.|.+.||+++++.++||++|||||||+++|++++++.|+++++.|+ .+|+++|
T Consensus 4 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~-----~~p~~~v 78 (444)
T PRK14325 4 KKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKE-----KNPDLII 78 (444)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHH-----hCCCCEE
Confidence 47999999999999999999999999999999999999999999999999999999999998887765 3468899
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhc-cCCeeeeeeccccccccccCCCccCCCCeeEEEE--cC
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY-SNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DG 209 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~G 209 (285)
+|+||+|+..++++.+.+|+||+|+|...+..++++++... .+............. .+.+|..+. ....+++. .|
T Consensus 79 vvgGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~d~~p~~~~-~~~~~~i~isrG 156 (444)
T PRK14325 79 GVGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEK-FDHLPEPRA-EGPSAFVSIMEG 156 (444)
T ss_pred EEECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeeccccccc-ccccccccC-CCceEEEEhhhC
Confidence 99999999999998878999999999999999999997653 332222111010011 112332222 23455554 89
Q ss_pred c---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchH-h-----------HhHHHhccccccccccc
Q psy3863 210 R---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGA-S-----------MSSRQCGRFQSTLIDGH 259 (285)
Q Consensus 210 c---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~-~-----------~ll~~~~~~~~~~~~~~ 259 (285)
| | | |++||+.+|+|+++|+++++.+. +|+++| + +||++|.+ ++ |
T Consensus 157 Cp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~----~~-~- 230 (444)
T PRK14325 157 CDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA----ID-G- 230 (444)
T ss_pred CCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh----cC-C-
Confidence 9 6 7 89999999999999999987643 255666 2 34444322 22 3
Q ss_pred ceeEEEecccCCCCccc
Q psy3863 260 RLCVTQLYLTNQDYPIP 276 (285)
Q Consensus 260 ~~~~~~~~~~n~~~~~~ 276 (285)
.-.+|+++.+|..+-+
T Consensus 231 -~~~ir~~~~~p~~~~~ 246 (444)
T PRK14325 231 -IERIRYTTSHPRDFTD 246 (444)
T ss_pred -ccEEEEccCCcccCCH
Confidence 1358999888876544
No 19
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.98 E-value=6.2e-32 Score=263.28 Aligned_cols=198 Identities=21% Similarity=0.284 Sum_probs=150.4
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|++.|.+.||+++++.++||++||||||||++|++|+++.|+++++. ++.|+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~----------~~~vv 70 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRN----------GKHVV 70 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhc----------CCCEE
Confidence 47899999999999999999999999999999999999999999999999999999999998621 34699
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc-
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR- 210 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc- 210 (285)
|+|||||..++++.+..| ++.++|++++.+++++++....... ... ........ .|..+ .+...+++. +||
T Consensus 71 v~GC~a~~~~e~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~-~~~~~~~i~isrGC~ 144 (420)
T TIGR01578 71 VAGCMPQAQKESVYDNGS-VASVLGVQAIDRLVEVVEETLKKKV-HGR--REAGTPLS-LPKPR-KNPLIEIIPINQGCL 144 (420)
T ss_pred EECCcCccChHHHHhhCC-ccEEEcCCCHHHHHHHHHHHhcCCc-ccc--cccccccc-ccccc-CCCcEEEEEEccCCC
Confidence 999999999999865444 5669999999999999876543211 100 00000111 12221 234556664 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh--------HhHHHhcccccccccccceeEEE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS--------MSSRQCGRFQSTLIDGHRLCVTQ 265 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~--------~ll~~~~~~~~~~~~~~~~~~~~ 265 (285)
| | |+.||+.||+|+++|+++++.+. +|+++|| +||+.|. .++.. +.+|
T Consensus 145 ~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~----~i~~~---~~ir 217 (420)
T TIGR01578 145 GNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT----EIPGE---FRLR 217 (420)
T ss_pred CCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH----hCCCC---cEEE
Confidence 5 7 89999999999999999987633 3777875 3444433 34443 7899
Q ss_pred ecccCCCCc
Q psy3863 266 LYLTNQDYP 274 (285)
Q Consensus 266 ~~~~n~~~~ 274 (285)
+++.||..+
T Consensus 218 ~~~~~p~~~ 226 (420)
T TIGR01578 218 VGMMNPKNV 226 (420)
T ss_pred EcCCCCCcc
Confidence 999999763
No 20
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.97 E-value=6.4e-32 Score=263.99 Aligned_cols=206 Identities=24% Similarity=0.386 Sum_probs=154.6
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|.+.|...||+.+++.++||+|+||||+|+++|++++++.++++...|| + ++++|+
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r-~-----~~~~vv 75 (434)
T PRK14330 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKR-K-----KNLIIG 75 (434)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcc-c-----CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999976554 1 378999
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc-
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR- 210 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc- 210 (285)
|+||+||..++++.+. ++|+|+|++.+..++++++....+............. ....|.. ..+...+++. .||
T Consensus 76 v~Gc~a~~~~ee~~~~--~~d~vvg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~v~i~rGC~ 151 (434)
T PRK14330 76 VAGCVAEKEREKLLKR--GADFVIGTRAVPKVTEAVKRALNGEKVALFEDKLDEI-TYELPRI-RSSKHHAWVTIIYGCN 151 (434)
T ss_pred EECccccCchhhHHhc--CCcEEEcCCCHHHHHHHHHHHhcCCceEeeccccccc-ccccccc-cCCCcEEEEEcccCCC
Confidence 9999999999997664 8999999999999999998765543221111000110 0111211 1234556664 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHhH----------hHHHhcccccccccccceeE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGASM----------SSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~~----------ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |+.||+.||+|+++|+++++.+. +++++||. ||+.+.+ ++ | .-.
T Consensus 152 ~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~----~~-~--~~~ 224 (434)
T PRK14330 152 RFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK----IE-G--IER 224 (434)
T ss_pred CCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh----cC-C--ceE
Confidence 5 7 89999999999999999987643 25677763 3333222 22 2 235
Q ss_pred EEecccCCCCccc
Q psy3863 264 TQLYLTNQDYPIP 276 (285)
Q Consensus 264 ~~~~~~n~~~~~~ 276 (285)
.|+++++|..+-+
T Consensus 225 ~~~~~~~p~~~~~ 237 (434)
T PRK14330 225 IWFLTSYPTDFSD 237 (434)
T ss_pred EEEecCChhhcCH
Confidence 6888888876544
No 21
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.97 E-value=2.2e-31 Score=260.81 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=149.3
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
++++.||||++|++|||.|.+.|...||+.++++++||++||||||||++|++|+++.|+++++.++ .++.+|+
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~------~~~~~v~ 75 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKA------QRPLVVG 75 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCc------CCCcEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999975432 1246799
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc-
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR- 210 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc- 210 (285)
|+|||||.++++.+...++||+|+|+.++.++++++..... ...... .+......|.. ..+..++++. .||
T Consensus 76 v~GC~a~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~-~~~~~~~~l~isrGC~ 149 (440)
T PRK14334 76 MMGCLAQLEEGQQMARKFGVDVLLGPGALTDIGKALEANER---FWGLQF--KDELHDHIPPP-PQGKLSAHLTIMRGCN 149 (440)
T ss_pred EEcchhccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhcc---cccccc--ccccccccccc-cCCCeEEEEEeccCCC
Confidence 99999999854334456789999999999999988754211 100000 01111112221 2234566664 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhcccccccccccceeE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |+.||+.+|+|+++|+++++... +|+++|| +|++.+.+ + | .-.
T Consensus 150 ~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~----~--~--i~~ 221 (440)
T PRK14334 150 HHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA----S--G--IPR 221 (440)
T ss_pred CCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh----c--C--CcE
Confidence 5 7 89999999999999999987532 2445554 34554322 2 2 124
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
+|+++.||..+-+.
T Consensus 222 ir~~~~~p~~i~~e 235 (440)
T PRK14334 222 VKFTTSHPMNFTDD 235 (440)
T ss_pred EEEccCCcccCCHH
Confidence 88988898776554
No 22
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.97 E-value=1.3e-31 Score=212.78 Aligned_cols=98 Identities=47% Similarity=0.755 Sum_probs=93.1
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
|+++.||||++|++|||.|.++|...||++++++++||+||||||+||++|++|+++.|+++++.++ |+++|+
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~-------~~~~iv 73 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKK-------PGAKIV 73 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcC-------CCCEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999986542 578999
Q ss_pred EEccchhhhhHHHHhhCCCccEEEC
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAG 158 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG 158 (285)
|+|||||.+++++.+..|+||+|+|
T Consensus 74 v~GC~aq~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 74 VTGCMAQRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred EEeCccccChHHHHhhCCCeEEEeC
Confidence 9999999999999999999999998
No 23
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.97 E-value=7.1e-31 Score=256.24 Aligned_cols=204 Identities=19% Similarity=0.283 Sum_probs=151.3
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
+++|.||||++|++|||.|++.|.+.||+++++.++||+|||||||||++|++|+++.|+++++. +++|+
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~----------~~~vv 70 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADA----------GKKVI 70 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhc----------CCCEE
Confidence 47999999999999999999999999999999999999999999999999999999999998621 45899
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc-
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR- 210 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc- 210 (285)
|+||+||..++++.+.+|+||+|+|+..+.++.+.++......... . .........|.....+...+++. .||
T Consensus 71 vgGc~a~~~pee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~srGC~ 146 (430)
T TIGR01125 71 VTGCLVQRYKEELKEEIPEVHAITGSGDVENILNAIESREPGDKIP-F---KSEIEMGEVPRILLTPRHYAYLKVAEGCN 146 (430)
T ss_pred EECCccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCcc-c---ccccccccccccccCCCeEEEEEEccCCC
Confidence 9999999999998888999999999988888887776532211100 0 00000000121112233455554 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhcccccccccccceeE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |+.||+.||+|+++|+++++.+. +|+++|| +||++|.+ ++ | .-.
T Consensus 147 ~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~----~~-~--i~~ 219 (430)
T TIGR01125 147 RRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK----VG-G--IYW 219 (430)
T ss_pred CCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh----cC-C--ccE
Confidence 5 7 78999999999999999987642 3777775 24444322 22 1 235
Q ss_pred EEecccCCCCccccc
Q psy3863 264 TQLYLTNQDYPIPRK 278 (285)
Q Consensus 264 ~~~~~~n~~~~~~~~ 278 (285)
+|+.+++|..+-+..
T Consensus 220 ~r~~~~~p~~~~~el 234 (430)
T TIGR01125 220 IRMHYLYPDELTDDV 234 (430)
T ss_pred EEEccCCcccCCHHH
Confidence 788889988765443
No 24
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.97 E-value=1e-30 Score=254.88 Aligned_cols=205 Identities=29% Similarity=0.467 Sum_probs=155.8
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EE
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KI 132 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~I 132 (285)
++++.||||++|++|||.|.+.|.+.||+++++.++||+|+||||||++.|++++++.++++++.+ ++. +|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~--------~~~~~v 72 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLK--------KKNAKI 72 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhC--------cCCCEE
Confidence 479999999999999999999999999999999999999999999999999999999999997432 233 89
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR 210 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc 210 (285)
+|+||+||..++++.++.|++|+|+|+.++..++++++....+..... .........+|..+..+...+++. .||
T Consensus 73 vvgGc~a~~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~i~~srGC 149 (429)
T TIGR00089 73 VVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAEQEKQVVF---NISKDVYEELPRPRSFGKTRAFLKIQEGC 149 (429)
T ss_pred EEECcccccCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHhcCCceec---cccccchhcccccccCCCeEEEEEHHhCc
Confidence 999999999999988889999999999999999999976542211111 100101111343333334455554 899
Q ss_pred ---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhccccccccccccee
Q psy3863 211 ---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRLC 262 (285)
Q Consensus 211 ---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~~ 262 (285)
| | |+.||+.||+|+++|+++++.+. +|+++|| +||+++.+ ++ | ..
T Consensus 150 ~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~----~~-g--~~ 222 (429)
T TIGR00089 150 DKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK----ID-G--IE 222 (429)
T ss_pred CCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc----CC-C--CC
Confidence 5 7 89999999999999999987643 2677774 34444322 22 2 25
Q ss_pred EEEecccCCCCccc
Q psy3863 263 VTQLYLTNQDYPIP 276 (285)
Q Consensus 263 ~~~~~~~n~~~~~~ 276 (285)
.+|+++.||..+-+
T Consensus 223 ~i~~~~~~p~~i~~ 236 (429)
T TIGR00089 223 RIRFGSSHPDDVTD 236 (429)
T ss_pred EEEECCCChhhcCH
Confidence 68999888876533
No 25
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.97 E-value=5.2e-31 Score=256.92 Aligned_cols=194 Identities=19% Similarity=0.256 Sum_probs=145.7
Q ss_pred cCcchhHHHHHHHh-hCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhh
Q psy3863 64 MNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERL 142 (285)
Q Consensus 64 ~N~~dsell~~lL~-~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~ 142 (285)
||++|||.|.+.|. ..||+.++++++||+|||||||||++|++|+++.|+++++.++ |+++|+|||||||+.
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~-------~~~~ivv~GC~a~~~ 73 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKK-------EGAKIGVCGCTASHL 73 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhC-------CCCeEEEECCccccC
Confidence 69999999999998 6899999999999999999999999999999999999975332 467899999999999
Q ss_pred hHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCccCCCCeeEEEE--cCc---c--c--c
Q psy3863 143 KKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV--DGR---W--S--I 213 (285)
Q Consensus 143 ~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~a~~i--~Gc---c--C--~ 213 (285)
++++.+++|+||+|+|++++++++++++.... ...... . .+.... .+.. ..+..++++. .|| | | |
T Consensus 74 ~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~--~~~~~~-~-~~~~~~-~~~~-~~~~~~a~i~isrGC~~~CsFC~ip 147 (420)
T PRK14339 74 GEEIIKRAPYVDFVLGARNVSKISQVIHTPKA--VEVDID-Y-DESTYA-FADF-RKSPYKSLVNISIGCDKKCTYCIVP 147 (420)
T ss_pred CHHHHhhCCCCcEEECCCCHHHHHHHHHhhcc--cceecc-c-cccccc-cccc-cCCCeEEEEEecCCCCCCCCcCCcc
Confidence 99998899999999999999999999865311 111110 0 010001 1111 1234567765 899 5 7 8
Q ss_pred ccCCcccccChHHHHhhhhccc-----------CCcchHh-------------HhHHHhcccccccccccceeEEEeccc
Q psy3863 214 YVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS-------------MSSRQCGRFQSTLIDGHRLCVTQLYLT 269 (285)
Q Consensus 214 ~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~-------------~ll~~~~~~~~~~~~~~~~~~~~~~~~ 269 (285)
++||+.+|+|+++|+++++.+. +|+++|| +||+++.+ ++ | .-.+|++++
T Consensus 148 ~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~----~~-g--~~~ir~~s~ 220 (420)
T PRK14339 148 HTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE----IE-G--LERIRFTSP 220 (420)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc----CC-C--ccEEEECCC
Confidence 9999999999999999987543 2777775 33333322 22 3 235899999
Q ss_pred CCCCcccc
Q psy3863 270 NQDYPIPR 277 (285)
Q Consensus 270 n~~~~~~~ 277 (285)
||..+=+.
T Consensus 221 ~p~~~~~e 228 (420)
T PRK14339 221 HPLHMDDK 228 (420)
T ss_pred ChhhcCHH
Confidence 99765443
No 26
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.97 E-value=6.3e-30 Score=248.25 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=151.9
Q ss_pred EEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEc
Q psy3863 57 FEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG 136 (285)
Q Consensus 57 i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtG 136 (285)
+.||||++|++|||.|.+.|.+.||+.+++.++||+|+||||||+..|++++++.++++++ .+|+++|+|+|
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~--------~~p~~~vvvgG 72 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARR--------QNPTAKIIVTG 72 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHh--------hCCCcEEEEEC
Confidence 4799999999999999999999999999999999999999999999999999999999863 13578999999
Q ss_pred cchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCCeeeeeeccccccccccCCCcc---CCCCeeEEEE--cCc-
Q psy3863 137 CMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAV---STDGRRSIYV--DGR- 210 (285)
Q Consensus 137 C~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~~~~~a~~i--~Gc- 210 (285)
|+|+..++++. +.|+||+|+|.+....++++++....+............ ....|... ..+...+++. .||
T Consensus 73 c~a~~~~ee~~-~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~i~isrGCp 149 (414)
T TIGR01579 73 CYAQSNPKELA-DLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSR--EKGVPEYEEVAFEGHTRAFIKVQDGCN 149 (414)
T ss_pred CccccCHHHHh-cCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccc--ccccccccccccCCCeEEEEEeccCcC
Confidence 99999999975 589999999999999999999754332211100000000 00112111 1234556654 899
Q ss_pred --c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhcccccccccccceeE
Q psy3863 211 --W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRFQSTLIDGHRLCV 263 (285)
Q Consensus 211 --c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~~~~~~~~~~~~~ 263 (285)
| | |+.||+.||+|+++|+++++.+. +|+++|+ +||+++.+ +|. ...
T Consensus 150 ~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~----~~~---~~~ 222 (414)
T TIGR01579 150 FFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ----IPG---IKR 222 (414)
T ss_pred CCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc----CCC---CcE
Confidence 5 7 89999999999999999987643 2666776 34444322 332 368
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
+|+++++|..+-+.
T Consensus 223 ir~~~~~p~~~~~e 236 (414)
T TIGR01579 223 IRLSSIDPEDIDEE 236 (414)
T ss_pred EEEeCCChhhCCHH
Confidence 99999998775443
No 27
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2e-18 Score=168.72 Aligned_cols=97 Identities=30% Similarity=0.615 Sum_probs=82.1
Q ss_pred CCCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce------eeEEEeccccC---cchhHHHH
Q psy3863 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK------VYFEVFGCQMN---VNDTEVVW 73 (285)
Q Consensus 6 ~~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k------v~i~TyGC~~N---~~dsell~ 73 (285)
..++++|||+||+|||++|||||||++||+++|||+++|++|++. .|+| +++..||-++. .+++++|+
T Consensus 140 ~~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 140 REGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred cCCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 567899999999999999999999999999999999999999987 4766 56789999885 78999999
Q ss_pred HHHhhCCeee--cCCCCCCcEEEEeccccccchHHHHHHHHHH
Q psy3863 74 SILKSSGYSK--VNHPREADVILVMTCAIRENAEGKVWDRLRF 114 (285)
Q Consensus 74 ~lL~~~G~~~--v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~ 114 (285)
.+.+..|..+ ....++.++ .+.+..++..
T Consensus 220 ~l~~I~G~~riR~~~~~P~~~------------~d~lI~~~~~ 250 (437)
T COG0621 220 ELSKIPGIERIRFGSSHPLEF------------TDDLIEAIAE 250 (437)
T ss_pred HHhcCCCceEEEEecCCchhc------------CHHHHHHHhc
Confidence 9999888554 466666666 5667776654
No 28
>KOG2492|consensus
Probab=99.41 E-value=4.7e-14 Score=135.16 Aligned_cols=50 Identities=72% Similarity=1.285 Sum_probs=48.1
Q ss_pred CCccCCCCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 1 ~~~~~~~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
||++.+.+.+.|||.|++||||.||||||||+||+.||||+++|++|++.
T Consensus 211 ~pvr~~~~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~ 260 (552)
T KOG2492|consen 211 QPVRVSSSSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKR 260 (552)
T ss_pred ceeeccCccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999977
No 29
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.34 E-value=1.5e-12 Score=128.55 Aligned_cols=73 Identities=38% Similarity=0.763 Sum_probs=57.5
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEeccccCcchhHHHHHHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQMNVNDTEVVWSILKS 78 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~N~~dsell~~lL~~ 78 (285)
.+.+|||+||+|||++||||++|++||++||||+++|++|++. .|.+ +++ ..||-+ ...+.+++.++++.
T Consensus 152 ~~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~ 230 (449)
T PRK14332 152 NGIQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDE 230 (449)
T ss_pred CCceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcC
Confidence 3468999999999999999999999999999999999999987 3544 433 456543 23577888877766
Q ss_pred CCe
Q psy3863 79 SGY 81 (285)
Q Consensus 79 ~G~ 81 (285)
.|+
T Consensus 231 ~~~ 233 (449)
T PRK14332 231 TTI 233 (449)
T ss_pred CCc
Confidence 564
No 30
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.34 E-value=2e-12 Score=126.44 Aligned_cols=75 Identities=37% Similarity=0.704 Sum_probs=56.9
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-ee-----EEEeccccC--cchhHHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VY-----FEVFGCQMN--VNDTEVVWSI 75 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~-----i~TyGC~~N--~~dsell~~l 75 (285)
..+++|||+||+|||++||||++|++||++||||+++|++|++. .|.+ +. +..||-+.. ....+++..+
T Consensus 121 ~~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 200 (418)
T PRK14336 121 KPPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSAL 200 (418)
T ss_pred CCCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHH
Confidence 35689999999999999999999999999999999999999877 3543 33 344664432 2456666666
Q ss_pred HhhCCe
Q psy3863 76 LKSSGY 81 (285)
Q Consensus 76 L~~~G~ 81 (285)
.+..|.
T Consensus 201 ~~~~~~ 206 (418)
T PRK14336 201 HDIPGL 206 (418)
T ss_pred HhcCCc
Confidence 554453
No 31
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.34 E-value=2.4e-12 Score=125.93 Aligned_cols=75 Identities=35% Similarity=0.669 Sum_probs=57.8
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-ee-----EEEeccccC-----cchhHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VY-----FEVFGCQMN-----VNDTEVV 72 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~-----i~TyGC~~N-----~~dsell 72 (285)
.++++|||+||+||+++||||++|++||+.+|||+++|++|++. .|.+ ++ +..||.++. ....+++
T Consensus 124 ~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll 203 (420)
T PRK14339 124 KSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLL 203 (420)
T ss_pred CCCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHH
Confidence 45679999999999999999999999999999999999999976 3543 43 456776542 2356666
Q ss_pred HHHHhhCCe
Q psy3863 73 WSILKSSGY 81 (285)
Q Consensus 73 ~~lL~~~G~ 81 (285)
..+.+..|.
T Consensus 204 ~~l~~~~g~ 212 (420)
T PRK14339 204 DKLSEIEGL 212 (420)
T ss_pred HHHhcCCCc
Confidence 665544564
No 32
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.32 E-value=3.9e-12 Score=125.33 Aligned_cols=74 Identities=39% Similarity=0.793 Sum_probs=57.7
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc---CcchhHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM---NVNDTEVVWSI 75 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~---N~~dsell~~l 75 (285)
.+.+|||+||+||+++||||++|++||++||||+++|++|++. .|.+ +.+ ..||.+. +....+++..+
T Consensus 146 ~~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l 225 (446)
T PRK14337 146 VPASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKV 225 (446)
T ss_pred CCcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHH
Confidence 4578999999999999999999999999999999999999987 3543 443 4567654 23566677666
Q ss_pred HhhCCe
Q psy3863 76 LKSSGY 81 (285)
Q Consensus 76 L~~~G~ 81 (285)
.+..|.
T Consensus 226 ~~~~g~ 231 (446)
T PRK14337 226 AALPGL 231 (446)
T ss_pred HhcCCC
Confidence 654554
No 33
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.31 E-value=3.5e-12 Score=127.66 Aligned_cols=71 Identities=42% Similarity=0.782 Sum_probs=54.4
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-ee-----EEEeccccC---cchhHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VY-----FEVFGCQMN---VNDTEVVWS 74 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~-----i~TyGC~~N---~~dsell~~ 74 (285)
.++.+|||+||+||+++||||++|++||++||||+++|++|++. .|.+ +. +..||-++. ....+++..
T Consensus 209 ~~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~ 288 (509)
T PRK14327 209 EGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDE 288 (509)
T ss_pred CCCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHH
Confidence 45689999999999999999999999999999999999999977 3543 33 356665432 124556555
Q ss_pred HHh
Q psy3863 75 ILK 77 (285)
Q Consensus 75 lL~ 77 (285)
+.+
T Consensus 289 I~~ 291 (509)
T PRK14327 289 IRK 291 (509)
T ss_pred HHh
Confidence 543
No 34
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.26 E-value=1e-11 Score=122.50 Aligned_cols=70 Identities=44% Similarity=0.863 Sum_probs=53.1
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc-CcchhHHHHHHHh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM-NVNDTEVVWSILK 77 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~-N~~dsell~~lL~ 77 (285)
+..+|||+||+||+++||||++|++||++||||+++|++|++. .|.+ +.+ ..||-+. .....++|..+.+
T Consensus 147 ~~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~ 226 (445)
T PRK14340 147 GSISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSR 226 (445)
T ss_pred CCcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhh
Confidence 4578999999999999999999999999999999999999977 3543 433 4555332 1235566666544
No 35
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.25 E-value=1.1e-11 Score=123.97 Aligned_cols=74 Identities=35% Similarity=0.605 Sum_probs=55.0
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc---Cce-e-----eEEEeccccC--cchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL---SDK-V-----YFEVFGCQMN--VNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~---g~k-v-----~i~TyGC~~N--~~dsell~~lL 76 (285)
.+.++||+||+|||++||||++|++||+.||||+++|++|++.. |.+ + ++..||.+.+ ....++++.+.
T Consensus 155 ~~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~ 234 (502)
T PRK14326 155 SAYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACG 234 (502)
T ss_pred CCceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999999999763 433 4 3456776543 13445555444
Q ss_pred hhCCe
Q psy3863 77 KSSGY 81 (285)
Q Consensus 77 ~~~G~ 81 (285)
...|.
T Consensus 235 ~i~~l 239 (502)
T PRK14326 235 EIDGL 239 (502)
T ss_pred hcCCc
Confidence 33443
No 36
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.25 E-value=8.6e-12 Score=122.59 Aligned_cols=74 Identities=39% Similarity=0.791 Sum_probs=56.4
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-ee-----EEEecccc--CcchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VY-----FEVFGCQM--NVNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~-----i~TyGC~~--N~~dsell~~lL 76 (285)
++.++||+||+||+++|+||++|++||+.||||+++|++|++. .|.+ +. +..||-++ +....+++..+.
T Consensus 145 ~~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 224 (439)
T PRK14328 145 SKVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVN 224 (439)
T ss_pred CCcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHH
Confidence 5688999999999999999999999999999999999999876 3543 33 34566443 234566666655
Q ss_pred hhCCe
Q psy3863 77 KSSGY 81 (285)
Q Consensus 77 ~~~G~ 81 (285)
+..|+
T Consensus 225 ~~~~~ 229 (439)
T PRK14328 225 EIDGL 229 (439)
T ss_pred hcCCC
Confidence 44454
No 37
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.25 E-value=1.1e-11 Score=121.75 Aligned_cols=74 Identities=42% Similarity=0.828 Sum_probs=55.8
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc---Cce-eeE-----EEeccccC--cchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL---SDK-VYF-----EVFGCQMN--VNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~---g~k-v~i-----~TyGC~~N--~~dsell~~lL 76 (285)
++.++||+||+||+++|+||++|++||+.||||+++|++|++.. |.+ +.+ ..||-+++ ....+++..+.
T Consensus 138 ~~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~ 217 (434)
T PRK14330 138 SKHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS 217 (434)
T ss_pred CCcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHH
Confidence 45799999999999999999999999999999999999998773 543 433 45765443 23455555554
Q ss_pred hhCCe
Q psy3863 77 KSSGY 81 (285)
Q Consensus 77 ~~~G~ 81 (285)
+..|.
T Consensus 218 ~~~~~ 222 (434)
T PRK14330 218 KIEGI 222 (434)
T ss_pred hcCCc
Confidence 44453
No 38
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.24 E-value=1e-11 Score=121.54 Aligned_cols=74 Identities=24% Similarity=0.536 Sum_probs=58.1
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEeccccCcchhHHHHHHHh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~N~~dsell~~lL~ 77 (285)
.++.++||+||+||+++||||++|++||++||||+++|++|++. .|.+ +.+ ..||-+.+....++++.+.+
T Consensus 130 ~~~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~ 209 (420)
T TIGR01578 130 KNPLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE 209 (420)
T ss_pred CCCcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999876 3544 443 35776655556777766554
Q ss_pred hCC
Q psy3863 78 SSG 80 (285)
Q Consensus 78 ~~G 80 (285)
..+
T Consensus 210 i~~ 212 (420)
T TIGR01578 210 IPG 212 (420)
T ss_pred CCC
Confidence 433
No 39
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.23 E-value=2e-11 Score=121.10 Aligned_cols=72 Identities=53% Similarity=0.824 Sum_probs=54.5
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-ee-----EEEeccccC-------cchhH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VY-----FEVFGCQMN-------VNDTE 70 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~-----i~TyGC~~N-------~~dse 70 (285)
..+.+|||+||+|||++||||++|++||++||||+++|++|++. .|.+ +. +..||.+.. ....+
T Consensus 165 ~~~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 165 GNGVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred CCCcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 34678999999999999999999999999999999999999876 3544 33 355665422 23556
Q ss_pred HHHHHHhh
Q psy3863 71 VVWSILKS 78 (285)
Q Consensus 71 ll~~lL~~ 78 (285)
++..+.+.
T Consensus 245 Ll~~l~~~ 252 (467)
T PRK14329 245 LLEMVAEA 252 (467)
T ss_pred HHHHHHhc
Confidence 66655443
No 40
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.22 E-value=2.2e-11 Score=119.69 Aligned_cols=74 Identities=34% Similarity=0.749 Sum_probs=56.6
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEe-ccccC---cchhHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVF-GCQMN---VNDTEVVWS 74 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~Ty-GC~~N---~~dsell~~ 74 (285)
+..++||+||+||+++||||++|++||+.||||+++|++|++. .|.+ +.+ ..| |-+.+ ....+++..
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~ 222 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRE 222 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHH
Confidence 4579999999999999999999999999999999999999876 3543 444 345 54432 245677777
Q ss_pred HHhhCCe
Q psy3863 75 ILKSSGY 81 (285)
Q Consensus 75 lL~~~G~ 81 (285)
+.+..|.
T Consensus 223 l~~~~~~ 229 (438)
T TIGR01574 223 LSTIDGI 229 (438)
T ss_pred HHhcCCc
Confidence 6655564
No 41
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.21 E-value=2.2e-11 Score=119.92 Aligned_cols=57 Identities=32% Similarity=0.691 Sum_probs=47.5
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM 64 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~ 64 (285)
.+.+|||+||+|||++||||++|++||++||||+++|++|++. .|.+ +.+ ..||.+.
T Consensus 137 ~~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~ 202 (440)
T PRK14862 137 PRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDV 202 (440)
T ss_pred CCcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhcccc
Confidence 4578999999999999999999999999999999999999887 3544 333 3477553
No 42
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.19 E-value=4.1e-11 Score=118.11 Aligned_cols=74 Identities=32% Similarity=0.705 Sum_probs=56.6
Q ss_pred CeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc---Cce-eeE-----EEeccccC---------cchhH
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL---SDK-VYF-----EVFGCQMN---------VNDTE 70 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~---g~k-v~i-----~TyGC~~N---------~~dse 70 (285)
..+|||+|++||+++||||++|++||+.+|||+++|++|++.. |.+ +.+ ..||-++. ....+
T Consensus 147 ~~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~ 226 (448)
T PRK14333 147 SITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTD 226 (448)
T ss_pred CeeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHH
Confidence 4689999999999999999999999999999999999998763 543 433 45664432 14566
Q ss_pred HHHHHHhhCCee
Q psy3863 71 VVWSILKSSGYS 82 (285)
Q Consensus 71 ll~~lL~~~G~~ 82 (285)
++..+.+..|..
T Consensus 227 Ll~~i~~~~~~~ 238 (448)
T PRK14333 227 LLYYIHDVEGIE 238 (448)
T ss_pred HHHHHHhcCCCe
Confidence 776666655643
No 43
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.19 E-value=4.4e-11 Score=117.55 Aligned_cols=74 Identities=42% Similarity=0.793 Sum_probs=56.6
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEeccccC-cchhHHHHHHHh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQMN-VNDTEVVWSILK 77 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~N-~~dsell~~lL~ 77 (285)
+..++||+|++||+++||||++|++||++||||+++|++|++. .|.+ +++ ..||-+.+ ....+++..+.+
T Consensus 144 ~~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~ 223 (437)
T PRK14331 144 NKYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE 223 (437)
T ss_pred CCcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999876 3533 444 34554433 345667776665
Q ss_pred hCCe
Q psy3863 78 SSGY 81 (285)
Q Consensus 78 ~~G~ 81 (285)
..|.
T Consensus 224 ~~g~ 227 (437)
T PRK14331 224 IDGV 227 (437)
T ss_pred CCCc
Confidence 5553
No 44
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.18 E-value=4.3e-11 Score=118.30 Aligned_cols=69 Identities=36% Similarity=0.768 Sum_probs=53.6
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc---C-cchhHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM---N-VNDTEVVWS 74 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~---N-~~dsell~~ 74 (285)
+++++||+||+|||++||||++|++||+.+|||+++|++|++. .|.+ +.+ ..||-+- + ....++|.+
T Consensus 150 ~~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~ 229 (455)
T PRK14335 150 GSFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRH 229 (455)
T ss_pred CCceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHH
Confidence 4678999999999999999999999999999999999999877 3543 433 3454311 1 246778877
Q ss_pred HH
Q psy3863 75 IL 76 (285)
Q Consensus 75 lL 76 (285)
+.
T Consensus 230 l~ 231 (455)
T PRK14335 230 IV 231 (455)
T ss_pred HH
Confidence 64
No 45
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.18 E-value=5.2e-11 Score=115.98 Aligned_cols=73 Identities=34% Similarity=0.754 Sum_probs=55.9
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc--CcchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM--NVNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~--N~~dsell~~lL 76 (285)
+..++||+|++||+++||||++|++||++||||+++|++|++. .|.+ +.+ ..||-+. .....++++.+.
T Consensus 136 ~~~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 136 GHTRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred CCeEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHh
Confidence 4578999999999999999999999999999999999999877 3543 443 4566543 234566666655
Q ss_pred hhCC
Q psy3863 77 KSSG 80 (285)
Q Consensus 77 ~~~G 80 (285)
+..|
T Consensus 216 ~~~~ 219 (414)
T TIGR01579 216 QIPG 219 (414)
T ss_pred cCCC
Confidence 4444
No 46
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.16 E-value=7.3e-11 Score=115.46 Aligned_cols=73 Identities=42% Similarity=0.862 Sum_probs=56.1
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc---Cce-eeE-----EEeccccC--cchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL---SDK-VYF-----EVFGCQMN--VNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~---g~k-v~i-----~TyGC~~N--~~dsell~~lL 76 (285)
++.++||++|+||+++||||++|+++|+.||||+++|++|++.. |.+ +++ ..||-+++ ....++|.++.
T Consensus 137 ~~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 216 (429)
T TIGR00089 137 GKTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELS 216 (429)
T ss_pred CCeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999998873 543 443 34565433 34667776655
Q ss_pred hhCC
Q psy3863 77 KSSG 80 (285)
Q Consensus 77 ~~~G 80 (285)
+..|
T Consensus 217 ~~~g 220 (429)
T TIGR00089 217 KIDG 220 (429)
T ss_pred cCCC
Confidence 4434
No 47
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.14 E-value=5.1e-11 Score=117.89 Aligned_cols=75 Identities=32% Similarity=0.744 Sum_probs=56.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecccc--CcchhHHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQM--NVNDTEVVWSI 75 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~--N~~dsell~~l 75 (285)
.++.++|++||+|||++||||++|++||+.||+|+++|+++++. .|.+ +.+ ..||.+. +....++++.+
T Consensus 152 ~~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 152 HPPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred CCceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999876 3543 433 3466543 22355666665
Q ss_pred HhhCCe
Q psy3863 76 LKSSGY 81 (285)
Q Consensus 76 L~~~G~ 81 (285)
.+..|+
T Consensus 232 ~~~~gi 237 (459)
T PRK14338 232 HEIPGL 237 (459)
T ss_pred HhcCCc
Confidence 554454
No 48
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.09 E-value=1.8e-10 Score=113.23 Aligned_cols=74 Identities=36% Similarity=0.691 Sum_probs=54.0
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEecc-cc---CcchhHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGC-QM---NVNDTEVVWS 74 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC-~~---N~~dsell~~ 74 (285)
.+.++|++||+||+++||||++|++||+.+|||+++|++|++. .|.+ +++ ..|+- +. .....+++..
T Consensus 145 ~~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~ 224 (444)
T PRK14325 145 EGPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRL 224 (444)
T ss_pred CCceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHH
Confidence 4578999999999999999999999999999999999999876 3543 443 23421 11 1245566666
Q ss_pred HHhhCCe
Q psy3863 75 ILKSSGY 81 (285)
Q Consensus 75 lL~~~G~ 81 (285)
+.+..|.
T Consensus 225 l~~~~~~ 231 (444)
T PRK14325 225 VAAIDGI 231 (444)
T ss_pred HHhcCCc
Confidence 5554453
No 49
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.07 E-value=4.5e-10 Score=110.07 Aligned_cols=71 Identities=28% Similarity=0.616 Sum_probs=53.7
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc---Cce-eeEE-----Eecccc-C-cchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL---SDK-VYFE-----VFGCQM-N-VNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~---g~k-v~i~-----TyGC~~-N-~~dsell~~lL 76 (285)
++.++||+||+||+++||||++|.++|++||||+++|++|++.. |.+ +.+. .||-+. + ....++++.+.
T Consensus 133 ~~~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~ 212 (430)
T TIGR01125 133 PRHYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELG 212 (430)
T ss_pred CCeEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHH
Confidence 45789999999999999999999999999999999999998773 443 4432 366443 1 34566666654
Q ss_pred hh
Q psy3863 77 KS 78 (285)
Q Consensus 77 ~~ 78 (285)
+.
T Consensus 213 ~~ 214 (430)
T TIGR01125 213 KV 214 (430)
T ss_pred hc
Confidence 43
No 50
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.97 E-value=1.6e-09 Score=106.64 Aligned_cols=74 Identities=38% Similarity=0.638 Sum_probs=55.1
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeE-----EEeccccC--cchhHHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYF-----EVFGCQMN--VNDTEVVWSI 75 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i-----~TyGC~~N--~~dsell~~l 75 (285)
.++.++||+||+||+++|+||.+|++||+.+|+++++|++|++. .|.+ +++ ..||-+.. ....++++.+
T Consensus 135 ~~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l 214 (440)
T PRK14334 135 QGKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLV 214 (440)
T ss_pred CCCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999876 3543 443 34764432 2355555544
Q ss_pred HhhCCe
Q psy3863 76 LKSSGY 81 (285)
Q Consensus 76 L~~~G~ 81 (285)
...|+
T Consensus 215 -~~~~i 219 (440)
T PRK14334 215 -GASGI 219 (440)
T ss_pred -HhcCC
Confidence 44464
No 51
>PRK00955 hypothetical protein; Provisional
Probab=98.88 E-value=1.4e-09 Score=110.73 Aligned_cols=51 Identities=35% Similarity=0.657 Sum_probs=44.5
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCC-CCCChhhhhhHHhhc----CceeeEE
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRE-RSRPMQSILDEVRAL----SDKVYFE 58 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~-~Sr~~~~IV~e~~~~----g~kv~i~ 58 (285)
+..+++|+|++||+++||||+||++||+. +||++++|++|++.. |.+.+|.
T Consensus 290 ~~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~ 345 (620)
T PRK00955 290 EEVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIH 345 (620)
T ss_pred eeEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEE
Confidence 36789999999999999999999999996 999999999999873 5565553
No 52
>PRK01254 hypothetical protein; Provisional
Probab=98.77 E-value=1e-08 Score=104.65 Aligned_cols=44 Identities=39% Similarity=0.691 Sum_probs=40.8
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccC-CCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGR-ERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~-~~Sr~~~~IV~e~~~ 50 (285)
-+..+++|+|++||++.||||+||+.+|+ ++||++++|++|++.
T Consensus 369 ~e~i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~ 413 (707)
T PRK01254 369 YDMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEA 413 (707)
T ss_pred hhheEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHH
Confidence 35578999999999999999999999999 699999999999876
No 53
>PRK05481 lipoyl synthase; Provisional
Probab=98.72 E-value=2.7e-08 Score=93.15 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=42.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeEE
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYFE 58 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i~ 58 (285)
.+++++||++++||+++|+||++|..|| +|+++++|++++++ .|.+ +.+.
T Consensus 50 ~~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~ 103 (289)
T PRK05481 50 SRGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVIT 103 (289)
T ss_pred CCCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4679999999999999999999999986 88999999999876 4654 4443
No 54
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=98.49 E-value=3.3e-07 Score=86.49 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK 54 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k 54 (285)
.+++++|+++++||+++|+||++|++||+.+|. +++++++++. .|.+
T Consensus 60 ~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~-~eei~~~a~~~~~~Glk 109 (302)
T TIGR00510 60 NHGTATFMILGDICTRRCPFCDVAHGRNPLPPD-PEEPAKLAETIKDMGLK 109 (302)
T ss_pred CCCEEEEEecCcCcCCCCCcCCccCCCCCCCCC-HHHHHHHHHHHHHCCCC
Confidence 467999999999999999999999999998875 5778877765 4655
No 55
>PRK12928 lipoyl synthase; Provisional
Probab=98.33 E-value=1.3e-06 Score=81.98 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeEEE
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYFEV 59 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i~T 59 (285)
+++++||++++||+++|+||++|. |+..|++++++++.++. .|.+ +.+..
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg 111 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTS 111 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Confidence 679999999999999999999998 66789999999988765 4554 45543
No 56
>KOG4355|consensus
Probab=98.11 E-value=3.7e-06 Score=81.07 Aligned_cols=76 Identities=22% Similarity=0.563 Sum_probs=66.3
Q ss_pred cCCCCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCc-eeeE-----EEeccccCcchhHHHHH
Q psy3863 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSD-KVYF-----EVFGCQMNVNDTEVVWS 74 (285)
Q Consensus 4 ~~~~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~-kv~i-----~TyGC~~N~~dsell~~ 74 (285)
+.+.++..-+|.|+.||.+.||||.+++|||-+-|+|++++|+.++. .|. .||+ +.||-+++.+...++..
T Consensus 181 kvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~k 260 (547)
T KOG4355|consen 181 KVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWK 260 (547)
T ss_pred hhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHH
Confidence 67789999999999999999999999999999999999999999987 353 3665 68999999999888887
Q ss_pred HHhhC
Q psy3863 75 ILKSS 79 (285)
Q Consensus 75 lL~~~ 79 (285)
+.+..
T Consensus 261 lv~~i 265 (547)
T KOG4355|consen 261 LVEVI 265 (547)
T ss_pred HHHhc
Confidence 76643
No 57
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=97.93 E-value=0.00011 Score=73.64 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~ 168 (285)
..|+|.| ||. ...-..++..++.++ + .+|+..||+.|..|...++++++..|++|+|+--+...-++++
T Consensus 63 ~pdvVgi-s~~--t~~~~~a~~~~~~~k---~-----~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~L 131 (497)
T TIGR02026 63 CPDLVLI-TAI--TPAIYIACETLKFAR---E-----RLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKL 131 (497)
T ss_pred CcCEEEE-ecC--cccHHHHHHHHHHHH---H-----HCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHH
Confidence 3689888 443 233344555555443 2 2378999999999998899988888999998888878888999
Q ss_pred HHhhccC
Q psy3863 169 LALTYSN 175 (285)
Q Consensus 169 v~~~~~~ 175 (285)
++....+
T Consensus 132 l~~l~~g 138 (497)
T TIGR02026 132 IAALENH 138 (497)
T ss_pred HHHHHcC
Confidence 8765443
No 58
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=97.84 E-value=0.00012 Score=72.76 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~ 168 (285)
++|+|.|+|+|.......++.+.++ + .+|+++|++.|..+...++++++..|.+|+|+.-+...-+.++
T Consensus 68 ~~Dlv~is~~t~~~~~~~~ia~~iK------~-----~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l 136 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKTAEALK------E-----QNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEV 136 (472)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHH------H-----hCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHH
Confidence 4799999998877655444433332 2 2378999999999999999988888899988876655566666
Q ss_pred HH
Q psy3863 169 LA 170 (285)
Q Consensus 169 v~ 170 (285)
++
T Consensus 137 ~~ 138 (472)
T TIGR03471 137 AE 138 (472)
T ss_pred Hc
Confidence 64
No 59
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=97.78 E-value=9.4e-05 Score=74.14 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=36.9
Q ss_pred eEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
..+.+..++||++.|+||.++..-+++|.|+++.|++|++.
T Consensus 193 ~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~ 233 (497)
T TIGR02026 193 RVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEW 233 (497)
T ss_pred ceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHH
Confidence 34678899999999999999987788999999999999876
No 60
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=97.77 E-value=6e-05 Score=74.80 Aligned_cols=40 Identities=38% Similarity=0.728 Sum_probs=34.7
Q ss_pred EEEEEccccCCCCCcccccCccc-c-CCCCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTR-G-RERSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~r-G-~~~Sr~~~~IV~e~~~ 50 (285)
.+.|..++||+++|+||.+|... | ++|+|+++.|++|++.
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~ 238 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKY 238 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHH
Confidence 46788999999999999998654 4 5899999999999876
No 61
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.71 E-value=6.4e-05 Score=71.32 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=43.4
Q ss_pred eEEEEEccccCCCCCcccccCccccCC--CCCChhhhhhHHhh---cCceeeEEEeccc
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE--RSRPMQSILDEVRA---LSDKVYFEVFGCQ 63 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~--~Sr~~~~IV~e~~~---~g~kv~i~TyGC~ 63 (285)
..+||++++||++.|+||..+..+|.. .++++++|++++++ .|.+--+.+-|..
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~ 62 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEK 62 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 357999999999999999999999874 49999999999866 4655444566653
No 62
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=97.57 E-value=0.00014 Score=69.02 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=39.2
Q ss_pred EEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK 54 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k 54 (285)
..+|.++.||+++|+||..+..+|..+++++++|++++++ .|.+
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ 59 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCT 59 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCC
Confidence 4789999999999999999999999999999999999876 4544
No 63
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=97.28 E-value=0.00028 Score=68.67 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=37.2
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.....+|.+++||+++|+||.++... +.|+++.+.+++++..
T Consensus 196 ~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~ 237 (490)
T COG1032 196 ENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKE 237 (490)
T ss_pred cceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHH
Confidence 34579999999999999999999987 8899999999998765
No 64
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=97.26 E-value=0.0006 Score=55.64 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=43.8
Q ss_pred EEccccCCCCCcccccCc--cccCCCCCChhhhhhHHhhc----CceeeEEEeccc-cCcchhHHHHHHHhh
Q psy3863 14 VSIMRGCDNMCTYCIVPF--TRGRERSRPMQSILDEVRAL----SDKVYFEVFGCQ-MNVNDTEVVWSILKS 78 (285)
Q Consensus 14 v~i~~GC~~~CsyCiip~--~rG~~~Sr~~~~IV~e~~~~----g~kv~i~TyGC~-~N~~dsell~~lL~~ 78 (285)
|.++.||+++|+||..+. ..+.....+++++++++... |.+.-..+.|-. ++....+.+..+.+.
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHC
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHh
Confidence 678999999999999999 56778999999999998764 323333344532 344455666665555
No 65
>PLN02428 lipoic acid synthase
Probab=97.17 E-value=0.0012 Score=63.65 Aligned_cols=45 Identities=13% Similarity=0.386 Sum_probs=36.2
Q ss_pred eEEEEEccccCCCCCcccccCccccCCCCCChh--hhhhHHhhcCce
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQ--SILDEVRALSDK 54 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~--~IV~e~~~~g~k 54 (285)
+..|+-+++||+.+|+||.++..+|+.+.++.+ ++.+++...|.+
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk 148 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVD 148 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCC
Confidence 678999999999999999999999887777544 556566666655
No 66
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=97.08 E-value=0.0011 Score=65.63 Aligned_cols=68 Identities=26% Similarity=0.560 Sum_probs=53.8
Q ss_pred CeEEEEEccccCCCC----CcccccCccccCCCCCChhhhhhHHhhc----------CceeeEEEeccccCc-----chh
Q psy3863 9 SVSAFVSIMRGCDNM----CTYCIVPFTRGRERSRPMQSILDEVRAL----------SDKVYFEVFGCQMNV-----NDT 69 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~----CsyCiip~~rG~~~Sr~~~~IV~e~~~~----------g~kv~i~TyGC~~N~-----~ds 69 (285)
...+=|.+++||+.+ ||||.-|.- |...+||+++|++|++.+ |.+-.+-+||-.-|- -..
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 567889999999988 999998877 999999999999999872 334567888876542 236
Q ss_pred HHHHHHHh
Q psy3863 70 EVVWSILK 77 (285)
Q Consensus 70 ell~~lL~ 77 (285)
|.|+.++.
T Consensus 261 ealekL~~ 268 (560)
T COG1031 261 EALEKLFR 268 (560)
T ss_pred HHHHHHHH
Confidence 77777764
No 67
>PRK07094 biotin synthase; Provisional
Probab=97.04 E-value=0.0015 Score=61.44 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=34.0
Q ss_pred eEEEEEccccCCCCCcccccCccccC-CCC-CChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGR-ERS-RPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~-~~S-r~~~~IV~e~~~ 50 (285)
.+++|.++.||+++|+||..+...|. .+. .++++|+++++.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~ 81 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKK 81 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHH
Confidence 47889999999999999999987764 232 489999999866
No 68
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.76 E-value=0.0062 Score=59.20 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=56.2
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh-----------cCc-eeeEEEecccc-Ccc-hhHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA-----------LSD-KVYFEVFGCQM-NVN-DTEVV 72 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~-----------~g~-kv~i~TyGC~~-N~~-dsell 72 (285)
.++..+.|.+|.||+.+|+||.+... |..|....++|++++.. .+. .|.+..+|=.+ |.. ..+.+
T Consensus 118 ~~~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~i 196 (368)
T PRK14456 118 PERMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAV 196 (368)
T ss_pred CCceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHHH
Confidence 45678999999999999999998854 66778889999999622 111 24444445333 432 33444
Q ss_pred HHHHhhCCeeecCCCCCCcEEEEeccccc
Q psy3863 73 WSILKSSGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 73 ~~lL~~~G~~~v~~~e~ADviiiNTCtVr 101 (285)
+ .+...|+..- -.+.-|-++|+.+.
T Consensus 197 ~-~l~~~~~~~~---is~r~ItisT~Gl~ 221 (368)
T PRK14456 197 L-TLSTRKYRFS---ISQRKITISTVGIT 221 (368)
T ss_pred H-HHhccccccC---cCcCeeEEECCCCh
Confidence 4 3433332110 12356789999854
No 69
>PRK06256 biotin synthase; Validated
Probab=96.72 E-value=0.0044 Score=58.74 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=43.4
Q ss_pred EEEEc-cccCCCCCcccccCcccc----CCCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSI-MRGCDNMCTYCIVPFTRG----RERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i-~~GC~~~CsyCiip~~rG----~~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
+.+.+ +.||+++|+||..+...+ +++.+++++|+++++. .|. ++.+.+-|-..+..+.+.+.++++
T Consensus 59 ~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~ 133 (336)
T PRK06256 59 TIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVK 133 (336)
T ss_pred EeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHH
Confidence 44444 899999999999987653 3577899999999876 353 455655554333333344444443
No 70
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.65 E-value=0.009 Score=57.62 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=55.8
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhcC----c-eeeEEEeccccCcc--hhHHHHHHHhhCC
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALS----D-KVYFEVFGCQMNVN--DTEVVWSILKSSG 80 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~g----~-kv~i~TyGC~~N~~--dsell~~lL~~~G 80 (285)
.+...+|..|.||+..|+||.+... |..+..++++|++++.... . .|.+...|=.+... ..+.+..+-...|
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPLDNLDEVLKALEILTAPYG 179 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCcccHHHHHHHHHHHhhccc
Confidence 4678999999999999999998885 7677899999999987632 1 13333334343211 1222222223345
Q ss_pred eeecCCCCCCcEEEEecccccc
Q psy3863 81 YSKVNHPREADVILVMTCAIRE 102 (285)
Q Consensus 81 ~~~v~~~e~ADviiiNTCtVr~ 102 (285)
+... .--|.|.||.+..
T Consensus 180 ~~~s-----~r~ItVsT~G~~~ 196 (345)
T PRK14466 180 YGWS-----PKRITVSTVGLKK 196 (345)
T ss_pred cCcC-----CceEEEEcCCCch
Confidence 5221 2357789998543
No 71
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=96.64 E-value=0.0008 Score=57.20 Aligned_cols=40 Identities=38% Similarity=0.777 Sum_probs=34.7
Q ss_pred EEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.+++.++.||+++|+||..+...|+.+..+++++.+++..
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~ 41 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIEL 41 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHH
Confidence 5789999999999999999987766777788888888766
No 72
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.63 E-value=0.0023 Score=61.88 Aligned_cols=89 Identities=27% Similarity=0.366 Sum_probs=57.2
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc-------Ccee-eEEEec--ccc-Cc-chhHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL-------SDKV-YFEVFG--CQM-NV-NDTEVVWS 74 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~-------g~kv-~i~TyG--C~~-N~-~dsell~~ 74 (285)
.++....|..|.||+.+|+||.+++. |..|..++++|++++... |.++ ++.+.| =.+ |. ...++++.
T Consensus 106 ~~~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln~~~v~~~l~~ 184 (356)
T PRK14455 106 EYGNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDNYDNVMDFLRI 184 (356)
T ss_pred cCCceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCCHHHHHHHHHH
Confidence 34677999999999999999999975 568899999999998641 2222 444444 232 32 22334433
Q ss_pred HHhhCCeeecCCCCCCcEEEEeccccc
Q psy3863 75 ILKSSGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 75 lL~~~G~~~v~~~e~ADviiiNTCtVr 101 (285)
+-+..|+.. ...=+-|-||.+.
T Consensus 185 l~~~~g~~~-----s~r~itvsT~G~~ 206 (356)
T PRK14455 185 INDDKGLAI-----GARHITVSTSGIA 206 (356)
T ss_pred HhcccCccc-----CCCceEEEecCch
Confidence 333356532 1234567888876
No 73
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=96.58 E-value=0.008 Score=55.64 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=44.0
Q ss_pred eEEEEEc-cccCCCCCcccccCccc---c-CCCCCChhhhhhHHhh---cCce-eeEEEeccccCcch-hHHHHHHH
Q psy3863 10 VSAFVSI-MRGCDNMCTYCIVPFTR---G-RERSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVND-TEVVWSIL 76 (285)
Q Consensus 10 ~~a~v~i-~~GC~~~CsyCiip~~r---G-~~~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~d-sell~~lL 76 (285)
..+.+.+ +.||+++|.||..+... + ..+.+++++|+++++. .|.+ +.+.+-|-...... .+++..+.
T Consensus 28 ~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~ 104 (296)
T TIGR00433 28 LCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMV 104 (296)
T ss_pred EEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHH
Confidence 4556676 99999999999987754 2 3577889999999865 4543 55655554333222 33444443
No 74
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=96.47 E-value=0.0053 Score=57.80 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=36.6
Q ss_pred EEEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhh---cCc-eeeEE
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRA---LSD-KVYFE 58 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~---~g~-kv~i~ 58 (285)
.-+|.++.||+++|+||......+ +.+.+++|+|+++++. .|. ++.+.
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~ 59 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQ 59 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 357899999999999998875444 3468899999999875 353 45554
No 75
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.36 E-value=0.0083 Score=57.74 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=55.7
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc----Ccee-eEEEecc--c-cCcchhHHHHHHHh-h
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL----SDKV-YFEVFGC--Q-MNVNDTEVVWSILK-S 78 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~----g~kv-~i~TyGC--~-~N~~dsell~~lL~-~ 78 (285)
++..++|..|.||+.+|+||..+ .-|..|..++++|++++... +.++ ++.++|- . +|....-.+..++. .
T Consensus 99 ~~~t~cvSsqvGC~~~C~FC~tg-~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~~ 177 (342)
T PRK14454 99 HGNSICVSTQVGCRMGCKFCAST-IGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNSP 177 (342)
T ss_pred CCCEEEEEcCCCCCCcCCcCCCC-CCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhcc
Confidence 45679999999999999999875 23667889999999998652 2232 5566652 2 23222222233343 3
Q ss_pred CCeeecCCCCCCcEEEEecccccc
Q psy3863 79 SGYSKVNHPREADVILVMTCAIRE 102 (285)
Q Consensus 79 ~G~~~v~~~e~ADviiiNTCtVr~ 102 (285)
.|+.+. .-=+-|.||.+..
T Consensus 178 ~gi~~~-----~r~itvsTsG~~p 196 (342)
T PRK14454 178 YGLNIG-----QRHITLSTCGIVP 196 (342)
T ss_pred cccCcC-----CCceEEECcCChh
Confidence 465221 1125678888654
No 76
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=96.31 E-value=0.035 Score=48.03 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=50.5
Q ss_pred CCeEEEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhhcC---ceeeEEEecccc-CcchhHHHHHHHhhCCe
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRALS---DKVYFEVFGCQM-NVNDTEVVWSILKSSGY 81 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~~g---~kv~i~TyGC~~-N~~dsell~~lL~~~G~ 81 (285)
....+++.+..|||.+|+||-.+...+ .....+++++++.+.+.. ..+.+ +-|-.+ +....++++ .+.+.|+
T Consensus 14 ~g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~-sGGEPll~~~l~~li~-~~~~~g~ 91 (191)
T TIGR02495 14 PGKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQGLIDGVVI-TGGEPTLQAGLPDFLR-KVRELGF 91 (191)
T ss_pred CCCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCeEEE-ECCcccCcHhHHHHHH-HHHHCCC
Confidence 345688889999999999999985322 245788999999987742 13433 235432 323334444 3445564
Q ss_pred eecCCCCCCcEEEEecccc
Q psy3863 82 SKVNHPREADVILVMTCAI 100 (285)
Q Consensus 82 ~~v~~~e~ADviiiNTCtV 100 (285)
-+.++|...
T Consensus 92 ----------~v~i~TNg~ 100 (191)
T TIGR02495 92 ----------EVKLDTNGS 100 (191)
T ss_pred ----------eEEEEeCCC
Confidence 246677665
No 77
>PRK06267 hypothetical protein; Provisional
Probab=96.19 E-value=0.011 Score=56.92 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=46.7
Q ss_pred eEEEEEccccCC--CCCcccccCccccC-----CCCCChhhhhhHHhh---cCceeeEEEeccccCcchhHHHHHHH
Q psy3863 10 VSAFVSIMRGCD--NMCTYCIVPFTRGR-----ERSRPMQSILDEVRA---LSDKVYFEVFGCQMNVNDTEVVWSIL 76 (285)
Q Consensus 10 ~~a~v~i~~GC~--~~CsyCiip~~rG~-----~~Sr~~~~IV~e~~~---~g~kv~i~TyGC~~N~~dsell~~lL 76 (285)
..+.|..+.+|+ ++|+||..+..+++ ...+++++|+++++. .|.+..+.+=|...+..+-+.+.+.+
T Consensus 27 l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~~~~el~~i~e~I 103 (350)
T PRK06267 27 LERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYGYTTEEINDIAEMI 103 (350)
T ss_pred EEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 356677899999 99999998875433 468899999999865 46554455555555544444444444
No 78
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.17 E-value=0.1 Score=43.46 Aligned_cols=106 Identities=11% Similarity=0.125 Sum_probs=70.5
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.++.+.+.|.+.-..-...++..|+..||++++. .++||+|.| |+.-....+.+...+..++..
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhc
Confidence 3577777776544445688888999999987732 357899888 555555555666666666532
Q ss_pred hhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
.. ++.+|++.|=.+..+.+++ +++ ++|-+|++.. .+.+.++.
T Consensus 81 g~-------~~i~vivGG~~~~~~~~~l-~~~-Gvd~~~~~gt--~~~~i~~~ 122 (132)
T TIGR00640 81 GR-------PDILVVVGGVIPPQDFDEL-KEM-GVAEIFGPGT--PIPESAIF 122 (132)
T ss_pred CC-------CCCEEEEeCCCChHhHHHH-HHC-CCCEEECCCC--CHHHHHHH
Confidence 11 2557777776665455554 334 7999999976 56666654
No 79
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.16 E-value=0.0059 Score=58.92 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=55.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhhc-----Cce---eeEEEeccc-cCcchh-HHHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL-----SDK---VYFEVFGCQ-MNVNDT-EVVWSIL 76 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~~-----g~k---v~i~TyGC~-~N~~ds-ell~~lL 76 (285)
.++.+.+|..|.||+.+|+||..+. -|..|....+||++++... +.+ |.+-.+|=. +|.... +.++.+-
T Consensus 96 ~~~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~ 174 (348)
T PRK14467 96 RDHLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMT 174 (348)
T ss_pred CCCcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHc
Confidence 3567899999999999999999873 3767899999999997541 112 333333422 232222 3333322
Q ss_pred hhCCeeecCCCCCCcEEEEeccccc
Q psy3863 77 KSSGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 77 ~~~G~~~v~~~e~ADviiiNTCtVr 101 (285)
...|+... .-=+-|.||.+.
T Consensus 175 ~~~gl~~~-----~r~itvsT~G~~ 194 (348)
T PRK14467 175 SPWGLDLS-----KRRITISTSGII 194 (348)
T ss_pred ChhccCcC-----CCcEEEECCCCh
Confidence 34565332 124678888765
No 80
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.14 E-value=0.006 Score=58.77 Aligned_cols=43 Identities=30% Similarity=0.524 Sum_probs=36.5
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++...+|..|.||+.+|+||.++.. |..+..++++|++++..
T Consensus 98 ~~r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~ 140 (345)
T PRK14457 98 EKRLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLT 140 (345)
T ss_pred CCCCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHH
Confidence 45678999999999999999988653 66678899999999865
No 81
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=96.10 E-value=0.0059 Score=58.87 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=35.7
Q ss_pred eEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
....|..|.||+.+|+||.++.. |..|....++|++++..
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~ 139 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLY 139 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHH
Confidence 67899999999999999999964 77889999999999854
No 82
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=95.98 E-value=0.013 Score=55.92 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=40.9
Q ss_pred EEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
+.|.++.||+++|+||......+ +..-+++|+|+++++. .|. ++.+. -|. ....+.+.+.++++
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~-gG~-~p~~~~~~~~~i~~ 110 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQ-GGI-HPDLDGDFYLDILR 110 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEE-eCC-CCCCCHHHHHHHHH
Confidence 35788999999999998765443 2234899999999876 353 35555 232 22234455455444
No 83
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.97 E-value=0.0076 Score=58.70 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=36.3
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
++....|.+|.||+.+|+||.++. -|..|...++||++++..
T Consensus 119 ~~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~ 160 (373)
T PRK14459 119 DRATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRA 160 (373)
T ss_pred CCceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHH
Confidence 467799999999999999999874 466799999999999854
No 84
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.94 E-value=0.0085 Score=58.35 Aligned_cols=88 Identities=19% Similarity=0.365 Sum_probs=59.9
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh----c-------Cce-eeEEEecc--c-cCcch-hHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA----L-------SDK-VYFEVFGC--Q-MNVND-TEV 71 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~----~-------g~k-v~i~TyGC--~-~N~~d-sel 71 (285)
++....|..|.||+.+|+||.++.. |-.|....++|++++.. . |.+ -++.+.|- . +|... .+.
T Consensus 101 ~~~t~CvSsQvGC~~~C~FC~t~~~-g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~N~d~v~~a 179 (372)
T PRK11194 101 DRATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPA 179 (372)
T ss_pred CCeeEEEecCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCccccCHHHHHHH
Confidence 4677899999999999999999953 66788999999999743 1 122 35566662 2 23222 355
Q ss_pred HHHHHhhCCeeecCCCCCCcEEEEeccccc
Q psy3863 72 VWSILKSSGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 72 l~~lL~~~G~~~v~~~e~ADviiiNTCtVr 101 (285)
+..+.+..|+.... -=+-|.||.+.
T Consensus 180 l~~l~~~~g~~i~~-----r~itVsTsG~~ 204 (372)
T PRK11194 180 MEIMLDDFGFGLSK-----RRVTLSTSGVV 204 (372)
T ss_pred HHHHhhhhccCcCC-----CeEEEECCCCc
Confidence 66666677764432 14788999954
No 85
>PRK08508 biotin synthase; Provisional
Probab=95.88 E-value=0.017 Score=53.84 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=43.6
Q ss_pred cccCCCCCcccccCccc-c---CCCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHh
Q psy3863 17 MRGCDNMCTYCIVPFTR-G---RERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 17 ~~GC~~~CsyCiip~~r-G---~~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
+.||+.+|+||..+... + +++-+++|+|++++++ .|. .+.+.+-|...+..+.|++.++++
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~ 82 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAK 82 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHH
Confidence 67999999999987643 2 2344799999999876 453 466766676666666677776554
No 86
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=95.78 E-value=0.011 Score=57.12 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=36.3
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++....|..|.||+.+|+||.++.. |..+....++|++++..
T Consensus 102 ~~~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~ 144 (355)
T TIGR00048 102 KDRATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLR 144 (355)
T ss_pred CCCcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHH
Confidence 35677999999999999999998754 56788999999999753
No 87
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.75 E-value=0.012 Score=56.78 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=36.2
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++....|.+|.||+.+|.||.... -|..|..++++|++++..
T Consensus 100 ~~~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~ 142 (349)
T PRK14463 100 EDRNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCA 142 (349)
T ss_pred cCCcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHH
Confidence 3467899999999999999998664 355788999999999865
No 88
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.67 E-value=0.013 Score=56.46 Aligned_cols=43 Identities=35% Similarity=0.525 Sum_probs=35.9
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++....|..|.||+.+|+||.++.. |..+...+++|++++..
T Consensus 90 ~~~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~ 132 (343)
T PRK14468 90 LDRKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLA 132 (343)
T ss_pred cCCCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHH
Confidence 34567899999999999999987653 66788999999999753
No 89
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.61 E-value=0.014 Score=56.05 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=34.8
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVR 49 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~ 49 (285)
.++....|.+|.||+.+|.||.++. .|..|..+.++|++++.
T Consensus 98 ~~~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~ 139 (343)
T PRK14469 98 PDRITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQIL 139 (343)
T ss_pred CCCeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHH
Confidence 3567789999999999999998764 35557788999999984
No 90
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.54 E-value=0.033 Score=54.01 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=45.8
Q ss_pred EEEEccccCCCCCcccccCcccc-CCCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHhh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRG-RERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILKS 78 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG-~~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~~ 78 (285)
+.+.++.+|+++|+||.-....+ +..-.++++|+++++. .|. ++.+.+ |......+.+.+.++++.
T Consensus 76 ~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~ 146 (371)
T PRK09240 76 TPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLT-GEHEAKVGVDYIRRALPI 146 (371)
T ss_pred eceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHH
Confidence 34556999999999998754333 2356799999999765 454 477777 876655566666666543
No 91
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=95.45 E-value=0.036 Score=46.20 Aligned_cols=28 Identities=32% Similarity=0.848 Sum_probs=22.3
Q ss_pred EEccccCCCCCcccccCccccCCCCCCh
Q psy3863 14 VSIMRGCDNMCTYCIVPFTRGRERSRPM 41 (285)
Q Consensus 14 v~i~~GC~~~CsyCiip~~rG~~~Sr~~ 41 (285)
+.++.||+++|+||..+...+.....+.
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~ 28 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPP 28 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccc
Confidence 3578999999999999998876544444
No 92
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=95.17 E-value=0.032 Score=53.61 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=42.2
Q ss_pred EEEEccccCCCCCcccccCccccCC--CCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRGRE--RSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG~~--~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~ 77 (285)
.+|..+.||.+.|+||......+.. ...++|+|++++++ .|.+ +.+. .|...+ ...+.+.++++
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~~G~~~v~l~-~G~~p~-~~~~~~~e~i~ 119 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYAPGATEVHIV-GGLHPN-LPFEWYLDMIR 119 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHHCCCcEEEEe-cCCCCC-CCHHHHHHHHH
Confidence 4578899999999999986554422 23799999999876 3543 5554 564443 33455555544
No 93
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.14 E-value=0.022 Score=55.18 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=57.0
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh----cC---c-eeeEEEecc--cc-CcchhHHHHHH
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA----LS---D-KVYFEVFGC--QM-NVNDTEVVWSI 75 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~----~g---~-kv~i~TyGC--~~-N~~dsell~~l 75 (285)
.++....|..|.||+.+|.||.++. -|..|...+++|++++.. .. . .-++...|- .+ |....-..-++
T Consensus 107 ~~r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~ 185 (356)
T PRK14462 107 HAKYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDNLDNVSKAIKI 185 (356)
T ss_pred CCCceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccCHHHHHHHHHH
Confidence 3567789999999999999998773 366789999999999863 11 1 134555542 22 32222222233
Q ss_pred Hhh-CCeeecCCCCCCcEEEEeccccc
Q psy3863 76 LKS-SGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 76 L~~-~G~~~v~~~e~ADviiiNTCtVr 101 (285)
|.+ .|+... .-=+-|.||.+.
T Consensus 186 l~~~~Gl~~~-----~r~itVsTsG~~ 207 (356)
T PRK14462 186 FSENDGLAIS-----PRRQTISTSGLA 207 (356)
T ss_pred hcCccCCCcC-----CCceEEECCCCh
Confidence 444 576432 234678899876
No 94
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=95.04 E-value=0.042 Score=52.24 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=33.1
Q ss_pred EEEEccccCCCCCcccccCccccC--CCCCChhhhhhHHhh---cCc-eeeE
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA---LSD-KVYF 57 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~---~g~-kv~i 57 (285)
.++.++.||+++|+||......|. ...+++++|+++++. .|. .+.+
T Consensus 43 ~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l 94 (340)
T TIGR03699 43 RNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILL 94 (340)
T ss_pred cccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 345679999999999986544443 346899999998865 354 3555
No 95
>PRK08445 hypothetical protein; Provisional
Probab=94.95 E-value=0.044 Score=52.78 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=40.3
Q ss_pred EEEEccccCCCCCcccccCccccC--CCCCChhhhhhHHhh---cCceeeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA---LSDKVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~---~g~kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
..|.++.||.++|+||......+. ..-.++++|++.+++ .|.+ .+..-|-.....+.+.+.++++
T Consensus 44 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~-~i~~~gg~~~~~~~e~~~~l~~ 113 (348)
T PRK08445 44 RNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGT-QILFQGGVHPKLKIEWYENLVS 113 (348)
T ss_pred cccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCC-EEEEecCCCCCCCHHHHHHHHH
Confidence 457889999999999988764322 224489999988766 3433 2222332223345556665554
No 96
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=94.84 E-value=0.033 Score=53.69 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh----cCce-eeEEEecc--cc-Ccch-hHHHHHHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA----LSDK-VYFEVFGC--QM-NVND-TEVVWSILKS 78 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~----~g~k-v~i~TyGC--~~-N~~d-sell~~lL~~ 78 (285)
++....|..|.||+..|+||.+.. -|-.|....++|++++.. .+.+ .++.=+|- .+ |... .+.+. .+..
T Consensus 103 ~~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~-~l~~ 180 (342)
T PRK14465 103 GRKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAAS-ILHD 180 (342)
T ss_pred CceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHH-HHhC
Confidence 356799999999999999999955 466799999999999743 1333 44554452 22 2111 12222 3332
Q ss_pred -CCeeecCCCCCCcEEEEeccccc
Q psy3863 79 -SGYSKVNHPREADVILVMTCAIR 101 (285)
Q Consensus 79 -~G~~~v~~~e~ADviiiNTCtVr 101 (285)
.|+... .--|-|+||.+-
T Consensus 181 ~~~~~~~-----~r~itvST~G~~ 199 (342)
T PRK14465 181 PDAFNLG-----AKRITISTSGVV 199 (342)
T ss_pred hhhhcCC-----CCeEEEeCCCch
Confidence 344322 236889999976
No 97
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=94.81 E-value=0.033 Score=53.83 Aligned_cols=40 Identities=33% Similarity=0.510 Sum_probs=34.1
Q ss_pred CeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHh
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVR 49 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~ 49 (285)
+....|..|.||+.+|.||.++.. |..|..++++|++++.
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~ 140 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVL 140 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHH
Confidence 567899999999999999987743 5567889999999983
No 98
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=94.72 E-value=0.1 Score=47.54 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=44.5
Q ss_pred CCeEEEEEccccCCCCCcccccCccc-----cCCCCCChhhhhhHHhhcC---ce-eeEEEecccc-CcchhHHHHHHHh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTR-----GRERSRPMQSILDEVRALS---DK-VYFEVFGCQM-NVNDTEVVWSILK 77 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~r-----G~~~Sr~~~~IV~e~~~~g---~k-v~i~TyGC~~-N~~dsell~~lL~ 77 (285)
+....||..+ |||.+|.||-.+++- +.....+.+++++.+...+ .+ |.+. =|=.+ .....+++ +.|.
T Consensus 21 G~~~~FvR~~-gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lT-GGEPll~~~l~~li-~~l~ 97 (238)
T TIGR03365 21 GQKTMFVRTG-GCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLS-GGNPALQKPLGELI-DLGK 97 (238)
T ss_pred CCeEEEEEeC-CcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEe-CCchhhhHhHHHHH-HHHH
Confidence 3445677776 999999999988742 1223478899999887642 22 3332 24332 22334444 4456
Q ss_pred hCCeee
Q psy3863 78 SSGYSK 83 (285)
Q Consensus 78 ~~G~~~ 83 (285)
+.|+.+
T Consensus 98 ~~g~~v 103 (238)
T TIGR03365 98 AKGYRF 103 (238)
T ss_pred HCCCCE
Confidence 678754
No 99
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=94.66 E-value=0.041 Score=52.87 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.7
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
++....|..|.||+..|+||.+... |-.|....++|++++..
T Consensus 95 ~~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~ 136 (336)
T PRK14470 95 THHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLA 136 (336)
T ss_pred CCCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999753 55677899999999754
No 100
>PRK00955 hypothetical protein; Provisional
Probab=94.55 E-value=0.029 Score=58.01 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=25.0
Q ss_pred cCc---c--c--cccCCcc-cccChHHHHhhhhccc
Q psy3863 208 DGR---W--S--IYVDGRW-RRKLGQQMVDGRSMSM 235 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~~-rS~~~~~iv~~~~~~~ 235 (285)
.|| | | |++||+. +|+|+++||++++.+.
T Consensus 300 RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~ 335 (620)
T PRK00955 300 RGCFGGCSFCAITFHQGRFIQSRSQESILREAKELT 335 (620)
T ss_pred CCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHH
Confidence 899 5 7 8999997 9999999999998764
No 101
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.074 Score=47.85 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=50.6
Q ss_pred CCeEEEEEccccCCCCCcccccCcccc-----CCCCCChhhhhhHHhhcCcee-eE-EEeccccCcchhHHHHHHHhhCC
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRG-----RERSRPMQSILDEVRALSDKV-YF-EVFGCQMNVNDTEVVWSILKSSG 80 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG-----~~~Sr~~~~IV~e~~~~g~kv-~i-~TyGC~~N~~dsell~~lL~~~G 80 (285)
.....||..+ |||.+|.||-.+++.- .......++|+++++..+.+. .+ .|=|=.+-..+-..+.+.|...|
T Consensus 21 Gr~~vFVR~~-GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g 99 (212)
T COG0602 21 GRPSVFVRFA-GCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLG 99 (212)
T ss_pred cceeEEEEcC-CCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCC
Confidence 4455666654 9999999999997753 367889999999999864332 33 34454444434444455566669
Q ss_pred eeec
Q psy3863 81 YSKV 84 (285)
Q Consensus 81 ~~~v 84 (285)
|...
T Consensus 100 ~~~~ 103 (212)
T COG0602 100 FRIA 103 (212)
T ss_pred ceEE
Confidence 8664
No 102
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=94.04 E-value=0.16 Score=43.11 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=39.8
Q ss_pred EEEccccCCCCCcccccCcc-ccC-CCCCChhhhhhHHhhcCceeeEEEe-ccccCcchhHHHHHHHhhCCe
Q psy3863 13 FVSIMRGCDNMCTYCIVPFT-RGR-ERSRPMQSILDEVRALSDKVYFEVF-GCQMNVNDTEVVWSILKSSGY 81 (285)
Q Consensus 13 ~v~i~~GC~~~CsyCiip~~-rG~-~~Sr~~~~IV~e~~~~g~kv~i~Ty-GC~~N~~dsell~~lL~~~G~ 81 (285)
++-.-.|||.+|.||-.|.+ ... ....+.+++++.+.+....+.-.|+ |-.++..+...+...+++.|+
T Consensus 18 ~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl 89 (147)
T TIGR02826 18 LAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRSLISCVLFLGGEWNREALLSLLKIFKEKGL 89 (147)
T ss_pred EEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCCCCCEEEEechhcCHHHHHHHHHHHHHCCC
Confidence 33334499999999999876 222 3457889999888764211111222 222443334344445666675
No 103
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=93.98 E-value=0.059 Score=52.03 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=33.3
Q ss_pred EEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
..+|..|.||+..|.||.+-. .|-.|..+.++|++++..
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~-~g~~RnLs~~EI~~Qv~~ 135 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGR-SGLLRQLGSAEIVAQVVL 135 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCC-CCCCCCCCHHHHHHHHHH
Confidence 589999999999999998742 266788999999999865
No 104
>PRK05481 lipoyl synthase; Provisional
Probab=93.60 E-value=0.13 Score=48.27 Aligned_cols=33 Identities=6% Similarity=-0.155 Sum_probs=25.3
Q ss_pred CCCeeEEEE--cCc---c--c--cccCCcccccChHHHHhhhhc
Q psy3863 199 TDGRRSIYV--DGR---W--S--IYVDGRWRRKLGQQMVDGRSM 233 (285)
Q Consensus 199 ~~~~~a~~i--~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~ 233 (285)
.+...+|+. +|| | | |++|| +|+++++|+++++.
T Consensus 50 ~~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~ 91 (289)
T PRK05481 50 SRGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEA 91 (289)
T ss_pred CCCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHH
Confidence 345666665 899 5 7 67776 78999999999874
No 105
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=93.51 E-value=0.25 Score=39.18 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=38.2
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEE-ECCC
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLV-AGPD 160 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~V-vG~~ 160 (285)
..|+|.+.+ + ....-..+...++.++ + .+|+.+|++.|=.+...++++++..+++|.+ +|..
T Consensus 51 ~pd~V~iS~-~-~~~~~~~~~~l~~~~k---~-----~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 51 RPDVVGISV-S-MTPNLPEAKRLARAIK---E-----RNPNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp TCSEEEEEE-S-SSTHHHHHHHHHHHHH---T-----TCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCcEEEEEc-c-CcCcHHHHHHHHHHHH---h-----cCCCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 468888844 2 1222334444444433 2 2468899999988888888877655788864 4443
No 106
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=93.46 E-value=0.09 Score=51.24 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=34.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVR 49 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~ 49 (285)
.++....|..|.||...|+||.+-. -|-.|....+||++++.
T Consensus 104 ~~r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~ 145 (371)
T PRK14461 104 PDRATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVI 145 (371)
T ss_pred CCCceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHH
Confidence 3467799999999999999995532 26679999999999974
No 107
>PRK01254 hypothetical protein; Provisional
Probab=93.40 E-value=0.12 Score=53.85 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=24.6
Q ss_pred cCc---c--c--cccCCc-ccccChHHHHhhhhccc
Q psy3863 208 DGR---W--S--IYVDGR-WRRKLGQQMVDGRSMSM 235 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~-~rS~~~~~iv~~~~~~~ 235 (285)
.|| | | ++.||+ .+|+++++||++++.+.
T Consensus 380 RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~ 415 (707)
T PRK01254 380 RGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIR 415 (707)
T ss_pred cCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHH
Confidence 798 5 7 899999 69999999999988654
No 108
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.39 E-value=0.12 Score=49.92 Aligned_cols=40 Identities=20% Similarity=0.552 Sum_probs=32.9
Q ss_pred eEEEEEccccCCCCCcccccCc--cccCCCCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPF--TRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~--~rG~~~Sr~~~~IV~e~~~ 50 (285)
...||.|.- |+++|+||..+. .+++.+++.++.+++|++.
T Consensus 2 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~ 43 (377)
T PRK08599 2 TSAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNT 43 (377)
T ss_pred ceEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHH
Confidence 568999997 999999999885 4566677788999999854
No 109
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=93.23 E-value=0.25 Score=47.77 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=41.8
Q ss_pred EEEccccCCCCCcccccCcccc-CCCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHhh
Q psy3863 13 FVSIMRGCDNMCTYCIVPFTRG-RERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILKS 78 (285)
Q Consensus 13 ~v~i~~GC~~~CsyCiip~~rG-~~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~~ 78 (285)
-+.++.+|+++|+||.-..-.+ +..-.+.++|+++++. .|. ++.+.+ |......+.+.+.++++.
T Consensus 76 ~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~ 145 (366)
T TIGR02351 76 PLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVT-GESEKAAGVEYIAEAIKL 145 (366)
T ss_pred eeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHH
Confidence 4556999999999997743211 1133488999988765 454 466664 765555556666666543
No 110
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=93.17 E-value=0.43 Score=45.50 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=31.8
Q ss_pred eEEEEEccccCCCCCcccccCcc---ccCCCCCChhhhhhHHhhc-CceeeEEEecccc
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFT---RGRERSRPMQSILDEVRAL-SDKVYFEVFGCQM 64 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~---rG~~~Sr~~~~IV~e~~~~-g~kv~i~TyGC~~ 64 (285)
.++.+.++.||+.+|.||..... ++...+...+++++.++.. +.+.-+.|=|-.+
T Consensus 96 ~r~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL 154 (321)
T TIGR03821 96 GRVLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPL 154 (321)
T ss_pred CEEEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccc
Confidence 35778899999999999986432 2222333445555555543 3332222336554
No 111
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=93.00 E-value=0.64 Score=37.64 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=51.7
Q ss_pred CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHH
Q psy3863 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167 (285)
Q Consensus 88 e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e 167 (285)
.+.|+|.+. |...+.. .++..++.+| + .+|+.+|++.|-.+...++.+ -..+.+|.|+--+...-+++
T Consensus 38 ~~pdiv~~S-~~~~~~~--~~~~~~~~ik---~-----~~p~~~iv~GG~~~t~~p~~~-~~~~~~D~vv~GEgE~~~~~ 105 (127)
T cd02068 38 LKPDVVGIS-LMTSAIY--EALELAKIAK---E-----VLPNVIVVVGGPHATFFPEEI-LEEPGVDFVVIGEGEETFLK 105 (127)
T ss_pred cCCCEEEEe-eccccHH--HHHHHHHHHH---H-----HCCCCEEEECCcchhhCHHHH-hcCCCCCEEEECCcHHHHHH
Confidence 356888774 5555432 5555555554 2 136789999999998888875 34678998886666678888
Q ss_pred HHHhhccC
Q psy3863 168 LLALTYSN 175 (285)
Q Consensus 168 ~v~~~~~~ 175 (285)
+++....+
T Consensus 106 l~~~l~~g 113 (127)
T cd02068 106 LLEELEEG 113 (127)
T ss_pred HHHHHHcC
Confidence 88765433
No 112
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=92.93 E-value=0.12 Score=49.54 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=22.9
Q ss_pred CeEEEEEccccCCCCCcccccCccccC
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTRGR 35 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~rG~ 35 (285)
+.++++.++.||+.+|+||..+...+.
T Consensus 112 ~~rvll~~T~gCn~~C~yC~~~~~~~~ 138 (331)
T TIGR00238 112 VNRALFLVKGGCAVNCRYCFRRHFPYK 138 (331)
T ss_pred CCcEEEEeCCCCCCCCcCCCCCCcCCC
Confidence 468899999999999999998766543
No 113
>PRK07360 FO synthase subunit 2; Reviewed
Probab=92.46 E-value=0.19 Score=48.75 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=42.6
Q ss_pred EEEEccccCCCCCcccccCccccC--CCCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHhh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILKS 78 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~~ 78 (285)
+.|.++..|+.+|.||..-.-.+. ....+.++|++.+++ .|.+ +.+. -|...+..+.+.+.++++.
T Consensus 62 ~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~-~G~~p~~~~~e~~~~~i~~ 133 (371)
T PRK07360 62 RNINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQ-GGLHPAADSLEFYLEILEA 133 (371)
T ss_pred cCcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEc-cCCCCCCCcHHHHHHHHHH
Confidence 346779999999999987543221 124799999988765 4644 5555 5654444445555555543
No 114
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=92.33 E-value=0.16 Score=48.17 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=24.8
Q ss_pred CCeeEEEE--cCc---c--c--cccCCcccccChHHHHhhhhc
Q psy3863 200 DGRRSIYV--DGR---W--S--IYVDGRWRRKLGQQMVDGRSM 233 (285)
Q Consensus 200 ~~~~a~~i--~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~ 233 (285)
.++.+|.+ +|| | | +++||+.+| .++++++.++.
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~ 102 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAET 102 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHH
Confidence 45666766 899 5 7 799999888 46888887664
No 115
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=91.98 E-value=0.15 Score=45.48 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=29.2
Q ss_pred EEEEEccccCCCCCcccccCccc-c-CCCCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTR-G-RERSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~r-G-~~~Sr~~~~IV~e~~~ 50 (285)
..++-...|||.+|.||..+... . ..+..+++++++++..
T Consensus 16 ~~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~ 57 (235)
T TIGR02493 16 IRFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGS 57 (235)
T ss_pred ceEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHH
Confidence 45567777999999999876542 1 1345788999888765
No 116
>PRK15108 biotin synthase; Provisional
Probab=91.93 E-value=0.51 Score=45.39 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=42.0
Q ss_pred EEEEEc-cccCCCCCcccccCcc--ccC--CCCCChhhhhhHHhh---cCc-eeeEEEeccccCcchhHHHHHHHhh
Q psy3863 11 SAFVSI-MRGCDNMCTYCIVPFT--RGR--ERSRPMQSILDEVRA---LSD-KVYFEVFGCQMNVNDTEVVWSILKS 78 (285)
Q Consensus 11 ~a~v~i-~~GC~~~CsyCiip~~--rG~--~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC~~N~~dsell~~lL~~ 78 (285)
.+.+.+ +.+|+.+|.||.-... .+. ..-.++++|++.++. .|. ++.+.+=|-.-...+.+.+.++++.
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ 119 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQG 119 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 556666 9999999999976532 232 233699999999875 343 3555443322222345666666544
No 117
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=91.92 E-value=0.46 Score=47.78 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=45.5
Q ss_pred EEEEEccccCCCCCcccccCccccC--CCCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~ 77 (285)
.+.|.++..|.+.|+||....-.+. -.-.++++|+++++. .|.+ +.+. .|-+....+.+.+.++++
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~Lv-sGe~p~~~~~eyi~e~i~ 156 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALV-AGEDPPNCDIEYILESIK 156 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEE-eCCCCCCCCHHHHHHHHH
Confidence 4666789999999999988654332 235689999999866 4654 5554 676544456666666654
No 118
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=91.79 E-value=0.18 Score=48.83 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=36.0
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++....|..|.||+-.|+||.+... |..|-...+||++++..
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~-G~~RNLs~~EIv~Qv~~ 140 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQG-GLNRNLSAGEIVEQVLL 140 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccc-cceeccCHHHHHHHHHH
Confidence 44567899999999999999987643 66789999999999754
No 119
>KOG3799|consensus
Probab=91.74 E-value=0.054 Score=45.62 Aligned_cols=25 Identities=40% Similarity=0.945 Sum_probs=20.4
Q ss_pred EccccCCCCCcccccCc-cc--cCCCCC
Q psy3863 15 SIMRGCDNMCTYCIVPF-TR--GRERSR 39 (285)
Q Consensus 15 ~i~~GC~~~CsyCiip~-~r--G~~~Sr 39 (285)
|.+|||-+.|+||.+.+ || ||..+|
T Consensus 75 KFADG~GH~C~YCq~r~CARCGGrv~lr 102 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRFCARCGGRVSLR 102 (169)
T ss_pred ccccccCcccchhhhhHHHhcCCeeeec
Confidence 67899999999999999 77 554444
No 120
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=91.70 E-value=0.25 Score=46.83 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCeEEEEEccccCCC----CCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDN----MCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~----~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
....+.|..+.||++ .|+||..+. +..+.+++++|++++..
T Consensus 13 ~~~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~ 57 (313)
T TIGR01210 13 GKSLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDE 57 (313)
T ss_pred cceEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHH
Confidence 345567899999999 599996543 33456799999999866
No 121
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.49 E-value=3.4 Score=34.55 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=58.5
Q ss_pred eeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhh
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ 120 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr 120 (285)
+-+.+.|.+.-.---..+..+|+..||+.+.- .+++|+|.+ ||.-+ .....+.+.+.++++.+
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~-~~~~~~~~~~~~L~~~~- 82 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYG-HGEIDCRGLREKCIEAG- 82 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCccc-cCHHHHHHHHHHHHhcC-
Confidence 44444443322222345566677788877611 346888766 44444 45666777777776321
Q ss_pred hhccCCCCCcEEEEEccch--hhhhH---HHHhhCCCccEEECCCC-cCCHHHHHH
Q psy3863 121 IHKKHRTFPLKIGVLGCMA--ERLKK---SLLEKEQALDLVAGPDS-YKDLPRLLA 170 (285)
Q Consensus 121 ~~~~~~~p~~~IvVtGC~a--q~~~~---~l~~~~~~Vd~VvG~~~-~~~l~e~v~ 170 (285)
.++.+|++.|=.. ...++ +.++++ ++|.|+++.. .+.+.+++.
T Consensus 83 ------~~~~~i~vGG~~~~~~~~~~~~~~~l~~~-G~~~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 83 ------LGDILLYVGGNLVVGKHDFEEVEKKFKEM-GFDRVFPPGTDPEEAIDDLK 131 (137)
T ss_pred ------CCCCeEEEECCCCCCccChHHHHHHHHHc-CCCEEECcCCCHHHHHHHHH
Confidence 1366888888652 11122 223444 5899999654 444444444
No 122
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.46 E-value=3.2 Score=34.89 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=57.2
Q ss_pred eeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhh
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ 120 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr 120 (285)
+-+.|-|-+.-..=-.++..+|+..||+.++- .++||+|-+.+=. ..+...+.+.+..+++.+
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~--~~~~~~~~~~~~~l~~~g- 80 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY--GHGEIDCKGLRQKCDEAG- 80 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--ccCHHHHHHHHHHHHHCC-
Confidence 44444443322222367777888888887722 3578998775433 233444555555554321
Q ss_pred hhccCCCCCcEEEEEcc--chhhhhHH---HHhhCCCccEEECCCCcCCHHHHHH
Q psy3863 121 IHKKHRTFPLKIGVLGC--MAERLKKS---LLEKEQALDLVAGPDSYKDLPRLLA 170 (285)
Q Consensus 121 ~~~~~~~p~~~IvVtGC--~aq~~~~~---l~~~~~~Vd~VvG~~~~~~l~e~v~ 170 (285)
. .+..+++.|= .++.+.++ .++++ ++|.|||+.. .+.++++
T Consensus 81 ---l---~~~~vivGG~~vi~~~d~~~~~~~l~~~-Gv~~vF~pgt--~~~~iv~ 126 (134)
T TIGR01501 81 ---L---EGILLYVGGNLVVGKQDFPDVEKRFKEM-GFDRVFAPGT--PPEVVIA 126 (134)
T ss_pred ---C---CCCEEEecCCcCcChhhhHHHHHHHHHc-CCCEEECcCC--CHHHHHH
Confidence 1 1446777773 45433321 24445 6999999876 3444443
No 123
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=91.37 E-value=0.28 Score=44.26 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=30.4
Q ss_pred EEEEEccccCCCCCcccccCccc--cCCCCCChhhhhhHHhhc
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTR--GRERSRPMQSILDEVRAL 51 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~r--G~~~Sr~~~~IV~e~~~~ 51 (285)
..++-...|||.+|.||.-+... +..+..+++++++++...
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~ 63 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTY 63 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHh
Confidence 45666688999999999976532 223457899999998763
No 124
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=90.69 E-value=0.82 Score=43.38 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=28.8
Q ss_pred cCCCCCeEEEE--EccccCCCCCcccccCcc--ccCCCCCChhhhhhHHh
Q psy3863 4 RLNEDSVSAFV--SIMRGCDNMCTYCIVPFT--RGRERSRPMQSILDEVR 49 (285)
Q Consensus 4 ~~~~~~~~a~v--~i~~GC~~~CsyCiip~~--rG~~~Sr~~~~IV~e~~ 49 (285)
..+.++...|| .|.++||.+|+||..+.. +.+....+.+++.+-+.
T Consensus 6 ~d~~gr~i~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~ 55 (329)
T PRK13361 6 VDSFGRTVTYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQ 55 (329)
T ss_pred cCCCCCccCeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHH
Confidence 44445555555 569999999999975421 22344567777765443
No 125
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.66 E-value=3.4 Score=33.47 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCc
Q psy3863 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY 162 (285)
Q Consensus 88 e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~ 162 (285)
..+|+|.| |+..+.....+.+.++.+++.. .++.++++.|=.+....+++ .++ ++|.+|++...
T Consensus 49 ~~~d~V~i--S~~~~~~~~~~~~~~~~L~~~~-------~~~i~i~~GG~~~~~~~~~~-~~~-G~d~~~~~~~~ 112 (122)
T cd02071 49 EDVDVIGL--SSLSGGHMTLFPEVIELLRELG-------AGDILVVGGGIIPPEDYELL-KEM-GVAEIFGPGTS 112 (122)
T ss_pred cCCCEEEE--cccchhhHHHHHHHHHHHHhcC-------CCCCEEEEECCCCHHHHHHH-HHC-CCCEEECCCCC
Confidence 45788877 5556666777777777776421 12456666664443333333 333 69999998763
No 126
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=90.52 E-value=0.77 Score=43.33 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=29.8
Q ss_pred EEEEEccccCCCCCcccccCcc---ccCCCCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFT---RGRERSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~---rG~~~Sr~~~~IV~e~~~ 50 (285)
.-.|.++++||.+|+||..+.. .++.+..+.+++.+.+..
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~ 60 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRA 60 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHH
Confidence 3467889999999999987652 345667788888776543
No 127
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.21 E-value=6.6 Score=32.75 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEE
Q psy3863 70 EVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVL 135 (285)
Q Consensus 70 ell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVt 135 (285)
.+++.+|+..||+.++- .++||+|.+.+=. ..+...+.+.+..+++.. . .+.+|+|.
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~--t~~~~~~~~~~~~l~~~g------l-~~v~vivG 87 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLY--GHGEIDCKGLREKCDEAG------L-KDILLYVG 87 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cCCHHHHHHHHHHHHHCC------C-CCCeEEEE
Confidence 46666777777777521 3568998875422 233344555555554221 1 14677777
Q ss_pred ccc--hhhhh---HHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 136 GCM--AERLK---KSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 136 GC~--aq~~~---~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
|=. +.... .+.++++ ++|.|||+.. .+.++++.
T Consensus 88 G~~~i~~~d~~~~~~~L~~~-Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEM-GFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred CCCCCChhhhHHHHHHHHHc-CCCEEECcCC--CHHHHHHH
Confidence 653 22222 1223344 7999999987 56666654
No 128
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=89.74 E-value=0.99 Score=41.94 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=27.0
Q ss_pred EEEEEccccCCCCCcccccCccccC-CCCCChhhhhhHH
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGR-ERSRPMQSILDEV 48 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~-~~Sr~~~~IV~e~ 48 (285)
...|.+.++||.+|.||-.+..... .+..+.+++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i 49 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIV 49 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHH
Confidence 4678899999999999977643322 3456777775544
No 129
>PLN02389 biotin synthase
Probab=89.56 E-value=1.1 Score=43.84 Aligned_cols=69 Identities=14% Similarity=0.332 Sum_probs=43.2
Q ss_pred eEEEEEc-cccCCCCCcccccCcc--ccC--CCCCChhhhhhHHhh---cCc-eeeEEEecc-ccCc-chhHHHHHHHhh
Q psy3863 10 VSAFVSI-MRGCDNMCTYCIVPFT--RGR--ERSRPMQSILDEVRA---LSD-KVYFEVFGC-QMNV-NDTEVVWSILKS 78 (285)
Q Consensus 10 ~~a~v~i-~~GC~~~CsyCiip~~--rG~--~~Sr~~~~IV~e~~~---~g~-kv~i~TyGC-~~N~-~dsell~~lL~~ 78 (285)
..+.+.+ +.||++.|.||.-..- .|. +.-.++++|++.++. .|. ++.+.+-|- ..+. .+-+.+.++++.
T Consensus 82 ~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ 161 (379)
T PLN02389 82 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKE 161 (379)
T ss_pred EEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHH
Confidence 4566777 7999999999986432 232 345799999999876 353 466655443 2232 234555555544
No 130
>PRK05926 hypothetical protein; Provisional
Probab=89.09 E-value=0.98 Score=43.99 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=40.7
Q ss_pred EccccCCCCCcccccCccccC--CCCCChhhhhhHHhh--cCc-eeeEEEeccccCcchhHHHHHHHh
Q psy3863 15 SIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA--LSD-KVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 15 ~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~--~g~-kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
..+..|.+.|.||......|. ..-.++|+|++++++ .|. ++.+.+ |-..+ .+.+.+.++++
T Consensus 73 n~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a~~G~~ei~iv~-G~~p~-~~~e~~~e~i~ 138 (370)
T PRK05926 73 YPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKENPSPITETHIVA-GCFPS-CNLAYYEELFS 138 (370)
T ss_pred ecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHHhcCCCEEEEEe-CcCCC-CCHHHHHHHHH
Confidence 348999999999995444342 345679999999876 343 477775 76533 45555555554
No 131
>PRK12928 lipoyl synthase; Provisional
Probab=88.62 E-value=0.55 Score=44.19 Aligned_cols=33 Identities=9% Similarity=-0.097 Sum_probs=25.0
Q ss_pred CCeeEEEE--cCc---c--ccccCCcccccChHHHHhhhh
Q psy3863 200 DGRRSIYV--DGR---W--SIYVDGRWRRKLGQQMVDGRS 232 (285)
Q Consensus 200 ~~~~a~~i--~Gc---c--C~~aRG~~rS~~~~~iv~~~~ 232 (285)
+.+.+|++ +|| | |.+.+|+..|++++++++.++
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~g~~~~~~~eei~~~a~ 97 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDKGRPMPLDPDEPERVAE 97 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccCCCCCCCCHHHHHHHHH
Confidence 45666776 889 5 755558888999999999875
No 132
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=87.97 E-value=5.9 Score=41.98 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=70.0
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCCC--------------CCCcEEEEeccccccchHHHHHHHHHHHHHhh
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHP--------------READVILVMTCAIRENAEGKVWDRLRFYRSMK 119 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~--------------e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~k 119 (285)
+|.+.+.|-+.-..-...+...|+..||++.... +.+|+|+| |+--..-.+.+-..+..++..+
T Consensus 584 kV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~~G 661 (714)
T PRK09426 584 RILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKKLG 661 (714)
T ss_pred eEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHhcC
Confidence 5999999986433446889999999999986331 57888888 5554444445666666665332
Q ss_pred hhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhh
Q psy3863 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172 (285)
Q Consensus 120 r~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~ 172 (285)
. ++.+|++.|=.+..+.++ +++. ++|.++++.. ++.++|+..
T Consensus 662 ~-------~~v~vl~GG~~~~~~~~~-l~~a-GvD~~i~~g~--d~~~~L~~l 703 (714)
T PRK09426 662 R-------EDIMVVVGGVIPPQDYDF-LYEA-GVAAIFGPGT--VIADAAIDL 703 (714)
T ss_pred C-------CCcEEEEeCCCChhhHHH-HHhC-CCCEEECCCC--CHHHHHHHH
Confidence 1 345677777655434444 3443 7999998876 677776543
No 133
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=87.71 E-value=1.2 Score=42.81 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=29.4
Q ss_pred EEEEEccccCCCCCcccccCccccCC--CCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGRE--RSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~~--~Sr~~~~IV~e~~~ 50 (285)
.-||-|=- |+++|+||..+...|+. +.+.++.+++|++.
T Consensus 5 ~lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~ 45 (374)
T PRK05799 5 SLYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRN 45 (374)
T ss_pred EEEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHh
Confidence 35666666 99999999999887653 23358889999875
No 134
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=87.27 E-value=1.1 Score=42.54 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCeEEEEEccccCCCCCcccccCccccC
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGR 35 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~ 35 (285)
-+.++.+.+..||+.+|.||-.+...|.
T Consensus 86 yp~rvll~vT~~C~~~Cr~C~r~~~~~~ 113 (321)
T TIGR03822 86 YPDRVLLKPVHVCPVYCRFCFRREMVGP 113 (321)
T ss_pred CCCEEEEEecCCCCCcCcCCCchhhcCC
Confidence 3468899999999999999998876664
No 135
>PTZ00413 lipoate synthase; Provisional
Probab=85.70 E-value=3.3 Score=40.82 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=45.9
Q ss_pred eEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCceeeEEEeccc--cCcchhHHHHHHH
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDKVYFEVFGCQ--MNVNDTEVVWSIL 76 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~kv~i~TyGC~--~N~~dsell~~lL 76 (285)
+-.|+-..+.|...|.||.+...+ +.--.+++++++.++. .|.+..+.|-|-+ ++....+.+.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I 219 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCV 219 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHH
Confidence 678899999999999999997533 2344577888776654 5667667788754 4444455555444
No 136
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=85.33 E-value=2.6 Score=39.81 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=25.4
Q ss_pred EEEEccccCCCCCcccccCcc----ccCCCCCChhhhhhHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFT----RGRERSRPMQSILDEVR 49 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~----rG~~~Sr~~~~IV~e~~ 49 (285)
-.|.+.++||.+|.||-.+.. .-+....+.+++.+-+.
T Consensus 12 l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~ 53 (334)
T TIGR02666 12 LRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVR 53 (334)
T ss_pred EEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHH
Confidence 345678999999999977641 11334567777765543
No 137
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=85.29 E-value=0.57 Score=44.72 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=27.1
Q ss_pred EccccCCCCCcccccCcccc--C----CCCCChhhhhhHHhh
Q psy3863 15 SIMRGCDNMCTYCIVPFTRG--R----ERSRPMQSILDEVRA 50 (285)
Q Consensus 15 ~i~~GC~~~CsyCiip~~rG--~----~~Sr~~~~IV~e~~~ 50 (285)
+...||+++|-||.-|.... . .+-.++++|++++..
T Consensus 63 P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~ 104 (322)
T PRK13762 63 PVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIK 104 (322)
T ss_pred chhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHH
Confidence 34568999999999987543 1 346678999999854
No 138
>PRK09234 fbiC FO synthase; Reviewed
Probab=84.46 E-value=2.2 Score=45.91 Aligned_cols=64 Identities=9% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~ 77 (285)
..|..+.+|.+.|.||....-.+ .....++++|++++++ .|.+ +.+. -|.+-+ .+.+.+.++++
T Consensus 528 ~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~-gG~~p~-~~~~~y~~lir 597 (843)
T PRK09234 528 RNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQ-GGIHPE-LPGTGYADLVR 597 (843)
T ss_pred eceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEe-cCCCCC-cCHHHHHHHHH
Confidence 34567999999999999875432 3455799999999866 4543 5555 354332 34445444443
No 139
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.15 E-value=18 Score=30.86 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=66.5
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.+|-+.+.|-+--..-...++.+|+..||+.... .+++|+|++ |+.-..-..-+-+.+..+++.
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgv--Ssl~g~h~~l~~~lve~lre~ 90 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGV--SSLDGGHLTLVPGLVEALREA 90 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEE--EeccchHHHHHHHHHHHHHHh
Confidence 3577788885433345788999999999987622 356677766 455454454455555555533
Q ss_pred hhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
.. .+..+++.|=.+..+..++ +++ ++|-|+++.. .+.+.++.
T Consensus 91 G~-------~~i~v~~GGvip~~d~~~l-~~~-G~~~if~pgt--~~~~~~~~ 132 (143)
T COG2185 91 GV-------EDILVVVGGVIPPGDYQEL-KEM-GVDRIFGPGT--PIEEALSD 132 (143)
T ss_pred CC-------cceEEeecCccCchhHHHH-HHh-CcceeeCCCC--CHHHHHHH
Confidence 22 2344577777776555554 444 7899999954 46665544
No 140
>PRK05927 hypothetical protein; Provisional
Probab=83.33 E-value=1.7 Score=42.00 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=40.1
Q ss_pred EEccccCCCCCcccccCccccCC--CCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHh
Q psy3863 14 VSIMRGCDNMCTYCIVPFTRGRE--RSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 14 v~i~~GC~~~CsyCiip~~rG~~--~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~ 77 (285)
|.++.-|++.|.||......+.. .-.+.++|++.+++ .|.+ +.+ +-|.. ...+.|++.++++
T Consensus 49 i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i-~gG~~-p~~~~e~~~~~i~ 116 (350)
T PRK05927 49 PNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLL-QGGVH-PQLGIDYLEELVR 116 (350)
T ss_pred CccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEE-eCCCC-CCCCHHHHHHHHH
Confidence 66799999999999876533321 24678999888765 4654 444 55544 3345555555554
No 141
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=82.84 E-value=2.9 Score=39.82 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=29.4
Q ss_pred CCeEEEEEccccCCCCCcccccCcccc-CCCCCChhh---hhhHHhhcC
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRG-RERSRPMQS---ILDEVRALS 52 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG-~~~Sr~~~~---IV~e~~~~g 52 (285)
-+...++.+...||.+|.||-.+.... +....+.++ +++++.+.|
T Consensus 5 ~P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g 53 (358)
T TIGR02109 5 PPLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELG 53 (358)
T ss_pred CCcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcC
Confidence 457789999999999999998764221 223345554 455554444
No 142
>PRK09234 fbiC FO synthase; Reviewed
Probab=82.15 E-value=2.9 Score=45.12 Aligned_cols=53 Identities=25% Similarity=0.425 Sum_probs=38.7
Q ss_pred EEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhh---cCceeeEEEecccc
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRA---LSDKVYFEVFGCQM 64 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~---~g~kv~i~TyGC~~ 64 (285)
.||+.+..|.+.|.||......+ ...-.++|+|++.+++ .|.+--+.+.|-.-
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P 130 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRP 130 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 57889999999999998864434 2345689999998866 46544567777543
No 143
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=81.87 E-value=1.7 Score=43.35 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=44.8
Q ss_pred CeEEEEEccccCCCCCcccccCcc-----c-c-CCCCCChhhhhhHHhhc-----Cce-eeEEEeccc-cCc-chhHHHH
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFT-----R-G-RERSRPMQSILDEVRAL-----SDK-VYFEVFGCQ-MNV-NDTEVVW 73 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~-----r-G-~~~Sr~~~~IV~e~~~~-----g~k-v~i~TyGC~-~N~-~dsell~ 73 (285)
..|..+.+..|||-+|.||-..+- | | ..+..+++++++.+... +.+ +.|..+|=. +|. ...+.+.
T Consensus 23 ~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~ 102 (442)
T TIGR01290 23 FARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLE 102 (442)
T ss_pred cCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHH
Confidence 368899999999999999987653 2 3 23556889998887652 112 444444543 332 2456666
Q ss_pred HHHhh
Q psy3863 74 SILKS 78 (285)
Q Consensus 74 ~lL~~ 78 (285)
.+.+.
T Consensus 103 ~~~~~ 107 (442)
T TIGR01290 103 LVARQ 107 (442)
T ss_pred HHHHh
Confidence 55554
No 144
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=81.86 E-value=6.4 Score=37.28 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCCeEEEEEccccCCCCCcccccCccc-cCC-CCCChhhhhhHHhhcCce
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTR-GRE-RSRPMQSILDEVRALSDK 54 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~r-G~~-~Sr~~~~IV~e~~~~g~k 54 (285)
.-+....+.+..+||-+|.||-..... ... ...+.+++++.+.+.|..
T Consensus 25 ~~Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e~g~~ 74 (318)
T TIGR03470 25 RFPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDECGAP 74 (318)
T ss_pred CCCCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHHcCCC
Confidence 446788899999999999999764322 111 345778888777665543
No 145
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=81.81 E-value=6 Score=38.01 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCeEEEEEccccCCCCCcccccCccc-cCCCCCChhhh---hhHHhhcC
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTR-GRERSRPMQSI---LDEVRALS 52 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~r-G~~~Sr~~~~I---V~e~~~~g 52 (285)
..+...++.+...||.+|.||-.+... ......+.+++ ++++.+.|
T Consensus 13 ~~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g 62 (378)
T PRK05301 13 GPPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALG 62 (378)
T ss_pred CCCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcC
Confidence 346788999999999999999765432 22345666654 44444444
No 146
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=81.64 E-value=4.6 Score=39.28 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCCeEEE--EEccccCCCCCcccccCccc---cCCCCCChhhhhhHHh
Q psy3863 7 EDSVSAF--VSIMRGCDNMCTYCIVPFTR---GRERSRPMQSILDEVR 49 (285)
Q Consensus 7 ~~~~~a~--v~i~~GC~~~CsyCiip~~r---G~~~Sr~~~~IV~e~~ 49 (285)
.++...| |.|.++||.+|.||--+..- .+..-.+.+++.+.+.
T Consensus 53 ~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~ 100 (373)
T PLN02951 53 FGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAG 100 (373)
T ss_pred CCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHH
Confidence 3444444 46669999999999654211 1123356777766553
No 147
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=81.42 E-value=8.9 Score=37.19 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=31.7
Q ss_pred CcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhc
Q psy3863 129 PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173 (285)
Q Consensus 129 ~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~ 173 (285)
...|++.|=.+...+.++....+ +|+|+.-.....++++++...
T Consensus 102 ~~~v~~GG~~~t~~~~~~~~~~~-~D~iv~GeGE~~~~~~~~~~~ 145 (490)
T COG1032 102 KPLVVVGGPEATENPEPLLDFGP-ADIIVIGEGEETLPELLEALE 145 (490)
T ss_pred CCeEEecCCCcCCCcHHHHhhcC-CCEEEEcCchHHHHHHHHHHh
Confidence 34677777666667778777666 788877777778888887544
No 148
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=80.61 E-value=3.2 Score=39.90 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCCCeEEEE--EccccCCCCCcccccCc--cccCC-CCCChhhhhhHHh---hcCc-eeeE------------------E
Q psy3863 6 NEDSVSAFV--SIMRGCDNMCTYCIVPF--TRGRE-RSRPMQSILDEVR---ALSD-KVYF------------------E 58 (285)
Q Consensus 6 ~~~~~~a~v--~i~~GC~~~CsyCiip~--~rG~~-~Sr~~~~IV~e~~---~~g~-kv~i------------------~ 58 (285)
..++...|+ .|.+-||.+|.||-=.- +...- .-.++|+|..=++ ..|. ||-+ .
T Consensus 5 ~~gR~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~ 84 (322)
T COG2896 5 RFGRPVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLA 84 (322)
T ss_pred ccCCEeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHh
Confidence 344455554 45689999999994322 11111 1224666644332 2332 2221 1
Q ss_pred E-----eccccCcchhHHHHHHHhhCCeeec
Q psy3863 59 V-----FGCQMNVNDTEVVWSILKSSGYSKV 84 (285)
Q Consensus 59 T-----yGC~~N~~dsell~~lL~~~G~~~v 84 (285)
. ..-.-|-......++-|+.+|+.++
T Consensus 85 ~~~~~~islTTNG~~L~~~a~~Lk~AGl~rV 115 (322)
T COG2896 85 RLGIRDLSLTTNGVLLARRAADLKEAGLDRV 115 (322)
T ss_pred hcccceEEEecchhhHHHHHHHHHHcCCcEE
Confidence 1 1112355777888889999999887
No 149
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=80.49 E-value=1.7 Score=35.21 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=13.0
Q ss_pred CeEEEEEccccCCCCCcccccCcccc
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTRG 34 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~rG 34 (285)
+.+..+- ..|||.+|.||..+....
T Consensus 5 g~~~~~~-t~~Cnl~C~yC~~~~~~~ 29 (139)
T PF13353_consen 5 GIRVVLF-TNGCNLRCKYCFNSEIWK 29 (139)
T ss_dssp SCEEEEE-EC--SB--TT-TTCCCS-
T ss_pred CEEEEEE-cCcccccCcCcCCcccCc
Confidence 3445555 778999999998776553
No 150
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=80.28 E-value=2.5 Score=35.94 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=17.4
Q ss_pred CeEEEEEccccCCCCCcccccCcc
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFT 32 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~ 32 (285)
..|+.|=+ .|||.+|.||--|.+
T Consensus 16 G~r~~if~-~GCnl~C~~C~n~~~ 38 (154)
T PRK11121 16 GTRCTLFV-SGCVHQCPGCYNKST 38 (154)
T ss_pred CcEEEEEc-CCCCCcCcCCCChhh
Confidence 34554545 899999999988875
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.14 E-value=14 Score=29.20 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCC-CcEEEEEccchhhhhHHHHhhCCCccEEECCCC
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p-~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~ 161 (285)
.+|+|.| |++.+.. ...+.+.++.+++. .+ +..|++.|=.+...++ .+++. ++|.++.+..
T Consensus 50 ~pdvV~i-S~~~~~~-~~~~~~~i~~l~~~--------~~~~~~i~vGG~~~~~~~~-~~~~~-G~D~~~~~~~ 111 (119)
T cd02067 50 DADAIGL-SGLLTTH-MTLMKEVIEELKEA--------GLDDIPVLVGGAIVTRDFK-FLKEI-GVDAYFGPAT 111 (119)
T ss_pred CCCEEEE-ecccccc-HHHHHHHHHHHHHc--------CCCCCeEEEECCCCChhHH-HHHHc-CCeEEECCHH
Confidence 4687766 5554443 35666666666532 24 6778888876665454 34444 6898888765
No 152
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=80.07 E-value=4.3 Score=40.30 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=36.8
Q ss_pred CeEEEEEccccCCCCCcccccCcc-ccCCCCCC-hhhhhhHHhh---cCceeeEEEeccccCcchhHHHHHHHh
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFT-RGRERSRP-MQSILDEVRA---LSDKVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~-rG~~~Sr~-~~~IV~e~~~---~g~kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
+..-||-|-- |.++|+||..+.. .++.+.+. .+.+++|++. .+.++.-.-+|-.-.....+.|..+++
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l~~~L~~ll~ 124 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTILEDELAKTLE 124 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccCHHHHHHHHH
Confidence 3445555555 9999999998754 33333333 6778888764 344444334442211122344555543
No 153
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=79.87 E-value=3.2 Score=40.56 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=38.9
Q ss_pred EEEEEccccCCCCCcccccCccccC--CCCCChhhhhhHHhh---cCceeeEEEeccc
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGR--ERSRPMQSILDEVRA---LSDKVYFEVFGCQ 63 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~--~~Sr~~~~IV~e~~~---~g~kv~i~TyGC~ 63 (285)
..+|....=|.+.|+||...--.|. -.-.++++|.+++++ .|.+--+.+.|..
T Consensus 60 n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~ 117 (370)
T COG1060 60 NRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH 117 (370)
T ss_pred eecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcC
Confidence 4567788999999999987666532 246789999998876 4666555667764
No 154
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=79.77 E-value=7.3 Score=32.90 Aligned_cols=41 Identities=15% Similarity=0.330 Sum_probs=27.0
Q ss_pred eEEEEEccccCCCCCcccccCcccc--CCCCCC---hhhhhhHHhhc
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRG--RERSRP---MQSILDEVRAL 51 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~---~~~IV~e~~~~ 51 (285)
.|..|-+ .|||.+|.||--|.+.- .-...+ ++++++++...
T Consensus 16 ~r~~if~-~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~ 61 (154)
T TIGR02491 16 IRVSLFV-AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN 61 (154)
T ss_pred cEEEEEE-CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc
Confidence 4554444 69999999999987631 113345 67777776554
No 155
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=79.39 E-value=3.7 Score=40.52 Aligned_cols=43 Identities=19% Similarity=0.498 Sum_probs=32.6
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCC---CCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRE---RSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~---~Sr~~~~IV~e~~~ 50 (285)
..+...||-|-- |+..|+||..+...|+. .++.++.+++|++.
T Consensus 37 ~~~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~ 82 (430)
T PRK08208 37 EDALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQ 82 (430)
T ss_pred CCceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHH
Confidence 456678999977 99999999988776542 34467888888765
No 156
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=78.48 E-value=1.3 Score=35.08 Aligned_cols=33 Identities=15% Similarity=0.486 Sum_probs=14.5
Q ss_pred cccCCCCCcccccCccc--cCCCCCChhhhhhHHh
Q psy3863 17 MRGCDNMCTYCIVPFTR--GRERSRPMQSILDEVR 49 (285)
Q Consensus 17 ~~GC~~~CsyCiip~~r--G~~~Sr~~~~IV~e~~ 49 (285)
..+||.+|.||..+... ......+.+++.+.+.
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~ 39 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIID 39 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHH
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHH
Confidence 57999999999975532 2345556666655553
No 157
>PRK08444 hypothetical protein; Provisional
Probab=75.76 E-value=5.5 Score=38.57 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.9
Q ss_pred EEEEccccCCCCCcccccCcccc--CCCCCChhhhhhHHhh---cCce-eeEEEeccccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRG--RERSRPMQSILDEVRA---LSDK-VYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG--~~~Sr~~~~IV~e~~~---~g~k-v~i~TyGC~~N~~dsell~~lL~ 77 (285)
.+|.++.-|.+.|.||....-.+ ...-.++|+|++.+++ .|.+ +.+. -|-.-+ .+.+.+.++++
T Consensus 51 ~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv-~G~~p~-~~~e~y~e~ir 120 (353)
T PRK08444 51 RHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIV-SAHNPN-YGYEWYLEIFK 120 (353)
T ss_pred CCcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEe-ccCCCC-CCHHHHHHHHH
Confidence 34688999999999998854222 1134789999999876 4544 5555 343222 23444444443
No 158
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=75.53 E-value=8.9 Score=37.06 Aligned_cols=67 Identities=24% Similarity=0.442 Sum_probs=44.6
Q ss_pred eEEEEEccccC-CCCCcccccCc--ccc--CCCCCChhhhhhHHhh---cC-ceeeEEEeccccCcchhHHHHHHHh
Q psy3863 10 VSAFVSIMRGC-DNMCTYCIVPF--TRG--RERSRPMQSILDEVRA---LS-DKVYFEVFGCQMNVNDTEVVWSILK 77 (285)
Q Consensus 10 ~~a~v~i~~GC-~~~CsyCiip~--~rG--~~~Sr~~~~IV~e~~~---~g-~kv~i~TyGC~~N~~dsell~~lL~ 77 (285)
..+.|.|..|| +..|.||---. -.| +..-+++++|+++++. .| .++-+.+-|-+ +..+.+.+.++.+
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~ 125 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIK 125 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHH
Confidence 46778888887 99999995433 112 2466788999999866 46 56666666655 4455555555443
No 159
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=69.94 E-value=7 Score=38.81 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=27.9
Q ss_pred eEEEEEccccCCCCCcccccCccccCC---CCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE---RSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~---~Sr~~~~IV~e~~~ 50 (285)
..-||-|=- |+++|+||-.+...+.. +-..++.+++|++.
T Consensus 50 ~~lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~ 92 (455)
T TIGR00538 50 LSLYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIAL 92 (455)
T ss_pred eEEEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHH
Confidence 446666655 99999999988765432 22347888888765
No 160
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=69.84 E-value=8.8 Score=36.30 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccc-cCCCCCChhhhhhHHhhcCce
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTR-GRERSRPMQSILDEVRALSDK 54 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~r-G~~~Sr~~~~IV~e~~~~g~k 54 (285)
..++-.|+-..+=|..+|.||.|...| ..+-.--++.+.+.+++.|-+
T Consensus 67 ~~~tATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP~rvAeaV~~mgLk 115 (306)
T COG0320 67 SRGTATFMILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEAVKDMGLK 115 (306)
T ss_pred cCCceEEeeccchhccCCCccccCCCCCCCCCCchHHHHHHHHHHhCCC
Confidence 356778999999999999999999988 334555566677777776655
No 161
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=69.57 E-value=9.6 Score=37.01 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=41.9
Q ss_pred EEccccCCCCCccccc---CccccCC--CCCChhhhhhHHhh----c--CceeeEEEeccc-cCcchhHHHHHHHhhCCe
Q psy3863 14 VSIMRGCDNMCTYCIV---PFTRGRE--RSRPMQSILDEVRA----L--SDKVYFEVFGCQ-MNVNDTEVVWSILKSSGY 81 (285)
Q Consensus 14 v~i~~GC~~~CsyCii---p~~rG~~--~Sr~~~~IV~e~~~----~--g~kv~i~TyGC~-~N~~dsell~~lL~~~G~ 81 (285)
|.=+.||+.+|-||.| |+.|-|. --..+|-.++.... . |...++-.-|-. +-....++++++-+..|.
T Consensus 111 VRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v 190 (414)
T COG2100 111 VRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGV 190 (414)
T ss_pred ecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCc
Confidence 4557899999999998 4444332 22244444444322 2 333555444432 234566777776666676
Q ss_pred eecCCCC
Q psy3863 82 SKVNHPR 88 (285)
Q Consensus 82 ~~v~~~e 88 (285)
++++...
T Consensus 191 ~vVSmQT 197 (414)
T COG2100 191 EVVSMQT 197 (414)
T ss_pred eEEEEee
Confidence 6665433
No 162
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=69.11 E-value=7 Score=34.81 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCCChhhhhhHHhhcC-ceeeEEEeccccCcchhHHHHH-----HHhhCCeeecCCCCCCcEEEEeccccccchHHHHH
Q psy3863 36 ERSRPMQSILDEVRALS-DKVYFEVFGCQMNVNDTEVVWS-----ILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109 (285)
Q Consensus 36 ~~Sr~~~~IV~e~~~~g-~kv~i~TyGC~~N~~dsell~~-----lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~ 109 (285)
...-+.+++++-++... --+++.|=||. .|.+.- -++..|+..+.++..||+++|.- +||.+-...+.
T Consensus 13 ~~~~~~~~~~~w~r~~Slw~~~~~t~cC~-----iE~~a~~~p~yD~eRfGi~~~asPR~ADvllVtG-~Vt~km~~~l~ 86 (189)
T PRK14813 13 VLVTSVDNVLNWARLSSLWPMGFGLACCA-----IEMMATNASNYDLERFGIFPRSSPRQSDLMIVAG-TVTMKMAERVV 86 (189)
T ss_pred eEeeeHHHHHHHHHhCCCceeeeCcccHH-----HHHHHhcccCCCHHHcCCeecCCcccceEEEEec-cCchhhHHHHH
Confidence 44566777777666431 12344443454 333322 24567888889999999987754 55555555554
Q ss_pred HHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 110 ~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
+..++. .+ |...|.+.-|...
T Consensus 87 ~~y~qm---Pe-------PK~VIA~GaCA~s 107 (189)
T PRK14813 87 RLYEQM---PE-------PRYVLSMGSCSNC 107 (189)
T ss_pred HHHHhC---CC-------CCEEEEecccccC
Confidence 444322 12 4445556667654
No 163
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=67.42 E-value=22 Score=32.91 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=39.1
Q ss_pred eEEEEEccccCCCCCcccccCccccCCCCCChhhhhhH----Hhh-c-CceeeEEEeccc-cCcchhHHHHHHHhhCCe
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDE----VRA-L-SDKVYFEVFGCQ-MNVNDTEVVWSILKSSGY 81 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e----~~~-~-g~kv~i~TyGC~-~N~~dsell~~lL~~~G~ 81 (285)
...++--..|||.+|-||.=|-..-.-+..+.+++..+ ... . +-.--..|+|=. +......-+...+++.|+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl 113 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQAEFALDLLRAAKERGL 113 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhhHHHHHHHHHHHHHCCC
Confidence 46777888999999999999987642222333333323 222 1 222333556632 122233444445556676
No 164
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=65.09 E-value=5.1 Score=38.64 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=22.7
Q ss_pred EEEEccccCCCCCcccccCcc-ccCCC-CCC----hhhhhhHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFT-RGRER-SRP----MQSILDEVR 49 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~-rG~~~-Sr~----~~~IV~e~~ 49 (285)
-||-|= =|++.|+||..+.. +++.+ +.+ .+.+.+|++
T Consensus 5 lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~ 47 (375)
T PRK05628 5 VYVHVP-FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELE 47 (375)
T ss_pred EEEEeC-CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 344443 29999999998654 44433 455 555556654
No 165
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=63.79 E-value=21 Score=28.00 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=32.3
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCC-CcEEEEEccchhhhhHHHHhhCCCccEEE
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTF-PLKIGVLGCMAERLKKSLLEKEQALDLVA 157 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p-~~~IvVtGC~aq~~~~~l~~~~~~Vd~Vv 157 (285)
..|+|.+ ||+..... .....+.+++ + .+| +.++++.|-.+...++. +.+|+++
T Consensus 50 ~pdiV~i-S~~~~~~~--~~~~~~~~~~---~-----~~p~~~~ivvGG~~~t~~~~~-----~~~d~~~ 103 (125)
T cd02065 50 DADVVGL-SALSTTHM--EAMKLVIEAL---K-----ELGIDIPVVVGGAHPTADPEE-----PKVDAVV 103 (125)
T ss_pred CCCEEEE-ecchHhHH--HHHHHHHHHH---H-----hcCCCCeEEEeCCcCCccccc-----cccceee
Confidence 4687666 55554433 3444444443 3 124 78999999888877664 5667654
No 166
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=63.78 E-value=6.7 Score=35.59 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=30.2
Q ss_pred ceeeEE---EeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEE
Q psy3863 53 DKVYFE---VFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94 (285)
Q Consensus 53 ~kv~i~---TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADvii 94 (285)
+.||+. |-+.++ .....|...|...||+++++|++|..|+
T Consensus 22 rtVyv~vrNTSd~~~--~l~~~i~~~L~~kGY~vv~~P~~A~Y~l 64 (215)
T PF05818_consen 22 RTVYVQVRNTSDKDI--NLESQIISALQAKGYQVVDDPDEAHYWL 64 (215)
T ss_pred ceEEEEEecCCCCcc--chHHHHHHHHHHCCCEEecChhhCeEEE
Confidence 346652 334333 5777888999999999999999999765
No 167
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=62.57 E-value=12 Score=37.19 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCeEEEEEccccCCCCCcccccCcc--ccCCCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFT--RGRERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~--rG~~~Sr~~~~IV~e~~~ 50 (285)
.+...||-|=- |.++|+||-.... ++..+.+-++.+++|++.
T Consensus 60 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~ 103 (449)
T PRK09058 60 RKRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAM 103 (449)
T ss_pred CceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHH
Confidence 45678988888 9999999986542 344556678888888765
No 168
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=60.70 E-value=22 Score=33.64 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=42.3
Q ss_pred eEEEEEccccCCCCCcccccCccccCC-CCC----ChhhhhhHHhh----cCceeeEEEeccccCcch--------hHHH
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE-RSR----PMQSILDEVRA----LSDKVYFEVFGCQMNVND--------TEVV 72 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~-~Sr----~~~~IV~e~~~----~g~kv~i~TyGC~~N~~d--------sell 72 (285)
....+..-.||.+.|.||=+....+.. .+. ..+.+++.+.. .+.+......|+.-..+- ...+
T Consensus 29 ~~y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~i 108 (297)
T COG1533 29 FDYTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKI 108 (297)
T ss_pred CceecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHH
Confidence 466788889999999999888776655 342 22334444433 234555555666443322 3344
Q ss_pred HHHHhhCCe
Q psy3863 73 WSILKSSGY 81 (285)
Q Consensus 73 ~~lL~~~G~ 81 (285)
.+++...|+
T Consensus 109 lei~~~~~~ 117 (297)
T COG1533 109 LEILLKYGF 117 (297)
T ss_pred HHHHHHcCC
Confidence 444555554
No 169
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=60.68 E-value=11 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=30.2
Q ss_pred chhHHHHHHHh-hCCeeec--C--------CCCCCcEEEEeccccccchHHHHHHHHHHHH
Q psy3863 67 NDTEVVWSILK-SSGYSKV--N--------HPREADVILVMTCAIRENAEGKVWDRLRFYR 116 (285)
Q Consensus 67 ~dsell~~lL~-~~G~~~v--~--------~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~ 116 (285)
.-.+.|+.+|+ ..||+.+ + +.+.+|+||+|+|. ...-...-++.|.++-
T Consensus 19 ~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~-~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 19 AAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG-GDELTDEQRAALRDYV 78 (217)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS-CCGS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC-CCcCCHHHHHHHHHHH
Confidence 34678888888 7788775 2 24679999999998 2123444455555554
No 170
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=58.04 E-value=24 Score=33.11 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=38.5
Q ss_pred EEEEccccCCCC--------CcccccCccccCCC---CCChhhhhhHHhh---c--CceeeEEEeccccCc-chhHHHHH
Q psy3863 12 AFVSIMRGCDNM--------CTYCIVPFTRGRER---SRPMQSILDEVRA---L--SDKVYFEVFGCQMNV-NDTEVVWS 74 (285)
Q Consensus 12 a~v~i~~GC~~~--------CsyCiip~~rG~~~---Sr~~~~IV~e~~~---~--g~kv~i~TyGC~~N~-~dsell~~ 74 (285)
..|-..-+|||+ |+||-. +-.|+.+ -+|.++|.+++.+ . ..+.++..||---|+ ...+.+.+
T Consensus 20 ~~~~~g~~cpnrdg~~~~~gC~FC~~-~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~ 98 (302)
T TIGR01212 20 ITLHGGFSCPNRDGTKGRGGCTFCND-ASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKE 98 (302)
T ss_pred eecCCCCCCCCCCCCCCCCCcccCCC-CCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHH
Confidence 445556789995 999975 4445555 4567777666544 1 122334444433344 44567777
Q ss_pred HHhhC
Q psy3863 75 ILKSS 79 (285)
Q Consensus 75 lL~~~ 79 (285)
+++..
T Consensus 99 l~~~i 103 (302)
T TIGR01212 99 MYEQA 103 (302)
T ss_pred HHHHH
Confidence 66543
No 171
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=57.38 E-value=20 Score=35.57 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=26.8
Q ss_pred eEEEEEccccCCCCCcccccCccccCC---CCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE---RSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~---~Sr~~~~IV~e~~~ 50 (285)
..-||-|=- |+.+|+||-.+...++. ..+.++.+++|++.
T Consensus 50 ~~LYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~ 92 (453)
T PRK09249 50 LSLYVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIAL 92 (453)
T ss_pred eEEEEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHH
Confidence 345676644 99999999877654422 22456788888763
No 172
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=57.16 E-value=9.7 Score=36.50 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCCCCcccccCccc-c-CCCCCChhhhhhHHhh
Q psy3863 20 CDNMCTYCIVPFTR-G-RERSRPMQSILDEVRA 50 (285)
Q Consensus 20 C~~~CsyCiip~~r-G-~~~Sr~~~~IV~e~~~ 50 (285)
|+.+|+||-.+..- + ..+.+.++.+++|++.
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~ 42 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKF 42 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHH
Confidence 99999999876542 2 2345577888888774
No 173
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=57.15 E-value=15 Score=31.27 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=44.3
Q ss_pred CChhhhhhHHhhcCceeeEEEec--cccCcchhHHHHHH-----HhhCC-eeecCCCCCCcEEEEeccccccchHHHHHH
Q psy3863 39 RPMQSILDEVRALSDKVYFEVFG--CQMNVNDTEVVWSI-----LKSSG-YSKVNHPREADVILVMTCAIRENAEGKVWD 110 (285)
Q Consensus 39 r~~~~IV~e~~~~g~kv~i~TyG--C~~N~~dsell~~l-----L~~~G-~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~ 110 (285)
-+.+++++-.+.. .+|+..|| | -+.|.+..+ ++..| ...+.++..||+++|.- +||.+. ..
T Consensus 5 ~~~~~~~~~~r~~--s~w~~~~~t~c----C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllVtG-~vt~~~----~~ 73 (145)
T TIGR01957 5 TTVDKLLNWGRSN--SLWPLTFGLAC----CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAG-TVTKKM----AP 73 (145)
T ss_pred ccHHHHHhhhhcC--CceeeeeCccH----HHHHHHHccCccccHHHhCCceecCCCCcceEEEEec-CCcHHH----HH
Confidence 3455555544432 24443333 4 355555544 24557 66678899999987654 555553 33
Q ss_pred HHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 111 ~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
.|+++... |. +|...|.+.-|...
T Consensus 74 ~l~~~~e~--~p----~pk~VIA~GsCA~~ 97 (145)
T TIGR01957 74 ALRRLYDQ--MP----EPKWVISMGACANS 97 (145)
T ss_pred HHHHHHHh--cc----CCceEEEecceeec
Confidence 33333211 01 14455666667665
No 174
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=55.63 E-value=87 Score=28.54 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=50.3
Q ss_pred hhhhhHHhhcCceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHH--HHHHHHHHHhh
Q psy3863 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV--WDRLRFYRSMK 119 (285)
Q Consensus 42 ~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~--~~~I~~l~~~k 119 (285)
.+-++++++.|..+++..+|- .+.+.-..-|++.|. |++++.+= .-..+.-+. +..|.+.+++.
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~----~~~~~~~~~l~~~gv---------d~~~~H~g-~D~q~~G~~~~~~~l~~ik~~~ 161 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGV----WDPEQRAKWLKELGV---------DQVILHRG-RDAQAAGKSWGEDDLEKIKKLS 161 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecC----CCHHHHHHHHHHhCC---------CEEEEEec-ccHhhcCCCccHHHHHHHHHhh
Confidence 344555566677788877763 456666666776773 45555441 111111111 34444444322
Q ss_pred hhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccE-EEC
Q psy3863 120 QIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL-VAG 158 (285)
Q Consensus 120 r~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~-VvG 158 (285)
. ++.+|.|+|=.....-+.+.... +|+ |+|
T Consensus 162 ~-------~g~~vAVaGGI~~~~i~~~~~~~--~~ivIvG 192 (217)
T COG0269 162 D-------LGAKVAVAGGITPEDIPLFKGIG--ADIVIVG 192 (217)
T ss_pred c-------cCceEEEecCCCHHHHHHHhcCC--CCEEEEC
Confidence 2 35799999988765555543333 444 444
No 175
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=54.48 E-value=69 Score=30.54 Aligned_cols=97 Identities=24% Similarity=0.315 Sum_probs=50.2
Q ss_pred EEEEEccccCCCC--------CcccccCccccCCCCCChhhhhhHHhh---------cCceeeEEEeccccCc-chhHHH
Q psy3863 11 SAFVSIMRGCDNM--------CTYCIVPFTRGRERSRPMQSILDEVRA---------LSDKVYFEVFGCQMNV-NDTEVV 72 (285)
Q Consensus 11 ~a~v~i~~GC~~~--------CsyCiip~~rG~~~Sr~~~~IV~e~~~---------~g~kv~i~TyGC~~N~-~dsell 72 (285)
..-|-..-.|||+ |+||..-. +|..-.-+..+|..++++ ...+ |+..|=---|+ +..|.|
T Consensus 25 Kv~ld~GF~CPNRDGti~rGGCtFC~~~g-~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyApvevL 102 (312)
T COG1242 25 KVTLDGGFSCPNRDGTIGRGGCTFCSVAG-SGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAPVEVL 102 (312)
T ss_pred EEeccCCCCCCCCCCcccCCceeeecCCC-CCccccCcccCHHHHHHHHHHHHHHhhcCCc-EEEEEeccccccCcHHHH
Confidence 3344455679987 99996532 233333333333333222 1223 44433222455 456777
Q ss_pred HHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHH
Q psy3863 73 WSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYR 116 (285)
Q Consensus 73 ~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~ 116 (285)
++..+.+ .+++|||-|.-=|=-+=..+.+...|..+.
T Consensus 103 re~ye~a-------L~~~~VVGLsIgTRPDClpd~VldlL~e~~ 139 (312)
T COG1242 103 REMYEQA-------LSEAGVVGLSIGTRPDCLPDDVLDLLAEYN 139 (312)
T ss_pred HHHHHHH-------hCcCCeeEEeecCCCCCCcHHHHHHHHHHh
Confidence 7776543 234566555543333334677788877775
No 176
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=54.38 E-value=12 Score=37.73 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=27.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCcc--ccC-CC-CCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFT--RGR-ER-SRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~--rG~-~~-Sr~~~~IV~e~~~ 50 (285)
..+..-||-|- -|+.+|+||..+.. .+. .. ..-.+.+++|++.
T Consensus 161 ~~~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~ 207 (488)
T PRK08207 161 KNEVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEE 207 (488)
T ss_pred CCceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 34455677776 59999999998864 221 11 2235777777654
No 177
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=52.41 E-value=34 Score=29.13 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=23.4
Q ss_pred HhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHH
Q psy3863 76 LKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115 (285)
Q Consensus 76 L~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l 115 (285)
+++.|...+.++-.||++++.- .||. +++..++++
T Consensus 36 aErfgI~~v~sPRhADiLlVTG-~vT~----~~~e~lkk~ 70 (148)
T COG3260 36 AERFGIKVVNSPRHADILLVTG-AVTR----QMREPLKKA 70 (148)
T ss_pred hHHheeEEeCCCccccEEEEec-cccH----HHHHHHHHH
Confidence 4567999999999999976543 4444 444444443
No 178
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.67 E-value=1.3e+02 Score=29.22 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=50.8
Q ss_pred CCCChhhhhhHHhhcC-c--eeeEEEeccccCcchhHHHHHHHhh-CCeeecCCCCCCcEEEEeccccccchHHHHHHHH
Q psy3863 37 RSRPMQSILDEVRALS-D--KVYFEVFGCQMNVNDTEVVWSILKS-SGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112 (285)
Q Consensus 37 ~Sr~~~~IV~e~~~~g-~--kv~i~TyGC~~N~~dsell~~lL~~-~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I 112 (285)
|..++++-++.++... . ......-| .+..|.|.+..+++. .| +|+|+|.+=- --.+.+.+.|
T Consensus 77 k~~~~e~~~~fv~~~~~~~~~~~~vavG--~~~~d~er~~~L~~~~~g---------~D~iviD~Ah---Ghs~~~i~~i 142 (346)
T PRK05096 77 KHYSVEEWAAFVNNSSADVLKHVMVSTG--TSDADFEKTKQILALSPA---------LNFICIDVAN---GYSEHFVQFV 142 (346)
T ss_pred cCCCHHHHHHHHHhccccccceEEEEec--CCHHHHHHHHHHHhcCCC---------CCEEEEECCC---CcHHHHHHHH
Confidence 3455666555554321 1 11112445 345677888888764 44 6899888733 2223444555
Q ss_pred HHHHHhhhhhccCCCCCcEEEEEccchhhhhHH-HHhhCCCccEE
Q psy3863 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKS-LLEKEQALDLV 156 (285)
Q Consensus 113 ~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~-l~~~~~~Vd~V 156 (285)
++++ + ..|+.. +++|=++..+..+ |.. .++|.|
T Consensus 143 k~ik---~-----~~P~~~-vIaGNV~T~e~a~~Li~--aGAD~v 176 (346)
T PRK05096 143 AKAR---E-----AWPDKT-ICAGNVVTGEMVEELIL--SGADIV 176 (346)
T ss_pred HHHH---H-----hCCCCc-EEEecccCHHHHHHHHH--cCCCEE
Confidence 5554 3 235545 5567766655543 443 367776
No 179
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=50.03 E-value=19 Score=35.86 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=25.7
Q ss_pred eEEEEEccccCCCCCcccccCccccC-CCCCChhhhhhH
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGR-ERSRPMQSILDE 47 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~-~~Sr~~~~IV~e 47 (285)
-++.+.+..+|+..|.||--...-|. ....+.+++.+.
T Consensus 108 ~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~ 146 (417)
T TIGR03820 108 DRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEG 146 (417)
T ss_pred CEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHH
Confidence 48899999999999999965533243 233445555443
No 180
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=49.14 E-value=22 Score=33.78 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=31.4
Q ss_pred cCCCCCcccccCccccC-C-----CCCChhhhhhHHhh-cCc------eeeEEEecc----ccCcchhHHHHHHHhhCC
Q psy3863 19 GCDNMCTYCIVPFTRGR-E-----RSRPMQSILDEVRA-LSD------KVYFEVFGC----QMNVNDTEVVWSILKSSG 80 (285)
Q Consensus 19 GC~~~CsyCiip~~rG~-~-----~Sr~~~~IV~e~~~-~g~------kv~i~TyGC----~~N~~dsell~~lL~~~G 80 (285)
=|+++|-||.. .+.+ . .-.+.++|.++.+. .|+ ++...|+-- .+..+..|+++. +...|
T Consensus 33 ~Cs~~CvyC~~--G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L~elI~~-~k~~g 108 (296)
T COG0731 33 WCSYNCVYCWR--GRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNLGELIEE-IKKRG 108 (296)
T ss_pred hhcCCCeEEec--ccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccccCHHHHHHH-HHhcC
Confidence 49999999988 2211 1 22334455555444 232 454455532 244566776655 44555
No 181
>PRK09271 flavodoxin; Provisional
Probab=48.27 E-value=70 Score=26.87 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=39.3
Q ss_pred chhHHHHHHHhhCCeeec-------------CCCCCCcEEEEeccccccch-HHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 67 NDTEVVWSILKSSGYSKV-------------NHPREADVILVMTCAIRENA-EGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v-------------~~~e~ADviiiNTCtVr~~A-e~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
..++.|++.|...|++.. .+..++|+|+|=|.|.-... .+.+...+..+..... .++++
T Consensus 16 ~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~-------~~k~~ 88 (160)
T PRK09271 16 EVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIG-------KPPNV 88 (160)
T ss_pred HHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhc-------cCCeE
Confidence 457788888888886541 12345799999998885433 3345555555543211 13467
Q ss_pred EEEccc
Q psy3863 133 GVLGCM 138 (285)
Q Consensus 133 vVtGC~ 138 (285)
+|-|..
T Consensus 89 avfgsg 94 (160)
T PRK09271 89 AVFGTG 94 (160)
T ss_pred EEEecC
Confidence 777764
No 182
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=47.73 E-value=16 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.1
Q ss_pred hhHHHHHHHhhCCeeecCCCCCCcEEE
Q psy3863 68 DTEVVWSILKSSGYSKVNHPREADVIL 94 (285)
Q Consensus 68 dsell~~lL~~~G~~~v~~~e~ADvii 94 (285)
....+...|...||.+++||++|..|+
T Consensus 68 l~~~i~~~L~~kGY~iv~~P~~A~Y~l 94 (243)
T PRK13731 68 LQGKIADAVKAKGYQVVTSPDKAYYWI 94 (243)
T ss_pred HHHHHHHHHHhCCeEEecChhhceeee
Confidence 567788889999999999999999875
No 183
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=47.67 E-value=14 Score=35.08 Aligned_cols=26 Identities=4% Similarity=-0.281 Sum_probs=21.4
Q ss_pred cCc---c--c--cccCCcccccChHHHHhhhhc
Q psy3863 208 DGR---W--S--IYVDGRWRRKLGQQMVDGRSM 233 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~ 233 (285)
+|| | | +..+|..++.++++|+++++.
T Consensus 20 n~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~ 52 (336)
T PRK06245 20 YECRNRCGYCTFRRDPGQPSLLSPEEVKEILRR 52 (336)
T ss_pred ccccCCCccCCCcCCCCccCcCCHHHHHHHHHH
Confidence 788 5 7 566788889999999998764
No 184
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=46.80 E-value=14 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=32.0
Q ss_pred EEEEccccCCCCCcccccCccccC-----CCCCChhhhhhHHhhc-CceeeEEEec-cccCcchhHHHHHHHh
Q psy3863 12 AFVSIMRGCDNMCTYCIVPFTRGR-----ERSRPMQSILDEVRAL-SDKVYFEVFG-CQMNVNDTEVVWSILK 77 (285)
Q Consensus 12 a~v~i~~GC~~~CsyCiip~~rG~-----~~Sr~~~~IV~e~~~~-g~kv~i~TyG-C~~N~~dsell~~lL~ 77 (285)
-||-|=- |..+|+||-.+..-+. +..+..+++..+++.. +.++.-.-+| -.=..-+.+.|+.+|+
T Consensus 9 lYiHiPF-C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~ 80 (353)
T PRK05904 9 LYIHIPF-CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLS 80 (353)
T ss_pred EEEEeCC-ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCHHHHHHHHH
Confidence 3444444 9999999987764221 2233345555555432 2333333333 2212223455555554
No 185
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=46.47 E-value=27 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=15.6
Q ss_pred EEEEc-cccCCCCCcccccCc
Q psy3863 12 AFVSI-MRGCDNMCTYCIVPF 31 (285)
Q Consensus 12 a~v~i-~~GC~~~CsyCiip~ 31 (285)
.++.. +.+||.+|.||--+.
T Consensus 6 ~~~~~~t~~CNl~C~yC~~~~ 26 (370)
T PRK13758 6 LLIKPASSGCNLKCTYCFYHS 26 (370)
T ss_pred EEEecCCCCcCCCCcccCCcC
Confidence 34444 589999999998875
No 186
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=45.99 E-value=27 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=28.1
Q ss_pred hHHHHHHHhhCCeeecCCCCCCcEEEEeccccccch
Q psy3863 69 TEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA 104 (285)
Q Consensus 69 sell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~A 104 (285)
.+++.....+.|.++++++.+||++|+---++-+.+
T Consensus 20 ~~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~ 55 (103)
T COG3925 20 HTVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS 55 (103)
T ss_pred HHHHHHHHHHCCCeeeCCCCcccEEEEeccccCCCc
Confidence 355566667889999999999999998876665543
No 187
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=45.83 E-value=69 Score=32.51 Aligned_cols=52 Identities=27% Similarity=0.248 Sum_probs=37.8
Q ss_pred CcchhHHHHHHHhhCCeeecCCCCCCcEEE-Eecccccc--------------chHHHHHHHHHHHH
Q psy3863 65 NVNDTEVVWSILKSSGYSKVNHPREADVIL-VMTCAIRE--------------NAEGKVWDRLRFYR 116 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v~~~e~ADvii-iNTCtVr~--------------~Ae~k~~~~I~~l~ 116 (285)
+....+.+++.+...|...++++++||+++ |||..-+. ..-..+.+.|+.+.
T Consensus 276 d~pl~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l 342 (497)
T PF13552_consen 276 DRPLGESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYL 342 (497)
T ss_pred CCCHHHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHH
Confidence 345678999999999999999999999764 67764443 23355666666554
No 188
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=45.48 E-value=32 Score=30.24 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCCChhhhhhHHhhcCceeeEEEeccccCcchhHHHHHH-----HhhCCeeecCCCCCCcEEEEeccccccchHHHHHHH
Q psy3863 37 RSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSI-----LKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111 (285)
Q Consensus 37 ~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~l-----L~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~ 111 (285)
..-+.+++++-.+. ..+|..+||+ |=-+.|++.-. ++..|+..+.++..||+++|. =+|+.+-...+.+.
T Consensus 17 ~~~~~~~~~~w~r~--~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlVt-G~vT~km~~~l~~~ 91 (173)
T PRK14818 17 HTSQLDNLINLARA--SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA-GTLTYKMAERARLL 91 (173)
T ss_pred ehhhHHHHHHHHhh--CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEEe-CcCccccHHHHHHH
Confidence 44455666554433 2356666652 11355554333 456788889999999997664 35555554444433
Q ss_pred HHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 112 I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
..+. . .|...|.+..|...
T Consensus 92 yeqm---P-------ePK~VIA~G~CA~s 110 (173)
T PRK14818 92 YDQM---P-------EPKYVISMGSCSNC 110 (173)
T ss_pred HHhC---C-------CCCEEEEecccccc
Confidence 3322 1 24555666667665
No 189
>PRK13695 putative NTPase; Provisional
Probab=44.02 E-value=1e+02 Score=25.85 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=42.7
Q ss_pred CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEc-cchhhhhHHHHhhCCCcc-EEECCCCcCC
Q psy3863 87 PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG-CMAERLKKSLLEKEQALD-LVAGPDSYKD 164 (285)
Q Consensus 87 ~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtG-C~aq~~~~~l~~~~~~Vd-~VvG~~~~~~ 164 (285)
.+.+|+++++-+...+..+.++++.|.++... +...|+|+- ...+...+++. .++++- +.+-.++.+.
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---------~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~~~~~r~~ 163 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLDS---------EKPVIATLHRRSVHPFVQEIK-SRPGGRVYELTPENRDS 163 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHhC---------CCeEEEEECchhhHHHHHHHh-ccCCcEEEEEcchhhhh
Confidence 35789999999988888888888888887521 123444443 33333444543 344432 2344455555
Q ss_pred HHHHH
Q psy3863 165 LPRLL 169 (285)
Q Consensus 165 l~e~v 169 (285)
+++-|
T Consensus 164 ~~~~~ 168 (174)
T PRK13695 164 LPFEI 168 (174)
T ss_pred HHHHH
Confidence 55443
No 190
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=43.13 E-value=8.5 Score=36.73 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=24.9
Q ss_pred ccCCCCCcccccCccc----cCC-CCCChhhhhhHHhhcCce-eeEE
Q psy3863 18 RGCDNMCTYCIVPFTR----GRE-RSRPMQSILDEVRALSDK-VYFE 58 (285)
Q Consensus 18 ~GC~~~CsyCiip~~r----G~~-~Sr~~~~IV~e~~~~g~k-v~i~ 58 (285)
.||+.+|-||+=+-.. |+. .-+...+|+.+.+..|.+ +++.
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~V 172 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFV 172 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeec
Confidence 5999999999866432 432 334445555555555543 5544
No 191
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=42.76 E-value=93 Score=28.61 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhh---hhhHHhhcC-ceeeEEEec
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQS---ILDEVRALS-DKVYFEVFG 61 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~---IV~e~~~~g-~kv~i~TyG 61 (285)
..+....+.+..-||-+|.||-.........-...++ ++.++.+.| ..+-+.+.|
T Consensus 16 ~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gG 74 (347)
T COG0535 16 KPPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGG 74 (347)
T ss_pred cCCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCC
Confidence 4566778889999999999998777754111222222 345555555 443333334
No 192
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=41.66 E-value=76 Score=31.52 Aligned_cols=42 Identities=17% Similarity=0.449 Sum_probs=26.7
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCC---CChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERS---RPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~S---r~~~~IV~e~~~ 50 (285)
.+..-||-|=- |+++|+||-.......... .-.+.+++|++.
T Consensus 49 ~~~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~ 93 (453)
T PRK13347 49 EPVSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRL 93 (453)
T ss_pred CceEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHH
Confidence 34567888888 9999999975543221111 124677777763
No 193
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=41.20 E-value=1.1e+02 Score=25.74 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~ 168 (285)
.||++++--.|+-+.+=+.+++..+ +.+.+++.|=-++..++-+++ -+||.+.|.. ..+...+
T Consensus 62 ~aD~viiTGsTlvN~Ti~~iL~~~~--------------~~~~vil~GpS~~~~P~~l~~--~Gv~~v~g~~-v~d~~~~ 124 (147)
T PF04016_consen 62 WADVVIITGSTLVNGTIDDILELAR--------------NAREVILYGPSAPLHPEALFD--YGVTYVGGSR-VVDPEKV 124 (147)
T ss_dssp G-SEEEEECHHCCTTTHHHHHHHTT--------------TSSEEEEESCCGGS-GGGGCC--TT-SEEEEEE-ES-HHHH
T ss_pred cCCEEEEEeeeeecCCHHHHHHhCc--------------cCCeEEEEecCchhhHHHHHh--CCCCEEEEEE-EeCHHHH
Confidence 4899999999999988766664432 145889999888888876543 3699888876 4455555
Q ss_pred HHhhccC
Q psy3863 169 LALTYSN 175 (285)
Q Consensus 169 v~~~~~~ 175 (285)
++....|
T Consensus 125 ~~~i~~G 131 (147)
T PF04016_consen 125 LRAISEG 131 (147)
T ss_dssp HHHHCTT
T ss_pred HHHHHcC
Confidence 5444333
No 194
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.92 E-value=1e+02 Score=30.07 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=39.0
Q ss_pred ccCCCCCeEEEEEccccCCCCCcccccCcc-ccC-CCCCC-------hhhhhhHHhh---cCceeeEEEecccc-Ccchh
Q psy3863 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFT-RGR-ERSRP-------MQSILDEVRA---LSDKVYFEVFGCQM-NVNDT 69 (285)
Q Consensus 3 ~~~~~~~~~a~v~i~~GC~~~CsyCiip~~-rG~-~~Sr~-------~~~IV~e~~~---~g~kv~i~TyGC~~-N~~ds 69 (285)
+.+...+..-||-|=- |..+|+||-.+.. -|+ .+.++ .+.+++|++. .+..+....+|-.- ..-..
T Consensus 4 ~~~~~~~~~lYiHiPF-C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~ 82 (400)
T PRK07379 4 VGFILLPTSAYIHIPF-CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV 82 (400)
T ss_pred CCCCCCccEEEEEecc-ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH
Confidence 3455555566666665 9999999998753 232 22222 3456666654 22334444454221 22234
Q ss_pred HHHHHHHh
Q psy3863 70 EVVWSILK 77 (285)
Q Consensus 70 ell~~lL~ 77 (285)
+.+.++++
T Consensus 83 ~~l~~ll~ 90 (400)
T PRK07379 83 EQLERILT 90 (400)
T ss_pred HHHHHHHH
Confidence 55555553
No 195
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=40.47 E-value=44 Score=28.49 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=17.8
Q ss_pred CCCCcEEEEeccccccchH--HHHHHHHHHH
Q psy3863 87 PREADVILVMTCAIRENAE--GKVWDRLRFY 115 (285)
Q Consensus 87 ~e~ADviiiNTCtVr~~Ae--~k~~~~I~~l 115 (285)
.+.||+||||-+---..++ +++.+.|+++
T Consensus 140 i~~ADvIvlnK~D~~~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 140 IAFADVIVLNKIDLVSDEQKIERVREMIREL 170 (178)
T ss_dssp HCT-SEEEEE-GGGHHHH--HHHHHHHHHHH
T ss_pred chhcCEEEEeccccCChhhHHHHHHHHHHHH
Confidence 3569999999987666652 4555555554
No 196
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=40.21 E-value=44 Score=32.93 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=46.6
Q ss_pred eeEEEeccccCcchhHHHHHHHhhCC--eeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSILKSSG--YSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL~~~G--~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+.-.+-||.......-.+........ ...+.+..+.|+| --+++++.+.|.++.+ + .+|+...
T Consensus 27 l~Hgp~GC~~~~~~~~~~~~~~~~~~~~~~~~T~l~E~d~V--------~Gg~~kL~~~I~~~~~--~-----~~p~~I~ 91 (427)
T cd01971 27 IIHSGPGCASKQSGAVAFGNGYQGGGYGVAPCTNATETEIV--------FGGEDRLRELIKSTLS--I-----IDADLFV 91 (427)
T ss_pred EEeCCcccccchhhhhhhcccccCCCCccceecCCCccceE--------eCCHHHHHHHHHHHHH--h-----CCCCEEE
Confidence 33467788755432112222233333 3335667777775 2458999999988752 2 2377888
Q ss_pred EEEccchhhhhHH
Q psy3863 133 GVLGCMAERLKKS 145 (285)
Q Consensus 133 vVtGC~aq~~~~~ 145 (285)
+++.|.+...++.
T Consensus 92 V~ttC~~~~IGdD 104 (427)
T cd01971 92 VLTGCIAEIIGDD 104 (427)
T ss_pred EEcCCcHHHhhcC
Confidence 9999999887654
No 197
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.75 E-value=27 Score=35.47 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=45.3
Q ss_pred EEeccccCcchhHHHHHHHhh-CCeeecC-CCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEE
Q psy3863 58 EVFGCQMNVNDTEVVWSILKS-SGYSKVN-HPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVL 135 (285)
Q Consensus 58 ~TyGC~~N~~dsell~~lL~~-~G~~~v~-~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVt 135 (285)
..-||. -...+..++.. ..+..++ +..++|+++ .-.++|+.+.|.+..+ + .+|++.+|++
T Consensus 32 ~p~Gc~----~~~~~~~~~~~~~~~~p~tt~~~e~~vv~-------~Gg~~kL~~~I~~~~~--~-----~~P~~I~V~t 93 (513)
T CHL00076 32 APLGDD----YFNVMRSMLERERDFTPVTASIVDRHVLA-------RGSQEKVVDNITRKDK--E-----ERPDLIVLTP 93 (513)
T ss_pred CCCCch----hHHHHHhhcccCCCCCccccccchhhhhc-------cchHHHHHHHHHHHHH--h-----cCCCEEEECC
Confidence 466886 33445555544 2355544 666777643 2448999999987642 2 2478999999
Q ss_pred ccchhhhhHH
Q psy3863 136 GCMAERLKKS 145 (285)
Q Consensus 136 GC~aq~~~~~ 145 (285)
+|.+...++.
T Consensus 94 TC~~eiIGDD 103 (513)
T CHL00076 94 TCTSSILQED 103 (513)
T ss_pred CCchhhhhcC
Confidence 9999876544
No 198
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=39.29 E-value=9.4 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=33.8
Q ss_pred cccccCccc-cCCCCCChhhhhhHHhhcCceeeEEEeccccCcc
Q psy3863 25 TYCIVPFTR-GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67 (285)
Q Consensus 25 syCiip~~r-G~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~ 67 (285)
.+|++|... |...|.-++++++-+++.|.++.+..+|-.+--.
T Consensus 2 ei~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe 45 (92)
T PF01910_consen 2 EISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGE 45 (92)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEec
Confidence 478899987 6678888888888888888888888888665433
No 199
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=37.70 E-value=27 Score=33.01 Aligned_cols=26 Identities=4% Similarity=-0.184 Sum_probs=19.7
Q ss_pred cCc---c--c--cccCCccc--ccChHHHHhhhhc
Q psy3863 208 DGR---W--S--IYVDGRWR--RKLGQQMVDGRSM 233 (285)
Q Consensus 208 ~Gc---c--C--~~aRG~~r--S~~~~~iv~~~~~ 233 (285)
+|| | | +..+|..+ ++++++|+++++.
T Consensus 12 n~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~ 46 (322)
T TIGR03550 12 RLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRK 46 (322)
T ss_pred cCcCCCCccCCccccCCCcccccCCHHHHHHHHHH
Confidence 788 5 7 45556654 8999999999875
No 200
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=37.09 E-value=83 Score=29.02 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcC
Q psy3863 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163 (285)
Q Consensus 106 ~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~ 163 (285)
+.+.+.+.+++.. ..+..|+++ -+......++.+++|++|+|+|-+.-.
T Consensus 169 ~~~~~~v~~lr~~--------~~D~II~l~-H~G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 169 EAAQKEADKLKAQ--------GVNKIIALS-HSGYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred HHHHHHHHHHHhc--------CCCEEEEEe-ccCchhHHHHHHcCCCCcEEEeCCcCc
Confidence 3455556555421 145445443 333333456778899999999998643
No 201
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=36.43 E-value=23 Score=28.03 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.3
Q ss_pred ccccCcc-ccCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 26 YCIVPFT-RGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 26 yCiip~~-rG~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
||++|.. -|.+.|.=++++++-+++.|-++.+..+|-.+-
T Consensus 5 isv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IE 45 (97)
T TIGR00106 5 VSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIE 45 (97)
T ss_pred EEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEe
Confidence 7899996 455667767777777777788888888886654
No 202
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=35.92 E-value=26 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=17.7
Q ss_pred CeEEEEE-ccccCCCCCcccccCc
Q psy3863 9 SVSAFVS-IMRGCDNMCTYCIVPF 31 (285)
Q Consensus 9 ~~~a~v~-i~~GC~~~CsyCiip~ 31 (285)
+....+| ++..||.+|+||-...
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~ 35 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLE 35 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcC
Confidence 4556677 5589999999998754
No 203
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=35.75 E-value=52 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.7
Q ss_pred chhHHHHHHHhhCCeeec----CC---------CCCCcEEEEeccc
Q psy3863 67 NDTEVVWSILKSSGYSKV----NH---------PREADVILVMTCA 99 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v----~~---------~e~ADviiiNTCt 99 (285)
.-.+.|+.+|++.||++. ++ +...|+||+..|+
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~ 68 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHI 68 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCC
Confidence 356889999999998864 22 3467999997666
No 204
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=35.59 E-value=37 Score=27.61 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=22.1
Q ss_pred hHHHHHHHhhCCeeecCCCCCCcEEEEecccc
Q psy3863 69 TEVVWSILKSSGYSKVNHPREADVILVMTCAI 100 (285)
Q Consensus 69 sell~~lL~~~G~~~v~~~e~ADviiiNTCtV 100 (285)
...++..|.+.||..+ .+.||++|-=.=.+
T Consensus 41 ~~~v~~~L~~~G~~~~--~~~aDl~V~~~~~~ 70 (151)
T PF13590_consen 41 QDAVEQELAAKGYRRV--PENADLLVSYHYSV 70 (151)
T ss_pred HHHHHHHHHHCCCeec--ccCCCEEEEEEEEE
Confidence 4567777889999998 78899976544333
No 205
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.76 E-value=51 Score=25.34 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.0
Q ss_pred HHHHHHhhCCeeecCC
Q psy3863 71 VVWSILKSSGYSKVNH 86 (285)
Q Consensus 71 ll~~lL~~~G~~~v~~ 86 (285)
-+++.|++.||+.++-
T Consensus 12 ~v~~~L~~~GyeVv~l 27 (80)
T PF03698_consen 12 NVKEALREKGYEVVDL 27 (80)
T ss_pred HHHHHHHHCCCEEEec
Confidence 5678899999998843
No 206
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=33.09 E-value=25 Score=28.23 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=35.3
Q ss_pred cccccCccc-cCCCCCChhhhhhHHhhcCceeeEEEeccccCcchhHHH
Q psy3863 25 TYCIVPFTR-GRERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVV 72 (285)
Q Consensus 25 syCiip~~r-G~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell 72 (285)
++|++|... |.+.|.=++++++.+++.|.++.++.+|--+.-...|+|
T Consensus 6 ~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg~~del~ 54 (100)
T COG0011 6 ELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEGELDELM 54 (100)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEecHHHHH
Confidence 478999985 566788888888888888989888888765544444443
No 207
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=32.60 E-value=67 Score=31.34 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=46.3
Q ss_pred EEeccccCcchhHHHHHHHhhCCe-eecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEc
Q psy3863 58 EVFGCQMNVNDTEVVWSILKSSGY-SKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG 136 (285)
Q Consensus 58 ~TyGC~~N~~dsell~~lL~~~G~-~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtG 136 (285)
..-||..... ..+...+. ..+++..+.|+| --+++++.+.|.++.+. .+|+...++++
T Consensus 26 GPsGCa~~~~------r~l~~~~~~v~sT~L~E~DvV--------FGGeeKL~eaI~ea~e~-------y~P~lI~VvTT 84 (352)
T TIGR03282 26 GPSGCCFRTA------RLLEEDGVRVFTTGMDENDFV--------FGASEKLVKVIRYAEEK-------FKPELIGVVGT 84 (352)
T ss_pred Cchhhhhhhh------hhccCCCCceeccCCCCCceE--------eCcHHHHHHHHHHHHHh-------cCCCEEEEECC
Confidence 5778974322 23333443 445777888875 35789999999988632 24788899999
Q ss_pred cchhhhhHH
Q psy3863 137 CMAERLKKS 145 (285)
Q Consensus 137 C~aq~~~~~ 145 (285)
|++..-++.
T Consensus 85 CvseIIGDD 93 (352)
T TIGR03282 85 CASMIIGED 93 (352)
T ss_pred CchhhccCC
Confidence 999987655
No 208
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=32.37 E-value=28 Score=35.05 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=46.7
Q ss_pred eEEEeccccCcchhHHHHHHHh--hCCeeecCCCCCCcEE-EEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 56 YFEVFGCQMNVNDTEVVWSILK--SSGYSKVNHPREADVI-LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 56 ~i~TyGC~~N~~dsell~~lL~--~~G~~~v~~~e~ADvi-iiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
-.++-||..+.-++ ++.+. +.-|-. .+.+|-||+ .+| .++|+.+.|.++.+. .+|++.+
T Consensus 41 VhGp~~Ca~~~~~~---~g~~~~~~~r~~~-tdl~E~Di~~~~g-------~~~~L~~~i~ei~~~-------~~p~~if 102 (457)
T CHL00073 41 VIGTKTCGYFLQNA---LGVMIFAEPRYAM-AELEEGDISAQLN-------DYEELKRLCLQIKKD-------RNPSVIV 102 (457)
T ss_pred eeccchhhcchhcc---ccCcccCCcccee-cccCchhhhhhcC-------CHHHHHHHHHHHHHh-------CCCCEEE
Confidence 34788897654322 22221 122333 678889996 444 489999999988632 2478899
Q ss_pred EEEccchhhhhH
Q psy3863 133 GVLGCMAERLKK 144 (285)
Q Consensus 133 vVtGC~aq~~~~ 144 (285)
++++|.+..-++
T Consensus 103 v~~TC~t~iIGd 114 (457)
T CHL00073 103 WIGTCTTEIIKM 114 (457)
T ss_pred EEccCcHHhhcc
Confidence 999999987554
No 209
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=30.22 E-value=1.3e+02 Score=24.40 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=39.9
Q ss_pred chhHHHHHHHhhCCeeec-----C-------CCCCCcEEEEecccccc-chHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 67 NDTEVVWSILKSSGYSKV-----N-------HPREADVILVMTCAIRE-NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v-----~-------~~e~ADviiiNTCtVr~-~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
.-.+.|++.|...|.+.. . +.+++|.++|=|.+... .....+...+..+.. .+++++
T Consensus 16 ~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~----------~~k~~a 85 (140)
T TIGR01754 16 EVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY----------KPSNVA 85 (140)
T ss_pred HHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc----------cCCEEE
Confidence 346777777777776542 1 23457999999988733 444567777766532 145777
Q ss_pred EEccchh
Q psy3863 134 VLGCMAE 140 (285)
Q Consensus 134 VtGC~aq 140 (285)
|-|+.-+
T Consensus 86 vfgtgd~ 92 (140)
T TIGR01754 86 IFGTGET 92 (140)
T ss_pred EEEcCCC
Confidence 7777643
No 210
>PLN02428 lipoic acid synthase
Probab=28.95 E-value=86 Score=30.52 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=18.0
Q ss_pred eEEEE--cCc---c--c--cccCCcccccChH--HHHhhh
Q psy3863 203 RSIYV--DGR---W--S--IYVDGRWRRKLGQ--QMVDGR 231 (285)
Q Consensus 203 ~a~~i--~Gc---c--C--~~aRG~~rS~~~~--~iv~~~ 231 (285)
.-|.| +|| | | ++.+|+.++++.+ ++.+.+
T Consensus 103 aT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v 142 (349)
T PLN02428 103 ATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAI 142 (349)
T ss_pred EEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHH
Confidence 34545 889 5 7 6778777777544 444443
No 211
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=28.90 E-value=74 Score=30.74 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=35.3
Q ss_pred cCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHH
Q psy3863 84 VNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSL 146 (285)
Q Consensus 84 v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l 146 (285)
+.+..+.|+|. -.++++.+.|.++.+. .+|++..++++|++...++.+
T Consensus 59 sT~l~E~d~V~--------Gg~~~L~~~i~~~~~~-------~~P~~i~v~~tC~~~~iGdDi 106 (406)
T cd01967 59 STDMQEKDIVF--------GGEKKLKKAIKEAYER-------FPPKAIFVYSTCPTGLIGDDI 106 (406)
T ss_pred eccCCccceee--------CcHHHHHHHHHHHHHh-------CCCCEEEEECCCchhhhccCH
Confidence 46677888862 3488999999888632 237788899999998766543
No 212
>PRK09004 FMN-binding protein MioC; Provisional
Probab=28.67 E-value=1.8e+02 Score=24.23 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=44.5
Q ss_pred eccccCc--chhHHHHHHHhhCCeeec-------CCCCCCcEEEEecccc-ccchHHHHHHHHHHHHHhhhhhccCCCCC
Q psy3863 60 FGCQMNV--NDTEVVWSILKSSGYSKV-------NHPREADVILVMTCAI-RENAEGKVWDRLRFYRSMKQIHKKHRTFP 129 (285)
Q Consensus 60 yGC~~N~--~dsell~~lL~~~G~~~v-------~~~e~ADviiiNTCtV-r~~Ae~k~~~~I~~l~~~kr~~~~~~~p~ 129 (285)
||-+.+. ..++.+++.+.+.|+... ++..+.|++||-|.|. -....+........++... + .-.+
T Consensus 8 ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~----~-~l~g 82 (146)
T PRK09004 8 SGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK----P-DLSQ 82 (146)
T ss_pred EEcCchHHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC----C-CCCC
Confidence 5554443 456777777777776533 2234678888888886 3333333444444443211 0 1135
Q ss_pred cEEEEEccchhhh
Q psy3863 130 LKIGVLGCMAERL 142 (285)
Q Consensus 130 ~~IvVtGC~aq~~ 142 (285)
++..|-|+--+.+
T Consensus 83 ~~~aVfGlGds~Y 95 (146)
T PRK09004 83 VRFAAIGIGSSEY 95 (146)
T ss_pred CEEEEEeecCCCH
Confidence 6888888876654
No 213
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=28.59 E-value=1.2e+02 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHhhCCCccEEECCCCcCCHH
Q psy3863 145 SLLEKEQALDLVAGPDSYKDLP 166 (285)
Q Consensus 145 ~l~~~~~~Vd~VvG~~~~~~l~ 166 (285)
++.++.|++|+|+|-+.-..++
T Consensus 211 ~la~~~~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 211 ELAEEVPGIDAILTGHQHRRFP 232 (277)
T ss_pred HHHhcCCCCcEEEeCCCccccc
Confidence 6777789999999998865554
No 214
>PRK10494 hypothetical protein; Provisional
Probab=28.37 E-value=1.6e+02 Score=27.10 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=38.3
Q ss_pred chhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccch----HH----HHHHHHHHHHHhhhhhccCCCCCcEEEEEccc
Q psy3863 67 NDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENA----EG----KVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCM 138 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~A----e~----k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~ 138 (285)
--++.+..-|+. .|...+...++|.|||-.+...... .. ....+|.+.-++-+ .++..+|+++|=.
T Consensus 57 ~~~~~Ll~~LE~-~y~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~l~~~~~~Rl~~a~~L~r-----~~~~~~ii~SGg~ 130 (259)
T PRK10494 57 PVADRLLRPIES-RYPTWNGSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLTEGIRLWR-----ANPGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHHhc-ccCCCCCCCCCCEEEEcCCCcCCCCCCCCcHhHhhhHHHHHHHHHHHHH-----hCCCCEEEEECCC
Confidence 455666666663 4544444567999999999876331 11 11234444333323 2356789999964
Q ss_pred h
Q psy3863 139 A 139 (285)
Q Consensus 139 a 139 (285)
.
T Consensus 131 ~ 131 (259)
T PRK10494 131 A 131 (259)
T ss_pred C
Confidence 3
No 215
>KOG1420|consensus
Probab=28.27 E-value=27 Score=36.45 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=25.8
Q ss_pred cCCcchHhHhH----HHhcccccc---ccccc---ceeEEEecccCCCCccc
Q psy3863 235 MDDGGGASMSS----RQCGRFQST---LIDGH---RLCVTQLYLTNQDYPIP 276 (285)
Q Consensus 235 ~~d~g~~~~ll----~~~~~~~~~---~~~~~---~~~~~~~~~~n~~~~~~ 276 (285)
++|.|.||+|. +.-+.+.-- +-|-| ..||-|.-.|||||-..
T Consensus 1001 ~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvitnpp~ef~ 1052 (1103)
T KOG1420|consen 1001 LGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVITNPPYEFE 1052 (1103)
T ss_pred hccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEecCCchhhe
Confidence 35888999764 222222111 12222 45899999999999754
No 216
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=27.71 E-value=40 Score=33.21 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=45.0
Q ss_pred eeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEE-EEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVI-LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADvi-iiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
+-..+-||-.......- ...+.+..+ -+.+.++.|++ ++ ..++++.+.|.++.... .+|++..+
T Consensus 39 lvhGp~gCa~~~~~~~~-~~~~~~~~~-~tt~l~E~div~~~-------Gg~~~L~~ai~ei~~~~------~~P~~I~V 103 (427)
T PRK02842 39 LVVGSRTCAHLLQSAAG-VMIFAEPRF-GTAILEEGDLAGLA-------DANEELDRVVEELIKRR------PNISVLFL 103 (427)
T ss_pred EEecCCcchhhhhhhcc-cEeecCCcc-ceeccCcchhhhcC-------CcHHHHHHHHHHHHhcc------CCCCEEEE
Confidence 33467788744211000 012333344 34577888986 23 35899999999854221 13788899
Q ss_pred EEccchhhhhH
Q psy3863 134 VLGCMAERLKK 144 (285)
Q Consensus 134 VtGC~aq~~~~ 144 (285)
+++|++..-++
T Consensus 104 ~tTC~~e~IGD 114 (427)
T PRK02842 104 VGSCPSEVIKL 114 (427)
T ss_pred ECCChHHhhcC
Confidence 99999987654
No 217
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=27.29 E-value=85 Score=29.58 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=29.4
Q ss_pred eeEEEeccccCcchhHHHHHHHhhCC---eeec---------CCCCCCcEEEEeccc
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSILKSSG---YSKV---------NHPREADVILVMTCA 99 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL~~~G---~~~v---------~~~e~ADviiiNTCt 99 (285)
|-+.|.|-|.+....+.|+++|++.| |..+ .+..+.|++|+.+|-
T Consensus 214 Iiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~aCP 270 (307)
T PF01866_consen 214 IIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQIACP 270 (307)
T ss_dssp EEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-S-T
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEecCC
Confidence 55788998888888999999999999 3332 345568999999997
No 218
>PRK06703 flavodoxin; Provisional
Probab=27.26 E-value=1.3e+02 Score=24.72 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=36.9
Q ss_pred chhHHHHHHHhhCCeeec---------CCCCCCcEEEEeccccc-cchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEc
Q psy3863 67 NDTEVVWSILKSSGYSKV---------NHPREADVILVMTCAIR-ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG 136 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v---------~~~e~ADviiiNTCtVr-~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtG 136 (285)
.-.+.+++.|...|+... ++..++|.|+|=|.+.- ......+...+..++..+- .+++++|-|
T Consensus 17 ~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l-------~~k~~~vfg 89 (151)
T PRK06703 17 DIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDL-------SGKKVAVFG 89 (151)
T ss_pred HHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCC-------CCCEEEEEc
Confidence 345666666666675432 13457899999887763 3233344444554432111 245677777
Q ss_pred cchh
Q psy3863 137 CMAE 140 (285)
Q Consensus 137 C~aq 140 (285)
+...
T Consensus 90 ~g~~ 93 (151)
T PRK06703 90 SGDT 93 (151)
T ss_pred cCCC
Confidence 6543
No 219
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=27.17 E-value=1.1e+02 Score=27.15 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=39.9
Q ss_pred eeEEEe--ccccCcchhHHHHHH-----HhhCCeeec-CCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCC
Q psy3863 55 VYFEVF--GCQMNVNDTEVVWSI-----LKSSGYSKV-NHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHR 126 (285)
Q Consensus 55 v~i~Ty--GC~~N~~dsell~~l-----L~~~G~~~v-~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~ 126 (285)
+|..+| || -+.|+++.. ++..|+..+ .++..||+++|.- +|+.+-.. .+.++.+. |.
T Consensus 43 lw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllVtG-~VT~~m~~----~l~~~~e~--~p---- 107 (182)
T PRK14816 43 LWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMVCG-TITNKMAP----VLKRLYDQ--MA---- 107 (182)
T ss_pred cceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEEec-CCcchhHH----HHHHHHHh--cC----
Confidence 455555 45 456665433 355687665 8899999987654 44444333 33333211 01
Q ss_pred CCCcEEEEEccchhh
Q psy3863 127 TFPLKIGVLGCMAER 141 (285)
Q Consensus 127 ~p~~~IvVtGC~aq~ 141 (285)
+|...|.+.-|....
T Consensus 108 ~pK~VIAvGsCA~~G 122 (182)
T PRK14816 108 DPKYVIAVGGCAVSG 122 (182)
T ss_pred CCCEEEEeccccccC
Confidence 245566677787654
No 220
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=27.00 E-value=1.4e+02 Score=28.26 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=25.6
Q ss_pred CCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHH
Q psy3863 128 FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167 (285)
Q Consensus 128 p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e 167 (285)
.+..|+++=+-......++.++.+++|+|+|-++-..+.+
T Consensus 208 vD~II~LsH~g~~~~d~~lA~~v~gIDvIigGHsH~~l~~ 247 (313)
T cd08162 208 INKIILLSHLQQISIEQALAALLSGVDVIIAGGSNTLLAD 247 (313)
T ss_pred CCEEEEEecccccchHHHHHhcCCCCCEEEeCCCCccCcC
Confidence 3545554433122234567788999999999998766643
No 221
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.71 E-value=98 Score=30.41 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=44.8
Q ss_pred EEEeccccCcchhHHHHHHHh-hCC---eeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 57 FEVFGCQMNVNDTEVVWSILK-SSG---YSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 57 i~TyGC~~N~~dsell~~lL~-~~G---~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
-..-||..+...........+ ..+ ...+.+..+.|+| --.++|+.+.|.++.+. .+|++..
T Consensus 30 Hgp~GC~~~~~~~~~~~~~~~~~~~~~~~~~sT~l~E~dvV--------fGg~~kL~~aI~~~~~~-------~~P~~I~ 94 (426)
T cd01972 30 HGPIGCAAGQSFFNRLYRCGEMRRGLNEPVLSTNLTEKDVV--------FGGEKKLEDTIKEAYSR-------YKPKAIF 94 (426)
T ss_pred eCCccccCChhhhhhhhhccccccCCCCcccccCCCcccee--------cchHHHHHHHHHHHHHh-------CCCCEEE
Confidence 357788765544322221111 112 2234667788885 24588999999988632 2378889
Q ss_pred EEEccchhhhhH
Q psy3863 133 GVLGCMAERLKK 144 (285)
Q Consensus 133 vVtGC~aq~~~~ 144 (285)
++++|++...++
T Consensus 95 V~ttC~~~iIGd 106 (426)
T cd01972 95 VATSCATGIIGD 106 (426)
T ss_pred EECCChHHHhcc
Confidence 999999987643
No 222
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.67 E-value=3e+02 Score=26.60 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=23.7
Q ss_pred CeEEEEEccccCCCCCcccccCccccCCCCCC----hhhhhhHHhh
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRP----MQSILDEVRA 50 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~----~~~IV~e~~~ 50 (285)
+...||-|=- |+++|.||-......+ ...+ .+.+++|+..
T Consensus 6 ~~~lYiHiPF-C~~~C~yC~f~~~~~~-~~~~~~~Y~~~l~~Ei~~ 49 (378)
T PRK05660 6 PLSLYIHIPW-CVQKCPYCDFNSHALK-GEVPEDEYVDHLLADLDA 49 (378)
T ss_pred ceEEEEEeCC-ccCcCCCCCCeecCCC-CcCCHHHHHHHHHHHHHH
Confidence 3455666665 9999999987543221 1122 4446666653
No 223
>KOG2672|consensus
Probab=26.62 E-value=1.1e+02 Score=29.25 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=30.1
Q ss_pred EEEccccCCCCCcccccCccc--cCCCCCChhhhhhHHhhcC
Q psy3863 13 FVSIMRGCDNMCTYCIVPFTR--GRERSRPMQSILDEVRALS 52 (285)
Q Consensus 13 ~v~i~~GC~~~CsyCiip~~r--G~~~Sr~~~~IV~e~~~~g 52 (285)
+.-..|-|...|-||.|+-+| ++.----++...+.|+.=|
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWg 155 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWG 155 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcC
Confidence 445579999999999999999 4566666677776666533
No 224
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=26.36 E-value=1.1e+02 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEEEccccCCCCCcccccCccccCC--CCCChhhhhhHHhh
Q psy3863 11 SAFVSIMRGCDNMCTYCIVPFTRGRE--RSRPMQSILDEVRA 50 (285)
Q Consensus 11 ~a~v~i~~GC~~~CsyCiip~~rG~~--~Sr~~~~IV~e~~~ 50 (285)
--||-|=- |.++|+||-........ ..+-.+.+++|+..
T Consensus 6 ~lYiHIPF-C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~ 46 (380)
T PRK09057 6 GLYVHWPF-CLAKCPYCDFNSHVRHAIDQARFAAAFLRELAT 46 (380)
T ss_pred EEEEEeCC-cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHH
Confidence 34554444 99999999876543221 12346667777653
No 225
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.31 E-value=2.8e+02 Score=23.80 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=32.2
Q ss_pred hHHHHHHHhhCCeeec---------CCCCCCcEEEEeccccccchHHHHHHHHHHH
Q psy3863 69 TEVVWSILKSSGYSKV---------NHPREADVILVMTCAIRENAEGKVWDRLRFY 115 (285)
Q Consensus 69 sell~~lL~~~G~~~v---------~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l 115 (285)
++.|++.|.. |.+.. .+..+.|.|||=+.+-.......+...|.+.
T Consensus 18 A~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~ 72 (177)
T PRK11104 18 ASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKH 72 (177)
T ss_pred HHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHH
Confidence 6677777766 64422 1345689999999887777777777777654
No 226
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=25.99 E-value=57 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCeeec---------------CCCCCCcEEEEeccc
Q psy3863 70 EVVWSILKSSGYSKV---------------NHPREADVILVMTCA 99 (285)
Q Consensus 70 ell~~lL~~~G~~~v---------------~~~e~ADviiiNTCt 99 (285)
+.+++.+++.||+.. ++..+||+||+-+-.
T Consensus 19 ~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 19 EALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCC
Confidence 555566666676544 334567877776644
No 227
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.81 E-value=5e+02 Score=23.45 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=37.3
Q ss_pred CCCcEEEEeccccccchHHH----HHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCC
Q psy3863 88 READVILVMTCAIRENAEGK----VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160 (285)
Q Consensus 88 e~ADviiiNTCtVr~~Ae~k----~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~ 160 (285)
+..|.|+|-|=-= ..+-|+ .+..|++++++.. + .+.+..|.|.|-+....-..+.+....+ +|+|+.
T Consensus 131 ~~vD~VlvMtV~P-Gf~GQ~fi~~~l~KI~~l~~~~~-~---~~~~~~IeVDGGI~~eti~~l~~aGaDi-~V~GSa 201 (223)
T PRK08745 131 PELDLVLVMSVNP-GFGGQAFIPSALDKLRAIRKKID-A---LGKPIRLEIDGGVKADNIGAIAAAGADT-FVAGSA 201 (223)
T ss_pred hhcCEEEEEEECC-CCCCccccHHHHHHHHHHHHHHH-h---cCCCeeEEEECCCCHHHHHHHHHcCCCE-EEEChh
Confidence 4578888887321 222333 3345555554422 1 1235779999988865555655544433 466653
No 228
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=25.23 E-value=32 Score=28.51 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=37.4
Q ss_pred CChhhhhhHHhhcCceeeEEEeccccCcchhHHHHHHHhhCCe-eecCCCCCCcEEEE
Q psy3863 39 RPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGY-SKVNHPREADVILV 95 (285)
Q Consensus 39 r~~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~lL~~~G~-~~v~~~e~ADviii 95 (285)
.|+++.++++.+.|.++|+=..+-+++...++.+.+-.+..|- +...-..+||+.++
T Consensus 62 ~~l~~~~~~a~e~GVk~yvCe~s~~~~~~~ed~l~egvkI~G~~tF~~l~~ea~~~~~ 119 (120)
T COG2044 62 PPLEELIKQAIEAGVKIYVCEQSLKLRGIKEDDLVEGVKIVGAATFLLLASEADVVLT 119 (120)
T ss_pred CCHHHHHHHHHHcCCEEEEEcchhhhcCcchhhhhhccEeccHHHHHHHHhCcCceee
Confidence 6888999999999999998777777666666666555554441 11122345666443
No 229
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=25.07 E-value=36 Score=33.72 Aligned_cols=15 Identities=27% Similarity=0.868 Sum_probs=0.0
Q ss_pred cCCCCCcccccCccc
Q psy3863 19 GCDNMCTYCIVPFTR 33 (285)
Q Consensus 19 GC~~~CsyCiip~~r 33 (285)
||+.+|.||.-|...
T Consensus 8 gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 8 DCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCcCCCCCCCCCC
No 230
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.47 E-value=3.5e+02 Score=23.93 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=42.9
Q ss_pred CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhh----hhHHHHhhCCCccEE-ECCCCc
Q psy3863 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAER----LKKSLLEKEQALDLV-AGPDSY 162 (285)
Q Consensus 88 e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~----~~~~l~~~~~~Vd~V-vG~~~~ 162 (285)
++||+|||.-=.=-+-..+++..++....+. ++.++++ +-.+ .-+++. ...++ .| +-+.+.
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~----------~kpliat--lHrrsr~P~v~~ik-~~~~v-~v~lt~~NR 164 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKS----------GKPLIAT--LHRRSRHPLVQRIK-KLGGV-YVFLTPENR 164 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcC----------CCcEEEE--EecccCChHHHHhh-hcCCE-EEEEccchh
Confidence 4599999998777777788889888877521 2234433 2222 122332 33344 34 778888
Q ss_pred CCHHHHHHhhc
Q psy3863 163 KDLPRLLALTY 173 (285)
Q Consensus 163 ~~l~e~v~~~~ 173 (285)
+++..-+-..+
T Consensus 165 ~~i~~~Il~~L 175 (179)
T COG1618 165 NRILNEILSVL 175 (179)
T ss_pred hHHHHHHHHHh
Confidence 76665544333
No 231
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=24.35 E-value=1.9e+02 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=23.8
Q ss_pred CCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCH
Q psy3863 128 FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165 (285)
Q Consensus 128 p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l 165 (285)
.+..|+++ -+......++.+++|++|+|+|-+.-...
T Consensus 184 ~D~iI~l~-H~g~~~~~~la~~~~~iDlilgGH~H~~~ 220 (264)
T cd07411 184 VDVVVLLS-HNGLPVDVELAERVPGIDVILSGHTHERT 220 (264)
T ss_pred CCEEEEEe-cCCchhhHHHHhcCCCCcEEEeCcccccc
Confidence 45555555 33333344677789999999998765443
No 232
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=24.28 E-value=1.7e+02 Score=25.87 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=41.0
Q ss_pred CCChhhhhhHHhhcCceeeEEEeccccCcchhHHHHHHHhhCCeeec--------CCCCCCcEEEEeccccccchHHHHH
Q psy3863 38 SRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV--------NHPREADVILVMTCAIRENAEGKVW 109 (285)
Q Consensus 38 Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v--------~~~e~ADviiiNTCtVr~~Ae~k~~ 109 (285)
..+.++++++.+..|..+++..||-+.+....++-..+.....+-++ +-.+.||.+| ++.+..- -.+
T Consensus 63 ~~s~~~~i~~~k~~G~vvhLtmyga~~~~~~~~ir~~~~~~~p~LIvvGg~gvp~evye~aDynl----gvg~qpH-Svr 137 (176)
T PRK03958 63 TKSWKKEIREWKDGGIVVHLTMYGENIQDVEPEIREAHRKGEPLLIVVGAEKVPREVYELADWNV----AVGNQPH-SEV 137 (176)
T ss_pred cCCHHHHHHHHHhCCcEEEEEEecCCccchHHHHHHhhccCCcEEEEEcCCCCCHHHHhhCCEEe----ccCCCCh-HHH
Confidence 35677888888766888999999977766444443322222223222 2235688877 6665444 344
Q ss_pred HHH
Q psy3863 110 DRL 112 (285)
Q Consensus 110 ~~I 112 (285)
.++
T Consensus 138 AAl 140 (176)
T PRK03958 138 AAL 140 (176)
T ss_pred HHH
Confidence 443
No 233
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=24.14 E-value=6.8e+02 Score=24.44 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCCChhhhhhHHhhcC---ceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHH
Q psy3863 37 RSRPMQSILDEVRALS---DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113 (285)
Q Consensus 37 ~Sr~~~~IV~e~~~~g---~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~ 113 (285)
|..++|+-++.++... .......-| .+..|.|.+..++++. ..+|+|+|.+=- --.+.+.+.|+
T Consensus 76 k~~~~e~~~~~v~~~~~~~~~~~~vsvG--~~~~d~er~~~L~~a~--------~~~d~iviD~Ah---Ghs~~~i~~ik 142 (343)
T TIGR01305 76 KHYSVDEWKAFATNSSPDCLQNVAVSSG--SSDNDLEKMTSILEAV--------PQLKFICLDVAN---GYSEHFVEFVK 142 (343)
T ss_pred eCCCHHHHHHHHHhhcccccceEEEEec--cCHHHHHHHHHHHhcC--------CCCCEEEEECCC---CcHHHHHHHHH
Confidence 4466776666664411 111222445 3456778888877652 136899888733 22234445555
Q ss_pred HHHHhhhhhccCCCCCcEEEEEccchhh-hhHHHHhhCCCccEE
Q psy3863 114 FYRSMKQIHKKHRTFPLKIGVLGCMAER-LKKSLLEKEQALDLV 156 (285)
Q Consensus 114 ~l~~~kr~~~~~~~p~~~IvVtGC~aq~-~~~~l~~~~~~Vd~V 156 (285)
.++ + ..|+ ..++.|=++.. ...++.+ .++|.|
T Consensus 143 ~ir---~-----~~p~-~~viaGNV~T~e~a~~Li~--aGAD~i 175 (343)
T TIGR01305 143 LVR---E-----AFPE-HTIMAGNVVTGEMVEELIL--SGADIV 175 (343)
T ss_pred HHH---h-----hCCC-CeEEEecccCHHHHHHHHH--cCCCEE
Confidence 554 2 1244 56677844433 3344443 367776
No 234
>PRK07308 flavodoxin; Validated
Probab=24.00 E-value=1.9e+02 Score=23.63 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=38.9
Q ss_pred hhHHHHHHHhhCCeeec----C-----CCCCCcEEEEeccccc-cchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEcc
Q psy3863 68 DTEVVWSILKSSGYSKV----N-----HPREADVILVMTCAIR-ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGC 137 (285)
Q Consensus 68 dsell~~lL~~~G~~~v----~-----~~e~ADviiiNTCtVr-~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC 137 (285)
..+.|++.|...|.... + +..++|.|||=|.|.- ....+.+...+..++..+ ..+++++|-|.
T Consensus 18 iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~-------l~~k~~~vfG~ 90 (146)
T PRK07308 18 IADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLD-------LSGKIYGVVGS 90 (146)
T ss_pred HHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCC-------CCCCEEEEEee
Confidence 46777777777775421 1 2356789999777775 344455666666664321 12567778777
Q ss_pred c
Q psy3863 138 M 138 (285)
Q Consensus 138 ~ 138 (285)
-
T Consensus 91 G 91 (146)
T PRK07308 91 G 91 (146)
T ss_pred C
Confidence 3
No 235
>PRK05568 flavodoxin; Provisional
Probab=23.95 E-value=1.7e+02 Score=23.49 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhCCeeec---------CCCCCCcEEEEeccccccch--HHHHHHHHHHHHHhhhhhccCCCCCcEEEEEc
Q psy3863 68 DTEVVWSILKSSGYSKV---------NHPREADVILVMTCAIRENA--EGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLG 136 (285)
Q Consensus 68 dsell~~lL~~~G~~~v---------~~~e~ADviiiNTCtVr~~A--e~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtG 136 (285)
-.+.+++.+...|++.. .+..++|.+||=|.+.-... ...+...+.++.... .++++++-|
T Consensus 18 ~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~--------~~k~~~~f~ 89 (142)
T PRK05568 18 MANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLV--------KGKKLVLFG 89 (142)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhh--------CCCEEEEEE
Confidence 34555555556665432 13467899999999975432 134555555543211 145677777
Q ss_pred cchh
Q psy3863 137 CMAE 140 (285)
Q Consensus 137 C~aq 140 (285)
+...
T Consensus 90 t~G~ 93 (142)
T PRK05568 90 SYGW 93 (142)
T ss_pred ccCC
Confidence 7544
No 236
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=23.94 E-value=1.9e+02 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=25.3
Q ss_pred CCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHH
Q psy3863 128 FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLP 166 (285)
Q Consensus 128 p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~ 166 (285)
++..|+++-+ ......++.+++|++|+|+|-+.-....
T Consensus 172 ~D~iVvl~H~-g~~~d~~la~~~~~iD~IlgGH~H~~~~ 209 (257)
T cd07406 172 ADLIIALTHM-RLPNDKRLAREVPEIDLILGGHDHEYIL 209 (257)
T ss_pred CCEEEEEecc-CchhhHHHHHhCCCCceEEecccceeEe
Confidence 5656666544 3333345778899999999998665553
No 237
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=23.89 E-value=1.6e+02 Score=26.11 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCChhhhhhHHhhcCceeeEEEeccccCcchhHHHHHH-----HhhCCeeec-CCCCCCcEEEEeccccccchHHHHHH
Q psy3863 37 RSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSI-----LKSSGYSKV-NHPREADVILVMTCAIRENAEGKVWD 110 (285)
Q Consensus 37 ~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~l-----L~~~G~~~v-~~~e~ADviiiNTCtVr~~Ae~k~~~ 110 (285)
...+++++++-.+. ...|+.+||+.- -+.|.+.-. ++..|+..+ .++..||+++|.- +|+ .++..
T Consensus 19 ~~~~~~~~~~w~r~--~Slw~~~~~~sC--C~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillVtG-~VT----~~m~~ 89 (183)
T PRK14815 19 VVTTLDAAINWIRK--NSLWPMPMGLAC--CAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAG-TVT----YKMAL 89 (183)
T ss_pred ehhhHHHHHHHHHh--CCccceeEccch--HHHHHHHhcCccccHHHhCcccCCCCCccccEEEEeC-cCc----hhhHH
Confidence 44555555554433 235555554311 455554432 345576554 7889999987654 333 34444
Q ss_pred HHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 111 ~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
.+.++.+. .+ +|...|.+..|...
T Consensus 90 ~l~r~ye~----~p--~pK~VIAvGsCA~~ 113 (183)
T PRK14815 90 AVRRIYDQ----MP--EPKWVIAMGACASS 113 (183)
T ss_pred HHHHHHHh----CC--CCCEEEEecccccc
Confidence 44444321 11 24555666667654
No 238
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.80 E-value=2e+02 Score=28.50 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=65.3
Q ss_pred ccCCCCCChhhhhhHHhh--cCc---e---eeEEEeccccCcchhHHHHHHHhhCCeeec-------------CCCCCCc
Q psy3863 33 RGRERSRPMQSILDEVRA--LSD---K---VYFEVFGCQMNVNDTEVVWSILKSSGYSKV-------------NHPREAD 91 (285)
Q Consensus 33 rG~~~Sr~~~~IV~e~~~--~g~---k---v~i~TyGC~~N~~dsell~~lL~~~G~~~v-------------~~~e~AD 91 (285)
.|......+.++++.=.+ +++ + +|...||- -....+.+++-|.+.|.... .+..+|+
T Consensus 222 HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~--T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~ 299 (388)
T COG0426 222 HGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGN--TEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAK 299 (388)
T ss_pred CCceeeCCHHHHHHHHHHHHccCCcceEEEEEecccCC--HHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcc
Confidence 477777778888877443 221 3 45567772 12345555666667775433 2244688
Q ss_pred EEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhh
Q psy3863 92 VILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAER 141 (285)
Q Consensus 92 viiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~ 141 (285)
-++|-|+|+-..+--.+...|..+..++- +++.++|-|.+...
T Consensus 300 ~~vvGsPT~~~~~~p~i~~~l~~v~~~~~-------~~k~~~vfgS~GW~ 342 (388)
T COG0426 300 GLVVGSPTINGGAHPPIQTALGYVLALAP-------KNKLAGVFGSYGWS 342 (388)
T ss_pred eEEEecCcccCCCCchHHHHHHHHHhccC-------cCceEEEEeccCCC
Confidence 89999999988888888888887765432 35567788887763
No 239
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity 3.1.11 from EC. Thus, the aligned region may be necessary for 5'-3' exonuclease function.; GO: 0003676 nucleic acid binding, 0004527 exonuclease activity, 0005622 intracellular; PDB: 2Y35_A 3PIE_B 3PIF_C 3FQD_A.
Probab=23.47 E-value=2.6e+02 Score=25.62 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=26.2
Q ss_pred EEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 92 VILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 92 viiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
-||+..|.|-.+.|.|+++.|+..+.... -+|+...+|-|.=|.
T Consensus 174 ~vi~S~~~vpGEGE~KI~~~IR~~~~~~~-----~~~n~~h~i~g~DaD 217 (237)
T PF03159_consen 174 KVIFSGSDVPGEGEHKIMDFIRSQRSQPD-----YDPNTSHCIYGSDAD 217 (237)
T ss_dssp EEEEE-TTSSS-HHHHHHHHHHHHHHSTT-----S-TT--EEEE-SSTH
T ss_pred EEEEeCCCCCCccHHHHHHHHHHhhhcCC-----CCCCceEEEEecCHh
Confidence 37889999999999999999988764332 223445555554433
No 240
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=23.00 E-value=2.5e+02 Score=20.80 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=22.8
Q ss_pred cEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 91 DVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 91 DviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
++.|||-.+=.-.+-+.+++.++++.. ...+++|.|+|..
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~----------~~~~i~V~G~~~d 52 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYP----------KGRIIAVFGAMGD 52 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCT----------TSEEEEEEEEBTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcc----------CCcEEEEEccccc
Confidence 455666655444555555555554421 1457889999887
No 241
>PRK03094 hypothetical protein; Provisional
Probab=22.88 E-value=1e+02 Score=23.73 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=13.4
Q ss_pred hhHHHHHHHhhCCeeecC
Q psy3863 68 DTEVVWSILKSSGYSKVN 85 (285)
Q Consensus 68 dsell~~lL~~~G~~~v~ 85 (285)
+++ +++.|++.||++++
T Consensus 10 Ls~-i~~~L~~~GYeVv~ 26 (80)
T PRK03094 10 LTD-VQQALKQKGYEVVQ 26 (80)
T ss_pred cHH-HHHHHHHCCCEEEe
Confidence 444 78899999999873
No 242
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.40 E-value=91 Score=30.91 Aligned_cols=48 Identities=6% Similarity=-0.064 Sum_probs=33.8
Q ss_pred ecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHH
Q psy3863 83 KVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKS 145 (285)
Q Consensus 83 ~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~ 145 (285)
.+.+..+.|+| --.++++.+.|.++.+. .+|++..++++|++...++.
T Consensus 62 ~sT~l~E~d~V--------fGg~~~L~~~I~~~~~~-------~~P~~I~V~ttC~~eiIGDD 109 (432)
T TIGR01285 62 QTTAMDEVSTI--------LGGDEHIEEAIDTLCQR-------NKPKAIGLLSTGLTETRGED 109 (432)
T ss_pred eeecCCCCceE--------ECcHHHHHHHHHHHHHh-------cCCCEEEEeCCCcccccccC
Confidence 34555555654 35789999999988642 23788999999999865543
No 243
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=22.15 E-value=2.9e+02 Score=24.43 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCCCChhhhhhHHhhcCceeeEEEe--ccccCcchhHHHHHHHh-----hCCee-ecCCCCCCcEEEEeccccccchHHH
Q psy3863 36 ERSRPMQSILDEVRALSDKVYFEVF--GCQMNVNDTEVVWSILK-----SSGYS-KVNHPREADVILVMTCAIRENAEGK 107 (285)
Q Consensus 36 ~~Sr~~~~IV~e~~~~g~kv~i~Ty--GC~~N~~dsell~~lL~-----~~G~~-~v~~~e~ADviiiNTCtVr~~Ae~k 107 (285)
...-+++++++=.+.. ..|+.+| || -+.|++..+.. ..|.. .+.++..||+++|.-.- +.+-
T Consensus 18 ~~~~~~~~~~~w~r~~--Slw~~~~~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVeG~V-T~~m--- 87 (180)
T PRK14820 18 FFATSLDSVIGLARKN--SLWPLPFATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTI-AKKM--- 87 (180)
T ss_pred eEeeeHHHHHHHHhhC--CCceeeecccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEEEecC-Cccc---
Confidence 3445566666544432 3444333 56 56676665543 34553 35778999998776543 3332
Q ss_pred HHHHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 108 VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 108 ~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
...+.++.+.- .+|...|.+..|...
T Consensus 88 -~~~l~~~~e~~------p~pk~VIAvGaCA~~ 113 (180)
T PRK14820 88 -APVLKQVYLQM------AEPRWVVAVGACASS 113 (180)
T ss_pred -HHHHHHHHHhc------CCCCeEEEEeccccc
Confidence 34444443210 124556767778765
No 244
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=22.03 E-value=35 Score=31.83 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=10.4
Q ss_pred EEecccCCCCcccc
Q psy3863 264 TQLYLTNQDYPIPR 277 (285)
Q Consensus 264 ~~~~~~n~~~~~~~ 277 (285)
.-+=.+|||||=..
T Consensus 177 fDlIVsNPPYip~~ 190 (280)
T COG2890 177 FDLIVSNPPYIPAE 190 (280)
T ss_pred eeEEEeCCCCCCCc
Confidence 44557999998665
No 245
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=21.87 E-value=74 Score=32.41 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=19.5
Q ss_pred c-cccCCcccccChHHHHhhhhccc
Q psy3863 212 S-IYVDGRWRRKLGQQMVDGRSMSM 235 (285)
Q Consensus 212 C-~~aRG~~rS~~~~~iv~~~~~~~ 235 (285)
| --.||.+.++|+|+|+++++.+.
T Consensus 204 CtEp~~g~~~~R~~e~Vv~EVkaLY 228 (560)
T COG1031 204 CTEPVRGRPEFRPPEDVVEEVKALY 228 (560)
T ss_pred ccCcCcCCcccCCHHHHHHHHHHHH
Confidence 7 23459999999999999998643
No 246
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.62 E-value=2.2e+02 Score=25.66 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=33.3
Q ss_pred CCChhhhhhHHhhcCce-eeE--EEeccc-----cCcchhHHHHHHHhhCCeeec
Q psy3863 38 SRPMQSILDEVRALSDK-VYF--EVFGCQ-----MNVNDTEVVWSILKSSGYSKV 84 (285)
Q Consensus 38 Sr~~~~IV~e~~~~g~k-v~i--~TyGC~-----~N~~dsell~~lL~~~G~~~v 84 (285)
.++.++.++.+++.|+. |.+ ..+++. ....+.+.+++.+++.|.+++
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 67899999999998864 444 333332 233457788999999998764
No 247
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=21.23 E-value=1.3e+02 Score=30.69 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=46.9
Q ss_pred EEeccccCcchhHH-HHHHHh-hCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEE
Q psy3863 58 EVFGCQMNVNDTEV-VWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVL 135 (285)
Q Consensus 58 ~TyGC~~N~~dsel-l~~lL~-~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVt 135 (285)
..-||..+..+.-. +..... ...+..+.+..+.|+| --.++|+++.|.++.+.- .+|.+..|++
T Consensus 71 gP~GC~~~~~~~r~~~s~~~~~~~~~~~~T~l~E~diV--------fGGe~kL~~~I~ea~~~~------~~p~~I~V~t 136 (513)
T TIGR01861 71 GPVGCTYDTWQTKRYISDNDNFQLKYTFATDVKEKHVV--------FGAEKLLKQNIIEAFKAF------PHIKRMTIYQ 136 (513)
T ss_pred CccccccCchhhcchhccCCCcccceeeccCCCcCceE--------eCcHHHHHHHHHHHHHhC------CCCCeEEEEc
Confidence 57789877644421 111000 1234566788888885 257999999999886321 0256788899
Q ss_pred ccchhhhhHH
Q psy3863 136 GCMAERLKKS 145 (285)
Q Consensus 136 GC~aq~~~~~ 145 (285)
+|++..-++.
T Consensus 137 TC~t~lIGDD 146 (513)
T TIGR01861 137 TCATALIGDD 146 (513)
T ss_pred cCchhhccCC
Confidence 9999876643
No 248
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=21.16 E-value=1.2e+02 Score=30.42 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=34.9
Q ss_pred cCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHH
Q psy3863 84 VNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKS 145 (285)
Q Consensus 84 v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~ 145 (285)
+.+..+.|+| --.++++.+.|.++.+.. + +|.+..++++|+++..++.
T Consensus 58 sT~l~E~d~V--------fGG~~~L~~~I~~~~~~~----~--~p~~I~V~tTC~~eiIGDD 105 (454)
T cd01973 58 SSSLHEDSAV--------FGGAKRVEEGVLVLARRY----P--DLRVIPIITTCSTEIIGDD 105 (454)
T ss_pred cccCCCCceE--------ECcHHHHHHHHHHHHHhc----C--CCCEEEEECCchHhhhccC
Confidence 4667777775 357899999999886321 0 2577889999999986654
No 249
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=20.92 E-value=6.5e+02 Score=24.89 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=44.1
Q ss_pred hhhhhhHHhhcCceeeEEEeccccCcchhHHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhh
Q psy3863 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ 120 (285)
Q Consensus 41 ~~~IV~e~~~~g~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr 120 (285)
+...++.+++.|.++-+..++.. ...+.++.++. ..|++.+-|-.=.+ .....++.|++++++
T Consensus 265 i~~ai~~akk~GikvgVD~lnp~---tp~e~i~~l~~-----------~vD~Vllht~vdp~-~~~~~~~kI~~ikk~-- 327 (391)
T PRK13307 265 IEKAIHEAQKTGIYSILDMLNVE---DPVKLLESLKV-----------KPDVVELHRGIDEE-GTEHAWGNIKEIKKA-- 327 (391)
T ss_pred HHHHHHHHHHcCCEEEEEEcCCC---CHHHHHHHhhC-----------CCCEEEEccccCCC-cccchHHHHHHHHHh--
Confidence 44555556656655444333321 22344444321 25777777622111 223355555555432
Q ss_pred hhccCCCCCcEEEEEc-cchhhhhHHHHhhCCCcc-EEECCC
Q psy3863 121 IHKKHRTFPLKIGVLG-CMAERLKKSLLEKEQALD-LVAGPD 160 (285)
Q Consensus 121 ~~~~~~~p~~~IvVtG-C~aq~~~~~l~~~~~~Vd-~VvG~~ 160 (285)
..+..|.|.| .-++. -.++.+. ++| +|+|..
T Consensus 328 ------~~~~~I~VdGGI~~et-i~~l~~a--GADivVVGsa 360 (391)
T PRK13307 328 ------GGKILVAVAGGVRVEN-VEEALKA--GADILVVGRA 360 (391)
T ss_pred ------CCCCcEEEECCcCHHH-HHHHHHc--CCCEEEEeHH
Confidence 1245677765 55554 4444443 445 456653
No 250
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.75 E-value=75 Score=30.19 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHH-HHHHHhhhhhccCCCCCcEE---EEEccchhhh---
Q psy3863 70 EVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL-RFYRSMKQIHKKHRTFPLKI---GVLGCMAERL--- 142 (285)
Q Consensus 70 ell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I-~~l~~~kr~~~~~~~p~~~I---vVtGC~aq~~--- 142 (285)
..+.++|++.|. ++++-|++|+|+|++.-... +-..| ++++ + +++.+. .=.||.|-..
T Consensus 89 ~av~~LL~ktgv----~p~dIdiLVvncs~f~ptPS--LsamIvnr~~-m--------r~di~~~nLsGMGCsAgliai~ 153 (290)
T PF08392_consen 89 GAVDDLLAKTGV----KPSDIDILVVNCSLFNPTPS--LSAMIVNRYG-M--------RSDIKSYNLSGMGCSAGLIAID 153 (290)
T ss_pred HHHHHHHHHcCC----CHHHCCEEEEECcCCCcCCc--HHHHHHHHhC-C--------CcCeeeecccCCcchhhHHHHH
Confidence 456677788886 35678999999999866553 22222 3442 1 123332 2357988643
Q ss_pred -hHHHHhhCCC-ccEEECCCC
Q psy3863 143 -KKSLLEKEQA-LDLVAGPDS 161 (285)
Q Consensus 143 -~~~l~~~~~~-Vd~VvG~~~ 161 (285)
...+++..|+ .-+|+.++.
T Consensus 154 lA~~lL~~~p~~~ALVVstE~ 174 (290)
T PF08392_consen 154 LAKDLLQAHPNSYALVVSTEN 174 (290)
T ss_pred HHHHHHHhCCCcEEEEEEEee
Confidence 2445555663 335555544
No 251
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.72 E-value=4.5e+02 Score=21.05 Aligned_cols=57 Identities=14% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHhhCC-eeecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 72 VWSILKSSG-YSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 72 l~~lL~~~G-~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
+..+.+..| |+..++++ ++++=+.||.==. .+++...+++++ + . +.+ .|-++-||..
T Consensus 20 ~ka~~~r~g~F~~y~~~~-~elvgf~~CgGCp--g~~~~~~~~~l~---~-~----~~d-~IHlssC~~~ 77 (107)
T PF08821_consen 20 FKAFNERKGAFARYDDED-VELVGFFTCGGCP--GRKLVRRIKKLK---K-N----GAD-VIHLSSCMVK 77 (107)
T ss_pred HHHHHhccCccccCCCCC-eEEEEEeeCCCCC--hhHHHHHHHHHH---H-C----CCC-EEEEcCCEec
Confidence 344445555 55554433 8888888876211 455666666554 2 1 123 6668888876
No 252
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.70 E-value=1.8e+02 Score=25.83 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=45.1
Q ss_pred CChhhhhhHHhhcC-ceeeEEEeccccCcchhHHHHHHH-----hhCCeeecCCCCCCcEEEEeccccccchHHHHHHHH
Q psy3863 39 RPMQSILDEVRALS-DKVYFEVFGCQMNVNDTEVVWSIL-----KSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112 (285)
Q Consensus 39 r~~~~IV~e~~~~g-~kv~i~TyGC~~N~~dsell~~lL-----~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I 112 (285)
-+++++++=++... .-+++.| || -+.|.+..+. +..|+..+.++..||+++|.- +|+.+. ...+
T Consensus 23 ~~~~~~~~w~r~~Slw~~~~~~-~C----C~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV~G-~vt~~~----~~~l 92 (183)
T PRK06411 23 TTLDDLVNWARKNSLWPLTFGL-AC----CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAG-TLTNKM----APAL 92 (183)
T ss_pred eeHHHHHHHHHhCCccceeeCc-cH----hHHHHHHccCccccHHHhCccccCCCCceeEEEEEe-CCCccc----hHHH
Confidence 34455554443321 1133444 55 4666665443 345665668899999987765 455553 3333
Q ss_pred HHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 113 ~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
+++.+. |. +|...|.+.-|...
T Consensus 93 ~~~~e~--mp----~pk~VIA~GaCA~~ 114 (183)
T PRK06411 93 RRLYDQ--MP----EPKWVISMGSCANS 114 (183)
T ss_pred HHHHHH--cC----cCCeEEEEeccccc
Confidence 333211 01 24556667778665
No 253
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=20.54 E-value=2.8e+02 Score=25.31 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=49.1
Q ss_pred eEEEEEccccCCCCCcccccCc-cccCCCCCChhhhhhHHhh----cCceeeEEEecccc-CcchhHHHHHHHhhCCe-e
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPF-TRGRERSRPMQSILDEVRA----LSDKVYFEVFGCQM-NVNDTEVVWSILKSSGY-S 82 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~-~rG~~~Sr~~~~IV~e~~~----~g~kv~i~TyGC~~-N~~dsell~~lL~~~G~-~ 82 (285)
..+||-+..|+ .+-. ..+..-.+..+++..-..- .|.++....+|-.. ...+.+.++.+-+..+. .
T Consensus 114 p~gYiv~~~~~-------~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~p 186 (232)
T PRK04169 114 PEGYIVLNPGS-------KVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITP 186 (232)
T ss_pred ceEEEEECCCC-------eeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCc
Confidence 35788887777 2333 4455666777777666432 46553333344222 22345666665554332 1
Q ss_pred ec--------CC-----CCCCcEEEEeccccccch
Q psy3863 83 KV--------NH-----PREADVILVMTCAIRENA 104 (285)
Q Consensus 83 ~v--------~~-----~e~ADviiiNTCtVr~~A 104 (285)
+. ++ ..-||.+|+.|+.++++.
T Consensus 187 vivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 187 LIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred EEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 11 11 124899999999998765
No 254
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=20.37 E-value=1e+02 Score=28.90 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=39.7
Q ss_pred eeEEEeccccCcchhHHHHHHH-----hhCCee-ecCCCCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCC
Q psy3863 55 VYFEVFGCQMNVNDTEVVWSIL-----KSSGYS-KVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTF 128 (285)
Q Consensus 55 v~i~TyGC~~N~~dsell~~lL-----~~~G~~-~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p 128 (285)
+|...||+ +--+.|.+..+. +..|+. .+.++..||+++|.- +|+.+-...+....+. +. +|
T Consensus 33 lw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVtG-~VT~km~~~L~rlyeq---mP-------~P 99 (264)
T PRK14819 33 VWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAG-TVTKKMAPQVVRLYNQ---MP-------EP 99 (264)
T ss_pred cceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEEec-CCchhhHHHHHHHHHh---cc-------CC
Confidence 56666653 114566665543 345663 567888999987765 4444433333332221 11 14
Q ss_pred CcEEEEEccchhh
Q psy3863 129 PLKIGVLGCMAER 141 (285)
Q Consensus 129 ~~~IvVtGC~aq~ 141 (285)
...|.+.-|....
T Consensus 100 K~VIAvGaCA~~G 112 (264)
T PRK14819 100 RYVISMGACATSG 112 (264)
T ss_pred CeEEEEccccccC
Confidence 4455566686653
No 255
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.15 E-value=2.6e+02 Score=24.04 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=23.7
Q ss_pred eEEEeccccCcchhHHHHHHHhhCCeeec--C---CCCCCcEEEEec
Q psy3863 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKV--N---HPREADVILVMT 97 (285)
Q Consensus 56 ~i~TyGC~~N~~dsell~~lL~~~G~~~v--~---~~e~ADviiiNT 97 (285)
.+..||++ ....+.+.|+..|++.. + +.++.|.|||--
T Consensus 2 ~i~d~g~~----~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG 44 (198)
T cd01748 2 AIIDYGMG----NLRSVANALERLGAEVIITSDPEEILSADKLILPG 44 (198)
T ss_pred EEEeCCCC----hHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECC
Confidence 45667765 34455677777785443 2 345689999944
No 256
>PF07209 DUF1415: Protein of unknown function (DUF1415); InterPro: IPR009858 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=20.09 E-value=1.4e+02 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.029 Sum_probs=21.4
Q ss_pred cCCcchHhHhHHHhcccccccccccceeEEEecccCCCCc
Q psy3863 235 MDDGGGASMSSRQCGRFQSTLIDGHRLCVTQLYLTNQDYP 274 (285)
Q Consensus 235 ~~d~g~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 274 (285)
++|+-.|-++|..++.++..+-- ...++|--=-|.|-
T Consensus 77 l~dF~dy~dfl~~a~~ll~~~~~---eG~~QlAsFHP~y~ 113 (174)
T PF07209_consen 77 LDDFDDYNDFLDMADALLEELGL---EGVYQLASFHPDYQ 113 (174)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCC---CceEEEeccCccCC
Confidence 34777888877776666544421 14566655455443
Done!