RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3863
         (285 letters)



>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit
          F (AhpF), N-terminal domain {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 102

 Score = 30.4 bits (69), Expect = 0.057
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 28 IVPFTRGRERSRPMQSILDEVRALSDKVYFEV 59
          ++       +S  ++ +L E+  LSDKV F+ 
Sbjct: 23 LIATLDDSAKSAEIKELLAEIAELSDKVTFKE 54


>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 31.4 bits (71), Expect = 0.098
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 39  RPMQSI-LDEVRALSDKVYFEVFGCQMNVNDTEVVWSILKSSGYSKVNHPREADVILVMT 97
           R ++   +D+V  L  + Y   F         E   + +      + + P +  VI    
Sbjct: 44  RKLKKEDIDQVFELFKR-YQSRFELIQIFTKEEFEHNFIG-----EESLPLDKQVI---F 94

Query: 98  CAIRENAEGKVWDRLRFYRSMKQI--HKKHRTFPLKIGVLGCMAERLKKSLLEKEQALDL 155
             + E  +GK+ D   FY     I  + K++   L IG L   A        ++      
Sbjct: 95  SYVVEQPDGKITDFFSFYSLPFTILNNTKYKD--LGIGYLYYYATDADFQFKDRFDPKAT 152

Query: 156 VAGPDSYKDLPRLLALTYSNQTAINVLLSLD 186
            A      +L    A   +    ++V  +L 
Sbjct: 153 KALKTRLCELIY-DACILAKNANMDVFNALT 182


>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 119

 Score = 26.8 bits (59), Expect = 1.6
 Identities = 5/26 (19%), Positives = 15/26 (57%)

Query: 34 GRERSRPMQSILDEVRALSDKVYFEV 59
            +    ++ ++ E+  L+DK+ +E+
Sbjct: 34 HCQYCDQLKQLVQELSELTDKLSYEI 59


>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 128

 Score = 25.7 bits (56), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 130 LKIGVLGC---MAERLKKSLLEKEQALDLVAGPDS 161
           +K G++G    M + ++K   EK    +LV   D 
Sbjct: 1   MKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDV 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,723
Number of extensions: 48159
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 6
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)