Query psy3865
Match_columns 107
No_of_seqs 113 out of 396
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:25:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwz_A Transitional endoplasmi 100.0 6.8E-31 2.3E-35 195.7 10.2 93 15-107 39-131 (211)
2 3tiw_A Transitional endoplasmi 100.0 5.8E-31 2E-35 193.0 9.4 93 15-107 36-128 (187)
3 1cz4_A VCP-like ATPase; double 99.9 3.7E-26 1.3E-30 166.9 9.4 86 15-103 21-111 (185)
4 1ypw_A Transitional endoplasmi 99.9 6.7E-24 2.3E-28 180.7 9.4 92 16-107 37-128 (806)
5 3hu3_A Transitional endoplasmi 99.9 1.3E-23 4.4E-28 171.0 10.3 91 16-106 37-127 (489)
6 3cf2_A TER ATPase, transitiona 99.9 1E-21 3.5E-26 168.3 9.2 93 15-107 36-128 (806)
7 1wlf_A PEX1, peroxisome biogen 99.8 6.4E-21 2.2E-25 138.5 8.4 83 15-99 24-110 (179)
8 3tiw_A Transitional endoplasmi 98.4 3.3E-07 1.1E-11 66.7 5.5 81 1-83 46-156 (187)
9 3qwz_A Transitional endoplasmi 98.3 4.1E-07 1.4E-11 67.3 4.2 82 1-82 49-158 (211)
10 1cz4_A VCP-like ATPase; double 97.9 2.4E-05 8.1E-10 56.6 5.9 53 1-53 31-104 (185)
11 2glw_A PHS018, 92AA long hypot 97.2 0.00049 1.7E-08 44.7 4.5 69 12-83 11-84 (92)
12 1ypw_A Transitional endoplasmi 97.1 0.0018 6E-08 55.3 8.6 83 1-83 46-156 (806)
13 2ki8_A Tungsten formylmethanof 97.0 0.0014 4.8E-08 45.3 5.6 49 16-66 53-101 (146)
14 3hu3_A Transitional endoplasmi 96.8 0.00096 3.3E-08 54.0 4.0 53 1-53 46-120 (489)
15 1wlf_A PEX1, peroxisome biogen 96.7 0.0016 5.4E-08 46.6 4.4 53 1-53 34-110 (179)
16 3cf2_A TER ATPase, transitiona 96.7 0.0018 6.1E-08 55.8 5.1 82 1-82 46-155 (806)
17 2yuj_A Ubiquitin fusion degrad 96.2 0.03 1E-06 40.8 8.3 84 17-102 42-129 (190)
18 1cr5_A SEC18P (residues 22 - 2 96.0 0.012 4.2E-07 42.2 5.4 59 17-84 23-81 (189)
19 1zc1_A Ubiquitin fusion degrad 95.6 0.048 1.6E-06 40.2 7.2 84 17-102 47-134 (208)
20 3oug_A Aspartate 1-decarboxyla 95.5 0.057 1.9E-06 36.3 6.8 63 16-84 27-93 (114)
21 1vc3_B L-aspartate-alpha-decar 95.3 0.046 1.6E-06 35.8 5.8 60 19-84 3-66 (96)
22 1qcs_A N-ethylmaleimide sensit 95.3 0.044 1.5E-06 39.9 6.3 62 17-84 25-87 (211)
23 3plx_B Aspartate 1-decarboxyla 95.1 0.038 1.3E-06 36.5 4.8 59 19-84 3-65 (102)
24 1pqh_A Aspartate 1-decarboxyla 95.1 0.059 2E-06 37.6 6.0 63 16-84 41-107 (143)
25 1eu1_A Dimethyl sulfoxide redu 95.0 0.034 1.2E-06 46.7 5.7 47 17-64 668-714 (780)
26 1tmo_A TMAO reductase, trimeth 95.0 0.039 1.3E-06 46.7 5.9 47 17-64 708-754 (829)
27 2vpz_A Thiosulfate reductase; 95.0 0.052 1.8E-06 45.6 6.6 49 17-66 648-698 (765)
28 2e7z_A Acetylene hydratase AHY 94.9 0.04 1.4E-06 45.8 5.7 49 16-65 625-673 (727)
29 3i9v_3 NADH-quinone oxidoreduc 94.8 0.071 2.4E-06 45.2 7.0 63 16-84 714-776 (783)
30 1g8k_A Arsenite oxidase; molyb 94.8 0.049 1.7E-06 46.2 5.9 48 17-65 727-774 (825)
31 2iv2_X Formate dehydrogenase H 94.5 0.042 1.4E-06 45.7 4.9 49 16-65 606-654 (715)
32 2c45_A Aspartate 1-decarboxyla 94.5 0.078 2.7E-06 36.8 5.4 64 16-85 24-91 (139)
33 2nap_A Protein (periplasmic ni 94.3 0.04 1.4E-06 45.8 4.3 48 17-65 642-689 (723)
34 1ti6_A Pyrogallol hydroxytrans 94.0 0.05 1.7E-06 46.4 4.5 49 16-65 770-818 (875)
35 4aay_A AROA; oxidoreductase, r 94.0 0.092 3.2E-06 45.1 6.0 48 17-65 745-792 (845)
36 1uhe_A Aspartate 1-decarboxyla 93.9 0.19 6.5E-06 32.9 6.1 60 19-85 2-65 (97)
37 1yfb_A Transition state regula 93.8 0.11 3.9E-06 30.8 4.6 39 57-100 20-58 (59)
38 2glw_A PHS018, 92AA long hypot 93.6 0.064 2.2E-06 34.5 3.4 38 2-39 25-83 (92)
39 2ivf_A Ethylbenzene dehydrogen 93.5 0.079 2.7E-06 45.9 4.8 48 17-65 873-920 (976)
40 3ml1_A NAPA, periplasmic nitra 93.4 0.14 4.7E-06 43.6 6.0 48 17-65 719-768 (802)
41 1yfb_A Transition state regula 92.7 0.29 1E-05 28.9 5.2 28 15-42 21-48 (59)
42 1q16_A Respiratory nitrate red 91.5 0.16 5.6E-06 45.6 4.3 47 17-64 1117-1163(1247)
43 2l66_A SSO7C4, transcriptional 91.4 0.12 4.2E-06 29.6 2.3 28 15-42 11-38 (53)
44 1kqf_A FDH-N alpha, formate de 91.4 0.33 1.1E-05 42.2 6.0 41 17-58 919-959 (1015)
45 1h0h_A Formate dehydrogenase ( 91.3 0.34 1.2E-05 42.0 5.9 47 17-64 881-935 (977)
46 1zc1_A Ubiquitin fusion degrad 90.9 0.14 4.8E-06 37.7 2.8 69 15-83 91-164 (208)
47 2yuj_A Ubiquitin fusion degrad 90.8 0.092 3.2E-06 38.1 1.6 68 16-83 87-159 (190)
48 2d9r_A Conserved hypothetical 90.5 0.72 2.5E-05 30.2 5.7 62 17-83 38-101 (104)
49 3i4o_A Translation initiation 88.2 0.8 2.7E-05 28.6 4.4 26 59-84 39-65 (79)
50 1mvf_D MAZE protein, PEMI-like 87.9 0.63 2.2E-05 28.5 3.8 27 15-41 12-38 (82)
51 1mvf_D MAZE protein, PEMI-like 85.2 0.97 3.3E-05 27.6 3.6 37 59-100 13-49 (82)
52 2l66_A SSO7C4, transcriptional 84.0 0.65 2.2E-05 26.4 2.2 37 57-98 10-46 (53)
53 3idw_A Actin cytoskeleton-regu 82.4 0.064 2.2E-06 33.4 -2.8 20 20-39 39-58 (72)
54 1a62_A RHO; transcription term 80.3 1.5 5.1E-05 29.6 3.2 22 18-39 79-100 (130)
55 2w1t_A Spovt, stage V sporulat 74.5 4.6 0.00016 28.8 4.6 40 57-100 12-51 (178)
56 1gut_A Mopii, molybdate bindin 73.1 3.1 0.00011 23.8 2.9 25 18-42 37-61 (68)
57 3a4r_A Nfatc2-interacting prot 70.7 1.7 5.7E-05 26.4 1.3 22 19-40 57-79 (79)
58 2w1t_A Spovt, stage V sporulat 68.6 4 0.00014 29.1 3.1 27 15-41 13-39 (178)
59 2gcx_A FEOA, ferrous iron tran 67.8 5.5 0.00019 23.4 3.2 38 4-41 1-42 (75)
60 1jt8_A EIF-1A, probable transl 66.0 3.1 0.00011 27.1 1.9 26 59-84 45-70 (102)
61 2xvs_A Tetratricopeptide repea 65.6 6.4 0.00022 27.8 3.7 47 46-96 83-139 (166)
62 1d7q_A Translation initiation 65.4 5.4 0.00018 27.5 3.2 37 59-95 56-93 (143)
63 2oqk_A Putative translation in 63.3 11 0.00039 24.7 4.4 39 59-97 57-96 (117)
64 2lx9_A Ferrous iron transport 63.3 14 0.00048 22.5 4.6 38 4-41 1-42 (83)
65 3bmb_A Regulator of nucleoside 62.2 16 0.00054 24.3 5.0 63 21-83 45-111 (136)
66 1fr3_A MOP, molybdate/tungstat 61.9 5.9 0.0002 22.2 2.5 26 17-42 35-60 (67)
67 3o27_A Putative uncharacterize 61.8 6.9 0.00024 23.8 2.8 22 18-39 27-48 (68)
68 2h3j_A Hypothetical protein PA 61.5 13 0.00043 21.6 4.0 37 5-41 3-43 (75)
69 2jxx_A Nfatc2-interacting prot 60.8 2.3 7.7E-05 27.4 0.5 18 23-40 80-97 (97)
70 1wm3_A Ubiquitin-like protein 59.6 3.3 0.00011 24.4 1.1 16 23-38 55-70 (72)
71 2pn0_A Prokaryotic transcripti 59.4 17 0.00059 24.3 4.8 63 21-83 48-114 (141)
72 3mhx_A Putative ferrous iron t 59.1 15 0.00053 22.1 4.2 38 5-42 6-48 (85)
73 2k5l_A FEOA; structure, NESG, 58.1 13 0.00044 22.3 3.7 36 5-41 6-44 (81)
74 2k4y_A FEOA-like protein; GFT 56.9 13 0.00044 22.6 3.6 36 5-41 9-47 (86)
75 3goe_A DNA repair protein RAD6 55.6 5.5 0.00019 25.1 1.6 25 6-38 54-79 (82)
76 2k5f_A Ferrous iron transport 53.5 24 0.00083 22.5 4.6 36 5-41 5-43 (105)
77 2dgy_A MGC11102 protein; EIF-1 53.4 7.1 0.00024 25.7 2.0 27 58-84 39-65 (111)
78 1hr0_W Translation initiation 52.8 12 0.0004 22.3 2.8 26 59-84 32-58 (71)
79 2p4v_A Transcription elongatio 51.4 16 0.00055 25.0 3.7 63 21-83 76-141 (158)
80 1umu_A UMUD'; induced mutagene 50.2 22 0.00076 22.3 4.0 21 19-39 31-51 (116)
81 2io0_B Small ubiquitin-related 50.1 5.1 0.00018 25.1 0.9 21 19-39 54-75 (91)
82 2f23_A Anti-cleavage anti-GREA 49.1 33 0.0011 23.2 5.0 55 29-83 82-142 (156)
83 1ah9_A IF1, initiation factor 48.7 8.5 0.00029 22.8 1.7 26 59-84 31-57 (71)
84 1jhf_A LEXA repressor; LEXA SO 47.6 19 0.00065 24.6 3.6 22 18-39 113-134 (202)
85 2gjh_A Designed protein; oblig 47.2 8.6 0.00029 22.3 1.4 11 7-17 39-49 (62)
86 3e19_A FEOA; transcriptional r 46.0 26 0.0009 20.4 3.7 37 5-42 9-48 (77)
87 2io1_B Small ubiquitin-related 45.1 8.8 0.0003 24.0 1.4 21 19-39 56-77 (94)
88 3zv0_C H/ACA ribonucleoprotein 45.0 30 0.001 24.9 4.4 23 15-39 124-146 (195)
89 2hnf_A Repressor protein CI101 44.9 29 0.001 22.3 4.0 20 20-39 49-73 (133)
90 3ijw_A Aminoglycoside N3-acety 43.7 12 0.00041 28.1 2.2 17 23-39 22-38 (268)
91 1hmj_A RPB5, protein (subunit 43.6 14 0.00049 22.9 2.2 20 23-42 42-61 (78)
92 4ayb_H DNA-directed RNA polyme 42.7 14 0.00047 23.1 2.0 19 24-42 51-69 (84)
93 1eik_A RNA polymerase subunit 42.4 31 0.0011 21.2 3.6 20 23-42 44-63 (77)
94 1g2b_A Spectrin alpha chain; c 41.6 12 0.00039 21.0 1.4 41 1-41 1-51 (62)
95 1grj_A GREA protein; transcrip 40.9 46 0.0016 22.6 4.7 63 21-83 76-143 (158)
96 2nyg_A YOKD protein; PFAM02522 40.8 14 0.00048 27.7 2.2 17 23-39 20-36 (273)
97 1yle_A Arginine N-succinyltran 40.0 17 0.00058 28.3 2.6 22 18-39 317-338 (342)
98 3sma_A FRBF; N-acetyl transfer 39.7 15 0.00051 27.9 2.2 17 23-39 29-45 (286)
99 2jv2_A Putative uncharacterize 38.9 14 0.00049 22.9 1.6 13 87-99 9-21 (83)
100 3l0o_A Transcription terminati 38.9 23 0.00078 28.5 3.2 34 6-39 64-107 (427)
101 1kca_A Repressor protein CI; g 38.7 45 0.0015 20.8 4.1 10 5-14 32-41 (109)
102 3kyd_D Small ubiquitin-related 38.6 8.3 0.00029 25.5 0.5 21 19-39 89-110 (115)
103 2cqa_A RUVB-like 2; TIP48, TIP 38.5 22 0.00077 22.8 2.6 19 23-41 56-74 (95)
104 2i6v_A General secretion pathw 37.7 55 0.0019 19.2 4.2 22 18-39 24-46 (87)
105 1wz0_A Ubiquitin-like protein 36.4 8.7 0.0003 24.6 0.3 18 22-39 77-94 (104)
106 2d07_B Ubiquitin-like protein 35.8 7.8 0.00027 24.1 0.0 21 19-39 66-87 (93)
107 2eke_C Ubiquitin-like protein 34.5 8.4 0.00029 24.9 0.0 17 23-39 84-100 (106)
108 2b1y_A Hypothetical protein AT 34.4 7.2 0.00025 25.6 -0.3 18 3-20 12-30 (104)
109 1zq1_A Glutamyl-tRNA(Gln) amid 33.5 70 0.0024 25.5 5.2 61 22-82 4-68 (438)
110 2k5i_A Iron transport protein; 33.0 60 0.0021 22.2 4.3 99 5-104 5-149 (162)
111 2oyn_A Hypothetical protein MJ 32.7 22 0.00074 24.5 1.9 17 23-39 115-131 (146)
112 2fpe_A C-JUN-amino-terminal ki 32.7 22 0.00077 19.6 1.7 11 28-38 20-30 (62)
113 1zuy_A Myosin-5 isoform; SH3 d 32.3 28 0.00095 18.8 2.0 18 24-41 14-31 (58)
114 3ice_A Transcription terminati 31.7 32 0.0011 27.6 2.9 34 6-39 60-103 (422)
115 2kl0_A Putative thiamin biosyn 31.7 27 0.00093 20.7 2.0 21 19-39 39-59 (73)
116 2lj0_A Sorbin and SH3 domain-c 30.9 20 0.00069 20.7 1.3 21 21-41 16-36 (65)
117 2k52_A Uncharacterized protein 30.7 37 0.0013 20.0 2.6 27 71-98 44-71 (80)
118 2bz8_A SH3-domain kinase bindi 30.2 32 0.0011 18.7 2.1 18 24-41 14-31 (58)
119 2k8h_A Small ubiquitin protein 30.2 8.3 0.00028 25.1 -0.6 19 21-39 78-96 (110)
120 1fx7_A Iron-dependent represso 29.4 57 0.0019 22.8 3.8 36 6-41 157-200 (230)
121 1v1c_A Obscurin; muscle, sarco 29.2 32 0.0011 20.9 2.0 20 23-42 19-38 (71)
122 1qmj_A Beta-galactoside-bindin 28.9 18 0.00061 23.8 0.9 17 25-41 5-21 (132)
123 1cka_A C-CRK N-terminal SH3 do 28.7 35 0.0012 18.3 2.1 19 23-41 13-31 (57)
124 1yn8_A NBP2, NAP1-binding prot 28.5 35 0.0012 18.4 2.0 19 23-41 13-31 (59)
125 1qd7_I S17 ribosomal protein; 28.2 69 0.0023 20.1 3.6 22 72-93 49-70 (89)
126 3dui_A Beta-galactoside-bindin 28.1 19 0.00066 23.7 1.0 17 25-41 8-24 (135)
127 1zx6_A YPR154WP; SH3 domain, p 28.0 36 0.0012 18.4 2.0 19 23-41 14-32 (58)
128 1gcq_C VAV proto-oncogene; SH3 27.9 30 0.001 19.5 1.7 14 27-40 26-39 (70)
129 3j20_R 30S ribosomal protein S 27.8 71 0.0024 21.0 3.7 25 72-96 79-103 (113)
130 3e0e_A Replication protein A; 27.8 43 0.0015 20.6 2.6 15 27-41 61-75 (97)
131 4e6r_A Cytoplasmic protein NCK 27.8 37 0.0013 18.2 2.0 19 23-41 13-31 (58)
132 3tix_A Ubiquitin-like protein 27.6 12 0.00041 27.4 -0.2 19 21-39 108-126 (207)
133 2fhd_A RAD9 homolog, DNA repai 27.6 13 0.00044 25.9 0.0 33 20-53 54-86 (153)
134 3zvk_E VAPB2, antitoxin of tox 27.5 40 0.0014 20.5 2.3 36 59-104 13-48 (78)
135 2a28_A BZZ1 protein; SH3 domai 27.4 32 0.0011 18.3 1.7 14 27-40 16-29 (54)
136 1sem_A SEM-5; SRC-homology 3 ( 27.3 39 0.0013 18.2 2.1 19 23-41 14-32 (58)
137 2fpf_A C-JUN-amino-terminal ki 27.1 31 0.0011 19.6 1.7 12 3-14 22-33 (71)
138 2jte_A CD2-associated protein; 27.1 32 0.0011 19.0 1.7 14 27-40 22-35 (64)
139 2ydl_A SH3 domain-containing k 27.1 31 0.0011 19.8 1.7 13 3-15 18-30 (69)
140 1hlc_A Human lectin; HET: GAL 27.0 14 0.00049 24.2 0.2 17 25-41 4-20 (129)
141 2xmf_A Myosin 1E SH3; motor pr 27.0 39 0.0013 18.4 2.0 19 23-41 17-35 (60)
142 3i18_A LMO2051 protein; alpha- 26.9 58 0.002 19.7 3.0 28 9-39 6-33 (100)
143 3mvn_A UDP-N-acetylmuramate:L- 26.4 32 0.0011 22.9 1.9 14 30-43 136-149 (163)
144 1y0m_A 1-phosphatidylinositol- 26.1 34 0.0012 18.7 1.7 13 27-39 19-31 (61)
145 1udx_A The GTP-binding protein 25.8 40 0.0014 26.4 2.5 19 22-40 389-407 (416)
146 1spk_A RSGI RUH-010, riken cDN 25.8 35 0.0012 19.4 1.7 13 27-39 24-36 (72)
147 1k1z_A VAV; SH3, proto-oncogen 25.8 33 0.0011 19.8 1.7 13 28-40 35-47 (78)
148 1b07_A Protein (proto-oncogene 25.7 29 0.001 19.6 1.4 20 22-41 14-33 (65)
149 1tg0_A BBC1 protein, myosin ta 25.7 41 0.0014 18.9 2.0 20 22-41 18-37 (68)
150 1jo8_A ABP1P, actin binding pr 25.6 36 0.0012 18.4 1.7 14 27-40 16-29 (58)
151 1k4u_S Phagocyte NADPH oxidase 25.5 36 0.0012 18.7 1.8 12 28-39 22-33 (62)
152 2drm_A Acanthamoeba myosin IB; 25.3 41 0.0014 18.1 1.9 19 23-41 15-33 (58)
153 2g6f_X RHO guanine nucleotide 25.2 37 0.0013 18.5 1.7 12 28-39 21-32 (59)
154 2iim_A Proto-oncogene tyrosine 25.1 44 0.0015 18.3 2.1 19 23-41 18-36 (62)
155 1nnx_A Protein YGIW; structura 25.0 53 0.0018 21.3 2.7 38 4-41 32-89 (109)
156 3u23_A CD2-associated protein; 25.0 37 0.0013 18.6 1.7 13 3-15 23-35 (65)
157 2ak5_A RHO guanine nucleotide 24.9 44 0.0015 18.4 2.1 20 22-41 17-36 (64)
158 2x3w_D Syndapin I, protein kin 24.7 38 0.0013 18.3 1.7 14 27-40 19-32 (60)
159 1dgs_A DNA ligase; AMP complex 24.6 46 0.0016 28.1 2.8 19 21-39 358-376 (667)
160 2nwm_A Vinexin; cell adhesion; 24.6 38 0.0013 19.1 1.7 13 3-15 17-29 (65)
161 2bzy_A CRK-like protein, CRKL 24.5 39 0.0013 19.0 1.8 18 24-41 16-33 (67)
162 2gnc_A SLIT-ROBO RHO GTPase-ac 24.5 38 0.0013 18.5 1.7 12 28-39 23-34 (60)
163 2lcs_A NAP1-binding protein 2; 24.4 44 0.0015 19.3 2.0 19 23-41 17-35 (73)
164 2owo_A DNA ligase; protein-DNA 24.3 39 0.0013 28.5 2.4 19 21-39 360-378 (671)
165 3sgi_A DNA ligase; HET: DNA AM 24.3 38 0.0013 28.4 2.2 17 71-87 377-393 (615)
166 3j21_U 50S ribosomal protein L 24.2 70 0.0024 21.2 3.2 50 18-71 29-86 (121)
167 2j6f_A CD2-associated protein; 24.1 25 0.00086 19.4 0.9 18 24-41 14-31 (62)
168 1oot_A Hypothetical 40.4 kDa p 24.1 39 0.0014 18.3 1.7 14 27-40 19-32 (60)
169 4a17_S RPL26, 60S ribosomal pr 24.1 52 0.0018 22.3 2.6 50 18-71 32-89 (135)
170 1tyg_B YJBS; alpha beta barrel 23.9 36 0.0012 21.1 1.6 8 24-31 42-49 (87)
171 2v1q_A SLA1, cytoskeleton asse 23.8 40 0.0014 18.2 1.7 14 27-40 18-31 (60)
172 2kxc_A Brain-specific angiogen 23.7 40 0.0014 18.8 1.7 14 27-40 23-36 (67)
173 1w70_A Neutrophil cytosol fact 23.7 41 0.0014 18.4 1.7 13 28-40 21-33 (60)
174 3ulr_B SRC substrate cortactin 23.7 48 0.0017 18.2 2.1 18 24-41 22-39 (65)
175 2eyx_A V-CRK sarcoma virus CT1 23.7 34 0.0012 19.3 1.4 13 3-15 24-36 (67)
176 2ew3_A SH3-containing GRB2-lik 23.6 40 0.0014 19.2 1.7 14 3-16 19-32 (68)
177 3c0c_A Endophilin-A2; endocyto 23.4 48 0.0016 18.9 2.0 19 23-41 25-43 (73)
178 2d6f_A Glutamyl-tRNA(Gln) amid 23.3 1.3E+02 0.0043 24.0 5.1 56 22-78 8-64 (435)
179 2isb_A Fumarase, FUM-1; NP_069 23.3 63 0.0022 23.2 3.0 21 19-41 22-42 (192)
180 1uti_A GRB2-related adaptor pr 23.3 42 0.0014 18.1 1.7 13 27-39 17-29 (58)
181 1tuc_A Alpha-spectrin; capping 23.2 41 0.0014 18.7 1.7 15 2-16 4-18 (63)
182 2vwf_A Growth factor receptor- 23.2 42 0.0014 18.0 1.7 14 27-40 18-31 (58)
183 2ebp_A SAM and SH3 domain-cont 23.1 42 0.0014 19.3 1.8 13 3-15 27-39 (73)
184 1uhc_A KIAA1010 protein; beta 23.1 41 0.0014 19.5 1.7 12 3-14 29-40 (79)
185 2dl7_A KIAA0769 protein; SH3 d 23.0 41 0.0014 19.1 1.7 13 28-40 25-37 (73)
186 2j05_A RAS GTPase-activating p 22.9 43 0.0015 18.6 1.7 12 3-14 22-33 (65)
187 1x2k_A OSTF1, osteoclast stimu 22.9 53 0.0018 18.4 2.1 19 23-41 19-37 (68)
188 1wyx_A CRK-associated substrat 22.9 42 0.0014 18.8 1.7 14 27-40 19-32 (69)
189 3ngp_A Spectrin alpha chain, b 22.9 52 0.0018 17.8 2.1 20 22-41 17-36 (62)
190 4f14_A Nebulette; SH3 domain, 22.7 52 0.0018 17.9 2.0 19 23-41 18-36 (64)
191 1zuu_A BZZ1 protein; SH3 domai 22.6 39 0.0013 18.2 1.5 14 27-40 17-30 (58)
192 3flo_A DNA polymerase alpha su 22.6 17 0.00057 29.4 -0.2 25 18-42 85-109 (460)
193 2xzm_Q Ribosomal protein S17 c 22.6 90 0.0031 21.7 3.6 27 70-96 113-139 (157)
194 2o9s_A Ponsin; SH3 domain, sig 22.6 43 0.0015 18.7 1.7 14 27-40 22-35 (67)
195 2dmo_A Neutrophil cytosol fact 22.6 43 0.0015 18.8 1.7 13 3-15 23-35 (68)
196 2ke9_A Caskin-2; SH3 domain, A 22.5 42 0.0014 20.0 1.7 13 27-39 35-47 (83)
197 1zlm_A Osteoclast stimulating 22.5 50 0.0017 17.8 1.9 19 23-41 15-33 (58)
198 2k9g_A SH3 domain-containing k 22.5 43 0.0015 19.0 1.7 14 27-40 25-38 (73)
199 2dl8_A SLIT-ROBO RHO GTPase-ac 22.4 43 0.0015 19.0 1.7 21 21-41 19-39 (72)
200 2csi_A RIM-BP2, RIM binding pr 22.4 34 0.0012 19.8 1.2 17 25-41 28-44 (76)
201 2dl4_A Protein STAC; SH3 domai 22.3 45 0.0015 18.8 1.7 14 27-40 23-36 (68)
202 2dl3_A Sorbin and SH3 domain-c 22.2 45 0.0015 18.6 1.7 12 3-14 23-34 (68)
203 2kxd_A 11-MER peptide, SH3 dom 22.1 44 0.0015 19.1 1.7 14 2-15 14-27 (73)
204 1ruw_A Myosin-3 isoform, MYO3; 22.1 45 0.0015 18.7 1.7 13 27-39 19-31 (69)
205 2i0n_A Class VII unconventiona 22.0 37 0.0013 19.9 1.3 15 2-16 25-39 (80)
206 2vkn_A Protein SSU81; membrane 22.0 42 0.0014 19.0 1.6 15 26-40 22-36 (70)
207 1uj0_A Signal transducing adap 21.8 46 0.0016 18.3 1.7 12 28-39 22-33 (62)
208 3sgi_A DNA ligase; HET: DNA AM 21.8 35 0.0012 28.5 1.6 17 23-39 372-388 (615)
209 2k2m_A EPS8-like protein 1; al 21.8 46 0.0016 18.7 1.7 14 27-40 24-37 (68)
210 2ed1_A 130 kDa phosphatidylino 21.7 47 0.0016 19.1 1.8 13 27-39 26-38 (76)
211 3eg3_A Proto-oncogene tyrosine 21.6 54 0.0019 17.8 2.0 19 23-41 17-35 (63)
212 3h0h_A Proto-oncogene tyrosine 21.6 55 0.0019 18.4 2.1 19 23-41 27-45 (73)
213 3pge_A SUMO-modified prolifera 21.6 20 0.00067 25.8 0.0 18 22-39 81-98 (200)
214 2p19_A Transcriptional regulat 21.6 1.3E+02 0.0044 18.8 4.1 36 2-37 2-37 (149)
215 2djq_A SH3 domain containing r 21.6 46 0.0016 18.6 1.7 12 3-14 23-34 (68)
216 2oaw_A Spectrin alpha chain, b 21.5 47 0.0016 18.2 1.7 14 27-40 17-30 (65)
217 2ed0_A ABL interactor 2; coile 21.5 46 0.0016 19.3 1.7 13 3-15 33-45 (78)
218 4gop_B Putative uncharacterize 21.4 1.2E+02 0.004 19.6 3.9 30 13-42 65-97 (136)
219 1wi5_A RRP5 protein homolog; S 21.4 1E+02 0.0034 19.4 3.5 31 71-102 66-97 (119)
220 2jt4_A Cytoskeleton assembly c 21.3 47 0.0016 18.6 1.7 14 27-40 22-35 (71)
221 4glm_A Dynamin-binding protein 21.2 57 0.0019 18.2 2.0 19 23-41 25-43 (72)
222 1ue9_A Intersectin 2; beta bar 21.2 48 0.0016 19.2 1.7 13 27-39 23-35 (80)
223 2d8j_A FYN-related kinase; SH3 21.1 42 0.0014 19.2 1.5 14 27-40 23-36 (77)
224 2cuc_A SH3 domain containing r 21.1 48 0.0016 18.5 1.7 13 27-39 23-35 (70)
225 2cre_A HEF-like protein; SH3 d 21.1 44 0.0015 18.8 1.5 13 28-40 24-36 (71)
226 3o5z_A Phosphatidylinositol 3- 21.1 46 0.0016 20.0 1.7 14 2-15 26-39 (90)
227 2dbk_A CRK-like protein; struc 21.1 47 0.0016 19.8 1.7 14 2-15 33-46 (88)
228 4esr_A Jouberin; AHI-1, AHI1, 21.1 57 0.002 18.2 2.0 19 23-41 18-36 (69)
229 2b86_A Cytoplasmic protein NCK 20.9 58 0.002 18.6 2.1 19 23-41 16-34 (67)
230 1uff_A Intersectin 2; beta bar 20.9 46 0.0016 20.0 1.7 13 2-14 20-32 (93)
231 2e5k_A Suppressor of T-cell re 20.9 47 0.0016 19.9 1.7 14 27-40 32-45 (94)
232 2cal_A Rusticyanin; iron respi 20.9 42 0.0014 22.5 1.6 33 7-39 32-74 (154)
233 2da9_A SH3-domain kinase bindi 20.9 41 0.0014 18.9 1.4 14 27-40 23-36 (70)
234 1w1f_A Tyrosine-protein kinase 20.9 49 0.0017 18.2 1.7 13 28-40 24-36 (65)
235 1x2p_A Protein arginine N-meth 20.9 50 0.0017 18.4 1.7 14 27-40 23-36 (68)
236 4glx_A DNA ligase; inhibitor, 20.9 43 0.0015 27.8 1.9 19 21-39 360-378 (586)
237 3v2d_V 50S ribosomal protein L 20.9 65 0.0022 20.6 2.4 21 73-94 14-34 (101)
238 3rnj_A Brain-specific angiogen 20.8 50 0.0017 18.4 1.7 14 27-40 24-37 (67)
239 2fei_A CD2-associated protein; 20.8 37 0.0013 19.2 1.1 12 28-39 18-29 (65)
240 2i4s_A General secretion pathw 20.7 74 0.0025 19.3 2.6 22 18-39 42-64 (105)
241 2ct3_A Vinexin; SH3 domian, st 20.5 42 0.0014 18.8 1.3 12 3-14 23-34 (70)
242 1x43_A Endophilin B1, SH3 doma 20.3 51 0.0017 19.2 1.7 13 28-40 34-46 (81)
243 2egc_A SH3 and PX domain-conta 20.3 50 0.0017 19.0 1.7 12 28-39 26-37 (75)
244 1ujy_A RHO guanine nucleotide 20.2 45 0.0015 19.1 1.4 12 3-14 26-37 (76)
245 1uhf_A Intersectin 2; beta bar 20.1 52 0.0018 18.5 1.7 13 3-15 24-36 (69)
246 2rf0_A Mitogen-activated prote 20.1 50 0.0017 20.0 1.7 14 27-40 45-58 (89)
247 2yuo_A CIP85, RUN and TBC1 dom 20.1 51 0.0018 19.0 1.7 13 3-15 23-35 (78)
248 3cqt_A P59-FYN, proto-oncogene 20.1 51 0.0017 19.3 1.7 12 3-14 21-32 (79)
249 2pjh_A Protein NPL4, nuclear p 20.0 30 0.001 20.8 0.6 17 23-39 62-78 (80)
No 1
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.97 E-value=6.8e-31 Score=195.75 Aligned_cols=93 Identities=71% Similarity=1.191 Sum_probs=89.4
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEE
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIH 94 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~ 94 (107)
||+|||||+.|++||+++||+|+|+|+|++.|+|++|++++++.+.||||+.+|+|||+++||.|+|+++.++++|++|+
T Consensus 39 rgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~ 118 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIH 118 (211)
T ss_dssp TTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBCSEEE
T ss_pred CcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986899999999
Q ss_pred EccCCccccCCCC
Q psy3865 95 VLPIDDSVQGLTG 107 (107)
Q Consensus 95 l~P~~dti~~~~g 107 (107)
|+|+++++++++|
T Consensus 119 LaP~~~~i~~i~~ 131 (211)
T 3qwz_A 119 VLPIDDTVEGITG 131 (211)
T ss_dssp EEEBGGGCTTCCS
T ss_pred EeccCcchhccCc
Confidence 9999999887654
No 2
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.97 E-value=5.8e-31 Score=193.00 Aligned_cols=93 Identities=72% Similarity=1.205 Sum_probs=85.6
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEE
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIH 94 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~ 94 (107)
+|+|||||+.|++||+++||+|+|+|+|++.|+|++|++++++.+.||||+.+|+|||+++||.|+|+++.++++|++|+
T Consensus 36 ~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~ 115 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIH 115 (187)
T ss_dssp TTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEECSEEE
T ss_pred CcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999977899999999
Q ss_pred EccCCccccCCCC
Q psy3865 95 VLPIDDSVQGLTG 107 (107)
Q Consensus 95 l~P~~dti~~~~g 107 (107)
|+|+++++++++|
T Consensus 116 LaP~~~~i~~i~~ 128 (187)
T 3tiw_A 116 VLPIDDTVEGITG 128 (187)
T ss_dssp EEECCCC-----C
T ss_pred Eeccccchhhccc
Confidence 9999999887653
No 3
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.93 E-value=3.7e-26 Score=166.86 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=79.4
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccC--CCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccE
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSD--DTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKR 92 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~--~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~ 92 (107)
||+|||||+.|++||+++||+|+|+|+| .|+|++|+. ++++.++||||+.+|+|+|+++||.|+|+++ ++++|++
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~-~~~~A~~ 97 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKV-RTEIAKK 97 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEE-CCCBCSE
T ss_pred CCEEEECHHHHHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEEC-CCCCccE
Confidence 6899999999999999999999999998 477777764 7899999999999999999999999999996 9999999
Q ss_pred EEEccCC---cccc
Q psy3865 93 IHVLPID---DSVQ 103 (107)
Q Consensus 93 V~l~P~~---dti~ 103 (107)
|+|+|++ ++++
T Consensus 98 V~l~P~~~~~~~~~ 111 (185)
T 1cz4_A 98 VTLAPIIRKDQRLK 111 (185)
T ss_dssp EEEEEECSTTCCSC
T ss_pred EEEecccccccccc
Confidence 9999996 6664
No 4
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=6.7e-24 Score=180.72 Aligned_cols=92 Identities=73% Similarity=1.217 Sum_probs=87.9
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEE
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHV 95 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l 95 (107)
|+|||+|+.|++||+++||+|+|+|+|++.|+|++|++++++.+.||||+.+|+|+|+++||.|+|+++.++++|++|+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 116 (806)
T 1ypw_A 37 SVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116 (806)
T ss_dssp SCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEE
T ss_pred CEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEE
Confidence 99999999999999999999999999988899999999999999999999999999999999999999878999999999
Q ss_pred ccCCccccCCCC
Q psy3865 96 LPIDDSVQGLTG 107 (107)
Q Consensus 96 ~P~~dti~~~~g 107 (107)
+|+++++.+++|
T Consensus 117 ~~~~~~~~~~~~ 128 (806)
T 1ypw_A 117 LPIDDTVEGITG 128 (806)
T ss_dssp EECTTTSSSCCS
T ss_pred eCCccchhhccc
Confidence 999999987654
No 5
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.90 E-value=1.3e-23 Score=171.02 Aligned_cols=91 Identities=73% Similarity=1.206 Sum_probs=87.9
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEE
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHV 95 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l 95 (107)
|+|||||+.|++||+++||+|+|+|+++++|+|.+|++++++.+.||||+.+|+|+|+++||.|+|+++.++++|++|+|
T Consensus 37 ~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~ 116 (489)
T 3hu3_A 37 SVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116 (489)
T ss_dssp TEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEE
T ss_pred CEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccCCccccCCC
Q psy3865 96 LPIDDSVQGLT 106 (107)
Q Consensus 96 ~P~~dti~~~~ 106 (107)
+|++++++.+.
T Consensus 117 ~~~~~av~a~~ 127 (489)
T 3hu3_A 117 LPIDDTVEGIT 127 (489)
T ss_dssp EEBGGGSSSCC
T ss_pred cCCCccccccc
Confidence 99999998763
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=1e-21 Score=168.25 Aligned_cols=93 Identities=72% Similarity=1.205 Sum_probs=88.9
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEE
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIH 94 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~ 94 (107)
+++|||+|++|++||+++||+|+|+|++++.++|+++++++++.+.|+||+.+|+|+|+++||.|+|+++.++++|++|+
T Consensus 36 ~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~ 115 (806)
T 3cf2_A 36 NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIH 115 (806)
T ss_dssp TTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCSBEE
T ss_pred CCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EccCCccccCCCC
Q psy3865 95 VLPIDDSVQGLTG 107 (107)
Q Consensus 95 l~P~~dti~~~~g 107 (107)
|+|++++++++++
T Consensus 116 l~p~~~~~~~~~~ 128 (806)
T 3cf2_A 116 VLPIDDTVEGITG 128 (806)
T ss_dssp EEEBTTTSTTCCS
T ss_pred Eeccccchhccch
Confidence 9999999987753
No 7
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.84 E-value=6.4e-21 Score=138.47 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=73.7
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccC--C--CCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCc
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSD--D--TCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYG 90 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~--~--d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a 90 (107)
+|+|||+++.|++|++.+||+|+|+|+++ |++++|+. + +++.+.|+||+.+|+|+|+++||.|+|+++.++++|
T Consensus 24 ~~~vrL~~~~~~~L~~~~gd~VeI~g~~~--t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~~~~A 101 (179)
T 1wlf_A 24 DCFLHLPRRLVAQLHLLQNQAIEVASDHQ--PTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSC 101 (179)
T ss_dssp SSCEEECHHHHHHTTCCTTCCEEEESSSC--CEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSCCEEC
T ss_pred CcEEECCHHHHHHcCCCCCcEEEEEeCCe--eEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCCCccc
Confidence 58999999999999999999999999884 66666655 4 678999999999999999999999999996799999
Q ss_pred cEEEEccCC
Q psy3865 91 KRIHVLPID 99 (107)
Q Consensus 91 ~~V~l~P~~ 99 (107)
++|+|+|.+
T Consensus 102 ~~V~laP~~ 110 (179)
T 1wlf_A 102 QQVEVEPLS 110 (179)
T ss_dssp SEEEEEESS
T ss_pred eEEEEEcCC
Confidence 999999995
No 8
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=98.42 E-value=3.3e-07 Score=66.72 Aligned_cols=81 Identities=31% Similarity=0.479 Sum_probs=58.7
Q ss_pred CcccCcccCCeEEEeE-------------------EEecCHHHHhhCCCCCCCEEEEEec---cCCcEEEEeccCCCCCC
Q psy3865 1 MDELNLFRGDTVLLRG-------------------KRRKESAKMDELNLFRGDTVLLRGK---RRKESVCIVLSDDTCPD 58 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rG-------------------iari~~~~m~~Lgl~~GD~V~I~Gk---r~~~tvai~~~~~d~~~ 58 (107)
|++||||.||+|.|+| +.|||...++++|+..||.|.|+-- +..+.|.+++.+++...
T Consensus 46 m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~ 125 (187)
T 3tiw_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (187)
T ss_dssp HHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC---
T ss_pred HHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhh
Confidence 7899999999999987 4578889999999999999999832 34456777776554321
Q ss_pred CeEE---EeHhhhhccc-----ccCCCeEEEEe
Q psy3865 59 EKIR---MNRVMRNNLR-----VRLSDVVSLVP 83 (107)
Q Consensus 59 ~~Ir---id~~~R~N~~-----v~igD~V~V~~ 83 (107)
+. .+..++.++. +.-||.+.|.-
T Consensus 126 --i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~ 156 (187)
T 3tiw_A 126 --ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156 (187)
T ss_dssp ----CCHHHHTHHHHHTTTCCEEETTCEEEEEC
T ss_pred --ccchhHHHHHHHHhccCCceeeCCCEEEEcc
Confidence 11 1244566653 67899999873
No 9
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=98.32 E-value=4.1e-07 Score=67.35 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=58.2
Q ss_pred CcccCcccCCeEEEeEE-------------------EecCHHHHhhCCCCCCCEEEEEec---cCCcEEEEeccCCCCCC
Q psy3865 1 MDELNLFRGDTVLLRGK-------------------RRKESAKMDELNLFRGDTVLLRGK---RRKESVCIVLSDDTCPD 58 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rGi-------------------ari~~~~m~~Lgl~~GD~V~I~Gk---r~~~tvai~~~~~d~~~ 58 (107)
|++||||.||+|.|+|. +|||...+++||+..||.|.|+-- +.++.|.+++.+++...
T Consensus 49 m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~ 128 (211)
T 3qwz_A 49 MDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 128 (211)
T ss_dssp HHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTT
T ss_pred HHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhc
Confidence 78999999999999875 477889999999999999999832 34566777776544321
Q ss_pred -CeEEEeHhhhhccc-----ccCCCeEEEE
Q psy3865 59 -EKIRMNRVMRNNLR-----VRLSDVVSLV 82 (107)
Q Consensus 59 -~~Irid~~~R~N~~-----v~igD~V~V~ 82 (107)
..=..+..++..+. +.-||.|.|.
T Consensus 129 i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~ 158 (211)
T 3qwz_A 129 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVR 158 (211)
T ss_dssp CCSCHHHHTTHHHHTTCCEEEETTCEEECC
T ss_pred cCchhHHHHHHHHHhhCCceeecCCEEEEc
Confidence 00001344565553 6779988765
No 10
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=97.88 E-value=2.4e-05 Score=56.55 Aligned_cols=53 Identities=21% Similarity=0.121 Sum_probs=43.2
Q ss_pred CcccCcccCCeEEEeE-------------------EEecCHHHHhhCCCCCCCEEEEEe--ccCCcEEEEeccC
Q psy3865 1 MDELNLFRGDTVLLRG-------------------KRRKESAKMDELNLFRGDTVLLRG--KRRKESVCIVLSD 53 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rG-------------------iari~~~~m~~Lgl~~GD~V~I~G--kr~~~tvai~~~~ 53 (107)
|++|+||.||+|.|+| +.|||...++++|+..||.|.|+= -+..+.+.+++..
T Consensus 31 m~~Lgl~~GD~V~I~G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~A~~V~l~P~~ 104 (185)
T 1cz4_A 31 RRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEIAKKVTLAPII 104 (185)
T ss_dssp HHTTCCCTTCEEEEESSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCBCSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEEcCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCCccEEEEeccc
Confidence 6899999999998876 667788999999999999999993 2444567766664
No 11
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=97.17 E-value=0.00049 Score=44.67 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=51.9
Q ss_pred EEEeEEEecCHHHHhhCCCCCCCEEEEEe-----ccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEe
Q psy3865 12 VLLRGKRRKESAKMDELNLFRGDTVLLRG-----KRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 12 ~~~rGiari~~~~m~~Lgl~~GD~V~I~G-----kr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~ 83 (107)
|.-+|-+-|..+.++.||+..||.|.++- ..+....+.+- --..+.|.|...+|+.+|+..||.+.+..
T Consensus 11 v~~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~---v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 11 VHRIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTAR---VGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp CBGGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEE---CCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred EeCCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEE---ECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 44577888999999999999999999942 11011122211 12569999999999999999999999875
No 12
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=0.0018 Score=55.26 Aligned_cols=83 Identities=29% Similarity=0.429 Sum_probs=56.1
Q ss_pred CcccCcccCCeEEEeEE-------------------EecCHHHHhhCCCCCCCEEEEEec---cCCcEEEEeccCCCCCC
Q psy3865 1 MDELNLFRGDTVLLRGK-------------------RRKESAKMDELNLFRGDTVLLRGK---RRKESVCIVLSDDTCPD 58 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rGi-------------------ari~~~~m~~Lgl~~GD~V~I~Gk---r~~~tvai~~~~~d~~~ 58 (107)
|++||||+||+|.|+|. +|||...+.++|+..||.|.|+-- +..+.|.++++.++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (806)
T 1ypw_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (806)
T ss_dssp HHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSS
T ss_pred HHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhh
Confidence 67999999999999874 456668889999999999999743 23455777776554321
Q ss_pred -CeEEEeHhhhhcc---c--ccCCCeEEEEe
Q psy3865 59 -EKIRMNRVMRNNL---R--VRLSDVVSLVP 83 (107)
Q Consensus 59 -~~Irid~~~R~N~---~--v~igD~V~V~~ 83 (107)
.--..+..++... + +..||.+.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 156 (806)
T 1ypw_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156 (806)
T ss_dssp CCSCCTTTTTGGGTTTTCCBCCTTCEEEECC
T ss_pred cccchHHHHHHHHhccCCccccCCCEEEecC
Confidence 0000122344433 2 77899888764
No 13
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.0014 Score=45.25 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHh
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRV 66 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~ 66 (107)
..+.|+|+++++|||..||.|.|+..+. +..+.+. .+.+..+.|.|..-
T Consensus 53 ~~v~inp~dA~~lGI~dGd~V~V~s~~G-~v~~~a~-t~~i~~g~V~~p~g 101 (146)
T 2ki8_A 53 NYAEINEEDWNALGLQEGDRVKVKTEFG-EVVVFAK-KGDVPKGMIFIPMG 101 (146)
T ss_dssp SEEEECHHHHHHHTCCTTCEEEEECSSC-EEEEEEE-ECSCCTTEEEEESS
T ss_pred CEEEECHHHHHHcCCCCCCEEEEEeCCc-EEEEEEe-CCCcCCCEEEEECC
Confidence 4588999999999999999999997775 4556677 88899999998763
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.79 E-value=0.00096 Score=54.04 Aligned_cols=53 Identities=38% Similarity=0.604 Sum_probs=40.6
Q ss_pred CcccCcccCCeEEEeEE-------------------EecCHHHHhhCCCCCCCEEEEE---eccCCcEEEEeccC
Q psy3865 1 MDELNLFRGDTVLLRGK-------------------RRKESAKMDELNLFRGDTVLLR---GKRRKESVCIVLSD 53 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rGi-------------------ari~~~~m~~Lgl~~GD~V~I~---Gkr~~~tvai~~~~ 53 (107)
|++||||.||+|.|+|. +|||...++++|+..||.|.|+ .-+..+.|.+.+.+
T Consensus 46 ~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~ 120 (489)
T 3hu3_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID 120 (489)
T ss_dssp HHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBG
T ss_pred HHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCC
Confidence 67999999999999883 4556688889999999999996 22334456666543
No 15
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=96.74 E-value=0.0016 Score=46.64 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=42.5
Q ss_pred CcccCcccCCeEEEeE---------------------EEecCHHHHhhCCCCCCCEEEEEe---ccCCcEEEEeccC
Q psy3865 1 MDELNLFRGDTVLLRG---------------------KRRKESAKMDELNLFRGDTVLLRG---KRRKESVCIVLSD 53 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rG---------------------iari~~~~m~~Lgl~~GD~V~I~G---kr~~~tvai~~~~ 53 (107)
|.+|++++||.|.|+| +.|||...++++|+..||.|.|+= -+.+++|.+++..
T Consensus 34 ~~~L~~~~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~~~~A~~V~laP~~ 110 (179)
T 1wlf_A 34 VAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLS 110 (179)
T ss_dssp HHHTTCCTTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSCCEECSEEEEEESS
T ss_pred HHHcCCCCCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCCCccceEEEEEcCC
Confidence 5689999999999975 677888999999999999999982 2345667776653
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.69 E-value=0.0018 Score=55.77 Aligned_cols=82 Identities=29% Similarity=0.428 Sum_probs=53.6
Q ss_pred CcccCcccCCeEEEeEE-------------------EecCHHHHhhCCCCCCCEEEEEec---cCCcEEEEeccCCCCCC
Q psy3865 1 MDELNLFRGDTVLLRGK-------------------RRKESAKMDELNLFRGDTVLLRGK---RRKESVCIVLSDDTCPD 58 (107)
Q Consensus 1 ~~~~~~~~~d~~~~rGi-------------------ari~~~~m~~Lgl~~GD~V~I~Gk---r~~~tvai~~~~~d~~~ 58 (107)
|++||||.||+|.|+|. ++||.-.++++|+..||.|.|+-- +..+.+.+++..+....
T Consensus 46 ~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~ 125 (806)
T 3cf2_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (806)
T ss_dssp HHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTT
T ss_pred HHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhc
Confidence 78999999999999864 455668888999999999999832 33455666665543221
Q ss_pred -CeEEEeHhhhhc-----ccccCCCeEEEE
Q psy3865 59 -EKIRMNRVMRNN-----LRVRLSDVVSLV 82 (107)
Q Consensus 59 -~~Irid~~~R~N-----~~v~igD~V~V~ 82 (107)
..--.....+.. --+..||.+.|.
T Consensus 126 ~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~ 155 (806)
T 3cf2_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVR 155 (806)
T ss_dssp CCSCHHHHTHHHHHTTTCCEEETTCEEEEC
T ss_pred cchhHHHHHHHHHHHhcCCcccCCCEEEEe
Confidence 110112223322 236678888875
No 17
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.03 Score=40.75 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=61.9
Q ss_pred EEecCHHHHhh---CCCCCCCEEEEEeccC-CcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccE
Q psy3865 17 KRRKESAKMDE---LNLFRGDTVLLRGKRR-KESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKR 92 (107)
Q Consensus 17 iari~~~~m~~---Lgl~~GD~V~I~Gkr~-~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~ 92 (107)
++-|.|.++++ +++..==+-+|+..+. +.|.|-+.. -+-+.|.|-|..-+.+||++.-||.|.|+-+ .+|.|+.
T Consensus 42 KI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~LPkgt~ 119 (190)
T 2yuj_A 42 KIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVESV-NLQVATY 119 (190)
T ss_dssp EEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CCCCCSE
T ss_pred eEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ecCCCcE
Confidence 35567877664 4444445667776432 246665532 3446789999999999999999999999986 9999999
Q ss_pred EEEccCCccc
Q psy3865 93 IHVLPIDDSV 102 (107)
Q Consensus 93 V~l~P~~dti 102 (107)
|.|.|-+..+
T Consensus 120 vklqP~~~~F 129 (190)
T 2yuj_A 120 SKFQPQSPDF 129 (190)
T ss_dssp EEEEESSHHH
T ss_pred EEEEECCccc
Confidence 9999976543
No 18
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=95.95 E-value=0.012 Score=42.21 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=47.3
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
.+++||.+.. .+-+|+|.| .-|..+-+++.+++|.|-+++..|+-+++++||.|.|++.
T Consensus 23 ~~~vsp~Df~-----~~~~v~v~~----~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~V~~y 81 (189)
T 1cr5_A 23 VAAVSPNDFP-----NNIYIIIDN----LFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQAKAF 81 (189)
T ss_dssp EEEECTTTSC-----SSCEEEETT----TEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEEEEC
T ss_pred eEEECHHHcC-----CCceEEEcC----cEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEEEEEe
Confidence 4667776654 224888843 2365566788999999999999999999999999999997
No 19
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.048 Score=40.17 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=60.9
Q ss_pred EEecCHHHHhhC---CCCCCCEEEEEecc-CCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccE
Q psy3865 17 KRRKESAKMDEL---NLFRGDTVLLRGKR-RKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKR 92 (107)
Q Consensus 17 iari~~~~m~~L---gl~~GD~V~I~Gkr-~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~ 92 (107)
++-|.|.++++| ++..==+-+|+... .+.|.|-+.. -+-+.|.|-|..-+.+||++.-||.|.|+-+ +.|.|+.
T Consensus 47 KIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~-~LPkgt~ 124 (208)
T 1zc1_A 47 KIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISST-DVPLGQF 124 (208)
T ss_dssp EEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEEE-ECCCCSE
T ss_pred eEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEEe-EcCCCCE
Confidence 455677666644 44444455666432 2356665532 2346689999999999999999999999986 9999999
Q ss_pred EEEccCCccc
Q psy3865 93 IHVLPIDDSV 102 (107)
Q Consensus 93 V~l~P~~dti 102 (107)
|.|.|-+..+
T Consensus 125 vklqP~~~~F 134 (208)
T 1zc1_A 125 VKLEPQSVDF 134 (208)
T ss_dssp EEEECCHHHH
T ss_pred EEEeECcccc
Confidence 9999965443
No 20
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=95.49 E-value=0.057 Score=36.34 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=50.7
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
|..-||++-|+.-|+.+++-|.|- |.|. +|.++.. ..+.+.|.++|..=+= +..||.|.|-..
T Consensus 27 GSitID~~Ll~aA~i~~~E~V~I~NvnNG~Rf-~TYvI~G---erGSg~I~lNGAAAr~--~~~GD~vII~ay 93 (114)
T 3oug_A 27 GSITIDSEIMKQANIIENEKVQVVNLNNGERL-ETYVIKG---EPNSKTIALNGPAARR--CEIGDQLFIISY 93 (114)
T ss_dssp -CEEEEHHHHHHTTCCTTBEEEEEETTTCCEE-EEEEEEE---CTTSCCEEEEGGGGGG--CCTTCEEEEEEE
T ss_pred ceEEECHHHHHHcCCCcCCEEEEEECCCCceE-EEEEEEc---cCCCCEEEeCCHHHhc--cCCCCEEEEEEC
Confidence 456689999999999999999999 6666 8888865 4577999999976443 678999998643
No 21
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=95.33 E-value=0.046 Score=35.81 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=49.3
Q ss_pred ecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 19 RKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
-||++-|+.-|+.+++-|.|- |.|. +|+++.. ..+.+.|.++|..=+ .+..||.|.|-..
T Consensus 3 tID~dLl~aa~i~~~E~V~IvNvnNG~Rf-~TYvI~G---erGSG~I~lNGAAAr--l~~~GD~vII~aY 66 (96)
T 1vc3_B 3 TVDQDLLDAAGILPFEQVDIYDITNGARL-TTYALPG---ERGSGVIGINGAAAH--LVKPGDLVILVAY 66 (96)
T ss_dssp EEEHHHHHHHTCCTTCEEEEEETTTCCEE-EEECEEE---CTTTTCEEEEGGGGG--TCCTTCEEEEEEE
T ss_pred eeCHHHHHHcCCCCCCEEEEEECCCCceE-EEEEEEc---cCCCCeEEEchHHHc--cCCCCCEEEEEEC
Confidence 478999999999999999999 6665 8888865 557899999997644 3678999998754
No 22
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=95.28 E-value=0.044 Score=39.88 Aligned_cols=62 Identities=6% Similarity=0.112 Sum_probs=47.4
Q ss_pred EEecCHHHHhhCCCCCCCEEEEE-eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLR-GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~-Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
.|+++|.+.. .+.+|.++ |.. ..-|..+-+++.+++|.|-+++..|+-+++++||.|.|++.
T Consensus 25 ~~~vsp~Df~-----~~~~v~v~~~~~-~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V~~y 87 (211)
T 1qcs_A 25 CAVVSEKDYQ-----SGQHVIVRTSPN-HKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEVALY 87 (211)
T ss_dssp CEEECTTTCC-----TTCEEEEEEETT-EEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEEEEE
T ss_pred eEEECHHHcC-----CCceEEEEecCC-CeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEEEEe
Confidence 4566676653 44567774 421 13455566788999999999999999999999999999987
No 23
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=95.07 E-value=0.038 Score=36.55 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=48.1
Q ss_pred ecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 19 RKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
-||++-|+.-|+.+++-|.|- |.|. +|+++.. + +.+.|.++|..=+ .+..||.|.|-..
T Consensus 3 tID~dLl~aA~i~~~E~V~I~NvnNG~Rf-~TYvI~G--e--GSG~I~lNGAAAr--l~~~GD~vII~aY 65 (102)
T 3plx_B 3 SIDEKLLQASGILEYEKVQVVNVNNGARF-ETYTIAT--Q--EEGVVCLNGAAAR--LAEVGDKVIIMSY 65 (102)
T ss_dssp EEEHHHHHHHTCCTTCEEEEEETTTCCEE-EEECEEE--S--STTCEEEEGGGGG--GCCTTCEEEEEEE
T ss_pred eeCHHHHHHcCCCCCCEEEEEECCCCcEE-EEEEEEc--C--CCCEEEeCcHHHh--ccCCCCEEEEEEc
Confidence 478999999999999999999 6665 7887754 3 8899999997644 3688999998754
No 24
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=95.06 E-value=0.059 Score=37.55 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=51.2
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
|..-||++-|+.-|+.+++-|.|- |.|. +|+++.. ..+.+.|.+||..=+ .+..||.|.|-..
T Consensus 41 GSITID~dLldaAgIl~~EkV~IvNvnNG~Rf-eTYvI~G---erGSG~I~lNGAAAr--l~~~GD~VII~sY 107 (143)
T 1pqh_A 41 GTCAIDQDFLDAAGILENEAIDIWNVTNGKRF-STYAIAA---ERGSRIISVNGAAAH--CASVGDIVIIASF 107 (143)
T ss_dssp CCEEEEHHHHHHHTCCTTCEEEEEETTTCCEE-EEEEEEE---CTTCCCEECCGGGGG--TCCTTCEEEEEEE
T ss_pred eeEEECHHHHHHcCCCCCCEEEEEECCCCceE-EEEEEEc---cCCCceEEechHHHc--cCCCCCEEEEEEC
Confidence 445679999999999999999999 6666 8888866 457899999997644 3678999998654
No 25
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=95.04 E-value=0.034 Score=46.73 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=40.0
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEe
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMN 64 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid 64 (107)
.+.|+|++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|.
T Consensus 668 ~v~inp~dA~~lGI~dGD~V~V~s~~G-~v~~~a~vt~~i~pG~V~~~ 714 (780)
T 1eu1_A 668 PCLINPADAAARGIADGDVLRVFNDRG-QILVGAKVSDAVMPGAIQIY 714 (780)
T ss_dssp EEEECHHHHHTTTCCTTCEEEEECSSC-EEEEEEEECTTBCTTEEECC
T ss_pred eEEECHHHHHHcCCCCCCEEEEEcCCc-eEEEEEEeCCCCCCCeEEec
Confidence 488999999999999999999997765 45566777788889999886
No 26
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=94.97 E-value=0.039 Score=46.67 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=39.8
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEe
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMN 64 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid 64 (107)
.+.|||++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|.
T Consensus 708 ~v~Inp~dA~~lGI~dGD~V~V~s~~G-~i~~~a~vt~~i~pG~V~~~ 754 (829)
T 1tmo_A 708 PVYISPVDAKARGIKDGDIVRVFNDRG-QLLAGAVVSDNFPKGIVRIH 754 (829)
T ss_dssp EEEECHHHHHHTTCCTTCEEEEECSSC-EEEEEEEECTTSCTTEEECC
T ss_pred eEEECHHHHHHcCCCCCCEEEEEcCCc-eEEEEEEECCCcCCCeEEec
Confidence 488999999999999999999997765 55566777788889999883
No 27
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=94.96 E-value=0.052 Score=45.55 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=41.0
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEE--EeccCCCCCCCeEEEeHh
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVC--IVLSDDTCPDEKIRMNRV 66 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tva--i~~~~~d~~~~~Irid~~ 66 (107)
.+.|+|++.++|||..||.|+|+..+. +..+ .+...+.+.++.|.|..-
T Consensus 648 ~v~inp~dA~~lGI~~Gd~V~v~s~~G-~v~~~~~a~vt~~i~pg~V~~~~g 698 (765)
T 2vpz_A 648 EVWIHKEEAKRLGLKEGDYVMLVNQDG-VKEGPVRVKPTARIRKDCVYIVHG 698 (765)
T ss_dssp EEECCHHHHHHTTCCTTCEEEEEETTC-CEEEEEEEECCSSBCTTEEEEESS
T ss_pred eEEECHHHHHHcCCCCCCEEEEEcCCC-eEEEEEEEEEcCCccCCEEEEecC
Confidence 588999999999999999999998765 4445 666778888999998754
No 28
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=94.90 E-value=0.04 Score=45.84 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=41.0
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
..+.|+|++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|..
T Consensus 625 ~~v~inp~dA~~lGI~~Gd~V~v~s~~G-~~~~~a~vt~~i~pg~V~~~~ 673 (727)
T 2e7z_A 625 PVALLHPKTAQSLGLPSGEWIWVETTHG-RLKLLLKHDGAQPEGTIRIPH 673 (727)
T ss_dssp CEEEECHHHHHHHTCCTTSEEEEECSSC-EEEEEEEECTTSCTTEEEECS
T ss_pred CeEEECHHHHHHcCCCCCCEEEEEcCCc-eEEEEEEECCCcCCCEEEEec
Confidence 3588999999999999999999997765 455667777888899998864
No 29
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=94.78 E-value=0.071 Score=45.25 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=49.3
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
..++|||+++++||+..||.|.|+..+. +..+.+..++..+.+.|.|.. .+---++.+.-+.+
T Consensus 714 ~~~~i~p~~a~~lgi~~Gd~V~v~~~~g-~v~~~~~v~~~~~~g~v~~p~-----~~~~~~~~~~~~~~ 776 (783)
T 3i9v_3 714 AELWAHPETARAEALPEGAQVAVETPFG-RVEARVVHREDVPKGHLYLSA-----LGPAAGLRVEGRVL 776 (783)
T ss_dssp CEEEECHHHHHHTTCCTTCEEEEEETTE-EEEEEEEECTTSCTTCEEEEE-----CSSCCSCEECCEEC
T ss_pred hhhccCHHHHHHcCCCCCCEEEEEeCCe-EEEEEEEEcCCCCCCEEEEec-----cchhhhccCcccee
Confidence 4689999999999999999999998775 334445567889999999997 55555666655543
No 30
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=94.75 E-value=0.049 Score=46.17 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=40.8
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
.+.|||++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|..
T Consensus 727 ~v~InP~dA~~lGI~~GD~V~V~s~~G-~v~~~a~vt~~i~pG~V~~~~ 774 (825)
T 1g8k_A 727 YIEMNPDDCKQLDVTGGDIVEVYNDFG-STFAMVYPVAEIKRGQTFMLF 774 (825)
T ss_dssp EEEECHHHHHHTTCCTTEEEEEECSSC-EEEEEEEECTTSCTTEEEEEC
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCc-eEEEEEEECCCCCCCeEEEec
Confidence 578999999999999999999997765 455667777888999998875
No 31
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=94.52 E-value=0.042 Score=45.72 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=40.3
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
..+.|+|++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|..
T Consensus 606 ~~v~inp~dA~~lGI~~Gd~V~v~s~~G-~v~~~a~vt~~i~pg~V~~~~ 654 (715)
T 2iv2_X 606 GYAQINTEDAKRLGIEDEALVWVHSRKG-KIITRAQVSDRPNKGAIYMTY 654 (715)
T ss_dssp CEEEEEHHHHHHHTCCTTCEEEEECSSC-EEEEEEEEESSSCTTEEEECC
T ss_pred cEEEECHHHHHHhCCCCCCEEEEEeCCc-eEEEEEEECCCcCCCeEEEec
Confidence 3688999999999999999999997765 445556667788889999863
No 32
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=94.47 E-value=0.078 Score=36.80 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=52.1
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCC
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCP 85 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~ 85 (107)
|..-||++-|+.-|+.+++-|.|- |.|. +|+++.. ..+.+.|.++|..=+ .+..||.|.|-...
T Consensus 24 GSITID~dLldaAgIl~~EkV~IvNvnNG~Rf-eTYvI~G---erGSG~I~lNGAAAr--l~~~GD~vII~aYa 91 (139)
T 2c45_A 24 GSVTIDADLMDAADLLEGEQVTIVDIDNGARL-VTYAITG---ERGSGVIGINGAAAH--LVHPGDLVILIAYA 91 (139)
T ss_dssp CEEEEEHHHHHHTTCCSSCCEEEEETTTCCEE-EECEEEE---CTTTTCEEEESSTTT--TSCTTCEEEEEECC
T ss_pred eeeEECHHHHHHcCCCCCCEEEEEECCCCceE-EEEEEEc---cCCCCEEEEchHHHc--cCCCCCEEEEEECC
Confidence 556789999999999999999999 6665 8888865 557899999996543 26789999987654
No 33
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=94.32 E-value=0.04 Score=45.77 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=39.2
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
.+.|+|++.++|||..||.|+|+..+. +..+.+...+.+..+.|.|..
T Consensus 642 ~v~inp~dA~~lGI~~GD~V~v~s~~G-~v~~~a~vt~~i~pg~V~~~~ 689 (723)
T 2nap_A 642 FVEINEEDAARTGIKHGDSVIVETRRD-AMELPARVSDVCRPGLIAVPF 689 (723)
T ss_dssp CEEEEHHHHHHHTCCTTCEEEEEETTE-EEEEEEEEESSBCTTEEEEEC
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCc-eEEEEEEECCCcCCCeEEEec
Confidence 578999999999999999999997765 444556666788889988854
No 34
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=94.02 E-value=0.05 Score=46.40 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
-.+.|+|++.++|||..||.|+|+..+. +..+.+...+.+.++.|.|..
T Consensus 770 ~~v~InP~dA~~lGI~dGD~V~V~s~~G-~i~~~a~vt~~i~pgvV~~~~ 818 (875)
T 1ti6_A 770 WIMRVNSIDAEARGIKNGDLIRAYNDRG-SVILAAQVTECLQPGTVHSYE 818 (875)
T ss_dssp EEEEEEHHHHHHTTCCTTCEEEEEETTE-EEEEEEEEESSBCTTEEECCS
T ss_pred ceEEECHHHHHHhCCCCCCEEEEEcCCc-eEEEEEEecCCccCCEEEEec
Confidence 4589999999999999999999997765 455666677788888888875
No 35
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=93.96 E-value=0.092 Score=45.11 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=41.1
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
.+.|+|+++++|||..||.|+|...+. +..+.+...+.+..+.|.|..
T Consensus 745 ~v~InP~DA~~lGI~~Gd~V~v~s~rG-~v~~~a~vt~~i~~G~v~~p~ 792 (845)
T 4aay_A 745 FIEMNPEDMAEAGLKEGDLVEIYNDAG-ATQAMAYPTPTARRGETFMLF 792 (845)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEECSSC-EEEEEEEECTTSCTTEEEEEC
T ss_pred EEEECHHHHHHhCCCCCCEEEEEcCCe-eEEEEEEECCCCCCCEEEEec
Confidence 578999999999999999999997765 556667778889999999875
No 36
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=93.89 E-value=0.19 Score=32.91 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=48.1
Q ss_pred ecCHHHHhhCCCCCCCEEEEE----eccCCcEEEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEeCC
Q psy3865 19 RKESAKMDELNLFRGDTVLLR----GKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVPCP 85 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~----Gkr~~~tvai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~~~ 85 (107)
-||++-|+.-|+.+++-|.|- |.|. +|+++... . .+.|.++|..=+= +..||.|.|-...
T Consensus 2 tID~dLldaA~il~~E~V~IvNvnNG~Rf-eTYvI~Ge---r-SG~I~lNGAAArl--~~~GD~vII~aY~ 65 (97)
T 1uhe_A 2 TIDEDLAKLAKLREGMKVEIVDVNNGERF-STYVILGK---K-RGEICVNGAAARK--VAIGDVVIILAYA 65 (97)
T ss_dssp EEEHHHHHHTTCCTTCEEEEEETTTCCEE-EEECEEEC---S-TTCEEEEGGGGGG--CCTTCEEEEEEEE
T ss_pred eeCHHHHHhcCCCCCCEEEEEECCCCceE-EEEEEeec---c-CCeEEEchHHHcc--CCCCCEEEEEECc
Confidence 368999999999999999999 6666 88888653 2 6999999976443 6789999987543
No 37
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=93.82 E-value=0.11 Score=30.76 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=33.3
Q ss_pred CCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEEccCCc
Q psy3865 57 PDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHVLPIDD 100 (107)
Q Consensus 57 ~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~P~~d 100 (107)
.++.|.|.+.+|+.+++..||.|.+..- + .+|.|.|.+.
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~l~i~~~-~----~~IiL~p~~p 58 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDALEIYVD-D----EKIILKKYKP 58 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCEEEEEEE-T----TEEEEEECCC
T ss_pred CCCEEEeCHHHHHHcCCCCCCEEEEEEE-C----CEEEEEECCC
Confidence 5699999999999999999999999863 2 4699988754
No 38
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=93.62 E-value=0.064 Score=34.49 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=30.6
Q ss_pred cccCcccCCeEEEeE---------------------EEecCHHHHhhCCCCCCCEEEEE
Q psy3865 2 DELNLFRGDTVLLRG---------------------KRRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 2 ~~~~~~~~d~~~~rG---------------------iari~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.|||-.||.|.++- -.-|..+.++.||+.+||.+++.
T Consensus 25 ~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIPkeiR~~lgi~~Gd~l~~~ 83 (92)
T 2glw_A 25 KFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIPKALRDVIGIKPGEVIEVL 83 (92)
T ss_dssp HHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECCHHHHHHHTCCTTCEEEEE
T ss_pred HHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECcHHHHHHcCCCCCCEEEEE
Confidence 458899999999943 23346699999999999999886
No 39
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=93.52 E-value=0.079 Score=45.90 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=41.1
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEeH
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNR 65 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid~ 65 (107)
.+.|||++.++|||..||.|+|...+. +..+.+...+.+.++.|.|..
T Consensus 873 ~v~Inp~DA~~lGI~dGD~V~V~n~~G-~v~~~a~vt~~i~pG~V~~~~ 920 (976)
T 2ivf_A 873 VVHMNSKDAAELGIKDGDMAKLFNDFA-DCEIMVRTAPNVQPKQCIVYF 920 (976)
T ss_dssp EEEEEHHHHHHTTCCTTCEEEEECSSC-EEEEEEEEETTSCTTEEECCC
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCC-eEEEEEEECCCCCCCeEEEee
Confidence 678999999999999999999997665 556677777888999998876
No 40
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=93.38 E-value=0.14 Score=43.65 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=38.7
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccC--CCCCCCeEEEeH
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSD--DTCPDEKIRMNR 65 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~--~d~~~~~Irid~ 65 (107)
.+.|+|+++++|||..||.|+|...+. +..+.+... +.+..+.|.|.-
T Consensus 719 ~v~i~p~dA~~lGi~~Gd~V~v~s~rG-~v~~~a~vt~~~~~~~G~vf~p~ 768 (802)
T 3ml1_A 719 VVFMHPEDAKALGLRRGVEVEVVSRRG-RMRSRIETRGRDAPPRGLVFVPW 768 (802)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEECSSC-EEEEEEESSSSCBCCTTEEEEES
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCc-eEEEEEEECCCCCcCCCEEEEeC
Confidence 578999999999999999999997775 555555544 467789998874
No 41
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=92.74 E-value=0.29 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.7
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEecc
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr 42 (107)
+|-..|..+.+++||+.+||.|++.-..
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEEEEEEET
T ss_pred CCEEEeCHHHHHHcCCCCCCEEEEEEEC
Confidence 5778899999999999999999998544
No 42
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=91.50 E-value=0.16 Score=45.64 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=37.5
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCCCeEEEe
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMN 64 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~~~Irid 64 (107)
.+.|+|++.+++||..||.|+|...+. +..+.+...+.+.+|.|.|.
T Consensus 1117 ~V~InP~DA~~~GI~dGD~V~V~N~rG-~v~~rA~Vt~ri~pGvV~m~ 1163 (1247)
T 1q16_A 1117 VVWLSEADAKDLGIADNDWIEVFNSNG-ALTARAVVSQRVPAGMTMMY 1163 (1247)
T ss_dssp EEEEEHHHHHHHTCCTTCEEEEEETTE-EEEEEEEEETTSCTTEEECC
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCe-EEEEEEEECCCCCCCEEEEe
Confidence 578999999999999999999996654 55666666667777777753
No 43
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=91.39 E-value=0.12 Score=29.57 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=23.6
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEecc
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr 42 (107)
+|-..|..+.+++||+.+||.+++.-..
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCEEEEEECS
T ss_pred CCEEEeCHHHHHHcCcCCCCEEEEEEEC
Confidence 4667788899999999999999998443
No 44
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=91.39 E-value=0.33 Score=42.24 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=34.2
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCC
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPD 58 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~ 58 (107)
.+.|||++.++|||..||.|+|+..+. +..+.+...+.+.+
T Consensus 919 ~v~Inp~dA~~~GI~~GD~V~V~s~rG-~i~~~a~vt~~i~p 959 (1015)
T 1kqf_A 919 FVEISETLAAAKGINNGDRVTVSSKRG-FIRAVAVVTRRLKP 959 (1015)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEECSSC-EEEEEEEECTTSCC
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCc-eEEEEEEEcCCcCc
Confidence 367999999999999999999997765 56667777777777
No 45
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=91.27 E-value=0.34 Score=42.02 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=37.3
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCCCCC--------CeEEEe
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPD--------EKIRMN 64 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d~~~--------~~Irid 64 (107)
.+.|+|++.++|||..||.|.|...+. +..+.+...+.+.+ +.|.|.
T Consensus 881 ~veInp~dA~~lGI~~GD~V~V~s~rG-~i~~~a~vt~~i~pg~v~~~~~g~v~~p 935 (977)
T 1h0h_A 881 FCEMSEELATLRGIKNGDKVILESVRG-KLWAKAIITKRIKPFAIQGQQVHMVGIP 935 (977)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEEETTE-EEEEEEEECTTCCCEEETTEEECEEEEE
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCC-CEEEEEEEecCcCCccccCcccCEEEEe
Confidence 467999999999999999999997765 55566666777777 555665
No 46
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=90.94 E-value=0.14 Score=37.67 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=52.5
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEecc-CCcEEEEeccCC----CCCCCeEEEeHhhhhcccccCCCeEEEEe
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGKR-RKESVCIVLSDD----TCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gkr-~~~tvai~~~~~----d~~~~~Irid~~~R~N~~v~igD~V~V~~ 83 (107)
.|.+.+++--|++|++.+||.|.|+..+ -+-|.+.+.|.+ +...-...+....|+-.-+..||++.|.-
T Consensus 91 EG~v~lP~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I~i~~ 164 (208)
T 1zc1_A 91 EGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISY 164 (208)
T ss_dssp SCEEEECHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEEEEEE
T ss_pred CCeEEcCHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEEEEEe
Confidence 3778899999999999999999999641 112334444431 56666667888999999999999999874
No 47
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.77 E-value=0.092 Score=38.13 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=51.0
Q ss_pred EEEecCHHHHhhCCCCCCCEEEEEecc-CCcEEEEeccCC----CCCCCeEEEeHhhhhcccccCCCeEEEEe
Q psy3865 16 GKRRKESAKMDELNLFRGDTVLLRGKR-RKESVCIVLSDD----TCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 16 Giari~~~~m~~Lgl~~GD~V~I~Gkr-~~~tvai~~~~~----d~~~~~Irid~~~R~N~~v~igD~V~V~~ 83 (107)
|.+.|++--|++|++.+||.|.|+..+ -+-|.+.+.|.+ +...-.-.+-...|+-.-+..||++.|.-
T Consensus 87 G~i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I~~ 159 (190)
T 2yuj_A 87 GICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINY 159 (190)
T ss_dssp TBEECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEEES
T ss_pred CeEEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEEEe
Confidence 678899999999999999999999641 112333443331 45555566788999999999999999874
No 48
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=90.46 E-value=0.72 Score=30.20 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=42.7
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEeccCCcE--EEEeccCCCCCCCeEEEeHhhhhcccccCCCeEEEEe
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKRRKES--VCIVLSDDTCPDEKIRMNRVMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr~~~t--vai~~~~~d~~~~~Irid~~~R~N~~v~igD~V~V~~ 83 (107)
.+.+..+..+.+| +-.|.++|.=...+ -.+.+.. -+...+-++..+|+.+|...||.|.|.-
T Consensus 38 fV~vP~~i~e~~G---~G~v~V~~tI~g~~~~tsL~p~g--~G~~~Lpvk~~vRka~g~~~GD~V~V~L 101 (104)
T 2d9r_A 38 YVEIPFDVKTVYG---KGRVRVNATFDGYPYTGYIVRMG--LPCHILGLRQDIRRAIGKQPGDSVYVTL 101 (104)
T ss_dssp EEECCSCHHHHHC---SSCEEEEEEETTEEEEEEEEESS--TTCEEEEECHHHHHHHTCCTTSEEEEEE
T ss_pred EEEeChHHHHhcC---CCceEEEEEECCEEEEEEEEECC--CCcEEEEecHHHHHHcCCCCCCEEEEEE
Confidence 4667777778888 45667775311111 1222222 3678999999999999999999999874
No 49
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=88.24 E-value=0.8 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.9
Q ss_pred CeEEEeHhhhh-cccccCCCeEEEEeC
Q psy3865 59 EKIRMNRVMRN-NLRVRLSDVVSLVPC 84 (107)
Q Consensus 59 ~~Irid~~~R~-N~~v~igD~V~V~~~ 84 (107)
-..++.|-+|+ ...+..||.|.|+.-
T Consensus 39 ~~c~i~GK~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 39 VLAHISGKMRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp EEEEECHHHHHTTCCCCTTCEEEEEEE
T ss_pred EEEEeCcceecCCccCCCCCEEEEEEC
Confidence 37889999998 789999999999874
No 50
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=87.91 E-value=0.63 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=23.6
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEec
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
.+-++|..+.+++||+.+||.|+|.=.
T Consensus 12 s~~v~iPk~~~~~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLV 38 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEE
T ss_pred ccEEEECHHHHHHcCCCCCCEEEEEEE
Confidence 366899999999999999999999743
No 51
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=85.24 E-value=0.97 Score=27.63 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=30.3
Q ss_pred CeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEEccCCc
Q psy3865 59 EKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHVLPIDD 100 (107)
Q Consensus 59 ~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~P~~d 100 (107)
..|+|.+.+|+.+++..||.|.|+.- ..++.|.|...
T Consensus 13 ~~v~iPk~~~~~lgl~~gd~v~i~~~-----~~~iii~p~~~ 49 (82)
T 1mvf_D 13 PAVRIPATLMQALNLNIDDEVKIDLV-----DGKLIIEPVRK 49 (82)
T ss_dssp EEEECCHHHHHHTTCCTTCBEEEEEE-----TTEEEEEEC--
T ss_pred cEEEECHHHHHHcCCCCCCEEEEEEE-----CCEEEEEECCC
Confidence 68999999999999999999999863 24688888753
No 52
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=83.96 E-value=0.65 Score=26.40 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEEccC
Q psy3865 57 PDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHVLPI 98 (107)
Q Consensus 57 ~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~P~ 98 (107)
..+.|.|...+|+.+|+..||.|.+.-- + ..+.|.|.
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~v~i~~~-~----~~ivl~p~ 46 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDLVKVTFD-E----SEGVVKIQ 46 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCEEEEEEC-S----SSCCEEEE
T ss_pred CCCEEEeCHHHHHHcCcCCCCEEEEEEE-C----CEEEEEEC
Confidence 4689999999999999999999999863 2 23666664
No 53
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=82.39 E-value=0.064 Score=33.40 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.0
Q ss_pred cCHHHHhhCCCCCCCEEEEE
Q psy3865 20 KESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 20 i~~~~m~~Lgl~~GD~V~I~ 39 (107)
|+++.+++||++.||++.|.
T Consensus 39 l~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 39 INNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp CCHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHcCCchhhHHHHH
Confidence 68899999999999999875
No 54
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=80.25 E-value=1.5 Score=29.59 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.5
Q ss_pred EecCHHHHhhCCCCCCCEEEEE
Q psy3865 18 RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
++++|..+++.+++.||+|+.+
T Consensus 79 iyVs~~~irrf~lr~GD~V~g~ 100 (130)
T 1a62_A 79 IYVSPSQIRRFNLRTGDTISGK 100 (130)
T ss_dssp EEECHHHHHHTTCCTTCEEEEE
T ss_pred EEECHHHHhHhCCCCCCEEEEE
Confidence 4678899999999999999876
No 55
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=74.46 E-value=4.6 Score=28.78 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEEccCCc
Q psy3865 57 PDEKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHVLPIDD 100 (107)
Q Consensus 57 ~~~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~P~~d 100 (107)
.++.|.|.+.+|+.+|+..||.|.+..- . . -.|.|.|.+.
T Consensus 12 ~kGqItIPkeiR~~LgI~~GD~l~~~~~-~--d-G~Iil~~~~~ 51 (178)
T 2w1t_A 12 DLGRVVIPKEIRRTLRIREGDPLEIFVD-R--D-GDVILKKYSP 51 (178)
T ss_dssp TTSEEECCHHHHHHTTCCTTCEEEEEEC-T--T-SCEEEEECCH
T ss_pred CCceEEEcHHHHHHcCcCCCCEEEEEEe-C--C-CEEEEEECCc
Confidence 4689999999999999999999999963 2 1 2488877654
No 56
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=73.12 E-value=3.1 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.7
Q ss_pred EecCHHHHhhCCCCCCCEEEEEecc
Q psy3865 18 RRKESAKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~Gkr 42 (107)
++++++..++|++.+|+.|...=|.
T Consensus 37 a~it~~s~~~l~L~~G~~V~a~ika 61 (68)
T 1gut_A 37 SIISLDSVEELGVKEGAELTAVVKS 61 (68)
T ss_dssp EEEEHHHHHHHTCCTTCEEEEECCG
T ss_pred EEeCHHHHHHCCCCCCCEEEEEEec
Confidence 8889999999999999999876443
No 57
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=70.66 E-value=1.7 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.0
Q ss_pred ecCH-HHHhhCCCCCCCEEEEEe
Q psy3865 19 RKES-AKMDELNLFRGDTVLLRG 40 (107)
Q Consensus 19 ri~~-~~m~~Lgl~~GD~V~I~G 40 (107)
+|++ +..++|++..||++.+.|
T Consensus 57 ~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 57 KLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp ECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EcCCCCCHHHcCCCCCCEEEEeC
Confidence 3444 588899999999998764
No 58
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=68.59 E-value=4 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.8
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEEec
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
||-+-|..+.++.||+.+||.|++.-.
T Consensus 13 kGqItIPkeiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 13 LGRVVIPKEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp TSEEECCHHHHHHTTCCTTCEEEEEEC
T ss_pred CceEEEcHHHHHHcCcCCCCEEEEEEe
Confidence 577888999999999999999999843
No 59
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=67.84 E-value=5.5 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.9
Q ss_pred cCcccCCeEEEeEEEe-cCHH---HHhhCCCCCCCEEEEEec
Q psy3865 4 LNLFRGDTVLLRGKRR-KESA---KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 4 ~~~~~~d~~~~rGiar-i~~~---~m~~Lgl~~GD~V~I~Gk 41 (107)
+++-.|+.+.|.++.- .+++ .+.+||+.+|..|++..+
T Consensus 1 ~~l~~G~~~~I~~i~~~~~~~~~~rL~~lGl~pG~~v~v~~~ 42 (75)
T 2gcx_A 1 MQFTPDSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRV 42 (75)
T ss_dssp CCCCTTSEEEEECCCSSCCHHHHHHHTTTTCCSSEEEEECCC
T ss_pred CCCCCCCEEEEEEEeCCCCHHHHHHHHHCCCCCCCEEEEEEe
Confidence 3577899999987764 4564 566999999999999764
No 60
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=65.96 E-value=3.1 Score=27.07 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.1
Q ss_pred CeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 59 EKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 59 ~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
-..+|.+-+|+++.+..||.|.|.+-
T Consensus 45 ~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 45 RLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp EEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred EEEEEcccceeeEEecCCCEEEEEec
Confidence 45678999999999999999999974
No 61
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=65.64 E-value=6.4 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=33.5
Q ss_pred EEEEeccCCCCCCCeEEEeH----------hhhhcccccCCCeEEEEeCCCCCCccEEEEc
Q psy3865 46 SVCIVLSDDTCPDEKIRMNR----------VMRNNLRVRLSDVVSLVPCPGIVYGKRIHVL 96 (107)
Q Consensus 46 tvai~~~~~d~~~~~Irid~----------~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~ 96 (107)
.++.+..++..+...+-.|+ .+++|+|+.+||.|+|-. |+-+.+.+.
T Consensus 83 Vv~~i~~e~~vP~~f~~vD~~g~c~avsVYNl~~~~G~~iGDsV~Ipe----P~v~~v~i~ 139 (166)
T 2xvs_A 83 VVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPE----PNLRLHRIQ 139 (166)
T ss_dssp EEEEECCTTCCSEEEEEESSSSCCEEEEECCCCSSCCCCTTCEEEEES----CEEEEEEEE
T ss_pred EEEEecCCCCCceEEEEECCCCCEEEEEEEeccCCcceEecCEEEeCC----CcEEEEecc
Confidence 36666666666666666665 689999999999999974 344555554
No 62
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=65.42 E-value=5.4 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=27.2
Q ss_pred CeEEEeHhhhhcccccCCCeEEEEeCC-CCCCccEEEE
Q psy3865 59 EKIRMNRVMRNNLRVRLSDVVSLVPCP-GIVYGKRIHV 95 (107)
Q Consensus 59 ~~Irid~~~R~N~~v~igD~V~V~~~~-~~~~a~~V~l 95 (107)
-..+|.+-+|+++.+..||.|.|.+-+ +...|..+..
T Consensus 56 ~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r 93 (143)
T 1d7q_A 56 RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILK 93 (143)
T ss_dssp EEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEE
T ss_pred EEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEE
Confidence 456789999999999999999999742 2233444443
No 63
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=63.34 E-value=11 Score=24.69 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=29.2
Q ss_pred CeEEEeHhhhhcccccCCCeEEEEeCC-CCCCccEEEEcc
Q psy3865 59 EKIRMNRVMRNNLRVRLSDVVSLVPCP-GIVYGKRIHVLP 97 (107)
Q Consensus 59 ~~Irid~~~R~N~~v~igD~V~V~~~~-~~~~a~~V~l~P 97 (107)
-..+|.+-+|+++.+..||.|.|++-+ +...|..+.+.|
T Consensus 57 ~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 57 RLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp EEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECC
T ss_pred EEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEec
Confidence 457899999999999999999999741 223455555555
No 64
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=63.34 E-value=14 Score=22.48 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=30.4
Q ss_pred cCcccCCeEEEeEEEec-CHH---HHhhCCCCCCCEEEEEec
Q psy3865 4 LNLFRGDTVLLRGKRRK-ESA---KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 4 ~~~~~~d~~~~rGiari-~~~---~m~~Lgl~~GD~V~I~Gk 41 (107)
|.|-.|+.+.|.++.-- +++ .+.+||+.+|-.|++..+
T Consensus 1 m~l~~G~~~~I~~i~~~~~~~~~rrL~~mGl~pG~~V~Vi~~ 42 (83)
T 2lx9_A 1 MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRV 42 (83)
T ss_dssp CCSCSSCEEEEEECCSSSCHHHHHHHHHSSCCSSSEEEEEEE
T ss_pred CccCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEe
Confidence 46778999999888764 554 566999999999999754
No 65
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=62.24 E-value=16 Score=24.26 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=44.8
Q ss_pred CHHHHhhCCCCCCCEEEEEec--cCCcEEEEeccCC-CCCCCeEEEeH-hhhhcccccCCCeEEEEe
Q psy3865 21 ESAKMDELNLFRGDTVLLRGK--RRKESVCIVLSDD-TCPDEKIRMNR-VMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~Gk--r~~~tvai~~~~~-d~~~~~Irid~-~~R~N~~v~igD~V~V~~ 83 (107)
++..+..=-+.-|-+|.++.- ....++-++.+.+ +...+.|-++. ..|.=+|-+.||.|++..
T Consensus 45 ~~~~~~~~~V~~Gs~V~l~~~~~g~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlGk~~GD~v~v~~ 111 (136)
T 3bmb_A 45 SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 (136)
T ss_dssp CGGGCCTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTTEEETTSHHHHHHTTCBTTCEEEEEE
T ss_pred CCccCCCCEEEeCcEEEEEECCCCCEEEEEEEChHHcCccccEecCCCHHHHHHcCCCCCCEEEEEc
Confidence 444444444788999999852 2235777776554 55567776655 788899999999999995
No 66
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=61.85 E-value=5.9 Score=22.22 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.4
Q ss_pred EEecCHHHHhhCCCCCCCEEEEEecc
Q psy3865 17 KRRKESAKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 17 iari~~~~m~~Lgl~~GD~V~I~Gkr 42 (107)
.|.++++..++|++.+|+.|.+.=|.
T Consensus 35 ~a~it~~s~~~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 35 VAAITIDSVADLDLVPGDKVTALVKA 60 (67)
T ss_dssp EEEEEHHHHHHHTCCTTCEEEEEECG
T ss_pred EEEeCHHHHHhCCCCCCCEEEEEEec
Confidence 46678899999999999999876443
No 67
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=61.81 E-value=6.9 Score=23.80 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.1
Q ss_pred EecCHHHHhhCCCCCCCEEEEE
Q psy3865 18 RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
..+..+..+.||+..||.+++.
T Consensus 27 InIPaeI~kaLgIk~gD~fel~ 48 (68)
T 3o27_A 27 LLIPKDIAEALDIKPDDTFILN 48 (68)
T ss_dssp EEECHHHHHHTTCCTTCCEEEE
T ss_pred EeCcHHHHHHhCCCCCCEEEEE
Confidence 3467799999999999999987
No 68
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=61.49 E-value=13 Score=21.64 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=28.9
Q ss_pred CcccCCeEEEeEEEe-cCH---HHHhhCCCCCCCEEEEEec
Q psy3865 5 NLFRGDTVLLRGKRR-KES---AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 5 ~~~~~d~~~~rGiar-i~~---~~m~~Lgl~~GD~V~I~Gk 41 (107)
.+-.|+.+.|..+.- .++ ..+.+||+.+|..|++..+
T Consensus 3 ~l~~G~~~~I~~i~~~~~~~~~~rL~~lGl~~G~~v~v~~~ 43 (75)
T 2h3j_A 3 ALQPSRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRI 43 (75)
T ss_dssp CSSCCCEEEEEEECTTCCTTHHHHHHHHTCCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEEeCCCCHHHHHHHHHcCCCCCCEEEEEEE
Confidence 355799999987764 355 4667999999999999765
No 69
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=60.80 E-value=2.3 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCCEEEEEe
Q psy3865 23 AKMDELNLFRGDTVLLRG 40 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~G 40 (107)
+.-++|++..||+|.+.|
T Consensus 80 ~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 80 ELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCHHHHTCCTTEEEEEEC
T ss_pred CCHHHcCCCCCCEEEEeC
Confidence 677899999999998764
No 70
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=59.56 E-value=3.3 Score=24.45 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.1
Q ss_pred HHHhhCCCCCCCEEEE
Q psy3865 23 AKMDELNLFRGDTVLL 38 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I 38 (107)
+..++|++..||++.+
T Consensus 55 ~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 55 DTPAQLEMEDEDTIDV 70 (72)
T ss_dssp CCTTTTTCCTTEEEEE
T ss_pred CCHHHcCCCCCCEEEE
Confidence 4677888888888765
No 71
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=59.37 E-value=17 Score=24.32 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=45.1
Q ss_pred CHHHHhhCCCCCCCEEEEEec--cCCcEEEEeccCC-CCCCCeEEEeH-hhhhcccccCCCeEEEEe
Q psy3865 21 ESAKMDELNLFRGDTVLLRGK--RRKESVCIVLSDD-TCPDEKIRMNR-VMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~Gk--r~~~tvai~~~~~-d~~~~~Irid~-~~R~N~~v~igD~V~V~~ 83 (107)
++..+..=-+.-|-+|.++.. ....++-++.+.+ +...+.|-+.. ..|.=+|-+.||.|++..
T Consensus 48 ~~~~~~~~~V~~Gs~V~l~d~~~g~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlGk~vGD~v~v~~ 114 (141)
T 2pn0_A 48 DPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPK 114 (141)
T ss_dssp CGGGSCTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCSSSCEEETTSTTHHHHTTCBTTCEEEEEC
T ss_pred CCccCCCCEEEeCcEEEEEECCCCCEEEEEEECHhHcCccCCEEcCCCHHHHHHcCCCCCCEEEEEc
Confidence 444444445888999999852 3335777776654 55567776655 778889999999999984
No 72
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=59.05 E-value=15 Score=22.10 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=30.1
Q ss_pred CcccCCeEEEeEEE--ecCH---HHHhhCCCCCCCEEEEEecc
Q psy3865 5 NLFRGDTVLLRGKR--RKES---AKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 5 ~~~~~d~~~~rGia--ri~~---~~m~~Lgl~~GD~V~I~Gkr 42 (107)
.+-.|+.+.|..+. .-++ ..+.+||+.+|..|++..+.
T Consensus 6 ~l~~G~~~~I~~i~~~~~~~~~~~rL~~lGl~pG~~v~V~~~~ 48 (85)
T 3mhx_A 6 ELPLHTSAVVESVQDLHANDAIARRLRELGFVKGEEVRMVAKG 48 (85)
T ss_dssp GCCTTEEEEEEEECCSSSSCHHHHHHHHTTCCTTCEEEEEESC
T ss_pred HCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEeC
Confidence 46689999999885 4455 45679999999999998653
No 73
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=58.13 E-value=13 Score=22.31 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.8
Q ss_pred CcccCCeEEEeEEEecCH---HHHhhCCCCCCCEEEEEec
Q psy3865 5 NLFRGDTVLLRGKRRKES---AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 5 ~~~~~d~~~~rGiari~~---~~m~~Lgl~~GD~V~I~Gk 41 (107)
++-.|+.+.|.++.- ++ ..+.+||+.+|..|++..+
T Consensus 6 ~l~~G~~~~I~~i~~-~~~~~~rL~~lGl~pG~~v~V~~~ 44 (81)
T 2k5l_A 6 DAKCGQTVKVVKLHG-TGALKRRIMDMGITRGCEIYIRKV 44 (81)
T ss_dssp GSCTTCEEEEEEECS-SSHHHHHHHHHTCCTTCEEEEEEE
T ss_pred HCCCcCEEEEEEEEC-CHHHHHHHHHCCCCCCCEEEEEEe
Confidence 455799999988865 55 4566999999999999765
No 74
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=56.92 E-value=13 Score=22.60 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=28.9
Q ss_pred CcccCCeEEEeEEEecCH---HHHhhCCCCCCCEEEEEec
Q psy3865 5 NLFRGDTVLLRGKRRKES---AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 5 ~~~~~d~~~~rGiari~~---~~m~~Lgl~~GD~V~I~Gk 41 (107)
.+-.|+.+.|.++.. ++ ..+.+||+.+|..|++..+
T Consensus 9 ~l~~G~~~~I~~i~~-~~~~~~rL~~mGl~pG~~V~V~~~ 47 (86)
T 2k4y_A 9 EVEIKSKVKVIGIVP-ESKVRRKIMDMGIVRGTEIYIEGK 47 (86)
T ss_dssp GCCTTCEEEEEEECT-TSSHHHHHHHHTCCTTCEEEEEEE
T ss_pred HCCCCCEEEEEEEEC-CHHHHHHHHHCCCCCCCEEEEEEe
Confidence 466799999998863 55 4667999999999999764
No 75
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=55.60 E-value=5.5 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=19.4
Q ss_pred cccCCeEEEeEEEecCH-HHHhhCCCCCCCEEEE
Q psy3865 6 LFRGDTVLLRGKRRKES-AKMDELNLFRGDTVLL 38 (107)
Q Consensus 6 ~~~~d~~~~rGiari~~-~~m~~Lgl~~GD~V~I 38 (107)
+|+|| |++| ...++|++..||.|.+
T Consensus 54 lFDGd--------RLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 54 EFEGE--------WLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EETTE--------ECCTTSBGGGSSCCTTCEEEE
T ss_pred EEcCc--------ccCccCChhhhCCcCCceeee
Confidence 57776 5666 5678999999999875
No 76
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=53.53 E-value=24 Score=22.45 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.3
Q ss_pred CcccCCeEEEeEEEecCHH---HHhhCCCCCCCEEEEEec
Q psy3865 5 NLFRGDTVLLRGKRRKESA---KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 5 ~~~~~d~~~~rGiari~~~---~m~~Lgl~~GD~V~I~Gk 41 (107)
++-.|+.+.|..+.- +++ .+.+||+.+|..|++..+
T Consensus 5 ~l~~G~~~~I~~I~~-~~~l~rrL~~lGl~pG~~V~Vv~~ 43 (105)
T 2k5f_A 5 ELKAGDRAEVTSVAA-EPAVRRRLMDLGLVRGAKLKVLRF 43 (105)
T ss_dssp GSCTTCEEEEEEECS-CHHHHHHHHHHTCSTTCEEEEEEE
T ss_pred HCCCCCEEEEEEEEC-CHHHHHHHHHcCCCCCCEEEEEEE
Confidence 566799999988765 664 566999999999999765
No 77
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.42 E-value=7.1 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCeEEEeHhhhhcccccCCCeEEEEeC
Q psy3865 58 DEKIRMNRVMRNNLRVRLSDVVSLVPC 84 (107)
Q Consensus 58 ~~~Irid~~~R~N~~v~igD~V~V~~~ 84 (107)
.-..+|.+-+|+++.+..||+|.|.+.
T Consensus 39 ~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 39 RFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EEEEEechhhcccEEEcCCCEEEEEec
Confidence 356788999999999999999999975
No 78
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=52.77 E-value=12 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.5
Q ss_pred CeEEEeHhhhh-cccccCCCeEEEEeC
Q psy3865 59 EKIRMNRVMRN-NLRVRLSDVVSLVPC 84 (107)
Q Consensus 59 ~~Irid~~~R~-N~~v~igD~V~V~~~ 84 (107)
-..++.|-+|+ +.....||.|.++.-
T Consensus 32 ~~~~i~Gk~Rk~~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 32 ILAYISGKMRMHYIRILPGDRVVVEIT 58 (71)
T ss_dssp CCCEECHHHHHTCCCCCTTCEEEEECC
T ss_pred EEEEEcceEeccCcCCCCCCEEEEEEE
Confidence 36789999996 999999999999863
No 79
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=51.41 E-value=16 Score=25.02 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred CHHHHhhCCCCCCCEEEEEe-ccCCcEEEEeccCC-CCCCCeEEEeH-hhhhcccccCCCeEEEEe
Q psy3865 21 ESAKMDELNLFRGDTVLLRG-KRRKESVCIVLSDD-TCPDEKIRMNR-VMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~G-kr~~~tvai~~~~~-d~~~~~Irid~-~~R~N~~v~igD~V~V~~ 83 (107)
++..+..=.+.-|-+|.++. .....++-++.+.+ +...+.|-++. ..|.=+|-+.||.|++..
T Consensus 76 d~~~~~~~~V~~Gs~V~l~~~~g~~~~y~iVg~~ead~~~~~IS~~SPlg~ALlGk~vGD~v~v~~ 141 (158)
T 2p4v_A 76 DYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNT 141 (158)
T ss_dssp CCCSSSCSSCSSSCEEEEECTTCCCEEEEBCCSTTCCSSSCCBCTTSHHHHHSTTCCTTCEEEEEC
T ss_pred CCccCCCCEEeccEEEEEEECCCCEEEEEEECHHHcCccCCeecCCCHHHHHhcCCCCCCEEEEEc
Confidence 33333333488899999985 22335676776664 45556666544 789999999999999984
No 80
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=50.24 E-value=22 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=13.4
Q ss_pred ecCHHHHhhCCCCCCCEEEEE
Q psy3865 19 RKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~ 39 (107)
++.-+.|....+..||+|.+.
T Consensus 31 ~v~GdSM~p~~i~~Gd~v~vd 51 (116)
T 1umu_A 31 KASGDSMIDGGISDGDLLIVD 51 (116)
T ss_dssp ECCSSTTGGGTCCTTCEEEEE
T ss_pred EECCCCcCCCCCCCCCEEEEE
Confidence 345566666666777777665
No 81
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=50.12 E-value=5.1 Score=25.05 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=15.5
Q ss_pred ecCH-HHHhhCCCCCCCEEEEE
Q psy3865 19 RKES-AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~-~~m~~Lgl~~GD~V~I~ 39 (107)
||++ +..+.|++..||+|.+.
T Consensus 54 ~l~~~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 54 PINETDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp ECCTTCCTTTTTCCTTEEEEEE
T ss_pred EcCCCCCHHHcCCCCCCEEEEE
Confidence 3444 57788888888888876
No 82
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=49.14 E-value=33 Score=23.22 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=41.1
Q ss_pred CCCCCCEEEEEe--ccCCcEEEEeccCC-CCCCC--eEEEeH-hhhhcccccCCCeEEEEe
Q psy3865 29 NLFRGDTVLLRG--KRRKESVCIVLSDD-TCPDE--KIRMNR-VMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 29 gl~~GD~V~I~G--kr~~~tvai~~~~~-d~~~~--~Irid~-~~R~N~~v~igD~V~V~~ 83 (107)
.+..|-+|.++. .....++-++.+.+ +...+ .|-++. ..|.=+|-+.||.|++..
T Consensus 82 ~V~~Gs~V~l~~~~~~~~~~~~iVg~~ead~~~~~~~IS~~SPlG~ALlGk~~GD~v~~~~ 142 (156)
T 2f23_A 82 VIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDT 142 (156)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEEEE
T ss_pred EEEeCcEEEEEEcCCCCEEEEEEEChhHcCcCCCCEEECCCCHHHHHHcCCCCCCEEEEEc
Confidence 588999999984 22235777776664 55667 555544 789999999999999986
No 83
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=48.69 E-value=8.5 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred CeEEEeHhhhhc-ccccCCCeEEEEeC
Q psy3865 59 EKIRMNRVMRNN-LRVRLSDVVSLVPC 84 (107)
Q Consensus 59 ~~Irid~~~R~N-~~v~igD~V~V~~~ 84 (107)
-..++.|-+|+| .....||.|.++.-
T Consensus 31 ~~~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 31 VTAHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp EEEEECSSGGGTTCCCCTTCEECCEEC
T ss_pred EEEEEcceEeccCccCCCCCEEEEEEe
Confidence 367899999976 99999999999863
No 84
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=47.59 E-value=19 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.435 Sum_probs=16.4
Q ss_pred EecCHHHHhhCCCCCCCEEEEE
Q psy3865 18 RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
.++.-+.|...|+.+||+|.|.
T Consensus 113 ~~v~GdSM~p~~i~~Gd~v~vd 134 (202)
T 1jhf_A 113 LRVSGMSMKDIGIMDGDLLAVH 134 (202)
T ss_dssp EECCSSTTGGGTCCTTCEEEEE
T ss_pred EEECCCCCCCCCCCCCCEEEEe
Confidence 3456678887788888888885
No 85
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=47.16 E-value=8.6 Score=22.31 Aligned_cols=11 Identities=45% Similarity=0.893 Sum_probs=8.0
Q ss_pred ccCCeEEEeEE
Q psy3865 7 FRGDTVLLRGK 17 (107)
Q Consensus 7 ~~~d~~~~rGi 17 (107)
|+||+|.+.|-
T Consensus 39 wdgdtvtvegq 49 (62)
T 2gjh_A 39 WDGDTVTVEGQ 49 (62)
T ss_dssp ECSSCEEEEEE
T ss_pred EcCCEEEEEeE
Confidence 77888877763
No 86
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=46.04 E-value=26 Score=20.44 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=28.2
Q ss_pred CcccCCeEEEeEEEecCH---HHHhhCCCCCCCEEEEEecc
Q psy3865 5 NLFRGDTVLLRGKRRKES---AKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 5 ~~~~~d~~~~rGiari~~---~~m~~Lgl~~GD~V~I~Gkr 42 (107)
++-.|+.+.|.++.- ++ ..+.+||+.+|..|++..+.
T Consensus 9 ~l~~G~~~~I~~i~~-~~~~~~rL~~lGi~~G~~v~v~~~~ 48 (77)
T 3e19_A 9 EMGPGDKGIVVNILG-GHNARQKLVSMGLTPGATIQVLESH 48 (77)
T ss_dssp GCCTTCEEEEEEECS-HHHHHHHHHTTTCSTTCEEEEEEC-
T ss_pred HCCCcCEEEEEEEEC-CHHHHHHHHHCCCCCCCEEEEEEec
Confidence 356799999988763 33 46679999999999998653
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=45.08 E-value=8.8 Score=24.01 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=16.4
Q ss_pred ecCH-HHHhhCCCCCCCEEEEE
Q psy3865 19 RKES-AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~-~~m~~Lgl~~GD~V~I~ 39 (107)
+|++ +..++|++..||+|.+.
T Consensus 56 ~l~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 56 PINETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp ECCTTCCTTTTTCCTTCEEEEE
T ss_pred EcCCCCCHHHcCCCCCCEEEEE
Confidence 3444 57889999999998876
No 88
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=45.00 E-value=30 Score=24.87 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=12.5
Q ss_pred eEEEecCHHHHhhCCCCCCCEEEEE
Q psy3865 15 RGKRRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 15 rGiari~~~~m~~Lgl~~GD~V~I~ 39 (107)
+|++.+|.+.|.+.+ .|-.|.++
T Consensus 124 vG~a~~sS~Ei~~~~--kG~aVkv~ 146 (195)
T 3zv0_C 124 VAIAQMSTVDLASCD--HGVVASVK 146 (195)
T ss_dssp EEEESSCHHHHHHCS--SSEEEEEE
T ss_pred EEEEcCCHHHHhhcC--CcEEEEEE
Confidence 455556665555532 55555554
No 89
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=44.89 E-value=29 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=12.5
Q ss_pred cCHHHHhh-----CCCCCCCEEEEE
Q psy3865 20 KESAKMDE-----LNLFRGDTVLLR 39 (107)
Q Consensus 20 i~~~~m~~-----Lgl~~GD~V~I~ 39 (107)
+.-+.|.. -.+..||+|.|.
T Consensus 49 V~GdSM~~~~g~~p~i~~Gd~v~vd 73 (133)
T 2hnf_A 49 VEGNSMTTPTGSKTSFPDGMLILVD 73 (133)
T ss_dssp CCSSTTCCC---CCCCCTTCEEEEE
T ss_pred EeCCCcCCCcCCCCccCCCCEEEEc
Confidence 45566664 566677777665
No 90
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=43.71 E-value=12 Score=28.11 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.3
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
+.+++|||.+||+|.+.
T Consensus 22 ~~L~~LGi~~Gd~llVH 38 (268)
T 3ijw_A 22 NDLRKLGLKKGMTVIVH 38 (268)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 56789999999999999
No 91
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=43.64 E-value=14 Score=22.90 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHhhCCCCCCCEEEEEecc
Q psy3865 23 AKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gkr 42 (107)
-..+.+|+.+||+|.|.-+.
T Consensus 42 Pvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred HhhHHhCCCCCCEEEEEECC
Confidence 34568999999999997543
No 92
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=42.71 E-value=14 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.6
Q ss_pred HHhhCCCCCCCEEEEEecc
Q psy3865 24 KMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gkr 42 (107)
...-+|+.+||+|+|.-+.
T Consensus 51 va~~~g~k~GdVvkI~R~S 69 (84)
T 4ayb_H 51 VARSINAKPGDIIRIIRKS 69 (84)
T ss_dssp HHHHHTCCTTCEEEEEEEE
T ss_pred hHHhhCCCCCCEEEEEEcC
Confidence 4568999999999998543
No 93
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=42.44 E-value=31 Score=21.22 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHhhCCCCCCCEEEEEecc
Q psy3865 23 AKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gkr 42 (107)
-..+.+|+.+||+|.|.-+.
T Consensus 44 Pvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 44 PVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp HHHHGGGCCTTCEEEEEEEE
T ss_pred HhhHHhCCCCCCEEEEEECC
Confidence 34568899999999997554
No 94
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=41.64 E-value=12 Score=21.00 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=25.3
Q ss_pred CcccCcccCCeEEEe--------EEEec--CHHHHhhCCCCCCCEEEEEec
Q psy3865 1 MDELNLFRGDTVLLR--------GKRRK--ESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 1 ~~~~~~~~~d~~~~r--------Giari--~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
|.+-|+|...+|... .+|.- ++..-.+|.+..||++.|-.+
T Consensus 1 ~g~~G~~P~~yv~~~~~~~~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~ 51 (62)
T 1g2b_A 1 MDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNS 51 (62)
T ss_dssp CCEEEEEEGGGEEECCCCSSSCEEEECSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCccccccceEeecCCCCCceEEEEeeeECCCCCCccCCCCCCEEEEEEe
Confidence 445677777777642 12222 223345888999999888754
No 95
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=40.88 E-value=46 Score=22.57 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=43.0
Q ss_pred CHHHH-hhCCCCCCCEEEEEe--ccCCcEEEEeccCC-CCCCCeEEEeH-hhhhcccccCCCeEEEEe
Q psy3865 21 ESAKM-DELNLFRGDTVLLRG--KRRKESVCIVLSDD-TCPDEKIRMNR-VMRNNLRVRLSDVVSLVP 83 (107)
Q Consensus 21 ~~~~m-~~Lgl~~GD~V~I~G--kr~~~tvai~~~~~-d~~~~~Irid~-~~R~N~~v~igD~V~V~~ 83 (107)
++..+ ..=-+.-|-+|.++. .....++-++.+.+ +...+.|-++. ..|.=+|-+.||.|++..
T Consensus 76 d~~~~~~~~~V~~Gs~V~l~~~~~~~~~~y~iVg~~ead~~~~~IS~~SPlG~ALlGk~~GD~v~v~~ 143 (158)
T 1grj_A 76 DVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKT 143 (158)
T ss_dssp CGGGSCCCSBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC--
T ss_pred CccccCCCCEEEeCcEEEEEECCCCCEEEEEEECHHHhCCcCCEEcCCCHHHHHHcCCCCCCEEEEEc
Confidence 44443 223478899999985 23335777776664 44567776655 788999999999999984
No 96
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=40.81 E-value=14 Score=27.68 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.5
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
+++++|||.+||+|.+.
T Consensus 20 ~~L~~LGI~~Gd~llVH 36 (273)
T 2nyg_A 20 EDLKALGLKKGMTVLVH 36 (273)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 56789999999999999
No 97
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=40.02 E-value=17 Score=28.32 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.8
Q ss_pred EecCHHHHhhCCCCCCCEEEEE
Q psy3865 18 RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.++++.++.|++.+||.|.+-
T Consensus 317 ~~l~~~~a~aL~v~~Gd~vr~~ 338 (342)
T 1yle_A 317 VALSVEAAEALGVGEGASVRLV 338 (342)
T ss_dssp EEECHHHHHHHTCCTTCEEEEE
T ss_pred EecCHHHHHhcCCCCCCEEEEE
Confidence 5589999999999999999874
No 98
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=39.73 E-value=15 Score=27.93 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=15.6
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
+.+++|||.+||+|.+.
T Consensus 29 ~~L~~LGI~~Gd~llVH 45 (286)
T 3sma_A 29 SDLAALGVRPGGVLLVH 45 (286)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 67789999999999999
No 99
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=38.86 E-value=14 Score=22.90 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=10.7
Q ss_pred CCCccEEEEccCC
Q psy3865 87 IVYGKRIHVLPID 99 (107)
Q Consensus 87 ~~~a~~V~l~P~~ 99 (107)
--.|++|+|||++
T Consensus 9 ~~~A~kVvLAP~~ 21 (83)
T 2jv2_A 9 GVIMSELKLKPLP 21 (83)
T ss_dssp CCCCCEEEEEESS
T ss_pred ceEEEEEEEcCCC
Confidence 3478999999995
No 100
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=38.86 E-value=23 Score=28.50 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred cccCCeEEEeEE----------EecCHHHHhhCCCCCCCEEEEE
Q psy3865 6 LFRGDTVLLRGK----------RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 6 ~~~~d~~~~rGi----------ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
+-...+=++|.. ++++|..+++.+++.||+|.=.
T Consensus 64 ~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 107 (427)
T 3l0o_A 64 IHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGV 107 (427)
T ss_dssp ECTTSCEEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred EcCCCceEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 333445567766 8899999999999999999755
No 101
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=38.72 E-value=45 Score=20.82 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.3
Q ss_pred CcccCCeEEE
Q psy3865 5 NLFRGDTVLL 14 (107)
Q Consensus 5 ~~~~~d~~~~ 14 (107)
.|.+||+|.|
T Consensus 32 ~i~~Gd~v~V 41 (109)
T 1kca_A 32 SFPDGMLILV 41 (109)
T ss_dssp CCCTTCEEEE
T ss_pred eeCCCCEEEE
Confidence 3555555555
No 102
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=38.64 E-value=8.3 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.1
Q ss_pred ecCH-HHHhhCCCCCCCEEEEE
Q psy3865 19 RKES-AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~-~~m~~Lgl~~GD~V~I~ 39 (107)
||++ +..++|++..||+|.+.
T Consensus 89 rI~~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 89 RIADNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp ECCTTCCTTTTTCCTTCEEEEE
T ss_pred ECCCCCCHHHcCCCCCCEEEEE
Confidence 3444 57789999999998875
No 103
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=38.45 E-value=22 Score=22.80 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
+.+.++++..||+|.|.-.
T Consensus 56 e~L~kekV~~GDVI~Id~~ 74 (95)
T 2cqa_A 56 ESLTKDKVQAGDVITIDKA 74 (95)
T ss_dssp HHHHHTTCCTTSEEEEETT
T ss_pred HHHHHcCceeCCEEEEEcc
Confidence 6778899999999999843
No 104
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=37.74 E-value=55 Score=19.18 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=15.6
Q ss_pred EecCHH-HHhhCCCCCCCEEEEE
Q psy3865 18 RRKESA-KMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~-~m~~Lgl~~GD~V~I~ 39 (107)
...+|. ..++.|+.+||+|.=-
T Consensus 24 ~~~~~~s~A~~aGl~~GD~I~~i 46 (87)
T 2i6v_A 24 SPGKDPVLFESIGLQDGDMAVAL 46 (87)
T ss_dssp EECSCHHHHHHTTCCTTCEEEEE
T ss_pred EeCCCCCHHHHCCCCCCCEEEEE
Confidence 444554 5578899999998644
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.43 E-value=8.7 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.5
Q ss_pred HHHHhhCCCCCCCEEEEE
Q psy3865 22 SAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~ 39 (107)
.+..+.|++..||+|.+.
T Consensus 77 ~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 77 TDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp TSCTTTTTCCTTEEEEEC
T ss_pred CCCHHHcCCCCCCEEEEE
Confidence 357788999999988875
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=35.76 E-value=7.8 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=14.9
Q ss_pred ecCH-HHHhhCCCCCCCEEEEE
Q psy3865 19 RKES-AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~-~~m~~Lgl~~GD~V~I~ 39 (107)
||++ +..+.|++..||+|.+.
T Consensus 66 ~l~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 66 PINETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp ECCTTCCTTTTTCCTTEEEEEE
T ss_pred EcCCCCCHHHcCCCCCCEEEEE
Confidence 3444 56778888888888765
No 107
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=34.48 E-value=8.4 Score=24.92 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.3
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
+..+.|++..||+|.+.
T Consensus 84 ~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 84 QTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp CCTTTTTCCTTEEEEEE
T ss_pred CCHHHcCCCCCCEEEEE
Confidence 57778888888888765
No 108
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=34.40 E-value=7.2 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.4
Q ss_pred cc-CcccCCeEEEeEEEec
Q psy3865 3 EL-NLFRGDTVLLRGKRRK 20 (107)
Q Consensus 3 ~~-~~~~~d~~~~rGiari 20 (107)
.| .||.||+|.|+--...
T Consensus 12 ~L~~l~~Gd~V~V~cs~~~ 30 (104)
T 2b1y_A 12 DLKELRAGTTLEISLSSVN 30 (104)
T ss_dssp CCCCCCTTCCCCCCCSSSC
T ss_pred hhhhccCCCEEEEEeCCce
Confidence 46 7899999998865443
No 109
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=33.50 E-value=70 Score=25.52 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHhhCCCCCCCEEEEEeccC---CcEEEEeccCCC-CCCCeEEEeHhhhhcccccCCCeEEEE
Q psy3865 22 SAKMDELNLFRGDTVLLRGKRR---KESVCIVLSDDT-CPDEKIRMNRVMRNNLRVRLSDVVSLV 82 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gkr~---~~tvai~~~~~d-~~~~~Irid~~~R~N~~v~igD~V~V~ 82 (107)
.+.++++++..||.|+|+-+.. ..--.+++|.++ -+.++|.+-=.-=-|+|+.+.+.-.|+
T Consensus 4 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~gyn~g~~~~~~~~~~ 68 (438)
T 1zq1_A 4 DEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNIGIALEKIRRIE 68 (438)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSCEEEEEGGGEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccCCceeeechhhcceEE
Confidence 4678899999999999984431 111233444332 245666655555679999998754343
No 110
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, , structural genomic, structural genomics, PSI-2; NMR {Clostridium thermocellum}
Probab=33.04 E-value=60 Score=22.15 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=60.7
Q ss_pred CcccCCeEEEeEEEecCH---HHHhhCCCCCCCEEEEEeccC----------CcEEEE---------e-ccC-----CCC
Q psy3865 5 NLFRGDTVLLRGKRRKES---AKMDELNLFRGDTVLLRGKRR----------KESVCI---------V-LSD-----DTC 56 (107)
Q Consensus 5 ~~~~~d~~~~rGiari~~---~~m~~Lgl~~GD~V~I~Gkr~----------~~tvai---------~-~~~-----~d~ 56 (107)
.+-.|+.+.|..+. -++ ..+.+||+.+|..|++..+.. ...+++ + ... ...
T Consensus 5 ~l~~G~~~~I~~I~-~~~~l~~rL~~mGl~pG~~V~Vv~~~P~ggpi~v~v~g~~iaLr~~~A~~I~Ve~~~~~~pL~~~ 83 (162)
T 2k5i_A 5 RLVPGVPARIKRLE-VSGELHEKLVGMGFVPGEEIEIVQVAPLGDPIVCKIGNRNITLRKREADLIEVEVVGGELPLILA 83 (162)
T ss_dssp GCCTTCEEEEEEES-CCSSHHHHHHHHTCCTTCEEEEEEECTTSCCEEEEETTEEEEECHHHHTTEEEEETTSCEEGGGC
T ss_pred HCCCcCEEEEEEEE-CCHHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEEEEeChhhcccEEEEEcccceehhhc
Confidence 46679999998887 455 466799999999999975421 112322 0 111 123
Q ss_pred CCCeEEEeHh-----hh---hcccccCCCeEEEEeC----------CCCCCccEEEEccCCccccC
Q psy3865 57 PDEKIRMNRV-----MR---NNLRVRLSDVVSLVPC----------PGIVYGKRIHVLPIDDSVQG 104 (107)
Q Consensus 57 ~~~~Irid~~-----~R---~N~~v~igD~V~V~~~----------~~~~~a~~V~l~P~~dti~~ 104 (107)
+.|..++.++ +| .|+|...|..|+|-+. =.-.-|.+|.+.|.+|.++.
T Consensus 84 ~~G~~~I~~i~g~~~~~~~L~~lG~~~G~~v~vv~~iv~v~~srialg~~~A~kI~V~~~~~~~~~ 149 (162)
T 2k5i_A 84 DDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKIWVRRVSDAGEE 149 (162)
T ss_dssp CSSEEEEEEECSCHHHHHHHHHHTCSSSCEEEEETTEEEETTEEESCSSTTGGGEEEEECCCCSSC
T ss_pred CCCCEEEEEEeCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEeChhHccEEEEEEccccccc
Confidence 3343344332 22 4789999999988641 02256777777777776653
No 111
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=32.69 E-value=22 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.3
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
.-++.|++..||.|+|+
T Consensus 115 ~LR~~L~LkDGD~V~I~ 131 (146)
T 2oyn_A 115 KLREQFNLKDGDVIKIL 131 (146)
T ss_dssp CHHHHHTCCTTCEEEEE
T ss_pred chhhhcCCCCCCEEEEE
Confidence 44568999999999986
No 112
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=32.68 E-value=22 Score=19.61 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=5.3
Q ss_pred CCCCCCCEEEE
Q psy3865 28 LNLFRGDTVLL 38 (107)
Q Consensus 28 Lgl~~GD~V~I 38 (107)
|.+..||+|.|
T Consensus 20 Ls~~~Gd~i~v 30 (62)
T 2fpe_A 20 LELEVDDPLLV 30 (62)
T ss_dssp CCBCTTCEEEE
T ss_pred CcCCCCCEEEE
Confidence 44444555444
No 113
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=32.32 E-value=28 Score=18.76 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.7
Q ss_pred HHhhCCCCCCCEEEEEec
Q psy3865 24 KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gk 41 (107)
.-.+|.+..||+|.|-.+
T Consensus 14 ~~~eLs~~~Gd~i~v~~~ 31 (58)
T 1zuy_A 14 SPSELPLKKGDVIYITRE 31 (58)
T ss_dssp CTTBCCBCTTCEEEEEEE
T ss_pred CCCcCCCCCCCEEEEEEe
Confidence 446899999999999765
No 114
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=31.74 E-value=32 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred cccCCeEEEeEE----------EecCHHHHhhCCCCCCCEEEEE
Q psy3865 6 LFRGDTVLLRGK----------RRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 6 ~~~~d~~~~rGi----------ari~~~~m~~Lgl~~GD~V~I~ 39 (107)
+-+..+=++|.. +++||..+++.+++.||+|.=.
T Consensus 60 ~~~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 103 (422)
T 3ice_A 60 ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 103 (422)
T ss_dssp ECTTSCEEEECGGGTTCCCTTCEEBCHHHHHHHTCCTTCEEEEE
T ss_pred EcCCCceEeeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 333345566764 8899999999999999999643
No 115
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=31.66 E-value=27 Score=20.72 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=14.1
Q ss_pred ecCHHHHhhCCCCCCCEEEEE
Q psy3865 19 RKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~ 39 (107)
-++++...+--+..||.|+|-
T Consensus 39 iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 39 VVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EECHHHHTTCBCCTTCEEEEE
T ss_pred ECChHHcCcccCCCCCEEEEE
Confidence 345566666777777777774
No 116
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=30.92 E-value=20 Score=20.70 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=15.6
Q ss_pred CHHHHhhCCCCCCCEEEEEec
Q psy3865 21 ESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
.+..-.+|.+..||+|.|..+
T Consensus 16 ~a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 16 IPQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp CCSSTTBCCBCTTCEEEEEEE
T ss_pred CCCCcCCcCCCCCCEEEEeEe
Confidence 445556899999999988743
No 117
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=30.69 E-value=37 Score=19.97 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=18.9
Q ss_pred ccccCCCeEEEEeCCCCCC-ccEEEEccC
Q psy3865 71 LRVRLSDVVSLVPCPGIVY-GKRIHVLPI 98 (107)
Q Consensus 71 ~~v~igD~V~V~~~~~~~~-a~~V~l~P~ 98 (107)
-.+++||.|.++-. ++.+ ..++.|++.
T Consensus 44 ~~~~~Gd~V~v~V~-~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 44 ENLNVGDEIIVQAI-DVRPEKREIDFKYI 71 (80)
T ss_dssp GGCCTTCEEEEEEE-EEETTTTEEEEEEC
T ss_pred eeeCCCCEEEEEEE-EEECCCCEEEEEEe
Confidence 35899999998864 4444 367777654
No 118
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=30.18 E-value=32 Score=18.66 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.6
Q ss_pred HHhhCCCCCCCEEEEEec
Q psy3865 24 KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gk 41 (107)
.-.+|.+..||+|.|-.+
T Consensus 14 ~~~eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 14 HDDELTISVGEIITNIRK 31 (58)
T ss_dssp STTBCCBCTTCEEEEEEC
T ss_pred CcCEeeECCCCEEEEEEe
Confidence 346899999999998764
No 119
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=30.17 E-value=8.3 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.6
Q ss_pred CHHHHhhCCCCCCCEEEEE
Q psy3865 21 ESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.+..+.|++..||+|.+.
T Consensus 78 ~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 78 ETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp SSSHHHHHHCSSEEEEEEE
T ss_pred CCCCHHHcCCCCCCEEEEE
Confidence 3358889999999999876
No 120
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=29.40 E-value=57 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.7
Q ss_pred cccC--CeEEEeEEE---ecCHH---HHhhCCCCCCCEEEEEec
Q psy3865 6 LFRG--DTVLLRGKR---RKESA---KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 6 ~~~~--d~~~~rGia---ri~~~---~m~~Lgl~~GD~V~I~Gk 41 (107)
+-.| +.+.|..+. --+++ .+.++|+.+|..|++..+
T Consensus 157 l~~G~~~~~~I~~i~e~~~~~~~~~~~L~~~Gi~pG~~v~v~~~ 200 (230)
T 1fx7_A 157 LPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETT 200 (230)
T ss_dssp SCSSSCEEEEEEEECHHHHTCHHHHHHHHHTTCCTTCEEEEEEC
T ss_pred cCCCCCcEEEEEEEeccCCCCHHHHHHHHHCCCCCCCEEEEEEc
Confidence 4567 788887775 34665 445779999999999854
No 121
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=29.17 E-value=32 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.4
Q ss_pred HHHhhCCCCCCCEEEEEecc
Q psy3865 23 AKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gkr 42 (107)
...++|.+..||+|+|-.+.
T Consensus 19 ~~~~ei~lk~Gd~VeVl~k~ 38 (71)
T 1v1c_A 19 AEQDAITLREGQYVEVLDAA 38 (71)
T ss_dssp CCTTBCCBCTTCEEEEEEEE
T ss_pred CCcceeeecCCCEEEEEEcC
Confidence 35679999999999998654
No 122
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein; 2.15A {Gallus gallus} SCOP: b.29.1.3
Probab=28.88 E-value=18 Score=23.78 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=15.3
Q ss_pred HhhCCCCCCCEEEEEec
Q psy3865 25 MDELNLFRGDTVLLRGK 41 (107)
Q Consensus 25 m~~Lgl~~GD~V~I~Gk 41 (107)
+.++|+.+|..|.|+|.
T Consensus 5 ~~~~gl~~G~~i~I~G~ 21 (132)
T 1qmj_A 5 VTQLDVQPGECVKVKGK 21 (132)
T ss_dssp EESCCBCTTCCEEEEEE
T ss_pred EEcCCCCcCCEEEEEEE
Confidence 56899999999999995
No 123
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=28.73 E-value=35 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=15.0
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRDK 31 (57)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEe
Confidence 3446899999999999764
No 124
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=28.47 E-value=35 Score=18.38 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.0
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISYK 31 (59)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 3346899999999999754
No 125
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=28.15 E-value=69 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=15.5
Q ss_pred cccCCCeEEEEeCCCCCCccEE
Q psy3865 72 RVRLSDVVSLVPCPGIVYGKRI 93 (107)
Q Consensus 72 ~v~igD~V~V~~~~~~~~a~~V 93 (107)
.+.+||.|.|..+.....-++-
T Consensus 49 ~~k~GD~V~I~E~RPlSKtK~~ 70 (89)
T 1qd7_I 49 EAKVGDIVKIMETRPLSATKRF 70 (89)
T ss_pred CCCCCCEEEEEEcccCCCCEEE
Confidence 5899999999987444333333
No 126
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3
Probab=28.10 E-value=19 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.3
Q ss_pred HhhCCCCCCCEEEEEec
Q psy3865 25 MDELNLFRGDTVLLRGK 41 (107)
Q Consensus 25 m~~Lgl~~GD~V~I~Gk 41 (107)
+.++++.+|..|.|+|.
T Consensus 8 ~~~~~l~~G~~i~I~G~ 24 (135)
T 3dui_A 8 CTNLGLKPGQRLTVKGI 24 (135)
T ss_dssp EECCCCCTTCCEEEEEE
T ss_pred EEeCCCCCCCEEEEEEE
Confidence 46899999999999995
No 127
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=27.98 E-value=36 Score=18.40 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 14 QQDGDLGLKPGDKVQLLEK 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCccCCCCCEEEEEEe
Confidence 3446899999999999754
No 128
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=27.89 E-value=30 Score=19.50 Aligned_cols=14 Identities=43% Similarity=0.344 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|..
T Consensus 26 eLsf~~Gd~i~v~~ 39 (70)
T 1gcq_C 26 FLRLNPGDIVELTK 39 (70)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cCCcCCCCEEEEEe
Confidence 34455555555543
No 129
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.85 E-value=71 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=17.4
Q ss_pred cccCCCeEEEEeCCCCCCccEEEEc
Q psy3865 72 RVRLSDVVSLVPCPGIVYGKRIHVL 96 (107)
Q Consensus 72 ~v~igD~V~V~~~~~~~~a~~V~l~ 96 (107)
.+.+||.|+|..+.....-++-.|.
T Consensus 79 ~~~vGD~V~I~E~RPlSKtKr~~vv 103 (113)
T 3j20_R 79 NAKVGDKVLIAETRPLSKTKHFVVV 103 (113)
T ss_dssp CCCTTSEEEEEECSCSSSSEEEEEE
T ss_pred CCCCCCEEEEEecccCCCcEeEEEE
Confidence 6899999999987544444444443
No 130
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=27.82 E-value=43 Score=20.63 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.5
Q ss_pred hCCCCCCCEEEEEec
Q psy3865 27 ELNLFRGDTVLLRGK 41 (107)
Q Consensus 27 ~Lgl~~GD~V~I~Gk 41 (107)
.+.+.+||+|.|+|+
T Consensus 61 ~~~i~~Gdvv~i~g~ 75 (97)
T 3e0e_A 61 DFEVKKGDIAEVSGY 75 (97)
T ss_dssp GCCCCTTCEEEEEEE
T ss_pred ccccCCCCEEEEEEE
Confidence 348999999999874
No 131
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=27.77 E-value=37 Score=18.16 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=14.9
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 4e6r_A 13 EREDELSLVXGSRVTVMEX 31 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred CCCCEeeEeCCCEEEEeEc
Confidence 3446799999999999754
No 132
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=27.64 E-value=12 Score=27.36 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=16.3
Q ss_pred CHHHHhhCCCCCCCEEEEE
Q psy3865 21 ESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.+..++|++..||+|.+.
T Consensus 108 ~ddTPeDLdMEDGDtIDV~ 126 (207)
T 3tix_A 108 ADQTPEDLDMEDNDIIEAH 126 (207)
T ss_dssp SSCCTTTTTCCTTEEEEEC
T ss_pred CCCCHHHcCCCCCCEEEEE
Confidence 3467789999999999987
No 133
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=27.56 E-value=13 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=22.9
Q ss_pred cCHHHHhhCCCCCCCEEEEEeccCCcEEEEeccC
Q psy3865 20 KESAKMDELNLFRGDTVLLRGKRRKESVCIVLSD 53 (107)
Q Consensus 20 i~~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~ 53 (107)
++-..++.|.++.||.|.+-+-+ +.+.-++-+.
T Consensus 54 V~~~~vk~LeLRiGD~VKVd~vp-K~~hiVvGf~ 86 (153)
T 2fhd_A 54 VNSNQIKRFFLKKGDVVQSTRLG-KIKHTVVKTF 86 (153)
T ss_dssp EETTSEEESCCCTTCEEEETTST-TCCEEEEEEE
T ss_pred cChhhceeeeeecCCEEEECCCC-CccEEEEEec
Confidence 34466778999999999999533 3455555444
No 134
>3zvk_E VAPB2, antitoxin of toxin-antitoxin system VAPB; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=27.48 E-value=40 Score=20.48 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=25.4
Q ss_pred CeEEEeHhhhhcccccCCCeEEEEeCCCCCCccEEEEccCCccccC
Q psy3865 59 EKIRMNRVMRNNLRVRLSDVVSLVPCPGIVYGKRIHVLPIDDSVQG 104 (107)
Q Consensus 59 ~~Irid~~~R~N~~v~igD~V~V~~~~~~~~a~~V~l~P~~dti~~ 104 (107)
..|||.+..+- -||.|.|+.. +..+.|.|...+++.
T Consensus 13 qAVRLPk~~~~-----~g~eV~I~~~-----g~~iii~P~~~~w~~ 48 (78)
T 3zvk_E 13 QAVRLPKEFRF-----SVKEVSVIPL-----GKGIVLQPLPNSWKD 48 (78)
T ss_dssp EEEEECGGGCC-----SSSEEEEEEE-----TTEEEEEECCSSHHH
T ss_pred eeEECCHHHcC-----CCCEEEEEEE-----CCEEEEEeCCCCHHH
Confidence 35667777654 3799999974 346999998876653
No 135
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=27.40 E-value=32 Score=18.35 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=7.5
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 16 eLs~~~Gd~i~v~~ 29 (54)
T 2a28_A 16 EISIDPGDIITVIR 29 (54)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CccCCCCCEEEEEE
Confidence 35555555555544
No 136
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=27.28 E-value=39 Score=18.19 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~ 32 (58)
T 1sem_A 14 QESGELAFKRGDVITLINK 32 (58)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEe
Confidence 3446899999999999764
No 137
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=27.14 E-value=31 Score=19.58 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=5.8
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.|.|
T Consensus 22 eLs~~~Gd~i~v 33 (71)
T 2fpf_A 22 ELELEVDDPLLV 33 (71)
T ss_dssp BCCBCTTCEEEE
T ss_pred cccCcCCcEEEE
Confidence 444444554444
No 138
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=27.13 E-value=32 Score=19.00 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.3
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 22 eLs~~~Gd~i~v~~ 35 (64)
T 2jte_A 22 ELTFREGEIIHLIS 35 (64)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 35555555555543
No 139
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=27.07 E-value=31 Score=19.78 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=6.2
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.|.|-
T Consensus 18 eLs~~~Gd~i~vl 30 (69)
T 2ydl_A 18 ELTIKEGDIVTLI 30 (69)
T ss_dssp BCCBCTTCEEEEE
T ss_pred ccccCCCCEEEEE
Confidence 4444455554443
No 140
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Probab=26.99 E-value=14 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=15.1
Q ss_pred HhhCCCCCCCEEEEEec
Q psy3865 25 MDELNLFRGDTVLLRGK 41 (107)
Q Consensus 25 m~~Lgl~~GD~V~I~Gk 41 (107)
+.++|+.+|..|.|+|.
T Consensus 4 ~~~~gl~~G~~i~I~G~ 20 (129)
T 1hlc_A 4 VKNMDMKPGSTLKITGS 20 (129)
T ss_dssp EEEEEECTTCEEEEEEE
T ss_pred EecCCCCcCCEEEEEEE
Confidence 56789999999999995
No 141
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=26.97 E-value=39 Score=18.43 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
+.-.+|.+..||+|.|-.+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~ 35 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIKE 35 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 3446899999999999764
No 142
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=26.90 E-value=58 Score=19.67 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=18.5
Q ss_pred CCeEEEeEEEecCHHHHhhCCCCCCCEEEEE
Q psy3865 9 GDTVLLRGKRRKESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 9 ~d~~~~rGiari~~~~m~~Lgl~~GD~V~I~ 39 (107)
.+-|.|..+..=+|.. . |+.+||.|.=-
T Consensus 6 ~~Gv~V~~V~~~spA~--~-GL~~GD~I~~I 33 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAA--D-VLHAGDLITEI 33 (100)
T ss_dssp CCCEEEEEECTTSGGG--G-TCCTTCEEEEE
T ss_pred CCCEEEEEeCCCCchH--H-CCCCCCEEEEE
Confidence 3446666665556655 4 99999987644
No 143
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=26.39 E-value=32 Score=22.91 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=12.2
Q ss_pred CCCCCEEEEEeccC
Q psy3865 30 LFRGDTVLLRGKRR 43 (107)
Q Consensus 30 l~~GD~V~I~Gkr~ 43 (107)
+.+||+|+++|++.
T Consensus 136 ~~~gDvVLv~Gsg~ 149 (163)
T 3mvn_A 136 AKPNDHILIMSNGA 149 (163)
T ss_dssp CCTTCEEEEECSSC
T ss_pred CCCCCEEEEECCCC
Confidence 57999999999874
No 144
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=26.13 E-value=34 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.4
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 19 eLs~~~Gd~i~v~ 31 (61)
T 1y0m_A 19 ELTFTKSAIIQNV 31 (61)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CcCCcCCCEEEEE
Confidence 3445555555554
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=25.81 E-value=40 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.5
Q ss_pred HHHHhhCCCCCCCEEEEEe
Q psy3865 22 SAKMDELNLFRGDTVLLRG 40 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~G 40 (107)
++.++++|+..||+|.|.+
T Consensus 389 ~~~l~~~g~~~gd~v~i~~ 407 (416)
T 1udx_A 389 EAALRAKGVRAGDLVRIGG 407 (416)
T ss_dssp HHHHHTTTCCTTCEEEETT
T ss_pred HHHHHHcCCCCCCEEEEec
Confidence 3678899999999999964
No 146
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=25.78 E-value=35 Score=19.39 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=6.7
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|.
T Consensus 24 eLs~~~Gd~i~v~ 36 (72)
T 1spk_A 24 LLSFAQGDVLTLL 36 (72)
T ss_dssp BCCBCTTCEEEEC
T ss_pred CCcCCCCCEEEEe
Confidence 3455555555554
No 147
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=25.76 E-value=33 Score=19.84 Aligned_cols=13 Identities=46% Similarity=0.470 Sum_probs=6.2
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|-.
T Consensus 35 Lsf~~Gd~i~v~~ 47 (78)
T 1k1z_A 35 LRLNPGDIVELTK 47 (78)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 4444555554443
No 148
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=25.68 E-value=29 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=15.0
Q ss_pred HHHHhhCCCCCCCEEEEEec
Q psy3865 22 SAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gk 41 (107)
+..-.+|.+..||+|.|-.+
T Consensus 14 ~~~~~eLsf~~Gd~i~v~~~ 33 (65)
T 1b07_A 14 GNDEEDLPFKKGDILRIRDK 33 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCccCCcCCCEEEEEEe
Confidence 34446889999999988764
No 149
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=25.67 E-value=41 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.6
Q ss_pred HHHHhhCCCCCCCEEEEEec
Q psy3865 22 SAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gk 41 (107)
+..-.+|.+..||+|.|..+
T Consensus 18 ~~~~~eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 18 SDYEDDLNFEKDQEIIVTSV 37 (68)
T ss_dssp CSCTTBCCBCTTCEEEEEEE
T ss_pred cCCcCCCCCCCCCEEEEEEe
Confidence 34456899999999999754
No 150
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=25.64 E-value=36 Score=18.44 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.3
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 16 eLs~~~Gd~i~v~~ 29 (58)
T 1jo8_A 16 ELTFVENDKIINIE 29 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcccCCCCEEEEEE
Confidence 35555555555543
No 151
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.51 E-value=36 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.9
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|-
T Consensus 22 Ls~~~Gd~i~v~ 33 (62)
T 1k4u_S 22 LEFQEGDIILVL 33 (62)
T ss_dssp CCBCSSCEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 444455555544
No 152
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=25.30 E-value=41 Score=18.10 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=14.4
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 15 QTGDELTFKEGDTIIVHQK 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 3446888999999988754
No 153
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=25.15 E-value=37 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=5.8
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|.
T Consensus 21 Ls~~~Gd~i~v~ 32 (59)
T 2g6f_X 21 LSFSKGDVIHVT 32 (59)
T ss_dssp CCBCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 444445555444
No 154
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=25.06 E-value=44 Score=18.31 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=15.2
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
+.-.+|.+..||+|.|-.+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 18 SHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 3446899999999999765
No 155
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=25.02 E-value=53 Score=21.31 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=24.0
Q ss_pred cCcccCCeEEEeEEE--------------------ecCHHHHhhCCCCCCCEEEEEec
Q psy3865 4 LNLFRGDTVLLRGKR--------------------RKESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 4 ~~~~~~d~~~~rGia--------------------ri~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
+.++++-.|.|+|.. -|+.+...-+.+.++|.|+|.|+
T Consensus 32 ~~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 32 KSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp TTSCSSEEEEEEEEEEEEEETTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEE
T ss_pred hhCcCCCeEEEEEEEEEEeCCCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEE
Confidence 345666666666643 34555566667777777777775
No 156
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=24.96 E-value=37 Score=18.59 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=6.2
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.+.|-
T Consensus 23 eLs~~~Gd~i~v~ 35 (65)
T 3u23_A 23 ELELKVGDIIDIN 35 (65)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CcCCCCCCEEEEE
Confidence 4444455544443
No 157
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=24.87 E-value=44 Score=18.37 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.6
Q ss_pred HHHHhhCCCCCCCEEEEEec
Q psy3865 22 SAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gk 41 (107)
+..-.+|.+..||+|.|..+
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~~ 36 (64)
T 2ak5_A 17 QTNEDELSFSKGDVIHVTRV 36 (64)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CcCcCcccCCCCCEEEEeEe
Confidence 33446899999999999764
No 158
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=24.71 E-value=38 Score=18.34 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=7.8
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 19 eLs~~~Gd~i~v~~ 32 (60)
T 2x3w_D 19 ELSFKAGDELTKLG 32 (60)
T ss_dssp BCCBCTTCEEEECS
T ss_pred cccCCCCCEEEEEE
Confidence 45556666666543
No 159
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=24.62 E-value=46 Score=28.08 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.1
Q ss_pred CHHHHhhCCCCCCCEEEEE
Q psy3865 21 ESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.+.++++++..||+|.|+
T Consensus 358 N~d~i~~~di~iGD~V~V~ 376 (667)
T 1dgs_A 358 NESYIEELDIRIGDWVLVH 376 (667)
T ss_dssp SHHHHHHTTCBSSCEEEEE
T ss_pred CHHHHHHcCCCCCCEEEEE
Confidence 3488999999999999998
No 160
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=24.57 E-value=38 Score=19.14 Aligned_cols=13 Identities=46% Similarity=0.762 Sum_probs=7.2
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.+.|-
T Consensus 17 eLs~~~Gd~i~v~ 29 (65)
T 2nwm_A 17 ELTLQKGDIVYIH 29 (65)
T ss_dssp BCCBCTTCEEEEE
T ss_pred ccCCcCCCEEEEE
Confidence 5555555555553
No 161
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=24.54 E-value=39 Score=18.98 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=13.2
Q ss_pred HHhhCCCCCCCEEEEEec
Q psy3865 24 KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gk 41 (107)
.-.+|.+..||+|.|..+
T Consensus 16 ~~~eLsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTRM 33 (67)
T ss_dssp CTTBCCBCTTCEEEEEEE
T ss_pred CCCccccCCCCEEEEEEe
Confidence 345788888888888654
No 162
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=24.50 E-value=38 Score=18.49 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.7
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|-
T Consensus 23 Ls~~~Gd~i~v~ 34 (60)
T 2gnc_A 23 LSFKKGASLLLY 34 (60)
T ss_dssp CCBCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 444445554444
No 163
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=24.38 E-value=44 Score=19.28 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
+.-.+|.+..||+|.|..+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 17 ENDNELRLAEGDIVFISYK 35 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCCCccCCcCCCEEEEEEE
Confidence 3446899999999999754
No 164
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=24.34 E-value=39 Score=28.50 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=17.1
Q ss_pred CHHHHhhCCCCCCCEEEEE
Q psy3865 21 ESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.+.+++++|..||+|.|+
T Consensus 360 N~d~i~~~di~iGD~V~V~ 378 (671)
T 2owo_A 360 NADEIERLGLRIGDKVVIR 378 (671)
T ss_dssp SHHHHHHHTCCBTCEEEEE
T ss_pred CHHHHHHcCCCCCCEEEEE
Confidence 3488999999999999998
No 165
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=24.29 E-value=38 Score=28.37 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.1
Q ss_pred ccccCCCeEEEEeCCCC
Q psy3865 71 LRVRLSDVVSLVPCPGI 87 (107)
Q Consensus 71 ~~v~igD~V~V~~~~~~ 87 (107)
+++++||+|.|+++.++
T Consensus 377 ~di~iGD~V~V~rAGdV 393 (615)
T 3sgi_A 377 KGVLIGDTVVIRKAGDV 393 (615)
T ss_dssp TCCCBTCEEEEECCSSS
T ss_pred cCCCCCCEEEEEEcCCC
Confidence 46889999999997554
No 166
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.18 E-value=70 Score=21.17 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=30.7
Q ss_pred EecCHHHHhhCC-----CCCCCEEEEE-eccCCc--EEEEeccCCCCCCCeEEEeHhhhhcc
Q psy3865 18 RRKESAKMDELN-----LFRGDTVLLR-GKRRKE--SVCIVLSDDTCPDEKIRMNRVMRNNL 71 (107)
Q Consensus 18 ari~~~~m~~Lg-----l~~GD~V~I~-Gkr~~~--tvai~~~~~d~~~~~Irid~~~R~N~ 71 (107)
|.||+|-.+++| +..||.|.|- |+.+.+ .|..+.+ ..+.|.+.++.+.+.
T Consensus 29 a~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~----k~~~V~VEgvn~~k~ 86 (121)
T 3j21_U 29 APLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDL----KRYRIYVEGATLRKT 86 (121)
T ss_dssp EEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEET----TTTEEEETTCEEECS
T ss_pred CcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEe----cCCEEEEeCeEEEec
Confidence 678888888765 6799999987 542222 2222322 335677777655543
No 167
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=24.14 E-value=25 Score=19.44 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHhhCCCCCCCEEEEEec
Q psy3865 24 KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gk 41 (107)
.-.+|.+..||+|.|-.+
T Consensus 14 ~~~eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 14 HDDELTIRVGEIIRNVKK 31 (62)
T ss_dssp STTBCCBCTTCEEEEEEE
T ss_pred CcCCcCCcCCCEEEEEEe
Confidence 345788888888888764
No 168
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=24.12 E-value=39 Score=18.33 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=7.6
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 19 eLs~~~Gd~i~v~~ 32 (60)
T 1oot_A 19 DLPFRKGDVITILK 32 (60)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred EeeEcCCCEEEEEE
Confidence 35555555555544
No 169
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=24.10 E-value=52 Score=22.35 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=32.3
Q ss_pred EecCHHHHhhCC-----CCCCCEEEEE-eccCCc--EEEEeccCCCCCCCeEEEeHhhhhcc
Q psy3865 18 RRKESAKMDELN-----LFRGDTVLLR-GKRRKE--SVCIVLSDDTCPDEKIRMNRVMRNNL 71 (107)
Q Consensus 18 ari~~~~m~~Lg-----l~~GD~V~I~-Gkr~~~--tvai~~~~~d~~~~~Irid~~~R~N~ 71 (107)
|.||.|-.+++| |..||.|.|- |+-+.. .|..+.+ ..+.|.+.++.+.+.
T Consensus 32 a~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~----kk~~V~VEgVn~~K~ 89 (135)
T 4a17_S 32 AHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGNKGKVTQVYR----KKWAIHVEKISKNKL 89 (135)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEET----TTTEEEETTCCEEET
T ss_pred CcCCHHHHHHhCCCcccccCCCEEEEeecCCCCceeeEEEEEc----CCCEEEEeCeEEEcC
Confidence 678889998887 8899999987 542222 2222322 335677777766653
No 170
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=23.95 E-value=36 Score=21.06 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.6
Q ss_pred HHhhCCCC
Q psy3865 24 KMDELNLF 31 (107)
Q Consensus 24 ~m~~Lgl~ 31 (107)
.+++|++.
T Consensus 42 LL~~L~~~ 49 (87)
T 1tyg_B 42 LLASYQLE 49 (87)
T ss_dssp HHHHTTCT
T ss_pred HHHHhCCC
Confidence 34455443
No 171
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=23.81 E-value=40 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=8.6
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 18 eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 18 ELTIKSGDKVYILD 31 (60)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CccCCCCCEEEEEe
Confidence 45666666666654
No 172
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=23.72 E-value=40 Score=18.79 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=7.8
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (67)
T 2kxc_A 23 LLSFAQGDVITLLI 36 (67)
T ss_dssp BCCBCTTCEEEESS
T ss_pred CCcCCCCCEEEEeE
Confidence 35555666666543
No 173
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=23.71 E-value=41 Score=18.38 Aligned_cols=13 Identities=38% Similarity=0.628 Sum_probs=6.6
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|-.
T Consensus 21 Ls~~~Gd~i~v~~ 33 (60)
T 1w70_A 21 LNFKAGDVIFLLS 33 (60)
T ss_dssp CCBCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 4455555555543
No 174
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=23.68 E-value=48 Score=18.17 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.6
Q ss_pred HHhhCCCCCCCEEEEEec
Q psy3865 24 KMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 24 ~m~~Lgl~~GD~V~I~Gk 41 (107)
.-.+|.+..||+|.|..+
T Consensus 22 ~~~eLs~~~Gd~i~v~~~ 39 (65)
T 3ulr_B 22 GDDEISFDPDDIITNIEM 39 (65)
T ss_dssp STTBCCBCTTCEEEEEEC
T ss_pred CcCEeeEecCCEEEEEEe
Confidence 345899999999999754
No 175
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=23.67 E-value=34 Score=19.28 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=7.9
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.|.|-
T Consensus 24 eLs~~~Gd~i~v~ 36 (67)
T 2eyx_A 24 ALALEVGELVKVT 36 (67)
T ss_dssp BCCBCSSEEEEEE
T ss_pred ccccCCCCEEEEE
Confidence 5666666666654
No 176
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=23.62 E-value=40 Score=19.20 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=7.1
Q ss_pred ccCcccCCeEEEeE
Q psy3865 3 ELNLFRGDTVLLRG 16 (107)
Q Consensus 3 ~~~~~~~d~~~~rG 16 (107)
||.|-+||.+.|-.
T Consensus 19 eLsf~~Gd~i~v~~ 32 (68)
T 2ew3_A 19 ELGFKEGDIITLTN 32 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 45555555555443
No 177
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=23.43 E-value=48 Score=18.91 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~ 43 (73)
T 3c0c_A 25 ENDGELGFREGDLITLTNQ 43 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCccCcCCCEEEEEEe
Confidence 4446899999999999764
No 178
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.34 E-value=1.3e+02 Score=23.99 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHhhCCCCCCCEEEEEeccCCcEEEEeccCCC-CCCCeEEEeHhhhhcccccCCCe
Q psy3865 22 SAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDT-CPDEKIRMNRVMRNNLRVRLSDV 78 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gkr~~~tvai~~~~~d-~~~~~Irid~~~R~N~~v~igD~ 78 (107)
.+.++++++..||.|+|+-+.. .--.++++.++ -+.++|.+-=.-=-|+|+.+.+.
T Consensus 8 ~~~~~~~~~~~gd~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~kl~~gyn~g~~~~~~ 64 (435)
T 2d6f_A 8 RKFLESASIDVGDMVLVEKPDV-TYEGMVLDRADDADDRHIVLKLENGYNIGVEISDA 64 (435)
T ss_dssp HHHHHTTTCCTTCEEEEECSSC-EEEEEECCCCTTSCSSEEEEECTTSCEEEEECTTC
T ss_pred HHHHHHcCCCCCCEEEEEECCe-EEEEEEecCcccCCCCeEEEEccCceeeeeccccc
Confidence 4678999999999999985441 23344555332 24566666555567899888663
No 179
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=23.33 E-value=63 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.2
Q ss_pred ecCHHHHhhCCCCCCCEEEEEec
Q psy3865 19 RKESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 19 ri~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
=++++..++|.+ ||+|.|.|+
T Consensus 22 Plt~e~v~~L~v--GD~V~LsG~ 42 (192)
T 2isb_A 22 PLVKDQILKLKV--GDVVYITGE 42 (192)
T ss_dssp SCCHHHHHHCCT--TCEEEEEEE
T ss_pred CCCHHHHhhCCC--CCEEEEEEE
Confidence 356677777665 999999995
No 180
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=23.33 E-value=42 Score=18.08 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=6.6
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 17 eLs~~~Gd~i~v~ 29 (58)
T 1uti_A 17 ELGFRSGEVVEVL 29 (58)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 3445555555554
No 181
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=23.24 E-value=41 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.2
Q ss_pred cccCcccCCeEEEeE
Q psy3865 2 DELNLFRGDTVLLRG 16 (107)
Q Consensus 2 ~~~~~~~~d~~~~rG 16 (107)
+||.|-+||.+.|-.
T Consensus 4 ~eLs~~~Gd~i~v~~ 18 (63)
T 1tuc_A 4 REVTMKKGDILTLLN 18 (63)
T ss_dssp CCCCBCTTCEEEEEE
T ss_pred cccCCCCCCEEEEEE
Confidence 456666666666643
No 182
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=23.24 E-value=42 Score=18.01 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=7.1
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 18 eLs~~~Gd~i~v~~ 31 (58)
T 2vwf_A 18 ELGFRRGDFIHVMD 31 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 34555555555543
No 183
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=23.13 E-value=42 Score=19.35 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.6
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.|.|-
T Consensus 27 eLs~~~Gd~i~v~ 39 (73)
T 2ebp_A 27 SLKLKKGDIIDII 39 (73)
T ss_dssp BCCBCSSCEEEEE
T ss_pred ccCCCCCCEEEEE
Confidence 4555555555544
No 184
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.09 E-value=41 Score=19.52 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=5.7
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-+||.|.|
T Consensus 29 eLs~~~Gd~i~v 40 (79)
T 1uhc_A 29 ELSVSANQKLKI 40 (79)
T ss_dssp BCCBCTTCEEEE
T ss_pred ccCCCCCCEEEE
Confidence 444444444444
No 185
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=41 Score=19.14 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=6.2
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|..
T Consensus 25 Lsf~~Gd~i~v~~ 37 (73)
T 2dl7_A 25 LSFPEGAIIRILN 37 (73)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 4444555554443
No 186
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=22.90 E-value=43 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=5.7
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.+.|
T Consensus 22 eLs~~~Gd~i~v 33 (65)
T 2j05_A 22 EISFLKGDMFIV 33 (65)
T ss_dssp BCCBCTTCEEEE
T ss_pred cCcCCCCCEEEE
Confidence 444444444444
No 187
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=53 Score=18.38 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.3
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|-.+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITDM 37 (68)
T ss_dssp CSTTBCCCCSSCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 3446899999999999754
No 188
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=22.86 E-value=42 Score=18.82 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.8
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 19 eLs~~~Gd~i~v~~ 32 (69)
T 1wyx_A 19 ELSFRKGDIMTVLE 32 (69)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCcCCCEEEEeE
Confidence 34455555555543
No 189
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=22.85 E-value=52 Score=17.79 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHhhCCCCCCCEEEEEec
Q psy3865 22 SAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~Gk 41 (107)
+..-.+|.+..||+|.|..+
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 3ngp_A 17 EKSPRELTVKKGDILTLLNS 36 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCccCCCCCEEEEeEe
Confidence 34456899999999999765
No 190
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=22.66 E-value=52 Score=17.86 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=14.8
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.+..+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (64)
T 4f14_A 18 QDEDEVSFRDGDYIVNVQP 36 (64)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred cCCCcCCCCCCCEEEEEEe
Confidence 3445899999999988754
No 191
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=22.63 E-value=39 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.9
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 17 eLs~~~Gd~i~v~~ 30 (58)
T 1zuu_A 17 EITITPGDKISLVA 30 (58)
T ss_dssp BCCBCTTCCEEEEE
T ss_pred cccCCCCCEEEEeE
Confidence 45556666665543
No 192
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=22.63 E-value=17 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=20.2
Q ss_pred EecCHHHHhhCCCCCCCEEEEEecc
Q psy3865 18 RRKESAKMDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 18 ari~~~~m~~Lgl~~GD~V~I~Gkr 42 (107)
++++-+.++++.+|+|.+|-++|+.
T Consensus 85 V~Ldls~l~~~slFPGQIVav~G~N 109 (460)
T 3flo_A 85 VRLDLSQVNELSFFLGQIVAFKGKN 109 (460)
T ss_dssp EEEECTTCCCEEECTTCEEEEEEEC
T ss_pred EEeecccCCceeecCCCEEEEEEEc
Confidence 4455567889999999999999974
No 193
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=22.61 E-value=90 Score=21.69 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=18.5
Q ss_pred cccccCCCeEEEEeCCCCCCccEEEEc
Q psy3865 70 NLRVRLSDVVSLVPCPGIVYGKRIHVL 96 (107)
Q Consensus 70 N~~v~igD~V~V~~~~~~~~a~~V~l~ 96 (107)
|-.+.+||.|.|..+..+..-++-.|.
T Consensus 113 ~n~~kvGD~V~I~EcRPLSKtKrw~Vv 139 (157)
T 2xzm_Q 113 CFSVKEGDILVAGQCRPISKTVRFNAL 139 (157)
T ss_dssp TSCCCTTCEEEEEECCCCSSSCCEEEE
T ss_pred CCCCCCCCEEEEEEcCCCCCcEEEEEE
Confidence 345899999999987555444444443
No 194
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=22.61 E-value=43 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 22 eLs~~~Gd~i~v~~ 35 (67)
T 2o9s_A 22 EMSFRKGERITLLR 35 (67)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 34455555555543
No 195
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=43 Score=18.81 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=6.6
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-+||.+.|-
T Consensus 23 eLs~~~Gd~i~v~ 35 (68)
T 2dmo_A 23 ELQVMPGNIVFVL 35 (68)
T ss_dssp SCCCCTTCEEEEC
T ss_pred CCCCCCCCEEEEE
Confidence 4555555555543
No 196
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=22.54 E-value=42 Score=20.04 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.8
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 35 eLsf~~GDiI~V~ 47 (83)
T 2ke9_A 35 ALNVRAGDVITVL 47 (83)
T ss_dssp BCCBCTTCEEEES
T ss_pred cccccCCCEEEEE
Confidence 3555555555554
No 197
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=22.53 E-value=50 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=14.3
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITDM 33 (58)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCccCCCCCEEEEEEe
Confidence 3346888899999888754
No 198
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=22.48 E-value=43 Score=19.01 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|..
T Consensus 25 eLs~~~Gd~i~v~~ 38 (73)
T 2k9g_A 25 ELTIKEGDIVTLIN 38 (73)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred eeeECCCCEEEEEE
Confidence 34455555555543
No 199
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.40 E-value=43 Score=19.05 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=15.4
Q ss_pred CHHHHhhCCCCCCCEEEEEec
Q psy3865 21 ESAKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~Gk 41 (107)
.+..-.+|.+..||+|.|-.+
T Consensus 19 ~~~~~~eLs~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 19 VGRTARELSFKKGASLLLYQR 39 (72)
T ss_dssp CCSSSSBCCBCTTCEEEEEEE
T ss_pred CcCCCCEeccCCCCEEEEEee
Confidence 344556889999999988754
No 200
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=34 Score=19.78 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.6
Q ss_pred HhhCCCCCCCEEEEEec
Q psy3865 25 MDELNLFRGDTVLLRGK 41 (107)
Q Consensus 25 m~~Lgl~~GD~V~I~Gk 41 (107)
-.+|.+..||+|.|..+
T Consensus 28 ~~eLsf~~Gd~i~v~~~ 44 (76)
T 2csi_A 28 EAELTFCTGDIITVFGE 44 (76)
T ss_dssp TTSCCCCTTCEEEEESS
T ss_pred CCcccCCCCCEEEEeEe
Confidence 56899999999999865
No 201
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.27 E-value=45 Score=18.75 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=7.5
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (68)
T 2dl4_A 23 DLEMRPGDIITLLE 36 (68)
T ss_dssp BCCCCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 35555555555544
No 202
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=22.16 E-value=45 Score=18.60 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=5.8
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.|.|
T Consensus 23 eLs~~~Gd~i~v 34 (68)
T 2dl3_A 23 ELPLQKGDIVYI 34 (68)
T ss_dssp BCCBCTTCEEEE
T ss_pred CccCCCCCEEEE
Confidence 444444554444
No 203
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=22.10 E-value=44 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=8.4
Q ss_pred cccCcccCCeEEEe
Q psy3865 2 DELNLFRGDTVLLR 15 (107)
Q Consensus 2 ~~~~~~~~d~~~~r 15 (107)
+||.|-+||.+.|-
T Consensus 14 ~eLs~~~Gd~i~v~ 27 (73)
T 2kxd_A 14 REVTMKKGDILTLL 27 (73)
T ss_dssp CCCCBCTTCEEEEE
T ss_pred CEeeEcCCCEEEEE
Confidence 35666666666664
No 204
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=22.07 E-value=45 Score=18.71 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=6.4
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 19 eLs~~~Gd~i~v~ 31 (69)
T 1ruw_A 19 ELPLKKGDIVFIS 31 (69)
T ss_dssp BCCBCTTCEEEEE
T ss_pred cccCCCCCEEEEE
Confidence 3445555555554
No 205
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=22.02 E-value=37 Score=19.89 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=8.0
Q ss_pred cccCcccCCeEEEeE
Q psy3865 2 DELNLFRGDTVLLRG 16 (107)
Q Consensus 2 ~~~~~~~~d~~~~rG 16 (107)
+||.|-+||.+.|-.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (80)
T 2i0n_A 25 SLLPFKRNDIITITF 39 (80)
T ss_dssp SSCCBCSSEEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 355555555555543
No 206
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=21.98 E-value=42 Score=18.96 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.1
Q ss_pred hhCCCCCCCEEEEEe
Q psy3865 26 DELNLFRGDTVLLRG 40 (107)
Q Consensus 26 ~~Lgl~~GD~V~I~G 40 (107)
.+|.+..||+|.|..
T Consensus 22 ~eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 22 YEISFEQNEILQVSD 36 (70)
T ss_dssp TBCCBCTTCEEEEEC
T ss_pred CcccCCCCCEEEEEE
Confidence 388899999988864
No 207
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=21.84 E-value=46 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=6.2
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|.
T Consensus 22 Ls~~~Gd~i~v~ 33 (62)
T 1uj0_A 22 LTFKHGELITVL 33 (62)
T ss_dssp CCBCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 445555555554
No 208
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=21.83 E-value=35 Score=28.53 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=16.0
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
+.+++++|..||+|.|+
T Consensus 372 d~i~~~di~iGD~V~V~ 388 (615)
T 3sgi_A 372 SEIKRKGVLIGDTVVIR 388 (615)
T ss_dssp TTTTTTCCCBTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 77899999999999998
No 209
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=21.78 E-value=46 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 24 eLs~~~Gd~i~v~~ 37 (68)
T 2k2m_A 24 ELSVKQRDVLEVLD 37 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cccCCCCCEEEEEE
Confidence 34455555555543
No 210
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=21.74 E-value=47 Score=19.11 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=6.7
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|.
T Consensus 26 eLsf~~Gd~i~v~ 38 (76)
T 2ed1_A 26 ELTFIEGEVIIVT 38 (76)
T ss_dssp BCCCCSSCEEEES
T ss_pred CcCcCCCCEEEEE
Confidence 3455555555554
No 211
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=21.65 E-value=54 Score=17.77 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.9
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|-.+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~ 35 (63)
T 3eg3_A 17 SGDNTLSITKGEKLRVLGY 35 (63)
T ss_dssp CSSSBCCBCTTCEEEEEEE
T ss_pred CCCCccCCCCCCEEEEEEe
Confidence 3445899999999999864
No 212
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=21.62 E-value=55 Score=18.43 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=15.2
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 27 ~~~~eLs~~~Gd~i~v~~~ 45 (73)
T 3h0h_A 27 ITEDDLSFHKGEKFQILNS 45 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCcceEeCCCEEEEEEe
Confidence 3446899999999999764
No 213
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=21.61 E-value=20 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHhhCCCCCCCEEEEE
Q psy3865 22 SAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 22 ~~~m~~Lgl~~GD~V~I~ 39 (107)
.+..++|++..||+|.+.
T Consensus 81 ~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 81 DQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp TCCTTTTTCCTTEEEEEE
T ss_pred CCCHHHcCCCCCCEEEEE
Confidence 467789999999999987
No 214
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=21.56 E-value=1.3e+02 Score=18.79 Aligned_cols=36 Identities=31% Similarity=0.256 Sum_probs=24.0
Q ss_pred cccCcccCCeEEEeEEEecCHHHHhhCCCCCCCEEE
Q psy3865 2 DELNLFRGDTVLLRGKRRKESAKMDELNLFRGDTVL 37 (107)
Q Consensus 2 ~~~~~~~~d~~~~rGiari~~~~m~~Lgl~~GD~V~ 37 (107)
.+.|.-.+-.++-..+..-+++..+.|++.+|+-|.
T Consensus 2 ~~~G~~~~~~vl~~~~~~a~~~ia~~L~l~~~~~v~ 37 (149)
T 2p19_A 2 KNANLDPKTRVLEHRLLAASSAIAEKLGVSAGDEVL 37 (149)
T ss_dssp CTTCCCEEEEEEEEEEEECCHHHHHHHTSCTTCEEE
T ss_pred cccCCCceeEEEEEEEEcCCHHHHHHcCcCCCCEEE
Confidence 344444444444455666788999999999998643
No 215
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=21.56 E-value=46 Score=18.59 Aligned_cols=12 Identities=42% Similarity=0.875 Sum_probs=5.6
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.+.|
T Consensus 23 eLs~~~Gd~i~v 34 (68)
T 2djq_A 23 DLKFNKGDVILL 34 (68)
T ss_dssp CCCCCTTCEEEE
T ss_pred CccCCCCCEEEE
Confidence 444444444444
No 216
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=21.53 E-value=47 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.2
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 17 eLs~~~Gd~i~v~~ 30 (65)
T 2oaw_A 17 EVTMKKGDILTLLN 30 (65)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CCCCCCCCEEEEEE
Confidence 34555555555543
No 217
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.52 E-value=46 Score=19.27 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.0
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-+||.+.|-
T Consensus 33 eLsf~~Gd~i~v~ 45 (78)
T 2ed0_A 33 ELSFQEGAIIYVI 45 (78)
T ss_dssp BCCBCSSCEEEEE
T ss_pred cccccCCCEEEEE
Confidence 4555555555554
No 218
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.44 E-value=1.2e+02 Score=19.64 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=17.8
Q ss_pred EEeEEEecCHHH---HhhCCCCCCCEEEEEecc
Q psy3865 13 LLRGKRRKESAK---MDELNLFRGDTVLLRGKR 42 (107)
Q Consensus 13 ~~rGiari~~~~---m~~Lgl~~GD~V~I~Gkr 42 (107)
.|.++.-.+.+. ++.-.+.+|++|.+.|+-
T Consensus 65 ~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v 97 (136)
T 4gop_B 65 QIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTL 97 (136)
T ss_dssp EEEEEEECC--------CCSCCTTCEEEEEEEE
T ss_pred CEEEEEecccCCcccccccccCCCCEEEEEEEE
Confidence 455555554443 345667899999999863
No 219
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.39 E-value=1e+02 Score=19.42 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=21.7
Q ss_pred ccccCCCeEEEEeCCCCCC-ccEEEEccCCccc
Q psy3865 71 LRVRLSDVVSLVPCPGIVY-GKRIHVLPIDDSV 102 (107)
Q Consensus 71 ~~v~igD~V~V~~~~~~~~-a~~V~l~P~~dti 102 (107)
--.++||.|.|+-. ++.. .+++.|...+..+
T Consensus 66 ~~~~~Gd~V~vkV~-~vd~~~~~i~Lslk~~~l 97 (119)
T 1wi5_A 66 AKLKVGQYLNCIVE-KVKGNGGVVSLSVGHSEV 97 (119)
T ss_dssp CCCCTTCEEEEEEE-ECCTTSCEEEEECCCCCS
T ss_pred CEeCCCCEEEEEEE-EEeCCCCEEEEEEchhhc
Confidence 35889999999864 4433 4678888765544
No 220
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=21.31 E-value=47 Score=18.61 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=7.9
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 22 eLs~~~Gd~i~v~~ 35 (71)
T 2jt4_A 22 ELTIKSGDKVYILD 35 (71)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cccCCCCCEEEEEE
Confidence 45555666666554
No 221
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=21.20 E-value=57 Score=18.21 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~ 43 (72)
T 4glm_A 25 LEPNELDFEVGDKIRILAT 43 (72)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred CCCCcCCCCCCCEEEEEEc
Confidence 4446899999999999764
No 222
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.15 E-value=48 Score=19.18 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=6.5
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 23 eLs~~~Gd~i~v~ 35 (80)
T 1ue9_A 23 QLSLAPGQLILIL 35 (80)
T ss_dssp BCCCCTTCEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 3445555555554
No 223
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.12 E-value=42 Score=19.17 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (77)
T 2d8j_A 23 DLSFRAGDKLQVLD 36 (77)
T ss_dssp BCCBCTTCCEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 34455555555543
No 224
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=21.11 E-value=48 Score=18.52 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.7
Q ss_pred hCCCCCCCEEEEE
Q psy3865 27 ELNLFRGDTVLLR 39 (107)
Q Consensus 27 ~Lgl~~GD~V~I~ 39 (107)
+|.+..||+|.|-
T Consensus 23 eLs~~~Gd~i~v~ 35 (70)
T 2cuc_A 23 ELDLQKGEGIRVL 35 (70)
T ss_dssp BCCBCTTCEEEEE
T ss_pred cCCCCCCCEEEEE
Confidence 3445555555554
No 225
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=44 Score=18.77 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.5
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|-.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (71)
T 2cre_A 24 LAFSRGDILTILE 36 (71)
T ss_dssp CCCCSSCCEEEEE
T ss_pred CCCCCCCEEEEeE
Confidence 4455555555543
No 226
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=21.07 E-value=46 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.1
Q ss_pred cccCcccCCeEEEe
Q psy3865 2 DELNLFRGDTVLLR 15 (107)
Q Consensus 2 ~~~~~~~~d~~~~r 15 (107)
+||.|-+||++.|-
T Consensus 26 ~ELsf~~GD~I~V~ 39 (90)
T 3o5z_A 26 EDLELLPGDVLVVS 39 (90)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CccCCcCCCEEEEE
Confidence 46677777776653
No 227
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.07 E-value=47 Score=19.77 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=8.2
Q ss_pred cccCcccCCeEEEe
Q psy3865 2 DELNLFRGDTVLLR 15 (107)
Q Consensus 2 ~~~~~~~~d~~~~r 15 (107)
+||.|-+||.|.|-
T Consensus 33 ~eLsf~~Gd~i~v~ 46 (88)
T 2dbk_A 33 TALALEVGDIVKVT 46 (88)
T ss_dssp SBCCBCTTCEEEEE
T ss_pred CcccCCCCCEEEEE
Confidence 35666666666654
No 228
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=21.06 E-value=57 Score=18.17 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|..+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (69)
T 4esr_A 18 NRSDELTIHRGDIIRVFFK 36 (69)
T ss_dssp CSTTBCCBCTTCEEEEEEE
T ss_pred CCcCcCCCCCCCEEEEEEe
Confidence 3446899999999999754
No 229
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=20.93 E-value=58 Score=18.58 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHHhhCCCCCCCEEEEEec
Q psy3865 23 AKMDELNLFRGDTVLLRGK 41 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~Gk 41 (107)
..-.+|.+..||+|.|-.+
T Consensus 16 ~~~~ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 16 QQDQELDIKKNERLWLLDD 34 (67)
T ss_dssp SSTTSCCBCTTCEEEEEEC
T ss_pred CCCCccccCCCCEEEEEec
Confidence 3446899999999999764
No 230
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.92 E-value=46 Score=20.02 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=7.6
Q ss_pred cccCcccCCeEEE
Q psy3865 2 DELNLFRGDTVLL 14 (107)
Q Consensus 2 ~~~~~~~~d~~~~ 14 (107)
+||.|-+||.+.|
T Consensus 20 ~eLsf~~Gd~i~v 32 (93)
T 1uff_A 20 DEMSFNSGDIIQV 32 (93)
T ss_dssp SCCCBCTTCEEEE
T ss_pred CCcCCCCCCEEEE
Confidence 3566666666655
No 231
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=47 Score=19.93 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=7.4
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 32 eLs~~~Gd~i~v~~ 45 (94)
T 2e5k_A 32 ELELVPGDFIFMSP 45 (94)
T ss_dssp BCCBCTTCEEEECG
T ss_pred CcCCCCCCEEEEEE
Confidence 35555555555544
No 232
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=20.92 E-value=42 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=24.9
Q ss_pred ccCCeEEEeEEEecCHHHH----------hhCCCCCCCEEEEE
Q psy3865 7 FRGDTVLLRGKRRKESAKM----------DELNLFRGDTVLLR 39 (107)
Q Consensus 7 ~~~d~~~~rGiari~~~~m----------~~Lgl~~GD~V~I~ 39 (107)
.+|..|.|....-+..-.+ ..|.+..||.|.+.
T Consensus 32 ~~~~~v~v~~~~~~~~~~~~~~~~~g~~~p~i~V~~GD~V~~~ 74 (154)
T 2cal_A 32 YSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVT 74 (154)
T ss_dssp CCSSEEEEEEEESCTTSCSSCEEETTEESCEEEECTTCEEEEE
T ss_pred ecCCEEEEEEEEcccCCccccccccCCCCCEEEEeCCCEEEEE
Confidence 4577788887776655555 67899999999876
No 233
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.91 E-value=41 Score=18.95 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=7.0
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (70)
T 2da9_A 23 ELTIKEGDIVTLIN 36 (70)
T ss_dssp BCCCCTTEEEEEEE
T ss_pred EeeEcCCCEEEEEE
Confidence 34455555555543
No 234
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.90 E-value=49 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=6.7
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|-.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (65)
T 1w1f_A 24 LSFKKGEKMKVLE 36 (65)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 4555555555543
No 235
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=50 Score=18.45 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=7.1
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (68)
T 1x2p_A 23 QLSFLRGEKILILR 36 (68)
T ss_dssp BCCCCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 34555555555543
No 236
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.88 E-value=43 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=17.2
Q ss_pred CHHHHhhCCCCCCCEEEEE
Q psy3865 21 ESAKMDELNLFRGDTVLLR 39 (107)
Q Consensus 21 ~~~~m~~Lgl~~GD~V~I~ 39 (107)
+.+.++++++..||+|.|+
T Consensus 360 N~~~I~~~di~iGD~V~V~ 378 (586)
T 4glx_A 360 NADEIERLGLRIGDKVVIR 378 (586)
T ss_dssp CHHHHHHHTCEETCEEEEE
T ss_pred CHHHHHhcCCCcCCEEEEE
Confidence 4488999999999999998
No 237
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=20.86 E-value=65 Score=20.63 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=9.2
Q ss_pred ccCCCeEEEEeCCCCCCccEEE
Q psy3865 73 VRLSDVVSLVPCPGIVYGKRIH 94 (107)
Q Consensus 73 v~igD~V~V~~~~~~~~a~~V~ 94 (107)
|..||.+.|.+. +...++.|.
T Consensus 14 V~~Gd~i~vekl-~~~~G~~v~ 34 (101)
T 3v2d_V 14 VEPGLKLRVEKL-DAEPGATVE 34 (101)
T ss_dssp ECTTCEEEESCC-SCCTTCEEE
T ss_pred EeCCCEEEECCc-CCCCCCEEE
Confidence 444444444443 334444443
No 238
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=20.83 E-value=50 Score=18.39 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=12.2
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|..
T Consensus 24 ~Lsf~~Gd~i~v~~ 37 (67)
T 3rnj_A 24 LLSFKEGDLITLLV 37 (67)
T ss_dssp BCCBCTTCEEEECS
T ss_pred CccCCCCCEEEEee
Confidence 49999999999864
No 239
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=20.77 E-value=37 Score=19.20 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=5.7
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|-
T Consensus 18 Ls~~~Gd~i~v~ 29 (65)
T 2fei_A 18 LELKVGDIIDIN 29 (65)
T ss_dssp CCCCTTCEEECC
T ss_pred cCCCCCCEEEEE
Confidence 444445554443
No 240
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.66 E-value=74 Score=19.34 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=15.4
Q ss_pred EecCHH-HHhhCCCCCCCEEEEE
Q psy3865 18 RRKESA-KMDELNLFRGDTVLLR 39 (107)
Q Consensus 18 ari~~~-~m~~Lgl~~GD~V~I~ 39 (107)
...+|. ...+.|+.+||+|.=-
T Consensus 42 ~~~~pas~A~~aGl~~GDvI~~i 64 (105)
T 2i4s_A 42 SPGKDPVLFESIGLQDGDMAVAL 64 (105)
T ss_dssp EECSCTHHHHHHTCCTTCEEEEE
T ss_pred ecCCCCCHHHHcCCCCCCEEEEE
Confidence 344554 4567899999998644
No 241
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.50 E-value=42 Score=18.80 Aligned_cols=12 Identities=50% Similarity=0.612 Sum_probs=5.8
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.+.|
T Consensus 23 eLs~~~Gd~i~v 34 (70)
T 2ct3_A 23 ELELREGDRVDV 34 (70)
T ss_dssp BCCBCTTEEEEE
T ss_pred CccCCCCCEEEE
Confidence 444445554444
No 242
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.26 E-value=51 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=6.1
Q ss_pred CCCCCCCEEEEEe
Q psy3865 28 LNLFRGDTVLLRG 40 (107)
Q Consensus 28 Lgl~~GD~V~I~G 40 (107)
|.+..||+|.|..
T Consensus 34 Ls~~~Gd~i~v~~ 46 (81)
T 1x43_A 34 LSLLADEVITVFS 46 (81)
T ss_dssp CCCCTTCEEEEEC
T ss_pred CCCCCCCEEEEEE
Confidence 4444455544443
No 243
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.26 E-value=50 Score=19.00 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=6.3
Q ss_pred CCCCCCCEEEEE
Q psy3865 28 LNLFRGDTVLLR 39 (107)
Q Consensus 28 Lgl~~GD~V~I~ 39 (107)
|.+..||+|.|-
T Consensus 26 Ls~~~Gd~i~vl 37 (75)
T 2egc_A 26 AGFQEGVSMEVL 37 (75)
T ss_dssp CCBCTTCEEEEC
T ss_pred CCCCCCCEEEEE
Confidence 445555555554
No 244
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.15 E-value=45 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=6.1
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.|.|
T Consensus 26 eLs~~~Gd~i~v 37 (76)
T 1ujy_A 26 ELSVCKGDIIYV 37 (76)
T ss_dssp SCCBCSSCCEEE
T ss_pred cccCCCCCEEEE
Confidence 455555555544
No 245
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.13 E-value=52 Score=18.54 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=6.9
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-+||.+.|-
T Consensus 24 eLs~~~Gd~i~v~ 36 (69)
T 1uhf_A 24 DLTFTEGEEILVT 36 (69)
T ss_dssp BCCBCTTCEEEEC
T ss_pred ccCCCCCCEEEEE
Confidence 4555555555553
No 246
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=20.11 E-value=50 Score=20.04 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=7.3
Q ss_pred hCCCCCCCEEEEEe
Q psy3865 27 ELNLFRGDTVLLRG 40 (107)
Q Consensus 27 ~Lgl~~GD~V~I~G 40 (107)
+|.+..||+|.|-.
T Consensus 45 ELsf~~GD~I~Vl~ 58 (89)
T 2rf0_A 45 ELTLRRGDRVQVLS 58 (89)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccccCCCCEEEEEe
Confidence 34555555555544
No 247
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.08 E-value=51 Score=18.97 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=6.6
Q ss_pred ccCcccCCeEEEe
Q psy3865 3 ELNLFRGDTVLLR 15 (107)
Q Consensus 3 ~~~~~~~d~~~~r 15 (107)
||.|-.||.|.|-
T Consensus 23 eLs~~~Gd~i~v~ 35 (78)
T 2yuo_A 23 ELGFRKNDIITII 35 (78)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CccCCCCCEEEEE
Confidence 4555555555543
No 248
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=20.05 E-value=51 Score=19.31 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=5.7
Q ss_pred ccCcccCCeEEE
Q psy3865 3 ELNLFRGDTVLL 14 (107)
Q Consensus 3 ~~~~~~~d~~~~ 14 (107)
||.|-.||.+.|
T Consensus 21 eLs~~~Gd~i~v 32 (79)
T 3cqt_A 21 DLSFHKGEKFQI 32 (79)
T ss_dssp BCCBCTTCEEEE
T ss_pred cCCCCCCCEEEE
Confidence 444444444444
No 249
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=20.03 E-value=30 Score=20.76 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=12.8
Q ss_pred HHHhhCCCCCCCEEEEE
Q psy3865 23 AKMDELNLFRGDTVLLR 39 (107)
Q Consensus 23 ~~m~~Lgl~~GD~V~I~ 39 (107)
....+||+..||.+.+.
T Consensus 62 ~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 62 KSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CTTTTTCCCTTCCEEC-
T ss_pred CCHHHcCCCCCCEEEEe
Confidence 35678899999998763
Done!