Query psy3863
Match_columns 285
No_of_seqs 337 out of 2388
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:23:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 99.0 5.8E-10 2E-14 102.8 7.1 74 8-81 2-86 (304)
2 2qgq_A Protein TM_1862; alpha- 96.9 0.0003 1E-08 64.3 2.2 69 202-277 4-102 (304)
3 3t7v_A Methylornithine synthas 96.5 0.0032 1.1E-07 58.2 6.3 52 10-62 61-117 (350)
4 3iix_A Biotin synthetase, puta 96.5 0.014 4.9E-07 53.4 10.0 52 10-62 53-110 (348)
5 1r30_A Biotin synthase; SAM ra 96.2 0.0096 3.3E-07 55.5 7.6 49 10-58 65-122 (369)
6 3c8f_A Pyruvate formate-lyase 96.0 0.011 3.7E-07 50.6 6.4 41 9-50 19-61 (245)
7 2yx0_A Radical SAM enzyme; pre 95.7 0.035 1.2E-06 51.0 8.9 39 12-50 70-116 (342)
8 3rfa_A Ribosomal RNA large sub 95.4 0.0055 1.9E-07 58.9 2.3 43 7-50 112-154 (404)
9 2z2u_A UPF0026 protein MJ0257; 94.3 0.027 9.1E-07 50.9 3.6 42 9-50 50-101 (311)
10 1olt_A Oxygen-independent copr 94.2 0.043 1.5E-06 52.8 5.0 42 8-50 51-95 (457)
11 1tv8_A MOAA, molybdenum cofact 93.4 0.21 7.3E-06 45.5 8.0 41 10-50 14-61 (340)
12 2a5h_A L-lysine 2,3-aminomutas 92.1 0.37 1.3E-05 45.9 7.9 42 8-49 113-155 (416)
13 2yxb_A Coenzyme B12-dependent 91.5 2.4 8.3E-05 34.9 11.4 108 53-171 19-141 (161)
14 1ccw_A Protein (glutamate muta 84.3 6 0.00021 31.5 9.0 106 54-171 5-129 (137)
15 2xij_A Methylmalonyl-COA mutas 79.8 13 0.00046 38.2 11.6 98 53-161 605-716 (762)
16 4fhd_A Spore photoproduct lyas 79.1 0.93 3.2E-05 42.9 2.6 41 10-50 107-151 (368)
17 1req_A Methylmalonyl-COA mutas 78.1 13 0.00044 38.2 10.8 105 53-170 597-715 (727)
18 2a20_A Regulating synaptic mem 67.9 0.87 3E-05 32.1 -0.5 19 15-33 19-38 (62)
19 2qxy_A Response regulator; reg 62.5 42 0.0014 24.8 8.3 96 66-175 14-121 (142)
20 1e91_A Paired amphipathic heli 55.0 5.8 0.0002 29.5 2.0 35 218-258 49-83 (85)
21 1vk8_A Hypothetical protein TM 51.9 3 0.0001 32.5 -0.0 41 25-65 19-59 (106)
22 1req_B Methylmalonyl-COA mutas 50.2 32 0.0011 34.7 7.1 103 53-172 510-629 (637)
23 3snk_A Response regulator CHEY 47.4 80 0.0028 23.1 7.7 99 63-173 21-131 (135)
24 3kp1_A D-ornithine aminomutase 47.3 1.4E+02 0.0048 30.5 11.0 121 36-171 586-728 (763)
25 3eod_A Protein HNR; response r 43.4 90 0.0031 22.5 9.3 97 65-174 16-125 (130)
26 2epi_A UPF0045 protein MJ1052; 43.3 7.2 0.00025 29.8 0.9 42 24-65 9-50 (100)
27 3hdv_A Response regulator; PSI 42.3 53 0.0018 24.1 5.8 99 65-175 16-127 (136)
28 1yqh_A DUF77, IG hypothetical 41.5 6.4 0.00022 30.7 0.4 42 24-65 10-51 (109)
29 2ibo_A Hypothetical protein SP 40.5 4.4 0.00015 31.4 -0.7 41 25-65 6-46 (104)
30 3kto_A Response regulator rece 40.0 1.1E+02 0.0037 22.4 8.5 96 65-173 15-124 (136)
31 2f05_A Paired amphipathic heli 39.8 13 0.00046 28.7 2.0 34 219-258 50-83 (105)
32 3lpe_B DNA-directed RNA polyme 38.6 12 0.0004 26.1 1.3 33 13-46 9-42 (59)
33 4f54_A Uncharacterized protein 37.5 25 0.00085 30.1 3.5 32 70-102 63-94 (197)
34 3gt7_A Sensor protein; structu 36.4 1.4E+02 0.0046 22.5 8.2 99 65-174 16-126 (154)
35 3f6r_A Flavodoxin; FMN binding 34.7 63 0.0021 24.8 5.3 64 67-137 17-93 (148)
36 2czy_A Paired amphipathic heli 33.4 21 0.00071 25.9 2.0 33 220-258 38-70 (77)
37 4e5v_A Putative THUA-like prot 31.0 61 0.0021 28.9 5.2 31 69-99 22-68 (281)
38 3f6c_A Positive transcription 30.8 1.5E+02 0.0051 21.3 8.6 99 65-176 10-121 (134)
39 4dad_A Putative pilus assembly 30.0 1.4E+02 0.0047 22.0 6.5 98 64-174 28-140 (146)
40 1tmy_A CHEY protein, TMY; chem 29.9 1.4E+02 0.005 20.9 6.5 92 67-171 13-117 (120)
41 1lxj_A YBL001C, hypothetical 1 28.4 19 0.00064 27.7 1.1 42 24-65 8-50 (104)
42 1lxn_A Hypothetical protein MT 28.2 20 0.0007 27.2 1.3 41 25-65 5-46 (99)
43 3jte_A Response regulator rece 27.8 1.8E+02 0.006 21.2 8.7 96 66-174 13-122 (143)
44 1xrs_B D-lysine 5,6-aminomutas 27.6 3.2E+02 0.011 24.1 10.3 120 38-170 103-250 (262)
45 4dik_A Flavoprotein; TM0755, e 26.3 1.2E+02 0.0043 28.2 6.7 99 32-140 239-363 (410)
46 1tqx_A D-ribulose-5-phosphate 26.3 3E+02 0.01 23.4 9.0 62 89-159 138-202 (227)
47 1dbw_A Transcriptional regulat 25.5 1.8E+02 0.0063 20.6 7.9 72 89-173 47-119 (126)
48 2rdm_A Response regulator rece 24.8 1.9E+02 0.0065 20.5 7.5 94 67-174 16-122 (132)
49 3h5i_A Response regulator/sens 24.7 1.9E+02 0.0065 21.1 6.4 97 65-173 14-122 (140)
50 2hna_A Protein MIOC, flavodoxi 24.6 71 0.0024 24.6 4.0 69 67-140 17-93 (147)
51 3lte_A Response regulator; str 23.6 2E+02 0.0069 20.4 7.7 99 65-174 15-124 (132)
52 3ctl_A D-allulose-6-phosphate 23.4 3.5E+02 0.012 23.1 9.2 65 89-158 128-195 (231)
53 2qr3_A Two-component system re 23.0 2.1E+02 0.0073 20.5 6.8 77 90-175 48-126 (140)
54 2pl1_A Transcriptional regulat 22.7 2E+02 0.0068 20.0 6.8 70 89-171 44-114 (121)
55 3gl9_A Response regulator; bet 22.6 2.1E+02 0.0073 20.3 7.0 93 68-171 14-118 (122)
56 3f6p_A Transcriptional regulat 22.3 2.1E+02 0.0073 20.2 7.5 70 89-171 46-115 (120)
57 4dfc_B Uvrabc system protein A 22.2 68 0.0023 25.3 3.4 50 34-84 1-53 (126)
58 3lua_A Response regulator rece 22.2 2.3E+02 0.0078 20.5 11.5 101 65-176 13-128 (140)
59 3noy_A 4-hydroxy-3-methylbut-2 20.8 2E+02 0.0068 26.9 6.7 63 70-144 253-316 (366)
60 2cr7_A Paired amphipathic heli 20.6 40 0.0014 24.5 1.5 33 221-259 45-77 (80)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=98.98 E-value=5.8e-10 Score=102.78 Aligned_cols=74 Identities=27% Similarity=0.532 Sum_probs=42.3
Q ss_pred CCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh---cCce-eeEE-----Eecccc--CcchhHHHHHHH
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA---LSDK-VYFE-----VFGCQM--NVNDTEVVWSIL 76 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~---~g~k-v~i~-----TyGC~~--N~~dsell~~lL 76 (285)
.+.++||+|++||+++|+||++|+.||+.+|+++++|+++++. .|.+ +.+. .||-+. .....++++.+.
T Consensus 2 ~~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~ 81 (304)
T 2qgq_A 2 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLN 81 (304)
T ss_dssp CCSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999876 3543 4432 355332 234566666655
Q ss_pred hhCCe
Q psy3863 77 KSSGY 81 (285)
Q Consensus 77 ~~~G~ 81 (285)
+..|+
T Consensus 82 ~~~gi 86 (304)
T 2qgq_A 82 SLNGE 86 (304)
T ss_dssp TSSSS
T ss_pred hcCCC
Confidence 44454
No 2
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=96.90 E-value=0.0003 Score=64.35 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=41.9
Q ss_pred eeEEEE--cCc---c--c--cccCCcccccChHHHHhhhhccc-----------CCcchHh----------HhHHHhccc
Q psy3863 202 RRSIYV--DGR---W--S--IYVDGRWRRKLGQQMVDGRSMSM-----------DDGGGAS----------MSSRQCGRF 251 (285)
Q Consensus 202 ~~a~~i--~Gc---c--C--~~aRG~~rS~~~~~iv~~~~~~~-----------~d~g~~~----------~ll~~~~~~ 251 (285)
.++++. .|| | | |+.||+.||+|+++|+++++.+. +|+.+|| +|++++.+
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~- 82 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS- 82 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh-
Confidence 456554 799 5 7 78999999999999999987532 2666665 23344322
Q ss_pred ccccccccceeEEEecccCCCCcccc
Q psy3863 252 QSTLIDGHRLCVTQLYLTNQDYPIPR 277 (285)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~n~~~~~~~ 277 (285)
+| | .-.+|+..|||.++-+.
T Consensus 83 ---~~-g--i~~ir~~~~~p~~l~~e 102 (304)
T 2qgq_A 83 ---LN-G--EFWIRVMYLHPDHLTEE 102 (304)
T ss_dssp ---SS-S--SCEEEECCCCGGGCCHH
T ss_pred ---cC-C--CcEEEEeeeecccCCHH
Confidence 33 2 12578888999877544
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=96.55 E-value=0.0032 Score=58.24 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=37.9
Q ss_pred eEEEEEccccCCCCCcccccCccccCC-CCCChhhhhhHHhh---cCce-eeEEEecc
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE-RSRPMQSILDEVRA---LSDK-VYFEVFGC 62 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~-~Sr~~~~IV~e~~~---~g~k-v~i~TyGC 62 (285)
..++|.++.||+++|+||..+...+.. ...++++|+++++. .|.+ +.+ +.|-
T Consensus 61 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l-~gGe 117 (350)
T 3t7v_A 61 LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDL-TMGE 117 (350)
T ss_dssp EEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEE-EECC
T ss_pred EEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEE-eeCC
Confidence 357899999999999999987665322 23799999999876 3443 444 5554
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=96.45 E-value=0.014 Score=53.39 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=38.2
Q ss_pred eEEEEEccccCCCCCcccccCccccCCC--CCChhhhhhHHhh---cCce-eeEEEecc
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRER--SRPMQSILDEVRA---LSDK-VYFEVFGC 62 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~~--Sr~~~~IV~e~~~---~g~k-v~i~TyGC 62 (285)
.++.|.++.||+++|+||..+...+... ..++++|++++.. .|.+ +.+ +-|-
T Consensus 53 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~-~gGe 110 (348)
T 3iix_A 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVL-QSGE 110 (348)
T ss_dssp EEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEE-EESC
T ss_pred EEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEE-EeCC
Confidence 3567999999999999999888766432 3689999998865 3543 555 4453
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=96.22 E-value=0.0096 Score=55.55 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=36.5
Q ss_pred eEEEEEc-cccCCCCCcccccCccc--c--CCCCCChhhhhhHHhh---cCc-eeeEE
Q psy3863 10 VSAFVSI-MRGCDNMCTYCIVPFTR--G--RERSRPMQSILDEVRA---LSD-KVYFE 58 (285)
Q Consensus 10 ~~a~v~i-~~GC~~~CsyCiip~~r--G--~~~Sr~~~~IV~e~~~---~g~-kv~i~ 58 (285)
..+.|.| +.||+++|+||..+... + +.+.+++++|+++++. .|. .+++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~ 122 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMG 122 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 3677887 99999999999988742 3 3566899999988764 343 35554
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=96.01 E-value=0.011 Score=50.59 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=31.4
Q ss_pred CeEEEEEccccCCCCCcccccCccc--cCCCCCChhhhhhHHhh
Q psy3863 9 SVSAFVSIMRGCDNMCTYCIVPFTR--GRERSRPMQSILDEVRA 50 (285)
Q Consensus 9 ~~~a~v~i~~GC~~~CsyCiip~~r--G~~~Sr~~~~IV~e~~~ 50 (285)
..+.++ +..|||.+|+||..+... ++.+..+++++++++..
T Consensus 19 g~~~~i-~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~ 61 (245)
T 3c8f_A 19 GIRFIT-FFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVT 61 (245)
T ss_dssp SEEEEE-EESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGG
T ss_pred CcEEEE-EeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHH
Confidence 355565 556999999999988753 34567789999999876
No 7
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.035 Score=50.96 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=29.6
Q ss_pred EEEEcc---ccCCCCCcccccCccc-----cCCCCCChhhhhhHHhh
Q psy3863 12 AFVSIM---RGCDNMCTYCIVPFTR-----GRERSRPMQSILDEVRA 50 (285)
Q Consensus 12 a~v~i~---~GC~~~CsyCiip~~r-----G~~~Sr~~~~IV~e~~~ 50 (285)
.+|.++ .||+.+|+||..+... ++.+..++++|++++..
T Consensus 70 ~~l~i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~ 116 (342)
T 2yx0_A 70 RCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIK 116 (342)
T ss_dssp GEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHH
T ss_pred CeEEEEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHH
Confidence 445566 7999999999998653 14566789999988754
No 8
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=95.42 E-value=0.0055 Score=58.87 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=35.7
Q ss_pred CCCeEEEEEccccCCCCCcccccCccccCCCCCChhhhhhHHhh
Q psy3863 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRA 50 (285)
Q Consensus 7 ~~~~~a~v~i~~GC~~~CsyCiip~~rG~~~Sr~~~~IV~e~~~ 50 (285)
.++....|..|.||+.+|+||..+.. |..+..++++|++++..
T Consensus 112 ~~r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~ 154 (404)
T 3rfa_A 112 DDRATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWR 154 (404)
T ss_dssp SSCEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHH
Confidence 34678889999999999999998854 55678899999999754
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=94.27 E-value=0.027 Score=50.88 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=23.6
Q ss_pred CeEEEEEcc-ccCCCCCcccccCccc--c-------CCCCCChhhhhhHHhh
Q psy3863 9 SVSAFVSIM-RGCDNMCTYCIVPFTR--G-------RERSRPMQSILDEVRA 50 (285)
Q Consensus 9 ~~~a~v~i~-~GC~~~CsyCiip~~r--G-------~~~Sr~~~~IV~e~~~ 50 (285)
+....+.++ .|||.+|+||..+... | ..+..+++++++++.+
T Consensus 50 ~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~ 101 (311)
T 2z2u_A 50 HRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILA 101 (311)
T ss_dssp GGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHH
T ss_pred CCeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHH
Confidence 445678888 7999999999988633 2 2467889999987643
No 10
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=94.15 E-value=0.043 Score=52.81 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCeEEEEEccccCCCCCcccccCccccC---CCCCChhhhhhHHhh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGR---ERSRPMQSILDEVRA 50 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG~---~~Sr~~~~IV~e~~~ 50 (285)
.+...||.|. +|+++|+||..+...++ .+++.++.+++|++.
T Consensus 51 ~~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~ 95 (457)
T 1olt_A 51 RPLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVH 95 (457)
T ss_dssp SCEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHH
Confidence 4577899998 69999999999875432 346678899988865
No 11
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=93.41 E-value=0.21 Score=45.48 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=29.3
Q ss_pred eEEEEEccccCCCCCcccccCcc-------ccCCCCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFT-------RGRERSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~-------rG~~~Sr~~~~IV~e~~~ 50 (285)
....|.+.++||.+|+||..+.. .++....+.+++.+.+..
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~ 61 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKV 61 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHH
Confidence 45788999999999999987652 133455677777665543
No 12
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=92.08 E-value=0.37 Score=45.89 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCeEEEEEccccCCCCCcccccCcccc-CCCCCChhhhhhHHh
Q psy3863 8 DSVSAFVSIMRGCDNMCTYCIVPFTRG-RERSRPMQSILDEVR 49 (285)
Q Consensus 8 ~~~~a~v~i~~GC~~~CsyCiip~~rG-~~~Sr~~~~IV~e~~ 49 (285)
-+.+..+.++.||+.+|.||-.+...| +....+.+++.+.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~ 155 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAID 155 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHH
Confidence 345788999999999999998776555 335577788755543
No 13
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=91.51 E-value=2.4 Score=34.90 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=67.3
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.++-+.|.|-+.-.--...++.+|+..||+.+.- .+.+|+|.+ |++.+ .....+...+..+++.
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~-~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNG-AHLHLMKRLMAKLREL 96 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSS-CHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeech-hhHHHHHHHHHHHHhc
Confidence 4577777765443334577888899999988732 246787766 44444 3455666667766532
Q ss_pred hhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCc-CCHHHHHHh
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSY-KDLPRLLAL 171 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~-~~l~e~v~~ 171 (285)
. .++.+|+|.|=.+..+.+. +++ .++|.++++..- ....+++..
T Consensus 97 g-------~~~i~v~vGG~~~~~~~~~-l~~-~G~d~v~~~~~~~~~~~~~~~~ 141 (161)
T 2yxb_A 97 G-------ADDIPVVLGGTIPIPDLEP-LRS-LGIREIFLPGTSLGEIIEKVRK 141 (161)
T ss_dssp T-------CTTSCEEEEECCCHHHHHH-HHH-TTCCEEECTTCCHHHHHHHHHH
T ss_pred C-------CCCCEEEEeCCCchhcHHH-HHH-CCCcEEECCCCCHHHHHHHHHH
Confidence 1 1257899999766544443 333 479988987652 445555544
No 14
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=84.35 E-value=6 Score=31.46 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=58.8
Q ss_pred eeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHhh
Q psy3863 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSMK 119 (285)
Q Consensus 54 kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~k 119 (285)
++-+.|.|-+.-.--...++.+|+..||+.+.- .+++|+|.+ |++.+ .....+.+.++.+++..
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~-~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYG-QGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSS-THHHHHTTHHHHHHHTT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCc-CcHHHHHHHHHHHHhcC
Confidence 455555554322223456667777788776511 245787655 44443 44456666666665321
Q ss_pred hhhccCCCCCcEEEEEccc---hhhhh--HHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 120 QIHKKHRTFPLKIGVLGCM---AERLK--KSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 120 r~~~~~~~p~~~IvVtGC~---aq~~~--~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
. ++.+|+|.|=. ++... .+.+++. ++|.++++.. ...++++.
T Consensus 83 ~-------~~i~v~vGG~~~~~~~~~~~~~~~~~~~-G~d~~~~~g~--~~~~~~~~ 129 (137)
T 1ccw_A 83 L-------EGILLYVGGNIVVGKQHWPDVEKRFKDM-GYDRVYAPGT--PPEVGIAD 129 (137)
T ss_dssp C-------TTCEEEEEESCSSSSCCHHHHHHHHHHT-TCSEECCTTC--CHHHHHHH
T ss_pred C-------CCCEEEEECCCcCchHhhhhhHHHHHHC-CCCEEECCCC--CHHHHHHH
Confidence 1 25788888854 22111 2334444 7999998875 45555543
No 15
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=79.77 E-value=13 Score=38.21 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=62.6
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.+|.+.|.|-+.-.--...+..+|+..||++++. .+++|+|.+ |+.-......+...+..++..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVgl--Ssl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGV--STLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEE--EECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEE--eeecHHHHHHHHHHHHHHHhc
Confidence 3588899987643344678888999999998732 257888877 444434444566666666532
Q ss_pred hhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCC
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDS 161 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~ 161 (285)
.. .+.+|+|.|=.+..+.+.+ ++. ++|.++++..
T Consensus 683 G~-------~dv~VivGG~~P~~d~~~l-~~~-GaD~~f~pgt 716 (762)
T 2xij_A 683 GR-------PDILVMCGGVIPPQDYEFL-FEV-GVSNVFGPGT 716 (762)
T ss_dssp TC-------TTSEEEEEESCCGGGHHHH-HHH-TCCEEECTTC
T ss_pred CC-------CCCEEEEeCCCCcccHHHH-HhC-CCCEEeCCCC
Confidence 21 2567778774444334333 333 7999999764
No 16
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=79.10 E-value=0.93 Score=42.85 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=28.7
Q ss_pred eEEEEEccccCCCCCcccccCccccCC----CCCChhhhhhHHhh
Q psy3863 10 VSAFVSIMRGCDNMCTYCIVPFTRGRE----RSRPMQSILDEVRA 50 (285)
Q Consensus 10 ~~a~v~i~~GC~~~CsyCiip~~rG~~----~Sr~~~~IV~e~~~ 50 (285)
.--++....||.+.|+||-....-|.. .-...+++++++..
T Consensus 107 ~~Y~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~ 151 (368)
T 4fhd_A 107 AEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQK 151 (368)
T ss_dssp EEEECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHH
T ss_pred CceeeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHH
Confidence 455788899999999999666544421 23457888888644
No 17
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=78.10 E-value=13 Score=38.18 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred ceeeEEEeccccCcchhHHHHHHHhhCCeeecCC--------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNH--------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~~N~~dsell~~lL~~~G~~~v~~--------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.+|.+.|.|-+.-.--...+..+|+..||+++.. .+++|+|.+ |+.-...-..+...+..++..
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVgl--Ssl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEE--EECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEE--eeecHhHHHHHHHHHHHHHhc
Confidence 3588899987643344577888999999998732 257888877 334434444566666666533
Q ss_pred hhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHH
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA 170 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~ 170 (285)
.. .+.+|+|.|-.+..+.+. +++ -++|.++++.. .+.+++.
T Consensus 675 G~-------~~i~VivGG~~p~~d~~~-l~~-~GaD~~f~~gt--~~~e~a~ 715 (727)
T 1req_A 675 GR-------PDILITVGGVIPEQDFDE-LRK-DGAVEIYTPGT--VIPESAI 715 (727)
T ss_dssp TC-------TTSEEEEEESCCGGGHHH-HHH-TTEEEEECTTC--CHHHHHH
T ss_pred CC-------CCCEEEEcCCCccccHHH-HHh-CCCCEEEcCCc--cHHHHHH
Confidence 21 256888888555544443 333 48999999865 4555544
No 18
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=67.88 E-value=0.87 Score=32.10 Aligned_cols=19 Identities=37% Similarity=1.041 Sum_probs=17.2
Q ss_pred EccccCCCCCcccccCc-cc
Q psy3863 15 SIMRGCDNMCTYCIVPF-TR 33 (285)
Q Consensus 15 ~i~~GC~~~CsyCiip~-~r 33 (285)
|.+|||-+.|.||.+.+ +|
T Consensus 19 KFADG~Gh~C~yCk~r~CaR 38 (62)
T 2a20_A 19 KFADGCGHNCSYCQTKFCAR 38 (62)
T ss_dssp CCCSSCCEEBTTTCCEECTT
T ss_pred eeccCCCccccccCCeeecc
Confidence 56899999999999998 77
No 19
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=62.46 E-value=42 Score=24.84 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred cchhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE-
Q psy3863 66 VNDTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG- 133 (285)
Q Consensus 66 ~~dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv- 133 (285)
....+.+...|+..||... .+ ....|++|++. .-. ......++.++.. .++..|+
T Consensus 14 ~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~---~~g~~~~~~l~~~--------~~~~pii~ 80 (142)
T 2qxy_A 14 RITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEG---EESLNLIRRIREE--------FPDTKVAV 80 (142)
T ss_dssp HHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTT---HHHHHHHHHHHHH--------CTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCC---CcHHHHHHHHHHH--------CCCCCEEE
Confidence 3445566666666666543 11 23469999997 322 2334555555421 1344544
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccC
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~ 175 (285)
+++-.......+.++. .-.|++.-+-....+.+.|+....+
T Consensus 81 ls~~~~~~~~~~~~~~-g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKA-GAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EESCCCHHHHHHHHHH-TCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHC-CcceeEeCCCCHHHHHHHHHHHHhh
Confidence 4443222222233332 2346777777777777777765543
No 20
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=55.00 E-value=5.8 Score=29.51 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.2
Q ss_pred cccccChHHHHhhhhcccCCcchHhHhHHHhcccccccccc
Q psy3863 218 RWRRKLGQQMVDGRSMSMDDGGGASMSSRQCGRFQSTLIDG 258 (285)
Q Consensus 218 ~~rS~~~~~iv~~~~~~~~d~g~~~~ll~~~~~~~~~~~~~ 258 (285)
.+++.++++|++||..+|.| +-+||.....+ ||++
T Consensus 49 ~~~~~s~~eV~~~V~~Lf~~---hpDLl~~F~~F---LP~~ 83 (85)
T 1e91_A 49 PFRGMSEEEVFTEVANLFRG---QEDLLSEFGQF---LPEA 83 (85)
T ss_dssp CSSCCCHHHHHHHHHHHTSS---CHHHHHHHHHH---SCCC
T ss_pred ccccCcHHHHHHHHHHHHcc---CHHHHHHHHHH---CcCc
Confidence 34567899999999999987 67888887666 6765
No 21
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=51.92 E-value=3 Score=32.54 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=32.0
Q ss_pred cccccCccccCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 25 TYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 25 syCiip~~rG~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
.||++|...|.+.|..++++++-+++.|.++.+..+|-.+.
T Consensus 19 ~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~pmgT~IE 59 (106)
T 1vk8_A 19 SIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVGPSNTTVE 59 (106)
T ss_dssp EEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeCCCccEEE
Confidence 58899987777778888888887887888888877776554
No 22
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=50.20 E-value=32 Score=34.69 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=63.6
Q ss_pred ceeeEEEeccc-cCcchhHHHHHHHhhCCeeecCC-------------CCCCcEEEEeccccccchHHHHHHHHHHHHHh
Q psy3863 53 DKVYFEVFGCQ-MNVNDTEVVWSILKSSGYSKVNH-------------PREADVILVMTCAIRENAEGKVWDRLRFYRSM 118 (285)
Q Consensus 53 ~kv~i~TyGC~-~N~~dsell~~lL~~~G~~~v~~-------------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~ 118 (285)
.++.+.+.|-+ .-..-...+..+|+..||++++. .+++|+|.| |+.-......+-..+..++..
T Consensus 510 ~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~a 587 (637)
T 1req_B 510 PKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKAA 587 (637)
T ss_dssp CBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHhC
Confidence 35888899865 32234678888999999998754 257888877 544443334455555555421
Q ss_pred hhhhccCCCCCcEEEEEccchhhh---hHHHHhhCCCccEEECCCCcCCHHHHHHhh
Q psy3863 119 KQIHKKHRTFPLKIGVLGCMAERL---KKSLLEKEQALDLVAGPDSYKDLPRLLALT 172 (285)
Q Consensus 119 kr~~~~~~~p~~~IvVtGC~aq~~---~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~ 172 (285)
.. .+|+|+| .+..+ .+++ ++ ++|.++.+.. ...+++..+
T Consensus 588 --------G~-~~V~vgG-~P~~d~~~~~~~-~~--G~D~~~~~g~--~~~~~l~~l 629 (637)
T 1req_B 588 --------GA-KALYLSG-AFKEFGDDAAEA-EK--LIDGRLFMGM--DVVDTLSST 629 (637)
T ss_dssp --------TC-SEEEEES-CGGGGGGGHHHH-HH--HCCCEECTTC--CHHHHHHHH
T ss_pred --------CC-CeEEEeC-CCCccchhhHHH-Hh--ccceEecCCc--CHHHHHHHH
Confidence 12 4678888 34432 2343 44 8998887764 456665543
No 23
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=47.41 E-value=80 Score=23.07 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=55.5
Q ss_pred ccCcchhHHHHHHHhhCC-eeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy3863 63 QMNVNDTEVVWSILKSSG-YSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL 130 (285)
Q Consensus 63 ~~N~~dsell~~lL~~~G-~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~ 130 (285)
+-+....+.+..+|+..| |... .+ ....|++|+..--- +..-+..+++++... + .-.
T Consensus 21 dd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~----~~~g~~~~~~l~~~~----~---~~~ 89 (135)
T 3snk_A 21 SSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGG----DLLGKPGIVEARALW----A---TVP 89 (135)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETT----GGGGSTTHHHHHGGG----T---TCC
T ss_pred cCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCC----CchHHHHHHHHHhhC----C---CCc
Confidence 345566788888899899 8764 22 23468999876431 122334445554221 1 123
Q ss_pred EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhc
Q psy3863 131 KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173 (285)
Q Consensus 131 ~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~ 173 (285)
.|++++-.......+.++ ..-.|++.-+-....+.+.|+...
T Consensus 90 ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVR-MNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp EEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHH-cCcHhhccCCCCHHHHHHHHHHHh
Confidence 566776554433333333 223467777777777776666543
No 24
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=47.29 E-value=1.4e+02 Score=30.51 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=69.6
Q ss_pred CCCCChhhhhhHHhhcCceeeEEEeccccCcchhH------HHHHHHhhCCeeecCC--------------CCCCcEEEE
Q psy3863 36 ERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTE------VVWSILKSSGYSKVNH--------------PREADVILV 95 (285)
Q Consensus 36 ~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N~~dse------ll~~lL~~~G~~~v~~--------------~e~ADviii 95 (285)
..-.+.+++-+-+....-+|-+.|-|-+. .|-- +++.+|+..||+++.- .+.+|+|.+
T Consensus 586 ~~~ls~eEi~~~i~e~kGKVVIATVgGD~--HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL 663 (763)
T 3kp1_A 586 PEILSEDEIREDIEKTPLKIVAATVGEDE--HSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA 663 (763)
T ss_dssp --CCCHHHHHHHHHHSCCEEEEEEBTTCC--CCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE
T ss_pred cCCCCHHHHHhhhhccCCEEEEEeCCCCh--hhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 44455566655565554577777776432 2222 2356789999998622 356888776
Q ss_pred eccccccc--hHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 96 MTCAIREN--AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 96 NTCtVr~~--Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
|+..+.. .-..+...+..+++..- +...+|+|.|=... +++.+ .-++|.++++.. ..+++++.
T Consensus 664 -SsLLTt~dihL~~MkevIelLrE~Gl------rDkIkVIVGGa~~t---qd~Ak-eIGADa~f~DAT--eAVeVA~~ 728 (763)
T 3kp1_A 664 -STIISHDDIHYKNMKRIHELAVEKGI------RDKIMIGCGGTQVT---PEVAV-KQGVDAGFGRGS--KGIHVATF 728 (763)
T ss_dssp -ECCCCGGGHHHHHHHHHHHHHHHTTC------TTTSEEEEECTTCC---HHHHH-TTTCSEEECTTC--CHHHHHHH
T ss_pred -eccccCchhhHHHHHHHHHHHHhcCC------CCCCEEEEECCCCC---HHHHH-HcCCcEEECCcc--hHHHHHHH
Confidence 6666653 33455555665653221 12357888876654 23333 458999998755 34555543
No 25
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.39 E-value=90 Score=22.48 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=48.8
Q ss_pred CcchhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCC-cEE
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKI 132 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~-~~I 132 (285)
+....+.+..+|+..||... .+ ....|++|++.-.- +..-+..+++++.. .+. ..|
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~----~~~g~~~~~~l~~~--------~~~~~ii 83 (130)
T 3eod_A 16 EQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP----RMNGLKLLEHIRNR--------GDQTPVL 83 (130)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHT--------TCCCCEE
T ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC----CCCHHHHHHHHHhc--------CCCCCEE
Confidence 33445566666666666543 11 23468999886431 22334555555421 123 355
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCC-CcCCHHHHHHhhcc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPD-SYKDLPRLLALTYS 174 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~-~~~~l~e~v~~~~~ 174 (285)
++++-.......+.++.. -.|++.-+- ....+.+.++....
T Consensus 84 ~~t~~~~~~~~~~~~~~g-~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 84 VISATENMADIAKALRLG-VEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp EEECCCCHHHHHHHHHHC-CSEEEESCC---CHHHHHHHHHHC
T ss_pred EEEcCCCHHHHHHHHHcC-CCEEEeCCCCcHHHHHHHHHHHhc
Confidence 666655443333333332 245666666 77888888776554
No 26
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=43.33 E-value=7.2 Score=29.84 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=32.8
Q ss_pred CcccccCccccCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 24 CTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 24 CsyCiip~~rG~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
..||++|..-|...|..++++++-+++.|-++.+..+|-.+-
T Consensus 9 ve~sv~Plg~~~svs~~Va~~i~~l~~sGl~y~~~pm~T~IE 50 (100)
T 2epi_A 9 AEVSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLE 50 (100)
T ss_dssp EEEEEEEECBSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEE
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHcCCCeEecCCccEEE
Confidence 368999997556777778888888888888888888876554
No 27
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=42.32 E-value=53 Score=24.05 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=51.1
Q ss_pred CcchhHHHHHHHhhCCeeec--CC----------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-E
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH----------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-K 131 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~----------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~ 131 (285)
+....+.+..+|+..||..+ .+ ..+.|++|++.---. . .-+..++++++.. .+.. .
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~-~---~g~~~~~~l~~~~-------~~~~~i 84 (136)
T 3hdv_A 16 NAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQP-E---SGLDLIRTIRASE-------RAALSI 84 (136)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSS-S---CHHHHHHHHHTST-------TTTCEE
T ss_pred CHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCC-C---CHHHHHHHHHhcC-------CCCCCE
Confidence 34455666666666666543 11 122688888764322 1 2344555554221 1344 4
Q ss_pred EEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccC
Q psy3863 132 IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSN 175 (285)
Q Consensus 132 IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~ 175 (285)
|++++-.......+.++ ..-.+++.-+-....+.+.|+....+
T Consensus 85 i~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMH-LGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEESSCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCCChHHHHHHHh-CCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 45555443333333333 22346777777877888777765544
No 28
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=41.49 E-value=6.4 Score=30.71 Aligned_cols=42 Identities=7% Similarity=0.215 Sum_probs=32.1
Q ss_pred CcccccCccccCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 24 CTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 24 CsyCiip~~rG~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
-.||++|..-|...|..++++++-+++.|.++.+..+|-.+-
T Consensus 10 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IE 51 (109)
T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLE 51 (109)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEE
Confidence 368999997666777778888877877888888877776554
No 29
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=40.45 E-value=4.4 Score=31.36 Aligned_cols=41 Identities=10% Similarity=0.281 Sum_probs=32.2
Q ss_pred cccccCccccCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 25 TYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 25 syCiip~~rG~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
.||++|..-|...|..++++++-+++.|.++.+..+|-.+-
T Consensus 6 e~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IE 46 (104)
T 2ibo_A 6 ALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLE 46 (104)
T ss_dssp EEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEE
Confidence 58999997556788888888888888888888888776554
No 30
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.02 E-value=1.1e+02 Score=22.43 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=54.1
Q ss_pred CcchhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchH--HHHHHHHHHHHHhhhhhccCCCCCc-
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAE--GKVWDRLRFYRSMKQIHKKHRTFPL- 130 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae--~k~~~~I~~l~~~kr~~~~~~~p~~- 130 (285)
+....+.+..+|+..||... .+ ....|++|+..-. .+ ..-+..+++++... ++.
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l----~~~~~~g~~~~~~l~~~~--------~~~~ 82 (136)
T 3kto_A 15 QKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHL----EDKKDSGIELLETLVKRG--------FHLP 82 (136)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTG----GGBTTHHHHHHHHHHHTT--------CCCC
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcC----CCCCccHHHHHHHHHhCC--------CCCC
Confidence 44556777888888887654 11 2345899887533 12 33455566665321 233
Q ss_pred EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhc
Q psy3863 131 KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173 (285)
Q Consensus 131 ~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~ 173 (285)
.|++++........+.++ ..-.|++.-+-....+.+.|+...
T Consensus 83 ii~~s~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~i~~~~ 124 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMR-ASAADFIEKPFIEHVLVHDVQQII 124 (136)
T ss_dssp EEEEESSCCHHHHHHHHH-TTCSEEEESSBCHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHH-cChHHheeCCCCHHHHHHHHHHHH
Confidence 566776554433333333 223467777777777777776544
No 31
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=39.83 E-value=13 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.5
Q ss_pred ccccChHHHHhhhhcccCCcchHhHhHHHhcccccccccc
Q psy3863 219 WRRKLGQQMVDGRSMSMDDGGGASMSSRQCGRFQSTLIDG 258 (285)
Q Consensus 219 ~rS~~~~~iv~~~~~~~~d~g~~~~ll~~~~~~~~~~~~~ 258 (285)
++..++++|+++|..+|.| +-+||.....+ ||++
T Consensus 50 ~~~~s~~eV~~~V~~LF~~---hpDLl~eFn~F---LP~~ 83 (105)
T 2f05_A 50 FRGMSEEEVFTEVANLFRG---QEDLLSEFGQF---LPEA 83 (105)
T ss_dssp SCCCCHHHHHHHHHHHTTT---CHHHHHHHHHH---SCGG
T ss_pred cccCcHHHHHHHHHHHHcc---CHHHHHHHHHH---CCCc
Confidence 3456799999999999987 67888887766 4554
No 32
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=38.56 E-value=12 Score=26.12 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.3
Q ss_pred EEEccccCCCCCcccccCccccCCCCC-Chhhhhh
Q psy3863 13 FVSIMRGCDNMCTYCIVPFTRGRERSR-PMQSILD 46 (285)
Q Consensus 13 ~v~i~~GC~~~CsyCiip~~rG~~~Sr-~~~~IV~ 46 (285)
+|+..+||+| |.+|.++...|-..-. |.++-+.
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~i~dP~~SwvA 42 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLIVINPEKSEIA 42 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEEESCTTTCHHH
T ss_pred cccCCCCCCC-CCCCccCCEeeEEEEeCCchhHHH
Confidence 4677789999 9999999899965333 3334343
No 33
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=37.46 E-value=25 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCeeecCCCCCCcEEEEecccccc
Q psy3863 70 EVVWSILKSSGYSKVNHPREADVILVMTCAIRE 102 (285)
Q Consensus 70 ell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~ 102 (285)
..+...|.+.||.++.+.+.||++|=-+ .+++
T Consensus 63 ~aV~~~L~akG~~~v~~~~~pDllV~~~-~~~~ 94 (197)
T 4f54_A 63 AAYTENMEAXGYQPAADXESADLGIQVS-YIAS 94 (197)
T ss_dssp HHHHHHHHHTTCEECSSTTTCSEEEEEE-EESC
T ss_pred HHHHHHHHhcCceecCCCCCCCEEEEEE-EEEE
Confidence 4556667889999998889999976544 4443
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.37 E-value=1.4e+02 Score=22.52 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=53.6
Q ss_pred CcchhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EE
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KI 132 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~I 132 (285)
+....+.+..+|+..||... .+ ....|+||++.-.-.. .-+..++.++.... .+.. .|
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~----~g~~~~~~lr~~~~------~~~~pii 85 (154)
T 3gt7_A 16 SPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEM----DGYALCRWLKGQPD------LRTIPVI 85 (154)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSS----CHHHHHHHHHHSTT------TTTSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCC----CHHHHHHHHHhCCC------cCCCCEE
Confidence 44455666667776676543 11 2346999998643221 23444455543211 1233 56
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhcc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~ 174 (285)
++++-.......+.++.. -.|++.-+-....+.+.|+....
T Consensus 86 ~~s~~~~~~~~~~~~~~g-~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 86 LLTILSDPRDVVRSLECG-ADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EEECCCSHHHHHHHHHHC-CSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHCC-CCEEEeCCCCHHHHHHHHHHHHH
Confidence 666654443333433332 35678878787778777766543
No 35
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=34.67 E-value=63 Score=24.82 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=40.6
Q ss_pred chhHHHHHHHhhCCeeec---------CCCC-CCcEEEEecccccc---chHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 67 NDTEVVWSILKSSGYSKV---------NHPR-EADVILVMTCAIRE---NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v---------~~~e-~ADviiiNTCtVr~---~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
...+.+++.|.+.|++.. ++.. ++|.+||=|.+.-. .....+...+.++.... -.+++++
T Consensus 17 ~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~-------l~~k~~~ 89 (148)
T 3f6r_A 17 SIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIG-------LAGRKVA 89 (148)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTC-------CTTCEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccC-------CCCCEEE
Confidence 345666666777775432 2455 88999999988763 55566777776654210 1256777
Q ss_pred EEcc
Q psy3863 134 VLGC 137 (285)
Q Consensus 134 VtGC 137 (285)
|-|+
T Consensus 90 vfg~ 93 (148)
T 3f6r_A 90 AFAS 93 (148)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7777
No 36
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=33.38 E-value=21 Score=25.87 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=27.2
Q ss_pred cccChHHHHhhhhcccCCcchHhHhHHHhcccccccccc
Q psy3863 220 RRKLGQQMVDGRSMSMDDGGGASMSSRQCGRFQSTLIDG 258 (285)
Q Consensus 220 rS~~~~~iv~~~~~~~~d~g~~~~ll~~~~~~~~~~~~~ 258 (285)
++.++.++++|+..+|.| +-+||.....+ ||+|
T Consensus 38 ~~~~~~~v~~rv~~Lf~~---hpdLi~gFn~F---LP~~ 70 (77)
T 2czy_A 38 QSIDTPGVIRRVSQLFHE---HPDLIVGFNAF---LPLG 70 (77)
T ss_dssp TCSCHHHHHHHHHHHTTT---CHHHHHHHHTT---SCSS
T ss_pred cCCCHHHHHHHHHHHHcC---CHHHHHHHHHH---CCCC
Confidence 357889999999999986 67899887776 7877
No 37
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=31.01 E-value=61 Score=28.88 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=22.1
Q ss_pred hHHHHHHHhhCC-eeec--C-------------CCCCCcEEEEeccc
Q psy3863 69 TEVVWSILKSSG-YSKV--N-------------HPREADVILVMTCA 99 (285)
Q Consensus 69 sell~~lL~~~G-~~~v--~-------------~~e~ADviiiNTCt 99 (285)
.+.|+++|++.| |+++ + +....|+||+|++.
T Consensus 22 ~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~ 68 (281)
T 4e5v_A 22 HVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNG 68 (281)
T ss_dssp HHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCC
Confidence 467777887777 6553 2 35678999999974
No 38
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.76 E-value=1.5e+02 Score=21.29 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=52.7
Q ss_pred CcchhHHHHHHHhhCCeeec---CCCC---------CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcE-
Q psy3863 65 NVNDTEVVWSILKSSGYSKV---NHPR---------EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLK- 131 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v---~~~e---------~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~- 131 (285)
+....+.+..+|+..||..+ .+.+ ..|++|++.-.-. ..-...+++++.. .|+..
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~----~~g~~~~~~l~~~--------~~~~~i 77 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPG----VNGIQVLETLRKR--------QYSGII 77 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSS----SCHHHHHHHHHHT--------TCCSEE
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCC----CChHHHHHHHHhc--------CCCCeE
Confidence 44456677777777777653 3332 3589998864322 2234445555421 13444
Q ss_pred EEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCC
Q psy3863 132 IGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176 (285)
Q Consensus 132 IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~ 176 (285)
|++++-.......+.++ ..-.|++.-+-....+.+.++...++.
T Consensus 78 i~~s~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCAD-AGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EEEECC---CTHHHHHH-TTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EEEeCCCChHHHHHHHH-hCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 44555443323333333 223456777777777888777666554
No 39
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=29.96 E-value=1.4e+02 Score=22.02 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=53.2
Q ss_pred cCcchhHHHHHHHhhCC-eeec--CC----------C-CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCC
Q psy3863 64 MNVNDTEVVWSILKSSG-YSKV--NH----------P-READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP 129 (285)
Q Consensus 64 ~N~~dsell~~lL~~~G-~~~v--~~----------~-e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~ 129 (285)
-+....+.+..+|+..| |..+ .+ . ...|+||++.-- .+..-+..+++++.. .+.
T Consensus 28 d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l----~~~~g~~~~~~l~~~--------~~~ 95 (146)
T 4dad_A 28 EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA----LDTAELAAIEKLSRL--------HPG 95 (146)
T ss_dssp SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT----CCHHHHHHHHHHHHH--------CTT
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC----CCccHHHHHHHHHHh--------CCC
Confidence 34455677788888777 7654 11 1 456899987643 123345555555421 134
Q ss_pred c-EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhcc
Q psy3863 130 L-KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174 (285)
Q Consensus 130 ~-~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~ 174 (285)
. .|++++-.......+.++ ..-.|++.-+-....|.+.|+....
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 96 LTCLLVTTDASSQTLLDAMR-AGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp CEEEEEESCCCHHHHHHHHT-TTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHH-hCCceeEcCCCCHHHHHHHHHHHHh
Confidence 4 445555443322223222 2224567777777777777765543
No 40
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=29.85 E-value=1.4e+02 Score=20.87 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=43.0
Q ss_pred chhHHHHHHHhhCCeeec---CCC---------CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EEE
Q psy3863 67 NDTEVVWSILKSSGYSKV---NHP---------READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KIG 133 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v---~~~---------e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~Iv 133 (285)
...+.+..+|+..||..+ .+. ...|+++++---- . ..-...++++++.. |.. .|+
T Consensus 13 ~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~-~---~~g~~~~~~l~~~~--------~~~~ii~ 80 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMP-E---MNGIDAIKEIMKID--------PNAKIIV 80 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCG-G---GCHHHHHHHHHHHC--------TTCCEEE
T ss_pred HHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCC-C---CcHHHHHHHHHhhC--------CCCeEEE
Confidence 344556666666666522 221 1358888875431 1 11234444443211 223 555
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
+++........+..+ ..-.|++.-+-....+.+.++.
T Consensus 81 ~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~ 117 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIK-AGAKDFIVKPFQPSRVVEALNK 117 (120)
T ss_dssp EECTTCHHHHHHHHH-TTCCEEEESSCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHH-hCcceeEeCCCCHHHHHHHHHH
Confidence 665543322233332 2224566666666555555543
No 41
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=28.43 E-value=19 Score=27.66 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=33.3
Q ss_pred CcccccCcccc-CCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 24 CTYCIVPFTRG-RERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 24 CsyCiip~~rG-~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
..||++|...| .+.|.-++++++-+++.|.++.+..+|-.+-
T Consensus 8 ve~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IE 50 (104)
T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIE 50 (104)
T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEE
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEE
Confidence 46899999754 6788888888888888888888888876654
No 42
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=28.22 E-value=20 Score=27.17 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=32.7
Q ss_pred cccccCccc-cCCCCCChhhhhhHHhhcCceeeEEEeccccC
Q psy3863 25 TYCIVPFTR-GRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65 (285)
Q Consensus 25 syCiip~~r-G~~~Sr~~~~IV~e~~~~g~kv~i~TyGC~~N 65 (285)
.||++|... |.+.|.-++++++-+++.|.++.+..+|-.+-
T Consensus 5 e~sv~Plg~~~~svs~~Va~~i~~i~~sgl~y~~~pm~T~iE 46 (99)
T 1lxn_A 5 ELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLE 46 (99)
T ss_dssp EEEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEE
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHcCCCeEeCCCeeEEE
Confidence 589999975 46788888888888888888888888887654
No 43
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=27.83 E-value=1.8e+02 Score=21.20 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=48.8
Q ss_pred cchhHHHHHHHhhCCeeec--CC-----------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 66 VNDTEVVWSILKSSGYSKV--NH-----------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 66 ~~dsell~~lL~~~G~~~v--~~-----------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
....+.+..+|+..||... .+ ....|+||++.-.-. .. -...+++++.. .+...|
T Consensus 13 ~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~---g~~~~~~l~~~--------~~~~~i 80 (143)
T 3jte_A 13 STILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LS---GMDILREIKKI--------TPHMAV 80 (143)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SC---HHHHHHHHHHH--------CTTCEE
T ss_pred HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-Cc---HHHHHHHHHHh--------CCCCeE
Confidence 3344555566666665443 11 245799999875422 22 23444444421 134444
Q ss_pred -EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhcc
Q psy3863 133 -GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174 (285)
Q Consensus 133 -vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~ 174 (285)
++++-.......+.++ ..-.|++.-+-....+.+.|....+
T Consensus 81 i~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 81 IILTGHGDLDNAILAMK-EGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEEECTTCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH-hCcceeEeCCCCHHHHHHHHHHHHH
Confidence 4554332222233333 2234577777777777777765543
No 44
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.64 E-value=3.2e+02 Score=24.11 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCChhhhhhHHhhc-C--ceeeEEEeccccCcchhHHHHHH--------HhhC-CeeecCC--------------CCCCc
Q psy3863 38 SRPMQSILDEVRAL-S--DKVYFEVFGCQMNVNDTEVVWSI--------LKSS-GYSKVNH--------------PREAD 91 (285)
Q Consensus 38 Sr~~~~IV~e~~~~-g--~kv~i~TyGC~~N~~dsell~~l--------L~~~-G~~~v~~--------------~e~AD 91 (285)
+.-.++++..+... + .++-+.|-+-+.-.-=...+..+ |+.. ||+.+.- .+++|
T Consensus 103 ~~~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d 182 (262)
T 1xrs_B 103 ILSMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEAD 182 (262)
T ss_dssp CCCHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCC
Confidence 33445555554432 2 34555665533222223455556 8889 9998621 35688
Q ss_pred EEEEeccccccc--hHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHH
Q psy3863 92 VILVMTCAIREN--AEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169 (285)
Q Consensus 92 viiiNTCtVr~~--Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v 169 (285)
+|.+ |++.+.. .-..+.+.+..+++..- +++.+|+|.|=.. . .++.++. ++|.++++.. ...+++
T Consensus 183 ~Vgl-S~l~t~~~~~~~~~~~~i~~L~~~g~------~~~i~vivGG~~~--~-~~~a~~i-Gad~~~~da~--~~~~~a 249 (262)
T 1xrs_B 183 VLLV-SQTVTQKNVHIQNMTHLIELLEAEGL------RDRFVLLCGGPRI--N-NEIAKEL-GYDAGFGPGR--FADDVA 249 (262)
T ss_dssp EEEE-ECCCCTTSHHHHHHHHHHHHHHHTTC------GGGSEEEEECTTC--C-HHHHHTT-TCSEEECTTC--CHHHHH
T ss_pred EEEE-EeecCCccchHHHHHHHHHHHHhcCC------CCCCEEEEECCcC--C-HHHHHHc-CCeEEECCch--HHHHHH
Confidence 7665 6666641 34556666666653211 1246788877643 2 3444444 7999998865 455554
Q ss_pred H
Q psy3863 170 A 170 (285)
Q Consensus 170 ~ 170 (285)
+
T Consensus 250 ~ 250 (262)
T 1xrs_B 250 T 250 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=26.32 E-value=1.2e+02 Score=28.22 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=63.5
Q ss_pred cccCCCCCChhhhhhHHhh----c--Ccee---eEEEeccccCc-chhHHHHHHHhhCCeeec----CC-----------
Q psy3863 32 TRGRERSRPMQSILDEVRA----L--SDKV---YFEVFGCQMNV-NDTEVVWSILKSSGYSKV----NH----------- 86 (285)
Q Consensus 32 ~rG~~~Sr~~~~IV~e~~~----~--g~kv---~i~TyGC~~N~-~dsell~~lL~~~G~~~v----~~----------- 86 (285)
..|......++++++.=.+ . ..+| |...|| |+ .-++.+++-|.+.|.+.+ .+
T Consensus 239 ~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yG---nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~ 315 (410)
T 4dik_A 239 GHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYG---FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILK 315 (410)
T ss_dssp SSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSS---HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHH
T ss_pred CCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccC---hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHH
Confidence 3466665678888887433 1 1133 334454 33 346788888888996532 22
Q ss_pred -CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchh
Q psy3863 87 -PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAE 140 (285)
Q Consensus 87 -~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq 140 (285)
..++|-+||=|+|.-+..-..+...|..+...+- .++++++-|++..
T Consensus 316 ~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~-------~~K~~~~FGSyGW 363 (410)
T 4dik_A 316 DIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKAN-------YEKPVLVFGVHGW 363 (410)
T ss_dssp HSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCC-------CCCEEEEEEECCC
T ss_pred HHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhccc-------CCCEEEEEECCCC
Confidence 3468999999999988777777777776654321 2567888887653
No 46
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.26 E-value=3e+02 Score=23.43 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=34.5
Q ss_pred CCcEEEEecc--cccc-chHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECC
Q psy3863 89 EADVILVMTC--AIRE-NAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159 (285)
Q Consensus 89 ~ADviiiNTC--tVr~-~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~ 159 (285)
.+|.|++-|= ++.. +.-......|++++++. ++..|.|.|=+....-.++.+....+ +|+|+
T Consensus 138 ~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--------~~~~I~VdGGI~~~ti~~~~~aGAd~-~V~Gs 202 (227)
T 1tqx_A 138 LINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--------KNLNIQVDGGLNIETTEISASHGANI-IVAGT 202 (227)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--------TTCEEEEESSCCHHHHHHHHHHTCCE-EEESH
T ss_pred CcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--------cCCeEEEECCCCHHHHHHHHHcCCCE-EEEeH
Confidence 4688877762 2222 12234455566665332 25678888887655555556554444 46665
No 47
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.53 E-value=1.8e+02 Score=20.62 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=37.1
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCC-cEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFP-LKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~-~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e 167 (285)
..|+++++--.= .. .-...+++++.. .+. ..|++++........+.++.. -.|++.-+-....+.+
T Consensus 47 ~~dlvi~D~~l~-~~---~g~~~~~~l~~~--------~~~~~ii~~s~~~~~~~~~~~~~~g-a~~~l~Kp~~~~~l~~ 113 (126)
T 1dbw_A 47 RNGVLVTDLRMP-DM---SGVELLRNLGDL--------KINIPSIVITGHGDVPMAVEAMKAG-AVDFIEKPFEDTVIIE 113 (126)
T ss_dssp CSEEEEEECCST-TS---CHHHHHHHHHHT--------TCCCCEEEEECTTCHHHHHHHHHTT-CSEEEESSCCHHHHHH
T ss_pred CCCEEEEECCCC-CC---CHHHHHHHHHhc--------CCCCCEEEEECCCCHHHHHHHHHhC-HHHheeCCCCHHHHHH
Confidence 358888875331 11 123444555421 123 355666654433333333322 3467777777777777
Q ss_pred HHHhhc
Q psy3863 168 LLALTY 173 (285)
Q Consensus 168 ~v~~~~ 173 (285)
.++...
T Consensus 114 ~i~~~~ 119 (126)
T 1dbw_A 114 AIERAS 119 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 48
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.76 E-value=1.9e+02 Score=20.54 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=45.7
Q ss_pred chhHHHHHHHhhCCeeec--CC---------C-CCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EEE
Q psy3863 67 NDTEVVWSILKSSGYSKV--NH---------P-READVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KIG 133 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v--~~---------~-e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~Iv 133 (285)
...+.+...|...||... .+ . ...|++|++.-.-.... .+..+++++... +.. .|+
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~--------~~~~ii~ 84 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPD---GWQVARVAREID--------PNMPIVY 84 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSC---HHHHHHHHHHHC--------TTCCEEE
T ss_pred HHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCC---HHHHHHHHHhcC--------CCCCEEE
Confidence 344556666666665443 11 1 25699998864321022 233444444211 233 455
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhcc
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~ 174 (285)
+++-...... .+.+..-+++.-+-....+.+.|+....
T Consensus 85 ~s~~~~~~~~---~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 85 ISGHAALEWA---SNGVPDSIILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp EESSCCTTHH---HHSCTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCccHHHH---HhhcCCcceEeCCCCHHHHHHHHHHHHh
Confidence 5544322221 2222222577777777777777765543
No 49
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=24.66 E-value=1.9e+02 Score=21.09 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=47.7
Q ss_pred CcchhHHHHHHHhhCCeeec--CC----------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEE
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH----------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKI 132 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~----------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~I 132 (285)
+....+.+..+|+..||... .+ ....|++|++.---.....-.+. +.++..+. -..|
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~---~~l~~~~~--------~~ii 82 (140)
T 3h5i_A 14 SKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTA---LAIQQISE--------LPVV 82 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHH---HHHHHHCC--------CCEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHH---HHHHhCCC--------CCEE
Confidence 33445566666666666543 11 13569999986432212233344 44432111 2355
Q ss_pred EEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhc
Q psy3863 133 GVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173 (285)
Q Consensus 133 vVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~ 173 (285)
++++-.......+.++ ..-.+++.-+-....+.+.|+...
T Consensus 83 ~ls~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRS-VTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp EEESSSSCCCCGGGGG-SCEEEEEETTCCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHh-CCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5665443322222222 223456777777777777776543
No 50
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=24.58 E-value=71 Score=24.62 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=40.1
Q ss_pred chhHHHHHHHhhCCeeec-------CCCCCCcEEEEecccc-ccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccc
Q psy3863 67 NDTEVVWSILKSSGYSKV-------NHPREADVILVMTCAI-RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCM 138 (285)
Q Consensus 67 ~dsell~~lL~~~G~~~v-------~~~e~ADviiiNTCtV-r~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~ 138 (285)
...+.|++.|...|++.. .+..++|.+||-+.+. -......+...+..+..... . -.+++++|-||-
T Consensus 17 ~~A~~ia~~l~~~g~~v~~~~~~~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~--~---l~~~~~avfg~G 91 (147)
T 2hna_A 17 YVAEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKP--D---LSAVRFGAIGIG 91 (147)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCC--C---TTEEEEEEESCC
T ss_pred HHHHHHHHHHHHCCCceEEecCCCHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhcc--c---cCCCEEEEEecc
Confidence 446777777776675432 2345678999998887 55444445555555432100 0 124578888875
Q ss_pred hh
Q psy3863 139 AE 140 (285)
Q Consensus 139 aq 140 (285)
.+
T Consensus 92 ~~ 93 (147)
T 2hna_A 92 SR 93 (147)
T ss_dssp HH
T ss_pred cC
Confidence 44
No 51
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.64 E-value=2e+02 Score=20.45 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=49.1
Q ss_pred CcchhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEE
Q psy3863 65 NVNDTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIG 133 (285)
Q Consensus 65 N~~dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~Iv 133 (285)
+....+.+..+|+..||... .+ ....|++|++.-.-.. .-...+++++.... .+...|+
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~----~g~~~~~~l~~~~~------~~~~~ii 84 (132)
T 3lte_A 15 DQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKL----DGLDVIRSLRQNKV------ANQPKIL 84 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTB----CHHHHHHHHHTTTC------SSCCEEE
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCC----CHHHHHHHHHhcCc------cCCCeEE
Confidence 33445566666666666543 11 1345898888754222 22444555542110 1234555
Q ss_pred EEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhcc
Q psy3863 134 VLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174 (285)
Q Consensus 134 VtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~ 174 (285)
++.-.......+.++.. -.|++.-+-....+.+.|+....
T Consensus 85 ~~~~~~~~~~~~~~~~g-~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 85 VVSGLDKAKLQQAVTEG-ADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp EECCSCSHHHHHHHHHT-CCEEECSSCCHHHHHHHHHHHHC
T ss_pred EEeCCChHHHHHHHHhC-hHHHhhCCCCHHHHHHHHHHHcC
Confidence 55433332333333332 24566667777777776665443
No 52
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=23.44 E-value=3.5e+02 Score=23.08 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCcEEEEecccc--c-cchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEEC
Q psy3863 89 EADVILVMTCAI--R-ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158 (285)
Q Consensus 89 ~ADviiiNTCtV--r-~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG 158 (285)
.+|.|++-|=-- - ++.-....+.|++++++.. ++ +.+..|.|.|=+....-.++.+....+ +|+|
T Consensus 128 ~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~-~~---~~~~~I~VdGGI~~~~~~~~~~aGAd~-~V~G 195 (231)
T 3ctl_A 128 KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRE-RE---GLEYEIEVDGSCNQATYEKLMAAGADV-FIVG 195 (231)
T ss_dssp GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHH-HH---TCCCEEEEESCCSTTTHHHHHHHTCCE-EEEC
T ss_pred cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHh-cc---CCCceEEEECCcCHHHHHHHHHcCCCE-EEEc
Confidence 588888654221 1 1223344555555554322 11 135688899887766666666665544 6888
No 53
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=22.98 E-value=2.1e+02 Score=20.49 Aligned_cols=77 Identities=18% Similarity=0.047 Sum_probs=36.7
Q ss_pred CcEEEEecccccc-chHHHHHHHHHHHHHhhhhhccCCCCCc-EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHH
Q psy3863 90 ADVILVMTCAIRE-NAEGKVWDRLRFYRSMKQIHKKHRTFPL-KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167 (285)
Q Consensus 90 ADviiiNTCtVr~-~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e 167 (285)
.|++|++.-.--. ..+......+++++.. .+.. .|++++-.......+.++ ..-.+++.-+-....+.+
T Consensus 48 ~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--------~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~ 118 (140)
T 2qr3_A 48 PEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--------YRDLPVVLFTAYADIDLAVRGIK-EGASDFVVKPWDNQKLLE 118 (140)
T ss_dssp EEEEEEETTTTC-----CCHHHHHHHHHHH--------CTTCCEEEEEEGGGHHHHHHHHH-TTCCEEEEESCCHHHHHH
T ss_pred CCEEEEeCCcCCCCCCCccHHHHHHHHHhh--------CcCCCEEEEECCCCHHHHHHHHH-cCchheeeCCCCHHHHHH
Confidence 5899988643200 0011223444444421 1233 555665433222233332 222466777777777777
Q ss_pred HHHhhccC
Q psy3863 168 LLALTYSN 175 (285)
Q Consensus 168 ~v~~~~~~ 175 (285)
.|+....+
T Consensus 119 ~l~~~~~~ 126 (140)
T 2qr3_A 119 TLLNAASQ 126 (140)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77765544
No 54
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.70 E-value=2e+02 Score=20.04 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=34.6
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPR 167 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e 167 (285)
..|+++++.---.. .-++.+++++... +.. .|++++-.......+.++ ..-.|++.-+-....+..
T Consensus 44 ~~dlil~D~~l~~~----~g~~~~~~l~~~~--------~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~ 110 (121)
T 2pl1_A 44 IPDIAIVDLGLPDE----DGLSLIRRWRSND--------VSLPILVLTARESWQDKVEVLS-AGADDYVTKPFHIEEVMA 110 (121)
T ss_dssp CCSEEEECSCCSSS----CHHHHHHHHHHTT--------CCSCEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEecCCCCC----CHHHHHHHHHhcC--------CCCCEEEEecCCCHHHHHHHHH-cCccceEECCCCHHHHHH
Confidence 35888887543211 1234445554211 233 555665433322233333 223467777777766766
Q ss_pred HHHh
Q psy3863 168 LLAL 171 (285)
Q Consensus 168 ~v~~ 171 (285)
.++.
T Consensus 111 ~i~~ 114 (121)
T 2pl1_A 111 RMQA 114 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 55
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.61 E-value=2.1e+02 Score=20.35 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=44.4
Q ss_pred hhHHHHHHHhhCCeeec--CC---------CCCCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCc-EEEEE
Q psy3863 68 DTEVVWSILKSSGYSKV--NH---------PREADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPL-KIGVL 135 (285)
Q Consensus 68 dsell~~lL~~~G~~~v--~~---------~e~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~-~IvVt 135 (285)
..+.+..+|+..||+.+ .+ ....|++++..-- - +..-++.+++++.... .++. .|+++
T Consensus 14 ~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~-p---~~~g~~~~~~l~~~~~------~~~~pii~~s 83 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMM-P---VMDGFTVLKKLQEKEE------WKRIPVIVLT 83 (122)
T ss_dssp HHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCC-S---SSCHHHHHHHHHTSTT------TTTSCEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccC-C---CCcHHHHHHHHHhccc------ccCCCEEEEe
Confidence 34555555666665543 11 1245888886532 1 1223445555542211 1233 55566
Q ss_pred ccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHh
Q psy3863 136 GCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171 (285)
Q Consensus 136 GC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~ 171 (285)
+-.......+.++ ..-.|++.-+-+...+.+.+..
T Consensus 84 ~~~~~~~~~~~~~-~Ga~~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 84 AKGGEEDESLALS-LGARKVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp SCCSHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHH
T ss_pred cCCchHHHHHHHh-cChhhhccCCCCHHHHHHHHHH
Confidence 5433323333222 2234567777766666665544
No 56
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.33 E-value=2.1e+02 Score=20.22 Aligned_cols=70 Identities=23% Similarity=0.019 Sum_probs=35.3
Q ss_pred CCcEEEEeccccccchHHHHHHHHHHHHHhhhhhccCCCCCcEEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHH
Q psy3863 89 EADVILVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168 (285)
Q Consensus 89 ~ADviiiNTCtVr~~Ae~k~~~~I~~l~~~kr~~~~~~~p~~~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~ 168 (285)
..|++++..-- .+..-+..+++++.. .+-..|++++-.......+.++ ..-.|++.-+-....+.+.
T Consensus 46 ~~dlii~D~~~----p~~~g~~~~~~lr~~--------~~~~ii~~t~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~ 112 (120)
T 3f6p_A 46 QPDLILLDIML----PNKDGVEVCREVRKK--------YDMPIIMLTAKDSEIDKVIGLE-IGADDYVTKPFSTRELLAR 112 (120)
T ss_dssp CCSEEEEETTS----TTTHHHHHHHHHHTT--------CCSCEEEEEESSCHHHHHHHHH-TTCCEEEEESCCHHHHHHH
T ss_pred CCCEEEEeCCC----CCCCHHHHHHHHHhc--------CCCCEEEEECCCChHHHHHHHh-CCcceeEcCCCCHHHHHHH
Confidence 46888887532 122334555555421 1223566666544333333332 2234667777666666655
Q ss_pred HHh
Q psy3863 169 LAL 171 (285)
Q Consensus 169 v~~ 171 (285)
++.
T Consensus 113 i~~ 115 (120)
T 3f6p_A 113 VKA 115 (120)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 57
>4dfc_B Uvrabc system protein A; alpha/beta domains, DNA repair, ATP binding, DNA binding, NU excision repair, hydrolase-DNA binding protein complex; 2.80A {Escherichia coli}
Probab=22.25 E-value=68 Score=25.30 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=29.4
Q ss_pred cCCCCCChhhhhhHHhhc--CceeeEE-EeccccCcchhHHHHHHHhhCCeeec
Q psy3863 34 GRERSRPMQSILDEVRAL--SDKVYFE-VFGCQMNVNDTEVVWSILKSSGYSKV 84 (285)
Q Consensus 34 G~~~Sr~~~~IV~e~~~~--g~kv~i~-TyGC~~N~~dsell~~lL~~~G~~~v 84 (285)
|...+.++++|++.+... |.++.+. ..=.... ....-+.+.|...||.++
T Consensus 1 ~~i~~qt~~qivd~il~~~egtki~iLAPvv~~rK-g~~~~ll~~l~~~Gf~Rv 53 (126)
T 4dfc_B 1 GPHMASTVSQMVDNVLSQPEGKRLMLLAPIIKERK-GEHTKTLENLASQGYIRA 53 (126)
T ss_dssp ---CCCCHHHHHHHTTSSCTTCCEEEEEEEEEEEE-SCCHHHHHHHHHHTCCEE
T ss_pred CCCccCCHHHHHHHHHhCCCCCEEEEEeEEEeCCC-CcHHHHHHHHHhCCCeEE
Confidence 356788999999998773 6676653 2211112 233334455677899876
No 58
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.22 E-value=2.3e+02 Score=20.53 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=57.8
Q ss_pred CcchhHHHHHHHhh-CCeeec--CC---------C-CCCcEEEEeccccccch-HHHHHHHHHHHHHhhhhhccCCCCCc
Q psy3863 65 NVNDTEVVWSILKS-SGYSKV--NH---------P-READVILVMTCAIRENA-EGKVWDRLRFYRSMKQIHKKHRTFPL 130 (285)
Q Consensus 65 N~~dsell~~lL~~-~G~~~v--~~---------~-e~ADviiiNTCtVr~~A-e~k~~~~I~~l~~~kr~~~~~~~p~~ 130 (285)
+....+.+..+|+. .||+.+ .+ . ...|++|++.-- . +..-+..+++++.... .++.
T Consensus 13 ~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l----~~~~~g~~~~~~l~~~~~------~~~~ 82 (140)
T 3lua_A 13 FEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF----PVEKEGLEVLSAIRNNSR------TANT 82 (140)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS----SSHHHHHHHHHHHHHSGG------GTTC
T ss_pred CHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCC----CCCCcHHHHHHHHHhCcc------cCCC
Confidence 44556677777777 787654 11 2 457999987532 2 3344555666654211 1233
Q ss_pred -EEEEEccchhhhhHHHHhhCCCccEEECCCCcCCHHHHHHhhccCC
Q psy3863 131 -KIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ 176 (285)
Q Consensus 131 -~IvVtGC~aq~~~~~l~~~~~~Vd~VvG~~~~~~l~e~v~~~~~~~ 176 (285)
.|++++........+.++ ..-.+++.-+-....+.+.|+...++.
T Consensus 83 ~ii~ls~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALK-FKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CEEEEESCCCHHHHHHHHH-SCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CEEEEeCCCCHHHHHHHHH-cCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 566666544333333333 323467777888888888887765543
No 59
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=20.76 E-value=2e+02 Score=26.93 Aligned_cols=63 Identities=30% Similarity=0.512 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCeeecCCCCCCcEEEEeccccccchHHHHHHHHHHH-HHhhhhhccCCCCCcEEEEEccchhhhhH
Q psy3863 70 EVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY-RSMKQIHKKHRTFPLKIGVLGCMAERLKK 144 (285)
Q Consensus 70 ell~~lL~~~G~~~v~~~e~ADviiiNTCtVr~~Ae~k~~~~I~~l-~~~kr~~~~~~~p~~~IvVtGC~aq~~~~ 144 (285)
..-.++|+..|+.. ...++|--=||+=+.---+++-+.|++. ..+| .+.+|.|+||+...-+|
T Consensus 253 ~va~~ILqslglR~----~g~~~ISCPtCGRt~~dl~~~~~~ie~~l~~~~--------~~lkVAVMGCvVNGPGE 316 (366)
T 3noy_A 253 ETAYEILKSLGLRR----RGVEIVACPTCGRIEVDLPKVVKEVQEKLSGVK--------TPLKVAVMGCVVNAIGE 316 (366)
T ss_dssp HHHHHHHHHTTSCC----SSCEEEECCCCTTCCSCHHHHHHHHHHHTTTCC--------SCCEEEEESSSHHHHHH
T ss_pred HHHHHHHHhcCCCc----CCCEEEECCCCCCccccHHHHHHHHHHHHhCCC--------CCCEEEEEcccccCCch
Confidence 44456677777533 2457888889998887667777777643 2222 26899999999986655
No 60
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.56 E-value=40 Score=24.52 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=26.3
Q ss_pred ccChHHHHhhhhcccCCcchHhHhHHHhccccccccccc
Q psy3863 221 RKLGQQMVDGRSMSMDDGGGASMSSRQCGRFQSTLIDGH 259 (285)
Q Consensus 221 S~~~~~iv~~~~~~~~d~g~~~~ll~~~~~~~~~~~~~~ 259 (285)
+.++.++++||..+|.| +-+||.....+ ||+|+
T Consensus 45 ~~~~~~v~~rV~~Lf~~---hpdLi~gFn~F---LP~~~ 77 (80)
T 2cr7_A 45 SIDTPGVIRRVSQLFHE---HPDLIVGFNAF---LPSGP 77 (80)
T ss_dssp SSCHHHHHHHHHHHGGG---CHHHHHHHHHH---SSCSS
T ss_pred CCCHHHHHHHHHHHHcC---CHHHHHHHHHH---CcCCC
Confidence 56889999999999985 57888887666 67764
Done!