BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3865
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 79/86 (91%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVRL DV+S+
Sbjct: 43 QAKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 102
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP + YGKRIHVLPIDD+V+G+TG
Sbjct: 103 QPCPDVKYGKRIHVLPIDDTVEGITG 128
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 79/86 (91%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEK+RMNRV+RNNLRVRL DV+S+
Sbjct: 43 QAKMDELQLFRGDTVLLKGKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISI 102
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP + YGKRIHVLPIDD+V+G+TG
Sbjct: 103 QPCPDVKYGKRIHVLPIDDTVEGITG 128
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 79/86 (91%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVRL DV+S+
Sbjct: 43 QAKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 102
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP + YGKR+HVLPIDD+V+G+TG
Sbjct: 103 QPCPDVKYGKRVHVLPIDDTVEGITG 128
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 78/84 (92%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVRL DV+S+ P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 78/84 (92%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVRL DV+S+ P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 78/84 (92%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVRL DV+S+ P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 77/84 (91%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRV L DV+S+ P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 77/84 (91%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRV L DV+S+ P
Sbjct: 45 KMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQP 104
Query: 84 CPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKRIHVLPIDD+V+G+TG
Sbjct: 105 CPDVKYGKRIHVLPIDDTVEGITG 128
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGDTV+L+GKRRKE+VCIVLSDDTCPDEKIRMNRV+RNNL V LSDVVS+
Sbjct: 40 QAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSV 99
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKR+ +LPID+S +G+TG
Sbjct: 100 QSCPDVKYGKRVRILPIDESTEGVTG 125
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 76/86 (88%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGD V+L+GK+RKESV I++SD++CP+EK+RMNRV+RNNLR+RL DVVS+
Sbjct: 49 QAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSI 108
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
P P + YG RIHVLPIDD+++GLTG
Sbjct: 109 TPAPNLSYGTRIHVLPIDDTIEGLTG 134
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 75/85 (88%)
Query: 23 AKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLV 82
A M++L LFRGDT+L++GK+RK++VCI L+D+TC + KIRMN+V+R+NLRVRL DV+S+
Sbjct: 48 ATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVH 107
Query: 83 PCPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKR+H+LP+DD+V+G+TG
Sbjct: 108 QCPDVKYGKRVHILPVDDTVEGVTG 132
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 74/83 (89%)
Query: 25 MDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84
M++L LFRGDT+L++GK+RK++VCI L+D+TC + KIRMN+V+R+NLRVRL DV+S+ C
Sbjct: 50 MEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQC 109
Query: 85 PGIVYGKRIHVLPIDDSVQGLTG 107
P + YGKR+H+LP+DD+V+G+TG
Sbjct: 110 PDVKYGKRVHILPVDDTVEGVTG 132
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 23 AKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLV 82
A M++L LFRGDT+L++GK+RK++V I L+D+TC + KIRMN+V+R+NLRVRL DVVS+
Sbjct: 49 ATMEKLQLFRGDTILIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVH 108
Query: 83 PCPGIVYGKRIHVLPIDDSVQGLTG 107
CP + YGKR+H+LPIDD+++GLTG
Sbjct: 109 QCPDVKYGKRVHILPIDDTIEGLTG 133
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 73/83 (87%)
Query: 25 MDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84
M++L LFRGDT+L++GK+RK+++CI L+D+ C + KIRMN+V+R+NLRVRL DVVS+ C
Sbjct: 51 MEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQC 110
Query: 85 PGIVYGKRIHVLPIDDSVQGLTG 107
P + YGKR+H+LPIDD+++G+TG
Sbjct: 111 PDVKYGKRVHILPIDDTIEGVTG 133
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2
OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2
Length = 810
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
AKMDEL LFRGD+V+L+GK+R+E+V IVL+ D CP++KI+MN+V+RNNLR RL DVVS
Sbjct: 49 QAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVS- 107
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
+ + YGKR+HVLPIDD+++GLTG
Sbjct: 108 ISSAQLEYGKRVHVLPIDDTIEGLTG 133
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 73/83 (87%)
Query: 25 MDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84
M++L LFRGDT+L++GK+RK++VCI L+D+TC + KIRMN+V+R+NLRVRL DV+S+ C
Sbjct: 51 MEKLQLFRGDTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQC 110
Query: 85 PGIVYGKRIHVLPIDDSVQGLTG 107
P + YG R+H+LP+DD+++G++G
Sbjct: 111 PDVKYGNRVHILPLDDTIEGVSG 133
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 108 bits (270), Expect = 9e-24, Method: Composition-based stats.
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
S MD+L LFRGDTVL++GK+RK++V IVL DD D R+NRV+RNNLR+RL D+V++
Sbjct: 53 SNTMDKLELFRGDTVLVKGKKRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTI 112
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP I Y RI VLPI D+++G+TG
Sbjct: 113 HPCPDIKYATRISVLPIADTIEGITG 138
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 25 MDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84
MD L LFRGDTV +RGK+RKE+V IVL+DD D R+NRV+R+NLRV+ D++++ PC
Sbjct: 67 MDTLGLFRGDTVTVRGKKRKETVLIVLADDDLDDGSARINRVVRHNLRVKHGDIITVHPC 126
Query: 85 PGIVYGKRIHVLPIDDSVQGLTG 107
P I Y KRI VLPI D+V+GLTG
Sbjct: 127 PDIKYAKRIAVLPIADTVEGLTG 149
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 68/86 (79%)
Query: 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSL 81
S M+ L LFRGDTV+++GKRRK++V IVL+D+ D R+NRV+RNNLRVRL D+V++
Sbjct: 63 SNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTI 122
Query: 82 VPCPGIVYGKRIHVLPIDDSVQGLTG 107
PCP I Y +RI VLP+ D+V+GLTG
Sbjct: 123 NPCPDIKYAERISVLPLADTVEGLTG 148
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum
(isolate 3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 24 KMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83
KMDELN+ G TVLL+GK+++E + I D + + ++ M+ NLR+ +D++ + P
Sbjct: 362 KMDELNINDGATVLLKGKKKREMLGIARLDRSLKKHYVVISFAMKKNLRLMHNDIIKIHP 421
Query: 84 CPGIVYGKRIHVLPIDDSVQGLT 106
+ + + P D++ L+
Sbjct: 422 FMNAKRIRNVVLSPFSDTIPNLS 444
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 25 MDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84
++EL LF D V + GK++ E + ++ ++ P I + R R NLR+R++D V L
Sbjct: 45 LNELELFESDYVRILGKKKAELIFSTVALESVPPRHIAIVRDGRFNLRIRITDTVKLYRV 104
Query: 85 -PGIVYGKRIHVLPIDDSVQGLTG 107
I +++ LPI D+V+ + G
Sbjct: 105 DKDIPVVSKLNFLPIKDTVENIRG 128
>sp|O07622|YHFW_BACSU Putative Rieske 2Fe-2S iron-sulfur protein YhfW OS=Bacillus
subtilis (strain 168) GN=yhfW PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 13 LLRGKRRKESAKMDELNLFRGDTVLLRGKR----RKESVCIVLSDDTC 56
L++GK K + ++++ G V + G+R R E+ C+ L D TC
Sbjct: 416 LIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTC 463
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,112,908
Number of Sequences: 539616
Number of extensions: 1258164
Number of successful extensions: 2351
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2308
Number of HSP's gapped (non-prelim): 44
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)