BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3865
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNAVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVGLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 59/84 (70%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI P
Sbjct: 44 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 103
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 104 CPDVKYGKRIHVLPIDDTVEGITG 127
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXX 81
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI
Sbjct: 25 QPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 84
Query: 82 XPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP + YGKRIHVLPIDD+V+G+TG
Sbjct: 85 QPCPDVKYGKRIHVLPIDDTVEGITG 110
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXX 81
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKI
Sbjct: 23 QPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 82
Query: 82 XPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP + YGKRIHVLPIDD+V+G+TG
Sbjct: 83 QPCPDVKYGKRIHVLPIDDTVEGITG 108
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 58/84 (69%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIXXXXXXXXXXXXXXXXXXXXXP 83
KMDEL LFRGDTVLL+G +R+E+VCIVLSDDTC DEKI P
Sbjct: 48 KMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 107
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 108 CPDVKYGKRIHVLPIDDTVEGITG 131
>pdb|3UZ0|A Chain A, Crystal Structure Of Spoiiiah And Spoiiq Complex
pdb|3UZ0|C Chain C, Crystal Structure Of Spoiiiah And Spoiiq Complex
Length = 133
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 21 ESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEK 60
E+A D +R D R K R+E IV SDD EK
Sbjct: 14 ETADDDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEK 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.144 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,395,843
Number of Sequences: 62578
Number of extensions: 60886
Number of successful extensions: 136
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 24
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)