Your job contains 1 sequence.
>psy3863
MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF
GCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFYRSMKQ
IHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAIN
VLLSLDETYADITPKAVSTDGRRSIYVDGRWSIYVDGRWRRKLGQQMVDGRSMSMDDGGG
ASMSSRQCGRFQSTLIDGHRLCVTQLYLTNQDYPIPRKIRNSSLF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3863
(285 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q675N4 - symbol:CDK5RAP1 "CDK5 regulatory subun... 465 3.9e-44 1
UNIPROTKB|Q96SZ6 - symbol:CDK5RAP1 "CDK5 regulatory subun... 465 3.9e-44 1
UNIPROTKB|F1NZV3 - symbol:CDK5RAP1 "Uncharacterized prote... 462 8.1e-44 1
UNIPROTKB|Q08DN3 - symbol:CDK5RAP1 "CDK5 regulatory subun... 458 2.2e-43 1
RGD|708387 - symbol:Cdk5rap1 "CDK5 regulatory subunit ass... 457 2.8e-43 1
MGI|MGI:1914221 - symbol:Cdk5rap1 "CDK5 regulatory subuni... 457 2.8e-43 1
UNIPROTKB|E2QYD7 - symbol:CDK5RAP1 "Uncharacterized prote... 456 3.5e-43 1
UNIPROTKB|F1S500 - symbol:CDK5RAP1 "Uncharacterized prote... 456 3.5e-43 1
FB|FBgn0037816 - symbol:CG6345 species:7227 "Drosophila m... 455 4.5e-43 1
ZFIN|ZDB-GENE-070424-90 - symbol:zgc:162738 "zgc:162738" ... 446 4.0e-42 1
DICTYBASE|DDB_G0287079 - symbol:DDB_G0287079 "CDK5 regula... 392 4.8e-36 1
TAIR|locus:2115410 - symbol:AT4G36390 species:3702 "Arabi... 393 5.4e-36 1
WB|WBGene00017776 - symbol:F25B5.5 species:6239 "Caenorha... 352 7.6e-32 1
UNIPROTKB|Q09316 - symbol:F25B5.5 "CDK5RAP1-like protein"... 352 7.6e-32 1
UNIPROTKB|E2RIW1 - symbol:CDK5RAP1 "Uncharacterized prote... 337 5.4e-30 1
UNIPROTKB|Q81WR0 - symbol:miaB "(Dimethylallyl)adenosine ... 226 5.0e-18 1
TIGR_CMR|BA_3908 - symbol:BA_3908 "conserved hypothetical... 226 5.0e-18 1
TIGR_CMR|SPO_A0002 - symbol:SPO_A0002 "tRNA-i(6)A37 thiot... 221 1.2e-17 1
UNIPROTKB|Q74B44 - symbol:miaB "(Dimethylallyl)adenosine ... 220 1.6e-17 1
TIGR_CMR|GSU_2198 - symbol:GSU_2198 "tRNA-i(6)A37 modific... 220 1.6e-17 1
UNIPROTKB|H0Y721 - symbol:CDK5RAP1 "CDK5 regulatory subun... 212 2.5e-17 1
UNIPROTKB|O31778 - symbol:miaB "(Dimethylallyl)adenosine ... 219 2.9e-17 1
TIGR_CMR|CPS_3572 - symbol:CPS_3572 "tRNA-i(6)A37 thiotra... 202 1.8e-15 1
TIGR_CMR|CHY_1398 - symbol:CHY_1398 "tRNA-i(6)A37 thiotra... 194 4.3e-14 1
TIGR_CMR|ECH_0837 - symbol:ECH_0837 "tRNA-i(6)A37 modific... 191 1.9e-13 1
TIGR_CMR|APH_0880 - symbol:APH_0880 "tRNA-i(6)A37 thiotra... 187 8.3e-13 1
TIGR_CMR|SO_1181 - symbol:SO_1181 "tRNA-i(6)A37 modificat... 187 9.7e-13 1
UNIPROTKB|Q608N1 - symbol:miaB "(Dimethylallyl)adenosine ... 185 1.8e-12 1
TIGR_CMR|NSE_0832 - symbol:NSE_0832 "tRNA-i(6)A37 modific... 185 1.9e-12 1
UNIPROTKB|Q83DX3 - symbol:miaB "(Dimethylallyl)adenosine ... 178 1.5e-11 1
TIGR_CMR|CBU_0569 - symbol:CBU_0569 "conserved hypothetic... 178 1.5e-11 1
UNIPROTKB|Q9KTE0 - symbol:miaB "(Dimethylallyl)adenosine ... 178 1.8e-11 1
TIGR_CMR|VC_0962 - symbol:VC_0962 "conserved hypothetical... 178 1.8e-11 1
UNIPROTKB|P0AEI1 - symbol:miaB "isopentenyl-adenosine A37... 168 3.3e-10 1
TIGR_CMR|DET_1385 - symbol:DET_1385 "tRNA-i(6)A37 thiotra... 155 9.6e-09 1
TIGR_CMR|CJE_0508 - symbol:CJE_0508 "tRNA-i(6)A37 thiotra... 140 6.0e-07 1
TIGR_CMR|CHY_0419 - symbol:CHY_0419 "MiaB-like tRNA modif... 134 3.0e-06 1
TIGR_CMR|CHY_1164 - symbol:CHY_1164 "MiaB-like tRNA modif... 133 3.9e-06 1
TIGR_CMR|SPO_0277 - symbol:SPO_0277 "MiaB-like tRNA modif... 131 6.2e-06 1
UNIPROTKB|Q747R0 - symbol:rimO "Ribosomal protein S12 met... 130 9.0e-06 1
TIGR_CMR|GSU_3205 - symbol:GSU_3205 "MiaB-like tRNA modif... 130 9.0e-06 1
TIGR_CMR|CJE_1086 - symbol:CJE_1086 "MiaB-like tRNA modif... 128 1.4e-05 1
TIGR_CMR|CJE_1627 - symbol:CJE_1627 "MiaB-like tRNA modif... 126 2.5e-05 1
UNIPROTKB|P54462 - symbol:mtaB "Threonylcarbamoyladenosin... 120 0.00013 1
UNIPROTKB|Q81LS6 - symbol:BAS4209 "Uncharacterized protei... 119 0.00016 1
TIGR_CMR|BA_4535 - symbol:BA_4535 "conserved hypothetical... 119 0.00016 1
UNIPROTKB|Q74A23 - symbol:mtaB "tRNA (2-methylthio-N6-thr... 116 0.00034 1
TIGR_CMR|GSU_2568 - symbol:GSU_2568 "MiaB-like tRNA modif... 116 0.00034 1
>UNIPROTKB|Q675N4 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1 transcript variant 4" species:9606 "Homo sapiens" [GO:0009451
"RNA modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AL355392
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 UniGene:Hs.435952 HGNC:HGNC:15880
HOVERGEN:HBG050975 ChiTaRS:CDK5RAP1 EMBL:AY462284 IPI:IPI01014266
SMR:Q675N4 STRING:Q675N4 Ensembl:ENST00000544843 Uniprot:Q675N4
Length = 426
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 87/159 (54%), Positives = 119/159 (74%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 244
Score = 215 (80.7 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++ EV
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVT 298
Query: 61 GCQMNVN 67
NVN
Sbjct: 299 LLGQNVN 305
>UNIPROTKB|Q96SZ6 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0007420 "brain development" evidence=NAS]
[GO:0045664 "regulation of neuron differentiation" evidence=NAS]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:CH471077 GO:GO:0045664 GO:GO:0019901 GO:GO:0007420
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0045736 EMBL:AL355392 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AF152097 EMBL:AF161516 EMBL:AK023992 EMBL:AK027449
EMBL:AK292075 EMBL:BC001215 EMBL:BC050706 IPI:IPI00306312
IPI:IPI00328276 IPI:IPI00328277 IPI:IPI00328278 RefSeq:NP_057166.3
RefSeq:NP_057492.2 UniGene:Hs.435952 ProteinModelPortal:Q96SZ6
SMR:Q96SZ6 IntAct:Q96SZ6 STRING:Q96SZ6 PhosphoSite:Q96SZ6
DMDM:32129446 PaxDb:Q96SZ6 PRIDE:Q96SZ6 DNASU:51654
Ensembl:ENST00000339269 Ensembl:ENST00000346416
Ensembl:ENST00000357886 Ensembl:ENST00000452723 GeneID:51654
KEGG:hsa:51654 UCSC:uc002wyy.3 UCSC:uc002wyz.3 UCSC:uc010gek.3
UCSC:uc010gem.3 CTD:51654 GeneCards:GC20M031946 HGNC:HGNC:15880
MIM:608200 neXtProt:NX_Q96SZ6 PharmGKB:PA26313 HOVERGEN:HBG050975
InParanoid:Q96SZ6 PhylomeDB:Q96SZ6 ChiTaRS:CDK5RAP1
GenomeRNAi:51654 NextBio:55620 ArrayExpress:Q96SZ6 Bgee:Q96SZ6
CleanEx:HS_CDK5RAP1 Genevestigator:Q96SZ6
GermOnline:ENSG00000101391 Uniprot:Q96SZ6
Length = 601
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 87/159 (54%), Positives = 119/159 (74%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 87 PPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 147 IREKAEQTIWNRLHQLKALKTRRPRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 205
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 206 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 244
Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 39/56 (69%), Positives = 49/56 (87%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVY 56
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EV+ LS++V+
Sbjct: 239 MPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVF 294
>UNIPROTKB|F1NZV3 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY EMBL:AADN02019062 IPI:IPI00570955
ProteinModelPortal:F1NZV3 Ensembl:ENSGALT00000010897 Uniprot:F1NZV3
Length = 522
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 84/150 (56%), Positives = 116/150 (77%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KVY E +GCQMNVNDTE+ W+IL+ SGY++ EADVIL++TC++R+ AE +W+RL+
Sbjct: 36 KVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWNRLQ 95
Query: 114 FYRSMKQIHKKHRT-FPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
+++K ++H+ PL+IG+LGCMAERLK+ +L +E+ +D+VAGPD+Y+DLPRLLA+
Sbjct: 96 HLKALKA--RRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAMA 153
Query: 173 YSNQTAINVLLSLDETYADITPKAVSTDGR 202
S Q A NVLLSLDETYADI P S G+
Sbjct: 154 ESGQQAANVLLSLDETYADILPVQTSAGGK 183
Score = 207 (77.9 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + +AFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ EV
Sbjct: 174 LPVQTSAGGKTAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILQEVKMLSDQGVKEVT 233
Query: 61 GCQMNVN 67
NVN
Sbjct: 234 LLGQNVN 240
>UNIPROTKB|Q08DN3 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1" species:9913 "Bos taurus" [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
eggNOG:COG0621 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 HOVERGEN:HBG050975
OrthoDB:EOG4SQWWK EMBL:DAAA02036431 EMBL:BC123652 IPI:IPI00694092
RefSeq:NP_001069114.1 UniGene:Bt.3262 STRING:Q08DN3
Ensembl:ENSBTAT00000024670 GeneID:514086 KEGG:bta:514086
InParanoid:Q08DN3 NextBio:20871170 Uniprot:Q08DN3
Length = 589
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 86/159 (54%), Positives = 118/159 (74%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ +VY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGRQRRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL +S+K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 149 IREKAEQTIWNRLHQLKSLKSKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 207
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLP+LLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 208 DAYRDLPQLLAVAESGQQAANVLLSLDETYADVMPVQTS 246
Score = 218 (81.8 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN 67
NVN
Sbjct: 301 LLGQNVN 307
>RGD|708387 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein 1"
species:10116 "Rattus norvegicus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0007420 "brain development"
evidence=TAS] [GO:0008283 "cell proliferation" evidence=NAS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0019887
"protein kinase regulator activity" evidence=TAS] [GO:0032403
"protein complex binding" evidence=IDA] [GO:0045664 "regulation of
neuron differentiation" evidence=TAS] [GO:0045736 "negative
regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=ISO;ISS] [GO:0045859 "regulation of protein
kinase activity" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 RGD:708387 GO:GO:0005737
GO:GO:0045664 GO:GO:0007420 GO:GO:0032403 GO:GO:0046872
GO:GO:0008283 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0019887 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 OrthoDB:EOG4SQWWK EMBL:AF177477 EMBL:BC066666
IPI:IPI00203631 RefSeq:NP_663773.1 UniGene:Rn.203271
ProteinModelPortal:Q9JLH6 IntAct:Q9JLH6 STRING:Q9JLH6
Ensembl:ENSRNOT00000021418 GeneID:252827 KEGG:rno:252827
InParanoid:Q9JLH6 NextBio:623881 Genevestigator:Q9JLH6
Uniprot:Q9JLH6
Length = 586
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 88/153 (57%), Positives = 114/153 (74%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 90 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 149
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 150 QTIWNRLHQLKVLKAKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 208
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 209 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 241
Score = 226 (84.6 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 50/87 (57%), Positives = 62/87 (71%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 236 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 295
Query: 61 GCQMNVN----DTEVVWSILKSSGYSK 83
NVN ++EV +S S+ S+
Sbjct: 296 LLGQNVNSFRDNSEVQFSSTGSANLSR 322
>MGI|MGI:1914221 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein
1" species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0043412 "macromolecule
modification" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 MGI:MGI:1914221
GO:GO:0005737 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 EMBL:AK010097 EMBL:AK088517 EMBL:BC025132
IPI:IPI00109397 RefSeq:NP_080152.1 UniGene:Mm.289427
ProteinModelPortal:Q8BTW8 SMR:Q8BTW8 STRING:Q8BTW8
PhosphoSite:Q8BTW8 PaxDb:Q8BTW8 PRIDE:Q8BTW8
Ensembl:ENSMUST00000028990 Ensembl:ENSMUST00000109731 GeneID:66971
KEGG:mmu:66971 InParanoid:Q8BTW8 OrthoDB:EOG4SQWWK NextBio:323171
Bgee:Q8BTW8 CleanEx:MM_CDK5RAP1 Genevestigator:Q8BTW8
GermOnline:ENSMUSG00000027487 Uniprot:Q8BTW8
Length = 588
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 88/153 (57%), Positives = 114/153 (74%)
Query: 46 DEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAE 105
DE+ KVY E +GCQMNVNDTE+ WSIL+ SGY + ++ +EADVIL++TC+IRE AE
Sbjct: 92 DELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAE 151
Query: 106 GKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDL 165
+W+RL + +K + R PL+IG+LGCMAERLK +L +E+ +DL+AGPD+Y+DL
Sbjct: 152 QTIWNRLHQLKVLKTKRPRSRV-PLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL 210
Query: 166 PRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PRLLA+ S Q A NVLLSLDETYADI P S
Sbjct: 211 PRLLAVVESGQQAANVLLSLDETYADIMPVQTS 243
Score = 222 (83.2 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 45/67 (67%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SILDEVR LS++ EV
Sbjct: 238 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVT 297
Query: 61 GCQMNVN 67
NVN
Sbjct: 298 LLGQNVN 304
>UNIPROTKB|E2QYD7 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AAEX03013894 ProteinModelPortal:E2QYD7
Ensembl:ENSCAFT00000039522 Uniprot:E2QYD7
Length = 583
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 85/159 (53%), Positives = 118/159 (74%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P ++E+ KVY E +GCQMNVNDTE+ WS+L+ SGY + + +EADVIL++TC+
Sbjct: 83 PPYVTVEELLGRQRKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCS 142
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRE AE +W+RL+ +++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGP
Sbjct: 143 IREKAEQTIWNRLQQLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGP 201
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 202 DAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTS 240
Score = 218 (81.8 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 235 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 294
Query: 61 GCQMNVN 67
NVN
Sbjct: 295 LLGQNVN 301
>UNIPROTKB|F1S500 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 EMBL:CU074412
RefSeq:XP_001928891.1 UniGene:Ssc.4299 ProteinModelPortal:F1S500
Ensembl:ENSSSCT00000007949 GeneID:100153041 KEGG:ssc:100153041
Uniprot:F1S500
Length = 589
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 87/160 (54%), Positives = 120/160 (75%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P +DE+ KVY E +GCQMNVNDTE+ WSIL+ +GY + ++ +EADVIL++TC+
Sbjct: 89 PPYLTVDELLGKQRKVYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCS 148
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRT-FPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
IRE AE +W+RL +++K K+ R+ PL+IG+LGCMAERLK+ +L +E+ +D++AG
Sbjct: 149 IREKAEQTIWNRLHQLKALKS--KRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAG 206
Query: 159 PDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
PD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P S
Sbjct: 207 PDAYRDLPRLLAVAESGQQAANVLLSLDETYADVLPVQTS 246
Score = 217 (81.4 bits), Expect = 6.6e-17, P = 6.6e-17
Identities = 49/87 (56%), Positives = 62/87 (71%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+ V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 241 LPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 300
Query: 61 GCQMNVN---DT-EVVWSILKSSGYSK 83
NVN DT EV ++ S+ S+
Sbjct: 301 LLGQNVNSFRDTSEVQFNNAVSTNLSR 327
>FB|FBgn0037816 [details] [associations]
symbol:CG6345 species:7227 "Drosophila melanogaster"
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE014297 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 OMA:CGRTDGN EMBL:AY071094 RefSeq:NP_650002.1
UniGene:Dm.31302 ProteinModelPortal:Q9VGZ1 SMR:Q9VGZ1 STRING:Q9VGZ1
PRIDE:Q9VGZ1 EnsemblMetazoa:FBtr0082258 GeneID:41271
KEGG:dme:Dmel_CG6345 UCSC:CG6345-RA FlyBase:FBgn0037816
InParanoid:Q9VGZ1 OrthoDB:EOG4KPRS9 PhylomeDB:Q9VGZ1
GenomeRNAi:41271 NextBio:823020 Bgee:Q9VGZ1 GermOnline:CG6345
Uniprot:Q9VGZ1
Length = 583
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 88/149 (59%), Positives = 120/149 (80%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV+FEV+GCQMN NDTEVV+SILK +GY + P EADVI+++TCA+R+ AE ++ +RL+
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLK 152
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT- 172
R+MK + R PL++ +LGCMAERLK+ LLE+EQ +D++AGPDSYKDLPRLLA++
Sbjct: 153 HLRAMKN-KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 173 -YSNQTAINVLLSLDETYADITPKAVSTD 200
Y N +AINVLLSLDETYAD+ P ++++
Sbjct: 212 HYGN-SAINVLLSLDETYADVMPVRLNSE 239
Score = 230 (86.0 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M VRLN +S +AFVSIMRGCDNMCTYCIVPFTRGRERSRP+ SI+ EV+AL+++ EV
Sbjct: 232 MPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVT 291
Query: 61 GCQMNVN 67
NVN
Sbjct: 292 LLGQNVN 298
>ZFIN|ZDB-GENE-070424-90 [details] [associations]
symbol:zgc:162738 "zgc:162738" species:7955 "Danio
rerio" [GO:0043412 "macromolecule modification" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729
ZFIN:ZDB-GENE-070424-90 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:CR385028 EMBL:CT573268 IPI:IPI00877502
ProteinModelPortal:F1QMW8 Ensembl:ENSDART00000104111 Bgee:F1QMW8
Uniprot:F1QMW8
Length = 577
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 85/156 (54%), Positives = 118/156 (75%)
Query: 52 SDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
S KVYFE +GCQMN NDTE+ WSIL+ +GYS+ ++ADV+L++TC+IRE AE +W+R
Sbjct: 89 SRKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNR 148
Query: 112 LRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLAL 171
L+ + K+ +KH+ L IGVLGCMAERLK LL++E+ +D++AGPD+Y+DLPRLL+L
Sbjct: 149 LKHLTASKKRIQKHKR-SLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSL 207
Query: 172 TYSNQTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
+ Q A NVLLSL+ETYAD+ P + +G S +V
Sbjct: 208 AHGGQRASNVLLSLEETYADVIPVHQTLEGH-SAFV 242
Score = 214 (80.4 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 42/57 (73%), Positives = 47/57 (82%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAFVSIMRGCDNMC+YCIVPFTRGRERSRPM SI++EVR LSD+ E+ NVN
Sbjct: 239 SAFVSIMRGCDNMCSYCIVPFTRGRERSRPMSSIVEEVRMLSDQGVKEITLLGQNVN 295
>DICTYBASE|DDB_G0287079 [details] [associations]
symbol:DDB_G0287079 "CDK5 regulatory
subunit-associated protein 1" species:44689 "Dictyostelium
discoideum" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 dictyBase:DDB_G0287079 GenomeReviews:CM000153_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AAFI02000096
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 RefSeq:XP_637416.1 ProteinModelPortal:Q54KV4
STRING:Q54KV4 EnsemblProtists:DDB0266584 GeneID:8625948
KEGG:ddi:DDB_G0287079 OMA:TSNLQEX ProtClustDB:CLSZ2430042
Uniprot:Q54KV4
Length = 607
Score = 392 (143.0 bits), Expect = 4.8e-36, P = 4.8e-36
Identities = 87/170 (51%), Positives = 113/170 (66%)
Query: 40 PMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA 99
P S L + KV+ E +GCQMNV+D EV+ SI+KSSGY+ N AD++ + TC+
Sbjct: 94 PYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCS 153
Query: 100 IRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGP 159
IRENAE K+W RL R++++ K+ R L +GVLGCMAERLK+ LLE + +D+V GP
Sbjct: 154 IRENAEAKIWLRLTELRAIRR--KQGRP-NLIVGVLGCMAERLKEKLLESDMKVDIVVGP 210
Query: 160 DSYKDLPRLLALTYSN--QTAINVLLSLDETYADITPKAVSTDGRRSIYV 207
D+Y+ LP LLA QTAINV+LS DETYADI P S D + S YV
Sbjct: 211 DAYRSLPSLLATLEDGEQQTAINVILSADETYADIKPVRKS-DNQVSAYV 259
Score = 216 (81.1 bits), Expect = 9.0e-17, P = 9.0e-17
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR +++ VSA+VSIMRGC+NMC+YCIVPFTRGRERSRP+ SIL EV+ LSD+ + E+
Sbjct: 248 VRKSDNQVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLL 307
Query: 63 QMNVN 67
NVN
Sbjct: 308 GQNVN 312
>TAIR|locus:2115410 [details] [associations]
symbol:AT4G36390 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0009691 "cytokinin
biosynthetic process" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0000079
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AL161589 EMBL:Z99708
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:BT002022 EMBL:BT008395 IPI:IPI00522311 PIR:E85429
RefSeq:NP_195357.2 UniGene:At.27708 ProteinModelPortal:Q8H0V1
SMR:Q8H0V1 STRING:Q8H0V1 PaxDb:Q8H0V1 PRIDE:Q8H0V1
EnsemblPlants:AT4G36390.1 GeneID:829791 KEGG:ath:AT4G36390
TAIR:At4g36390 HOGENOM:HOG000224767 InParanoid:Q8H0V1 OMA:CGRTDGN
PhylomeDB:Q8H0V1 ProtClustDB:CLSN2680299 Genevestigator:Q8H0V1
GermOnline:AT4G36390 TIGRFAMs:TIGR01574 Uniprot:Q8H0V1
Length = 640
Score = 393 (143.4 bits), Expect = 5.4e-36, P = 5.4e-36
Identities = 81/165 (49%), Positives = 110/165 (66%)
Query: 42 QSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKV-NHPREADVILVMTCAI 100
+S LD A ++Y E +GCQMN+ND E+V +I+K+SGY +V P A+VI V TCAI
Sbjct: 118 ESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAI 177
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTF-------PLKIGVLGCMAERLKKSLLEKEQAL 153
RENAE +VW RL ++ +K+ K + P K+ VLGCMAERLK +L+ ++ +
Sbjct: 178 RENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMV 237
Query: 154 DLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKAVS 198
D+V GPD+Y+DLPRLL Q IN LLSL+ETYADI+P +S
Sbjct: 238 DVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS 282
Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
VR++E+S++AFVS+MRGC+NMC +CIVPFTRGRERSRP++SI+ EV L + EV
Sbjct: 279 VRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLL 338
Query: 63 QMNVN 67
NVN
Sbjct: 339 GQNVN 343
>WB|WBGene00017776 [details] [associations]
symbol:F25B5.5 species:6239 "Caenorhabditis elegans"
[GO:0016740 "transferase activity" evidence=IEA] [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0005575 "cellular_component" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 352 (129.0 bits), Expect = 7.6e-32, P = 7.6e-32
Identities = 70/145 (48%), Positives = 99/145 (68%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + + AD++L+MTC+IR+ AE KVW++L+
Sbjct: 81 VCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKL 140
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS ++K +GVLGCMAER++ LLEK +++VAGPDSY+DLPRL+A+
Sbjct: 141 IRS-NSVNKGQI-----VGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAG 194
Query: 175 NQTAINVLLSLDETYADITPKAVST 199
INV LSLDETYAD+ P V +
Sbjct: 195 GSNGINVQLSLDETYADVQPIRVDS 219
Score = 219 (82.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 52/123 (42%), Positives = 74/123 (60%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP++SI++EV+ L D+ Y +V
Sbjct: 215 IRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTLL 274
Query: 63 QMNVND----TEVVWSILKSS-------GYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
NVN T + +S+ S+ G+ V P+ L T + + A+ R
Sbjct: 275 GQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGG--LTFTTLLEKVADAAPDIR 332
Query: 112 LRF 114
RF
Sbjct: 333 FRF 335
>UNIPROTKB|Q09316 [details] [associations]
symbol:F25B5.5 "CDK5RAP1-like protein" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 352 (129.0 bits), Expect = 7.6e-32, P = 7.6e-32
Identities = 70/145 (48%), Positives = 99/145 (68%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V + +GCQMNV+D E+V SI+ G+ + + AD++L+MTC+IR+ AE KVW++L+
Sbjct: 81 VCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKL 140
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
RS ++K +GVLGCMAER++ LLEK +++VAGPDSY+DLPRL+A+
Sbjct: 141 IRS-NSVNKGQI-----VGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAG 194
Query: 175 NQTAINVLLSLDETYADITPKAVST 199
INV LSLDETYAD+ P V +
Sbjct: 195 GSNGINVQLSLDETYADVQPIRVDS 219
Score = 219 (82.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 52/123 (42%), Positives = 74/123 (60%)
Query: 3 VRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGC 62
+R++ S +AF+SIMRGCDNMCTYC+VPFTRGRERSRP++SI++EV+ L D+ Y +V
Sbjct: 215 IRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTLL 274
Query: 63 QMNVND----TEVVWSILKSS-------GYSKVNHPREADVILVMTCAIRENAEGKVWDR 111
NVN T + +S+ S+ G+ V P+ L T + + A+ R
Sbjct: 275 GQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGG--LTFTTLLEKVADAAPDIR 332
Query: 112 LRF 114
RF
Sbjct: 333 FRF 335
>UNIPROTKB|E2RIW1 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0016740
GO:GO:0051539 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 Pfam:PF01938 EMBL:AAEX03013894
Ensembl:ENSCAFT00000011867 Uniprot:E2RIW1
Length = 583
Score = 337 (123.7 bits), Expect = 5.4e-30, P = 5.4e-30
Identities = 67/145 (46%), Positives = 98/145 (67%)
Query: 55 VYFEVF-GCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
+Y ++ C +D + + + N +EADVIL++TC+IRE AE +W+RL+
Sbjct: 99 IYINIYICCSPQFSDINIDKKVSQGRFKKTPNVCKEADVILLVTCSIREKAEQTIWNRLQ 158
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
+++K + R PL+IG+LGCMAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+
Sbjct: 159 QLKALKTKRLRSRV-PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 217
Query: 174 SNQTAINVLLSLDETYADITPKAVS 198
S Q A NVLLSLDETYAD+ P S
Sbjct: 218 SGQQAANVLLSLDETYADVMPVQTS 242
Score = 218 (81.8 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
M V+ + + SAFVSIMRGCDNMC+YCIVPFTRGRERSRP+ SIL+EVR LS++ EV
Sbjct: 237 MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVT 296
Query: 61 GCQMNVN 67
NVN
Sbjct: 297 LLGQNVN 303
>UNIPROTKB|Q81WR0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 226 (84.6 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 52/131 (39%), Positives = 75/131 (57%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+
Sbjct: 205 KVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLG 264
Query: 64 MNVN 67
NVN
Sbjct: 265 QNVN 268
>TIGR_CMR|BA_3908 [details] [associations]
symbol:BA_3908 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 226 (84.6 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 52/131 (39%), Positives = 75/131 (57%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K Y +GCQMN +DTEV+ I + GY +ADV+L+ TCAIRENAE KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELG 126
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPRLLA- 170
+S+K+ R L IGV GCM+ E + +++K Q +D+V G + LP +L
Sbjct: 127 HLKSLKR-----RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
Query: 171 LTYSNQTAINV 181
+S +T + V
Sbjct: 182 AMFSKETVVEV 192
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + A+V+IM GCD CTYCIVP+TRG+ERSR + I+ E+R L+ Y E+
Sbjct: 205 KVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEITLLG 264
Query: 64 MNVN 67
NVN
Sbjct: 265 QNVN 268
>TIGR_CMR|SPO_A0002 [details] [associations]
symbol:SPO_A0002 "tRNA-i(6)A37 thiotransferase enzyme
MiaB" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:CP000032 GenomeReviews:CP000032_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:YP_164834.1 ProteinModelPortal:Q5LLM0
GeneID:3196777 KEGG:sil:SPOA0002 PATRIC:23381304 Uniprot:Q5LLM0
Length = 439
Score = 221 (82.9 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 52/150 (34%), Positives = 83/150 (55%)
Query: 51 LSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKV 108
+SD K++ + +GCQMNV D+E + L GY + +AD+IL+ TC IRE A KV
Sbjct: 1 MSDPKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKV 60
Query: 109 WDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL 168
+ L ++ +K LKIGV GC+A+ + ++ ++ +DLV GP SY LP L
Sbjct: 61 YSELGRFKGLKAAKPD-----LKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEL 115
Query: 169 LALTYSNQTAINVLLSLDETYADIT--PKA 196
A T + + A++ ++ + + PKA
Sbjct: 116 EAKTRAGEKALDTDFPEEDKFEKLKGRPKA 145
Score = 130 (50.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AF+++ GCD C +C+VP+TRG E SRP IL E L ++ E+ NVN
Sbjct: 150 TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREANELVERGVREITLLGQNVN 206
>UNIPROTKB|Q74B44 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 220 (82.5 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 52/148 (35%), Positives = 81/148 (54%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL-R 113
+Y E FGCQMNVND+E + ++LK GY + P AD++++ TC++R AE KV+ L R
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F K + + + F L +G GC+A++ + LL+K LDLV G + LP ++
Sbjct: 67 F----KGVRSRKKGFLLGVG--GCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ V +ET D+ P+ G
Sbjct: 121 RGERRAEVGFIDNETRLDLFPETGGEGG 148
Score = 152 (58.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V+ FV++M+GCDN C+YCIVP+ RGRE SR I+DEVR + EV NV
Sbjct: 146 EGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDIIDEVRKSVAEGVKEVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>TIGR_CMR|GSU_2198 [details] [associations]
symbol:GSU_2198 "tRNA-i(6)A37 modification enzyme MiaB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 220 (82.5 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 52/148 (35%), Positives = 81/148 (54%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL-R 113
+Y E FGCQMNVND+E + ++LK GY + P AD++++ TC++R AE KV+ L R
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
F K + + + F L +G GC+A++ + LL+K LDLV G + LP ++
Sbjct: 67 F----KGVRSRKKGFLLGVG--GCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAE 120
Query: 174 SNQTAINVLLSLDETYADITPKAVSTDG 201
+ V +ET D+ P+ G
Sbjct: 121 RGERRAEVGFIDNETRLDLFPETGGEGG 148
Score = 152 (58.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V+ FV++M+GCDN C+YCIVP+ RGRE SR I+DEVR + EV NV
Sbjct: 146 EGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDIIDEVRKSVAEGVKEVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>UNIPROTKB|H0Y721 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR013848 PROSITE:PS51449 SMART:SM00729
GO:GO:0003824 GO:GO:0051539 EMBL:AL355392 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
Pfam:PF01938 HGNC:HGNC:15880 ChiTaRS:CDK5RAP1
ProteinModelPortal:H0Y721 PRIDE:H0Y721 Ensembl:ENST00000427097
Bgee:H0Y721 Uniprot:H0Y721
Length = 256
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 137 CMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSLDETYADITPKA 196
CMAERLK+ +L +E+ +D++AGPD+Y+DLPRLLA+ S Q A NVLLSLDETYAD+ P
Sbjct: 2 CMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQ 61
Query: 197 VSTDGRRSIYVDGRWSIYVD 216
S S +V R YV+
Sbjct: 62 TSASAT-SAFVYSR-EAYVE 79
>UNIPROTKB|O31778 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035597 "N6-isopentenyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14327 PIR:D69884 RefSeq:NP_389583.1
ProteinModelPortal:O31778 SMR:O31778
EnsemblBacteria:EBBACT00000002125 GeneID:939451 KEGG:bsu:BSU17010
PATRIC:18975209 GenoList:BSU17010 BioCyc:BSUB:BSU17010-MONOMER
GO:GO:0035597 Uniprot:O31778
Length = 509
Score = 219 (82.2 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 54/156 (34%), Positives = 86/156 (55%)
Query: 44 ILDEVRALSD--KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIR 101
I ++ + L D K Y +GCQMN +DTEV+ I + GY N +A+VIL+ TCAIR
Sbjct: 55 ISEQFKGLGDGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIR 114
Query: 102 ENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGP 159
ENAE KV+ L +++K+ + L +GV GCM+ E + +L+K +D++ G
Sbjct: 115 ENAENKVFGELGHLKALKKNNPD-----LILGVCGCMSQEESVVNRILKKHPFVDMIFGT 169
Query: 160 DSYKDLPRLLALTYSNQTAINVLLSLDETYADITPK 195
+ LP LL+ Y ++ + + S + + PK
Sbjct: 170 HNIHRLPELLSEAYLSKEMVVEVWSKEGDVIENLPK 205
Score = 163 (62.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQ 63
++ + +V+IM GCD CTYCIVP+TRG+ERSR + I+ EVR L+ + Y E+
Sbjct: 205 KVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLG 264
Query: 64 MNVN 67
NVN
Sbjct: 265 QNVN 268
>TIGR_CMR|CPS_3572 [details] [associations]
symbol:CPS_3572 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_270240.1 ProteinModelPortal:Q47Y80 STRING:Q47Y80
GeneID:3520404 KEGG:cps:CPS_3572 PATRIC:21470075
ProtClustDB:PRK14325 BioCyc:CPSY167879:GI48-3594-MONOMER
Uniprot:Q47Y80
Length = 480
Score = 202 (76.2 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K+Y + +GCQMN D++ + +L S+ G+S V +ADVIL+ TC+IRE A+ KV+
Sbjct: 1 MSKKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L ++++K KK L IGV GC+A + S+ ++ +D++ GP + LP +L
Sbjct: 61 HQLGRWKNLKD--KKP---DLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEML 115
Query: 170 -ALTYSNQTAINVLLSLDETYADIT-PKA 196
L +S I+V E + + PKA
Sbjct: 116 NQLQHSKSPIIDVSFPEIEKFDRLPEPKA 144
Score = 156 (60.0 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D SAFVSIM GC CT+C+VP+TRG E SRP+ +L E+ L+++ EV NVN
Sbjct: 145 DGASAFVSIMEGCSKYCTFCVVPYTRGEEVSRPLDDVLYEIAQLAEQGVREVNLLGQNVN 204
>TIGR_CMR|CHY_1398 [details] [associations]
symbol:CHY_1398 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_360230.1
ProteinModelPortal:Q3ACA4 STRING:Q3ACA4 GeneID:3726945
KEGG:chy:CHY_1398 PATRIC:21275927 ProtClustDB:PRK14328
BioCyc:CHYD246194:GJCN-1397-MONOMER TIGRFAMs:TIGR01579
Uniprot:Q3ACA4
Length = 440
Score = 194 (73.4 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 43/132 (32%), Positives = 79/132 (59%)
Query: 51 LSDKVYFEV-FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+++K Y+ + GCQMNV+D+E + IL+S G+ + AD+I++ TC++RE AE KV+
Sbjct: 1 MAEKSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMA--ERLKKSLLEKEQALDLVAGPDSYKDLPR 167
++ +K++ +++ L IGV GC+ E++ K LLE+ LD + G + +LP+
Sbjct: 61 TKIG---ELKKLKRENPD--LVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPK 115
Query: 168 LLALTYSNQTAI 179
+L + +
Sbjct: 116 ILERVFEKHERV 127
Score = 167 (63.8 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNV 66
E V A+V+IM GC+N CTYCIVP+ RGRERSR + IL E+R L + Y EV NV
Sbjct: 146 EPGVRAWVTIMYGCNNFCTYCIVPYVRGRERSRKKEDILQEIRQLVAEGYREVTLLGQNV 205
Query: 67 N 67
N
Sbjct: 206 N 206
>TIGR_CMR|ECH_0837 [details] [associations]
symbol:ECH_0837 "tRNA-i(6)A37 modification enzyme MiaB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
PROSITE:PS50926 TIGRFAMs:TIGR00089 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
RefSeq:YP_507633.1 ProteinModelPortal:Q2GG00 STRING:Q2GG00
GeneID:3927997 KEGG:ech:ECH_0837 PATRIC:20577090
BioCyc:ECHA205920:GJNR-840-MONOMER Uniprot:Q2GG00
Length = 442
Score = 191 (72.3 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 41/115 (35%), Positives = 69/115 (60%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y + +GCQMNV D+ ++ +I+K G++ VN P EA+++++ TC IRE A K++ L
Sbjct: 4 LYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSELG- 62
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
M++I + T L I V GC+A+ + + + +D+V GP S LP L+
Sbjct: 63 --KMRKIQE---TKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELI 112
Score = 149 (57.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 6 NEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMN 65
N++ VSAF+S+ GC+ CT+C+VP+TRG E SR +++I +E LSD E+ N
Sbjct: 144 NQE-VSAFISVQEGCNKFCTFCVVPYTRGEEYSRTVEAIFNEALVLSDSGVKEITLIGQN 202
Query: 66 VN 67
VN
Sbjct: 203 VN 204
>TIGR_CMR|APH_0880 [details] [associations]
symbol:APH_0880 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 RefSeq:YP_505456.1
ProteinModelPortal:Q2GJJ5 STRING:Q2GJJ5 GeneID:3929963
KEGG:aph:APH_0880 PATRIC:20950460 KO:K06168 OMA:RDSEHII
ProtClustDB:CLSK747303 BioCyc:APHA212042:GHPM-893-MONOMER
Uniprot:Q2GJJ5
Length = 444
Score = 187 (70.9 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 42/127 (33%), Positives = 70/127 (55%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
+Y E +GCQMNV D ++ +L+ GY+ V+ P +AD+IL+ TC IRE A K++ L
Sbjct: 5 LYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYSTLGR 64
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R + KK + V GC+A+ +++ E+ +++V GP LP L+
Sbjct: 65 MR----VIKKEECILI---VAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKR 117
Query: 175 NQTAINV 181
++ IN+
Sbjct: 118 DKKQINI 124
Score = 162 (62.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVF 60
+D + N VSA+VSI GCD CT+C+VP+TRG E SR +++IL+EV+ L+D+ E+
Sbjct: 137 IDRKAN-GGVSAYVSIQEGCDKFCTFCVVPYTRGPEYSRDVEAILEEVKQLTDRGTKEIV 195
Query: 61 GCQMNVN 67
NVN
Sbjct: 196 LIGQNVN 202
>TIGR_CMR|SO_1181 [details] [associations]
symbol:SO_1181 "tRNA-i(6)A37 modification enzyme MiaB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_716806.1 ProteinModelPortal:Q8CX45
GeneID:1169010 KEGG:son:SO_1181 PATRIC:23522002 Uniprot:Q8CX45
Length = 474
Score = 187 (70.9 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 40/130 (30%), Positives = 76/130 (58%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSIL-KSSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K++ + +GCQMN D+ + +L + GY+ EAD++L+ TC+IRE A+ KV+
Sbjct: 1 MSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L ++++K + L IGV GC+A + K++ ++ Q +D++ GP + LP ++
Sbjct: 61 HQLGRWKTLKD-----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMI 115
Query: 170 ALTYSNQTAI 179
+ A+
Sbjct: 116 EQVRRGEKAV 125
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC C++C+VP+TRG E SRP I+ E+ L+++ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCSFCVVPYTRGEEVSRPSDDIILEIAQLAEQGVREVNLLGQNVN 204
>UNIPROTKB|Q608N1 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243233 "Methylococcus
capsulatus str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AE017282 GenomeReviews:AE017282_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_113916.1 ProteinModelPortal:Q608N1 GeneID:3102404
KEGG:mca:MCA1459 PATRIC:22606754 Uniprot:Q608N1
Length = 458
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 49/156 (31%), Positives = 84/156 (53%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVW 109
+ K+Y E FGCQMN D+ + +L+ S + P EADV+L+ TC+IR+ A+ KV+
Sbjct: 1 MPQKLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L +R +K R + IGV GC+A + ++L ++ +D+V GP + LP +L
Sbjct: 61 SQLGRWRPIKL-----RRPEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSML 115
Query: 170 A-LTYSNQTAINVLLSLDETYADITPKAVSTDGRRS 204
+ + ++V E + D P+ DG ++
Sbjct: 116 EQVRCERRPVVDVSFPAIEKF-DALPEP-RADGPKA 149
Score = 149 (57.5 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 8 DSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
D AFVS+M GC CT+C+VP+TRG E SRP+ ++ E+ AL+++ EV NVN
Sbjct: 145 DGPKAFVSVMEGCGKYCTFCVVPYTRGEEISRPVDDVIAEIVALAEQGVREVNLLGQNVN 204
>TIGR_CMR|NSE_0832 [details] [associations]
symbol:NSE_0832 "tRNA-i(6)A37 modification enzyme MiaB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_506702.1
ProteinModelPortal:Q2GCU4 STRING:Q2GCU4 GeneID:3932248
KEGG:nse:NSE_0832 PATRIC:22681657 ProtClustDB:CLSK2528018
BioCyc:NSEN222891:GHFU-838-MONOMER Uniprot:Q2GCU4
Length = 471
Score = 185 (70.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/130 (32%), Positives = 75/130 (57%)
Query: 41 MQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAI 100
M+ I + +L K + + +GCQMNV D+E++ I+ G++ +AD+I++ TC I
Sbjct: 18 MEKIEKKNNSLK-KFHIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNI 76
Query: 101 RENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPD 160
RE A K++ L R +++ K+ R + I V GC+A+ + ++ + + +D+V GP
Sbjct: 77 REKAAEKLYSELGQIRLLQK-KKQER---ILIVVAGCVAQAEGEEIMRRAENVDVVVGPQ 132
Query: 161 SYKDLPRLLA 170
S LP L+A
Sbjct: 133 SIHSLPELIA 142
Score = 130 (50.8 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
SAF+SI GCD C +C+VP+TRG E SR + + E +L+ K E+ NVN
Sbjct: 178 SAFLSIQEGCDKFCAFCVVPYTRGAEYSRSTEEVYREALSLTTKGVKEITLLGQNVN 234
>UNIPROTKB|Q83DX3 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 43/117 (36%), Positives = 67/117 (57%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y + GCQMN D+ + +LK S G P ADV L+ TC++RE A+ KV+ L
Sbjct: 3 KLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSEL 62
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+R K+ + H + IGV GC+A + +++L++ +D+V GP + LP LL
Sbjct: 63 GRWRPFKE-KRPH----VVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLL 114
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
SAFVSIM GC CT+C+VP+TRG E SRP ++ EV +L ++ E+ NVND
Sbjct: 147 SAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQGVREITLLGQNVND 204
>TIGR_CMR|CBU_0569 [details] [associations]
symbol:CBU_0569 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 43/117 (36%), Positives = 67/117 (57%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILK-SSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K+Y + GCQMN D+ + +LK S G P ADV L+ TC++RE A+ KV+ L
Sbjct: 3 KLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSEL 62
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+R K+ + H + IGV GC+A + +++L++ +D+V GP + LP LL
Sbjct: 63 GRWRPFKE-KRPH----VVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLL 114
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
SAFVSIM GC CT+C+VP+TRG E SRP ++ EV +L ++ E+ NVND
Sbjct: 147 SAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQGVREITLLGQNVND 204
>UNIPROTKB|Q9KTE0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 178 (67.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 41/130 (31%), Positives = 75/130 (57%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K+ + +GCQMN D+ + +L ++ GY P EADV+L+ TC+IRE A+ KV+
Sbjct: 1 MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L ++++K KK IGV GC+A + S+ ++ +D++ GP + LP ++
Sbjct: 61 HQLGRWKTLKD--KKPGVV---IGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMI 115
Query: 170 ALTYSNQTAI 179
+ ++ +
Sbjct: 116 KQSQTSDAPV 125
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC CTYC+VP+TRG E SRPM +L E+ L+++ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVN 204
>TIGR_CMR|VC_0962 [details] [associations]
symbol:VC_0962 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 178 (67.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 41/130 (31%), Positives = 75/130 (57%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
+S K+ + +GCQMN D+ + +L ++ GY P EADV+L+ TC+IRE A+ KV+
Sbjct: 1 MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L ++++K KK IGV GC+A + S+ ++ +D++ GP + LP ++
Sbjct: 61 HQLGRWKTLKD--KKPGVV---IGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMI 115
Query: 170 ALTYSNQTAI 179
+ ++ +
Sbjct: 116 KQSQTSDAPV 125
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC CTYC+VP+TRG E SRPM +L E+ L+++ EV NVN
Sbjct: 148 TAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVN 204
>UNIPROTKB|P0AEI1 [details] [associations]
symbol:miaB "isopentenyl-adenosine A37 tRNA methylthiolase
MiaB" species:83333 "Escherichia coli K-12" [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 EMBL:U82598 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:C64801 RefSeq:NP_415194.1 RefSeq:YP_488952.1
ProteinModelPortal:P0AEI1 SMR:P0AEI1 DIP:DIP-48018N IntAct:P0AEI1
MINT:MINT-1233637 PaxDb:P0AEI1 PRIDE:P0AEI1
EnsemblBacteria:EBESCT00000004746 EnsemblBacteria:EBESCT00000015136
GeneID:12932238 GeneID:945260 KEGG:ecj:Y75_p0651 KEGG:eco:b0661
PATRIC:32116511 EchoBASE:EB3421 EcoGene:EG13657
BioCyc:EcoCyc:G6364-MONOMER BioCyc:ECOL316407:JW0658-MONOMER
BioCyc:MetaCyc:G6364-MONOMER Genevestigator:P0AEI1 Uniprot:P0AEI1
Length = 474
Score = 168 (64.2 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 37/120 (30%), Positives = 72/120 (60%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSS-GYSKVNHPREADVILVMTCAIRENAEGKVW 109
++ K++ + +GCQMN D+ + +L ++ GY + EADV+L+ TC+IRE A+ KV+
Sbjct: 1 MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF 60
Query: 110 DRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLL 169
+L ++ +K+ + L IGV GC+A + + + ++ +D++ GP + LP ++
Sbjct: 61 HQLGRWKLLKE-----KNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMI 115
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 11 SAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
+AFVSIM GC+ CTYC+VP+TRG E SRP IL E+ L+ + EV NVN
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVN 204
>TIGR_CMR|DET_1385 [details] [associations]
symbol:DET_1385 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 KO:K06168 OMA:RDSEHII RefSeq:YP_182095.1
ProteinModelPortal:Q3Z6Q4 STRING:Q3Z6Q4 GeneID:3229346
KEGG:det:DET1385 PATRIC:21609799 ProtClustDB:PRK14336
BioCyc:DETH243164:GJNF-1386-MONOMER Uniprot:Q3Z6Q4
Length = 418
Score = 155 (59.6 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 48/157 (30%), Positives = 77/157 (49%)
Query: 56 YFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRFY 115
Y GCQMN ++E + + + GYS + +A+++LV +C +RE+AE KV +RL
Sbjct: 5 YLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHIL 64
Query: 116 RSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKD---LPR--LLA 170
R +K K R LKI + GC+ + S+ +K +D + P + D +P +L
Sbjct: 65 RKLKD--KNPR---LKIALTGCLVGQDIASVRKKFPFVDYIFQPGALPDWGEIPEGFILP 119
Query: 171 LTYSNQTAINVLLSLDE--TYADITPKAVSTDGRRSI 205
L +I ++ D TY I P + RSI
Sbjct: 120 LKPPVSASITIMQGCDNFCTYC-IVPYRRGREKSRSI 155
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 10 VSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVN 67
VSA ++IM+GCDN CTYCIVP+ RGRE+SR + + E L + EV NV+
Sbjct: 124 VSASITIMQGCDNFCTYCIVPYRRGREKSRSISELCCEAAELVRRGSREVVLLGQNVD 181
>TIGR_CMR|CJE_0508 [details] [associations]
symbol:CJE_0508 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_178526.1 ProteinModelPortal:Q5HW09 STRING:Q5HW09
GeneID:3231269 KEGG:cjr:CJE0508 PATRIC:20042728
ProtClustDB:PRK14339 BioCyc:CJEJ195099:GJC0-518-MONOMER
Uniprot:Q5HW09
Length = 433
Score = 140 (54.3 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 32/106 (30%), Positives = 55/106 (51%)
Query: 54 KVYFEVFGCQMNVNDTE-VVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRL 112
K++ + GC MNV D+E ++ + + Y+ +EAD+IL+ TC++RE K++ +
Sbjct: 5 KLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEV 64
Query: 113 RFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAG 158
+ +K K KIGV GC A L + ++ +D V G
Sbjct: 65 GGFEKVK----KEGA---KIGVCGCTASHLGNEIFKRAPYVDFVLG 103
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEVFGCQMNVND 68
++++I GCD CTYCIVP TRG E S P I E + +K E+F NVN+
Sbjct: 143 SYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKAVEKGAKEIFLLGQNVNN 199
>TIGR_CMR|CHY_0419 [details] [associations]
symbol:CHY_0419 "MiaB-like tRNA modifying enzyme"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_359280.1 ProteinModelPortal:Q3AF04 STRING:Q3AF04
GeneID:3727815 KEGG:chy:CHY_0419 PATRIC:21273999 OMA:SEFNERS
BioCyc:CHYD246194:GJCN-420-MONOMER Uniprot:Q3AF04
Length = 434
Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
M ++L AFV I GC++ C YCI+P+ RG RSRP++ ++ EV+ L + E+
Sbjct: 134 MPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAEVKKLCQSGFSEI 192
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 35/134 (26%), Positives = 59/134 (44%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
KV F GC++N +TE + GY V+ AD+ ++ TC + ++ K +R
Sbjct: 3 KVAFYTLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIR 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTY 173
K + K R + +GC A+ + +L K ++LV G L L+
Sbjct: 63 -----KAVQKNPRAV---VAAVGCYAQVAPEEIL-KIPEVNLVLGTVHKNRLVELVEKVL 113
Query: 174 SNQTAINVLLSLDE 187
+T IN + S +E
Sbjct: 114 RERTKINAVASFEE 127
>TIGR_CMR|CHY_1164 [details] [associations]
symbol:CHY_1164 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125
RefSeq:YP_360009.1 ProteinModelPortal:Q3ACX5 STRING:Q3ACX5
GeneID:3726572 KEGG:chy:CHY_1164 PATRIC:21275468 KO:K14441
BioCyc:CHYD246194:GJCN-1163-MONOMER Uniprot:Q3ACX5
Length = 438
Score = 133 (51.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 50/160 (31%), Positives = 79/160 (49%)
Query: 56 YFEV-FGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCA-IRENAEGKVWDRLR 113
YF + GC N D+EV+ IL+S GY + +P E+D+++V TC I E + + L
Sbjct: 3 YFILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEILN 62
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLA-LT 172
+H K KI V GC+ +R K L + +DL P +L +LLA L
Sbjct: 63 L------VHLKKPG--QKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLG 114
Query: 173 YSNQTAINV--LLSLDETYADITPKAVSTDGRRSIYV-DG 209
+N+ ++ L+L++ P+A S + R I + DG
Sbjct: 115 ENNKLVLSEPGFLNLEKK-----PRAKSNEVYRYIKIADG 149
Score = 123 (48.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 4 RLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVR 49
R + V ++ I GCDN CTYC +P RG+ SRP+ IL+E++
Sbjct: 134 RAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSRPLDDILEEIK 179
>TIGR_CMR|SPO_0277 [details] [associations]
symbol:SPO_0277 "MiaB-like tRNA modifying enzyme"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_165541.1 ProteinModelPortal:Q5LX67
GeneID:3196395 KEGG:sil:SPO0277 PATRIC:23373805
ProtClustDB:CLSK933203 Uniprot:Q5LX67
Length = 418
Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
A+V + GCD+ CT+CI+P+ RG RS P ++D+++ L D+ Y EV
Sbjct: 139 AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDRGYNEV 186
>UNIPROTKB|Q747R0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 130 (50.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 4 RLNED-SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
RLN + +A++ I GC N C+YC++P RG RSRP++S+L E R+L
Sbjct: 143 RLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSL 191
>TIGR_CMR|GSU_3205 [details] [associations]
symbol:GSU_3205 "MiaB-like tRNA modifying enzyme YliG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 130 (50.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 4 RLNED-SVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRAL 51
RLN + +A++ I GC N C+YC++P RG RSRP++S+L E R+L
Sbjct: 143 RLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSL 191
>TIGR_CMR|CJE_1086 [details] [associations]
symbol:CJE_1086 "MiaB-like tRNA modifying enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
PIR:C81376 RefSeq:YP_179079.1 ProteinModelPortal:Q5HUF6
STRING:Q5HUF6 GeneID:3231595 KEGG:cjr:CJE1086 PATRIC:20043981
KO:K03423 OMA:GCRTNLF ProtClustDB:CLSK872324
BioCyc:CJEJ195099:GJC0-1112-MONOMER Uniprot:Q5HUF6
Length = 416
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/113 (29%), Positives = 60/113 (53%)
Query: 51 LSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWD 110
+ +KV+F+ FGC+ N+ DTE++ S +K Y +N +A +I+V +C + A+ +
Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKSYVKD--YEIINDENKAQIIVVNSCTVTNGADSGI-- 56
Query: 111 RLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYK 163
+ Y + Q KK +K+ + GC A K LL+K+Q ++ + K
Sbjct: 57 --KSYVNTMQ--KKG----IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDK 101
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
E+ AFV I GCD C+YCI+P RG+ RS +++L +V L Y E+
Sbjct: 130 ENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEI 182
>TIGR_CMR|CJE_1627 [details] [associations]
symbol:CJE_1627 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:195099 "Campylobacter jejuni RM1221" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR RefSeq:YP_179608.1
ProteinModelPortal:Q5HSX7 STRING:Q5HSX7 GeneID:3232255
KEGG:cjr:CJE1627 PATRIC:20045051 HOGENOM:HOG000224766
ProtClustDB:CLSK872428 BioCyc:CJEJ195099:GJC0-1657-MONOMER
GO:GO:0018339 TIGRFAMs:TIGR01125 Uniprot:Q5HSX7
Length = 439
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 35/127 (27%), Positives = 66/127 (51%)
Query: 54 KVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLR 113
K+Y GC N+ D+E++ L S Y + P +ADVI+V TC ++A+ +
Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES----- 55
Query: 114 FYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRL-LALT 172
++ +H++ + L + V GC+ +R ++ L+++ +DL G Y+ + + L T
Sbjct: 56 -INAILDLHEQRKKDSLLV-VTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKT 113
Query: 173 --YSNQT 177
+SN T
Sbjct: 114 NLFSNST 120
>UNIPROTKB|P54462 [details] [associations]
symbol:mtaB "Threonylcarbamoyladenosine tRNA
methylthiotransferase MtaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035598 "N6-threonylcarbomyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:D84432 TIGRFAMs:TIGR01579 EMBL:D83717 PIR:E69952
RefSeq:NP_390421.1 ProteinModelPortal:P54462 SMR:P54462
EnsemblBacteria:EBBACT00000000539 GeneID:937857 KEGG:bsu:BSU25430
PATRIC:18976924 GenoList:BSU25430 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 BioCyc:BSUB:BSU25430-MONOMER GO:GO:0035598
Uniprot:P54462
Length = 451
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
+DV D A + I GC+N CT+CI+P+ RG RSR + ++ + + L D Y E+
Sbjct: 134 LDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKEI 192
>UNIPROTKB|Q81LS6 [details] [associations]
symbol:BAS4209 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
+DV D A + I GC+N CT+CI+P+ RG RSR + ++ + + L D Y E+
Sbjct: 134 LDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKEI 192
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00021
Identities = 31/134 (23%), Positives = 61/134 (45%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V F GC++N +TE +W + K GY + + ++ADV ++ TC + + K +R
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR- 62
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R+++Q I V GC A+ ++ +D+V G + + +
Sbjct: 63 -RAVRQ------NPDAVICVTGCYAQTSPAEIMAIP-GVDIVVGTQDREKMLGYIEEFRK 114
Query: 175 NQTAINVLLSLDET 188
+ IN + ++ +T
Sbjct: 115 ERQPINAVRNIMKT 128
>TIGR_CMR|BA_4535 [details] [associations]
symbol:BA_4535 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1 MDVRLNEDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
+DV D A + I GC+N CT+CI+P+ RG RSR + ++ + + L D Y E+
Sbjct: 134 LDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKEI 192
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00021
Identities = 31/134 (23%), Positives = 61/134 (45%)
Query: 55 VYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF 114
V F GC++N +TE +W + K GY + + ++ADV ++ TC + + K +R
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR- 62
Query: 115 YRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYS 174
R+++Q I V GC A+ ++ +D+V G + + +
Sbjct: 63 -RAVRQ------NPDAVICVTGCYAQTSPAEIMAIP-GVDIVVGTQDREKMLGYIEEFRK 114
Query: 175 NQTAINVLLSLDET 188
+ IN + ++ +T
Sbjct: 115 ERQPINAVRNIMKT 128
>UNIPROTKB|Q74A23 [details] [associations]
symbol:mtaB "tRNA (2-methylthio-N6-threonylcarbamyl-A37)
methylthiotransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:NP_953614.1
ProteinModelPortal:Q74A23 GeneID:2686393 KEGG:gsu:GSU2568
PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
AF+ + GCD C+YCIVP RGR RS P + +L+ + + + + EV
Sbjct: 143 AFLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIGTFAYQGFREV 190
>TIGR_CMR|GSU_2568 [details] [associations]
symbol:GSU_2568 "MiaB-like tRNA modifying enzyme"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 GO:GO:0009451 TIGRFAMs:TIGR00089
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:VITFGCR
RefSeq:NP_953614.1 ProteinModelPortal:Q74A23 GeneID:2686393
KEGG:gsu:GSU2568 PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 12 AFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
AF+ + GCD C+YCIVP RGR RS P + +L+ + + + + EV
Sbjct: 143 AFLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIGTFAYQGFREV 190
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 285 267 0.00095 114 3 11 22 0.42 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 603 (64 KB)
Total size of DFA: 205 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.86u 0.10s 21.96t Elapsed: 00:00:01
Total cpu time: 21.86u 0.10s 21.96t Elapsed: 00:00:01
Start: Thu Aug 15 14:20:02 2013 End: Thu Aug 15 14:20:03 2013