RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3865
         (107 letters)



>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
          domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 86

 Score = 84.8 bits (210), Expect = 9e-24
 Identities = 51/71 (71%), Positives = 58/71 (81%)

Query: 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVR 74
                   KMDEL LFRGDTVLL+GK+R+E+VCIVLSDDTC DEKIRMNRV+RNNLRVR
Sbjct: 16 NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVR 75

Query: 75 LSDVVSLVPCP 85
          L DV+S+ PCP
Sbjct: 76 LGDVISIQPCP 86


>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
          {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 91

 Score = 65.2 bits (159), Expect = 4e-16
 Identities = 14/70 (20%), Positives = 26/70 (37%)

Query: 15 RGKRRKESAKMDELNLFRGDTVLLRGKRRKESVCIVLSDDTCPDEKIRMNRVMRNNLRVR 74
            + R + +    L+   GD V +   R+          +      +R++ VMRNN    
Sbjct: 21 MSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGAS 80

Query: 75 LSDVVSLVPC 84
          + D V +   
Sbjct: 81 IGDKVKVRKV 90


>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2,
           P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 16/21 (76%), Positives = 20/21 (95%)

Query: 87  IVYGKRIHVLPIDDSVQGLTG 107
           + YGKRIHVLPIDD+V+G+TG
Sbjct: 2   VKYGKRIHVLPIDDTVEGITG 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.413 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 390,025
Number of extensions: 15537
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)