RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3863
(285 letters)
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; HET: CXS; 2.00A {Thermotoga
maritima MSB8}
Length = 304
Score = 66.8 bits (164), Expect = 6e-13
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 7 EDSVSAFVSIMRGCDNMCTYCIVPFTRGRERSRPMQSILDEVRALSDK 54
E+ A+V I GCD CT+C +P +G RSR ++ I EV L +
Sbjct: 1 EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-09
Identities = 42/306 (13%), Positives = 83/306 (27%), Gaps = 115/306 (37%)
Query: 19 GCDNMCTYCIVPFTRGRERSRPMQS---------ILDEVRALSDKVYFEVF--GCQM--- 64
D+ + + R + +L V+ + + F C++
Sbjct: 216 RSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLSCKILLT 271
Query: 65 ----NVND------TEVVWSILKSSGYSK----------VNH-----PREADVILVMTCA 99
V D T + S + ++ PRE +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 100 I-----RENAEGKVWDRLRFYRSMKQIH-----------KKHRT-------FP--LKI-- 132
I R+ WD + K ++R FP I
Sbjct: 332 IIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 133 GVLGC-------------MAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAI 179
+L + + K SL+EK+ + S + L + N+ A+
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLENEYAL 445
Query: 180 NVLLSLDETYADITPKAVSTDGRRSIYVDGRW---------------------SIYVDGR 218
+ S+ + Y PK +D Y+D + +++D R
Sbjct: 446 HR--SIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 219 W-RRKL 223
+ +K+
Sbjct: 502 FLEQKI 507
Score = 38.3 bits (88), Expect = 0.002
Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 57/197 (28%)
Query: 140 ERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAIN---VLLSLDETY----ADI 192
+ + KS+L KE+ ++ D+ RL S Q + V L Y + I
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 193 TPKAVSTDGRRSIYVDGRWSIYVDGR-------WRRKLGQQM--------------VDGR 231
+ +Y++ R +Y D + R + ++ +DG
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG- 157
Query: 232 SMSMDDGGGAS----------------------MSSRQCGRFQSTLIDGHRLC--VTQLY 267
+ G G + ++ + C ++ L +L + +
Sbjct: 158 -VL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 268 LTNQDYPIPRKIRNSSL 284
+ D+ K+R S+
Sbjct: 214 TSRSDHSSNIKLRIHSI 230
Score = 36.4 bits (83), Expect = 0.012
Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 43/218 (19%)
Query: 42 QSILDEVR-ALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSK----VNHPREADVILVM 96
+ + D + LS + + + V+ T ++ L S V + +M
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 97 TCAIRENAEGK-------VWDRLRFYRSMKQIHKKHRTFPLKIGVLGCMAERLKKSLLEK 149
+ I+ + R R Y + K + + +L+++LLE
Sbjct: 96 S-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-------LKLRQALLEL 147
Query: 150 EQALDLV----AG-------PDSYKDLPRLLA-------LTYSNQTAINVLLS-LDETYA 190
A +++ G D L N + +L L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 191 DITPKAVS-TDGRRSIYVDGRWSIYVDGRWRRKLGQQM 227
I P S +D +I + + RR L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKP 242
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 1e-04
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 143 KKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQTAIN 180
K++L + + +L L A DS P AL AI
Sbjct: 19 KQALKKLQASLKLYA-DDS---AP---AL------AIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 48/292 (16%), Positives = 84/292 (28%), Gaps = 95/292 (32%)
Query: 34 GRERSRPMQSILDEVRALSD---KVYFEVFGCQMNVND--TEVVWSILKS--SGYSKVNH 86
R + S L RA+ + ++ +FG Q N +D E L+ Y H
Sbjct: 134 KRPFDKKSNSAL--FRAVGEGNAQLV-AIFGGQGNTDDYFEE-----LRDLYQTY----H 181
Query: 87 PREADVILVMTCAIRENAEGKVWDRLRFYRS----MKQIHKKHRT------------FPL 130
D+I + E + D + + ++ + T PL
Sbjct: 182 VLVGDLIKFSAETLSELIRTTL-DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 131 KIGV--LGCMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALTYSNQ--TAINVLLSLD 186
IGV L K + + G A +S TA+ + +
Sbjct: 241 -IGVIQLAHYVVTAKLLGFTPGELRSYLKG-----------ATGHSQGLVTAVAIAETDS 288
Query: 187 -ETYADITPKAVSTDGRRSIYVDGRWSIYVDGRWRRKLGQQMVDGRSM-------SMDDG 238
E++ KA+ ++ G R + S+ S+++
Sbjct: 289 WESFFVSVRKAI------------TVLFFI-G-VR---CYEAYPNTSLPPSILEDSLENN 331
Query: 239 GGA--SMSSRQCGRFQSTLIDGHRLCVTQLYL--TNQDYPIPRKI----RNS 282
G M S I Q Y+ TN P +++ N
Sbjct: 332 EGVPSPMLS----------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Score = 38.1 bits (88), Expect = 0.003
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 51/154 (33%)
Query: 35 RERSRPMQSILDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVIL 94
+ S+ Q + + RA D + + +G +SIL +N+P +
Sbjct: 1636 YKTSKAAQDVWN--RA--DNHFKDTYG-----------FSILDIV----INNPVNLTIHF 1676
Query: 95 --VMTCAIRENAEGKVWDRLRFYRSMKQIHKKHRTFPLKIGVLGCM-AERLKKSLLEKEQ 151
IREN Y +M F + V G + E++ K + E
Sbjct: 1677 GGEKGKRIREN-----------YSAM--------IF--ETIVDGKLKTEKIFKEINEHST 1715
Query: 152 ALDLVAGPDSYKDLPRLLALTYSNQTAINVLLSL 185
+ LL+ T Q A+ L+
Sbjct: 1716 SYTF-RSEKG------LLSATQFTQPAL-TLMEK 1741
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 30.2 bits (69), Expect = 0.90
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 94 LVMTCAIRENAEGKVWDRLRFYRSMKQIHKKHR 126
V+ C + +A+G + D + F+ + I K +
Sbjct: 280 PVLACRMTLSADGTIEDNIEFFAAT--IESKAK 310
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior
reductase, thioredoxin; HET: FAD; 2.00A {Salmonella
typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2
PDB: 1zyn_A 1zyp_A
Length = 521
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 28 IVPFTRGRERSRPMQSILDEVRALSDKVYFE 58
++ +S ++ +L E+ LSDKV F+
Sbjct: 23 LIATLDDSAKSAEIKELLAEIAELSDKVTFK 53
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 27.5 bits (62), Expect = 5.8
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 66 VNDTEVVWSILKSSGYSKVNHPREADVILVMTCAIRENAEGKVWDRLRF--YRSMKQIHK 123
V + E + ILKS G + R +++ TC R+ + +K++ +
Sbjct: 249 VVEVETAYEILKSLGLRR----RGVEIVACPTCG-----------RIEVDLPKVVKEVQE 293
Query: 124 K--HRTFPLKIGVLGC 137
K PLK+ V+GC
Sbjct: 294 KLSGVKTPLKVAVMGC 309
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged
DNA; HET: EEM 0TT; 2.00A {Geobacillus
thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A*
4fhf_A*
Length = 368
Score = 27.4 bits (60), Expect = 5.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 14 VSIMRGCDNMCTYCIVPFTRGR 35
+ + GC C YC + T G
Sbjct: 111 IPLATGCMGHCHYCYLQTTLGS 132
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase,
F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces
cerevisiae}
Length = 471
Score = 27.4 bits (60), Expect = 6.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 66 VNDTEVVWSILKSSGYSKVNHPREADVIL 94
VNDTE W +L + + D +L
Sbjct: 226 VNDTEKAWEVLTKARADANSREIRVDFVL 254
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 27.1 bits (60), Expect = 6.3
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 23/96 (23%)
Query: 88 READVILVMTCAIRENAEGKVWDRLRFYRSMKQI--------H---KKHRTFPLKIGVLG 136
+ D+I + T I EN+ + + + H K+
Sbjct: 131 KSCDII-ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV---------- 179
Query: 137 CMAERLKKSLLEKEQALDLVAGPDSYKDLPRLLALT 172
++ L++K + L LP++L LT
Sbjct: 180 -YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLT 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.409
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,370,157
Number of extensions: 257500
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 17
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)