BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3866
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28ES8|CTU2_XENTR Cytoplasmic tRNA 2-thiolation protein 2 OS=Xenopus tropicalis
GN=ctu2 PE=2 SV=1
Length = 516
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLNPNF 63
P +KVL+AFSG SS A++ +QEGM + K++ F ++ID+G+ +S + N
Sbjct: 68 PGEKVLLAFSGGPSSSAMVQQVQEGMSRDAPKKLRFVPGILFIDEGTTCGMSHEERQQNM 127
Query: 64 GSV 66
V
Sbjct: 128 SEV 130
>sp|Q6DC53|CTU2_DANRE Cytoplasmic tRNA 2-thiolation protein 2 OS=Danio rerio GN=ctu2 PE=2
SV=1
Length = 501
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
PQ+KVL+A SG +S +L +QEG+ + K++ F +YIDDG
Sbjct: 70 PQEKVLLAVSGGAASCTMLSQVQEGLSRDAPKKLRFMPGIVYIDDG 115
>sp|Q32NV1|CTU2B_XENLA Cytoplasmic tRNA 2-thiolation protein 2 B OS=Xenopus laevis
GN=ctu2-b PE=2 SV=2
Length = 512
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLNPNF 63
P +KVL+A+SG SS A++ +QEG+ + K++ F ++ID+G+ +S +
Sbjct: 68 PGEKVLLAYSGGPSSSAMVRQVQEGLSRDAPKKLRFVPGILFIDEGTACGMSWEERQQIL 127
Query: 64 GSVC 67
+C
Sbjct: 128 SEIC 131
>sp|Q08B12|CTU2A_XENLA Cytoplasmic tRNA 2-thiolation protein 2 A OS=Xenopus laevis
GN=ctu2-a PE=2 SV=1
Length = 512
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLNPNF 63
P +KVL+A+SG SS A++ +QEG+ + K++ F ++ID+G+ +S +
Sbjct: 68 PGEKVLLAYSGGPSSSAMVRQVQEGLSRDAPKKLRFVPGILFIDEGTACGMSWEERQQIL 127
Query: 64 GSVC 67
+C
Sbjct: 128 SEIC 131
>sp|Q2VPK5|CTU2_HUMAN Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2
PE=1 SV=1
Length = 515
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLN 60
++ P +KVL+A+SG SS +++ + EG+ S KR+ F I++D+G+ S + +
Sbjct: 68 LIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERS 127
Query: 61 PNFGSVCP 68
V P
Sbjct: 128 KTLAEVKP 135
>sp|Q3SZG9|CTU2_BOVIN Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos taurus GN=CTU2 PE=2
SV=1
Length = 501
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50
++ P +KVL+A+SG SS +++ + EG+ S KR+ F +YID+G+
Sbjct: 68 LIFPGEKVLLAWSGGPSSSSMVWQVLEGLSRDSAKRLRFVPGVVYIDEGA 117
>sp|A1KU93|TTCA_NEIMF tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=ttcA PE=3 SV=1
Length = 319
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ QL + I F + A+ +D
Sbjct: 31 MIEPDDKIMVCLSGGKDSYALLDILR---QLQASAPIDFELVAVNLD 74
>sp|Q9JZJ6|TTCA_NEIMB tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ttcA PE=1
SV=1
Length = 319
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ QL + I F + A+ +D
Sbjct: 31 MIEPDDKIMVCLSGGKDSYALLDILR---QLQASAPIDFQLVAVNLD 74
>sp|Q55EX7|CTU2_DICDI Cytoplasmic tRNA 2-thiolation protein 2 OS=Dictyostelium discoideum
GN=ctu2 PE=3 SV=1
Length = 523
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52
R +K+LVA SG S LL LL++ + S ++ + ++ID+ SI+
Sbjct: 121 RDAEKLLVALSGGTCSSMLLELLKQCTEGSGKAKMFLDIKCVHIDESSIT 170
>sp|A9LZH0|TTCA_NEIM0 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
meningitidis serogroup C (strain 053442) GN=ttcA PE=3
SV=2
Length = 319
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ QL + I F + A+ +D
Sbjct: 31 MIEPGDKIMVCLSGGKDSYALLDILR---QLQASAPIDFELVAVNLD 74
>sp|Q8XHL1|TILS_CLOPE tRNA(Ile)-lysidine synthase OS=Clostridium perfringens (strain 13
/ Type A) GN=tilS PE=3 SV=1
Length = 469
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQL 31
M++ DKVLVA SG S+ LLH+L E +L
Sbjct: 14 MIKSGDKVLVALSGGPDSVCLLHILSELREL 44
>sp|Q2IPE3|TTCA_ANADE tRNA 2-thiocytidine biosynthesis protein TtcA OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=ttcA PE=3 SV=1
Length = 290
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
D+++VA SG S LLHLL M+L I F + A+ +D G
Sbjct: 29 DRIMVAVSGGKDSYTLLHLL---MRLRERAPIDFDLVAVNLDQG 69
>sp|B8JEH9|TTCA_ANAD2 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ttcA PE=3
SV=1
Length = 291
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
D+++VA SG S LLHLL M+L I F + A+ +D G
Sbjct: 29 DRIMVAVSGGKDSYTLLHLL---MRLRERAPIDFDLVAVNLDQG 69
>sp|B4UF77|TTCA_ANASK tRNA 2-thiocytidine biosynthesis protein TtcA OS=Anaeromyxobacter
sp. (strain K) GN=ttcA PE=3 SV=1
Length = 291
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
D+++VA SG S LLHLL M+L I F + A+ +D G
Sbjct: 29 DRIMVAVSGGKDSYTLLHLL---MRLRERAPIDFDLVAVNLDQG 69
>sp|Q0TMI0|TILS_CLOP1 tRNA(Ile)-lysidine synthase OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=tilS PE=3 SV=2
Length = 469
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQL 31
M++ DKVLVA SG S+ LLH+L E +L
Sbjct: 14 MIKNGDKVLVALSGGPDSVCLLHILSELREL 44
>sp|Q6AJ19|TILS_DESPS tRNA(Ile)-lysidine synthase OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=tilS PE=3 SV=1
Length = 471
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
++ DK++V SG S+ALLH+L E + L + AIYID G
Sbjct: 25 LKSGDKIIVGVSGGADSIALLHILTE-LNLD------LQLIAIYIDHG 65
>sp|B0X911|CTU2_CULQU Cytoplasmic tRNA 2-thiolation protein 2 OS=Culex quinquefasciatus
GN=CPIJ015900 PE=3 SV=1
Length = 425
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53
++R +VLV FSGS ++ +L +++ G+Q S K++ +++ + + +
Sbjct: 77 IVRRGSRVLVVFSGSAENVVMLDMIRYGLQQESFKKLRIEPVVVFVSEDHVGR 129
>sp|Q3BMF4|TTCA_XANC5 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ttcA PE=3
SV=2
Length = 305
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DKV+V SG S LL +L +QL + FS+ A+ +D
Sbjct: 47 MIAPGDKVMVCLSGGKDSYTLLDML---LQLQRKAPVPFSLVAVNLD 90
>sp|Q82VP4|TILS_NITEU tRNA(Ile)-lysidine synthase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=tilS PE=3 SV=1
Length = 458
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 11/51 (21%)
Query: 2 MRPQDKVLVAFSGSHSSMALLHLL---QEGMQLSSHKRILFSVCAIYIDDG 49
+RP D++ VA SG S+ LLHLL E MQL V A++++ G
Sbjct: 24 VRPGDRLTVALSGGVDSVVLLHLLTTFSESMQL--------EVSAVHVEHG 66
>sp|A7H8W2|TTCA_ANADF tRNA 2-thiocytidine biosynthesis protein TtcA OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=ttcA PE=3 SV=1
Length = 303
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
D+++VA SG S LLH+L M+L I F + A+ +D G
Sbjct: 42 DRIMVAVSGGKDSYTLLHVL---MRLRERAPIDFDLVAVNLDQG 82
>sp|Q2JRN8|TILS_SYNJA tRNA(Ile)-lysidine synthase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=tilS PE=3 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQE 27
++RP ++LVAFSG S +LL +L++
Sbjct: 20 LLRPGQRLLVAFSGGQDSFSLLQILRD 46
>sp|Q5F956|TTCA_NEIG1 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=ttcA PE=3
SV=1
Length = 319
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ +L + I F + A+ +D
Sbjct: 31 MIEPGDKIMVCLSGGKDSYALLDILR---RLQASAPIDFELVAVNLD 74
>sp|B4RMM2|TTCA_NEIG2 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
gonorrhoeae (strain NCCP11945) GN=ttcA PE=3 SV=1
Length = 319
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ +L + I F + A+ +D
Sbjct: 31 MIEPGDKIMVCLSGGKDSYALLDILR---RLQASAPIDFELVAVNLD 74
>sp|B2W6W8|CTU2_PYRTR Cytoplasmic tRNA 2-thiolation protein 2 OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=ncs2 PE=3 SV=1
Length = 380
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 5 QDKVLVAFSGSHSSMALLHLL--QEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLN 60
Q +VLV S SS+ LLH+L + Q S R F++ A+YI+D S +++ L+
Sbjct: 59 QPRVLVPLSFGISSVTLLHVLDLHQRTQKSKTGRTGFNISAVYIEDPEQSIMAEDLLD 116
>sp|Q8YAC7|TILS_LISMO Bifunctional protein TilS/HprT OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=tilS/hprT PE=3
SV=1
Length = 648
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLL 25
++R DK+LVA SG S+ALLH L
Sbjct: 17 LIRSDDKLLVAVSGGPDSLALLHFL 41
>sp|Q724J4|TILS_LISMF Bifunctional protein TilS/HprT OS=Listeria monocytogenes serotype
4b (strain F2365) GN=tilS/hprT PE=3 SV=1
Length = 648
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLL 25
++R DK+LVA SG S+ALLH L
Sbjct: 17 LIRSDDKLLVAVSGGPDSLALLHFL 41
>sp|A0NEF7|CTU2_ANOGA Cytoplasmic tRNA 2-thiolation protein 2 OS=Anopheles gambiae
GN=AGAP005651 PE=3 SV=2
Length = 417
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 35/59 (59%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKL 59
++R +VL+ +G +++ LL +++ G++ + K++ +Y+DD + S+++L
Sbjct: 73 IVRRGSRVLIILTGEPANVTLLDMVRFGLEQDAFKQLRIVPVLLYVDDDFVGNTSEARL 131
>sp|A1IS67|TTCA_NEIMA tRNA 2-thiocytidine biosynthesis protein TtcA OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ttcA PE=3 SV=1
Length = 319
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L+ +L + I F + A+ +D
Sbjct: 31 MIEPGDKIMVCLSGGKDSYALLDILR---RLQASAPIDFQLVAVNLD 74
>sp|Q8P3H2|TTCA_XANCP tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB
528 / LMG 568) GN=ttcA PE=3 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DKV+V SG S LL +L +QL + F++ A+ +D
Sbjct: 45 MIAPGDKVMVCLSGGKDSYTLLDML---LQLQRSAPVPFTLVAVNLD 88
>sp|B0RYY8|TTCA_XANCB tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ttcA PE=3
SV=2
Length = 300
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DKV+V SG S LL +L +QL + F++ A+ +D
Sbjct: 45 MIAPGDKVMVCLSGGKDSYTLLDML---LQLQRSAPVPFTLVAVNLD 88
>sp|Q4UNZ5|TTCA_XANC8 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ttcA PE=3
SV=1
Length = 300
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DKV+V SG S LL +L +QL + F++ A+ +D
Sbjct: 45 MIAPGDKVMVCLSGGKDSYTLLDML---LQLQRSAPVPFTLVAVNLD 88
>sp|A2SD77|TTCA_METPP tRNA 2-thiocytidine biosynthesis protein TtcA OS=Methylibium
petroleiphilum (strain PM1) GN=ttcA PE=3 SV=1
Length = 313
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ P DK++V SG S ALL +L + L I FS+ A+ +D
Sbjct: 42 MIEPGDKLMVCVSGGKDSYALLDIL---LNLQQRAPIDFSLVAVNLD 85
>sp|Q67JG9|TILS_SYMTH tRNA(Ile)-lysidine synthase OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=tilS PE=3 SV=1
Length = 482
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLL 25
M+ P D+V+VA SG S+AL H+L
Sbjct: 16 MLEPGDRVIVAVSGGPDSLALTHVL 40
>sp|Q92F56|TILS_LISIN Bifunctional protein TilS/HprT OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=tilS/hprT PE=3 SV=1
Length = 648
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLL 25
++R DK+LVA SG S ALLH L
Sbjct: 17 LIRSDDKLLVAVSGGPDSFALLHFL 41
>sp|Q74GW7|TTCA_GEOSL tRNA 2-thiocytidine biosynthesis protein TtcA OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=ttcA PE=3 SV=1
Length = 282
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
++R D++ VA SG S LLH+L EG L + + + A+ ID G
Sbjct: 50 LIRDGDRIAVAVSGGKDSYTLLHIL-EG--LRRRAPVKYELVAVTIDSG 95
>sp|Q88Z33|TILS_LACPL tRNA(Ile)-lysidine synthase OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=tilS PE=3 SV=1
Length = 448
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQ 26
++ PQ V+VA S SM LLHLLQ
Sbjct: 16 LLSPQQTVVVAVSTGVDSMVLLHLLQ 41
>sp|Q1QZ76|TTCA_CHRSD tRNA 2-thiocytidine biosynthesis protein TtcA OS=Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
13768) GN=ttcA PE=3 SV=1
Length = 284
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+R DKV+V SG S +L +L M L + + F + A+ +D
Sbjct: 32 MIRDGDKVMVCLSGGKDSYTMLDIL---MNLQRNAPVAFELVAVNLD 75
>sp|Q1CZQ8|TTCA_MYXXD tRNA 2-thiocytidine biosynthesis protein TtcA OS=Myxococcus
xanthus (strain DK 1622) GN=ttcA PE=3 SV=1
Length = 284
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
D+++V SG S +LHLL+E L + F + A+ +D G
Sbjct: 33 DRIMVGVSGGKDSYTMLHLLRE---LQRRAPVKFELLAVNLDQG 73
>sp|A6T3N1|TTCA_JANMA tRNA 2-thiocytidine biosynthesis protein TtcA
OS=Janthinobacterium sp. (strain Marseille) GN=ttcA
PE=3 SV=1
Length = 317
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ DKV+V SG S ALL +L M L I F + A+ +D
Sbjct: 51 MIEDGDKVMVCLSGGKDSYALLDIL---MTLRERAPIKFDIVAVNLD 94
>sp|Q5P2I9|TILS_AROAE tRNA(Ile)-lysidine synthase OS=Aromatoleum aromaticum (strain
EbN1) GN=tilS PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYI 46
P+ ++ VAFSG S LLHLL R F +CA ++
Sbjct: 9 PRQRLCVAFSGGADSTTLLHLLAR-----LRPRFGFDLCAAHV 46
>sp|Q0UDH1|CTU2_PHANO Cytoplasmic tRNA 2-thiolation protein 2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=NCS2 PE=3
SV=1
Length = 382
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 5 QDKVLVAFSGSHSSMALLHLLQEGM--QLSSHKRILFSVCAIYIDDGSISQVSKSKLNPN 62
Q K+L+ S SS LLH+L + Q S R F++ + +D+GS+ K+
Sbjct: 62 QRKILLPLSHGVSSTTLLHILDLHLNTQRSKTNRTGFAISVLVVDEGSLDPARLDKVRER 121
Query: 63 FGS 65
+ +
Sbjct: 122 YAN 124
>sp|O65628|CTU2_ARATH Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana
GN=CTU2 PE=2 SV=3
Length = 458
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHK 35
M+ P D VLVAFSG SS L + E +Q+ + K
Sbjct: 81 MITPSDNVLVAFSGGSSSRVSLQFVHE-LQIKALK 114
>sp|A5GBX4|TTCA_GEOUR tRNA 2-thiocytidine biosynthesis protein TtcA OS=Geobacter
uraniireducens (strain Rf4) GN=ttcA PE=3 SV=1
Length = 252
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
++ D++ VA SG S LLH+L+ L + + + AI ID G
Sbjct: 25 LIEEGDRIAVAVSGGKDSYTLLHILE---TLRKRAPVRYEIMAINIDSG 70
>sp|Q82UJ4|TTCA_NITEU tRNA 2-thiocytidine biosynthesis protein TtcA OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=ttcA PE=3
SV=1
Length = 314
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ D+V+V SG S ALL +L+ L +H + F + A+ +D
Sbjct: 34 MIEKGDRVMVCLSGGKDSYALLDILR---NLQAHAPLDFELIAVNLD 77
>sp|A4G9W3|TTCA_HERAR tRNA 2-thiocytidine biosynthesis protein TtcA OS=Herminiimonas
arsenicoxydans GN=ttcA PE=3 SV=1
Length = 318
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ DK++V SG S ALL +L M L I F + A+ +D
Sbjct: 53 MIEDGDKIMVCLSGGKDSYALLDIL---MTLRERAPIKFDIVAVNLD 96
>sp|Q2QMW0|CTU2_ORYSJ Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp.
japonica GN=CTU2 PE=2 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQE 27
M+RP D VL+AFSG +S L + E
Sbjct: 87 MVRPTDSVLLAFSGGPASRVALQFIHE 113
>sp|A2ZM73|CTU2_ORYSI Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp.
indica GN=CTU2 PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQE 27
M+RP D VL+AFSG +S L + E
Sbjct: 87 MVRPTDSVLLAFSGGPASRVALQFIHE 113
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKR 36
Q+KV+ F+ + S AL++ + EG++L S R
Sbjct: 119 QEKVMAKFNQTQSQQALVNSINEGIKLQSQNR 150
>sp|Q0AI06|TTCA_NITEC tRNA 2-thiocytidine biosynthesis protein TtcA OS=Nitrosomonas
eutropha (strain C91) GN=ttcA PE=3 SV=1
Length = 313
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M+ D+++V SG S ALL +L+ L +H + F + A+ +D
Sbjct: 34 MIESGDRIMVCLSGGKDSYALLDILR---NLQAHAPLDFELIAVNLD 77
>sp|Q97EB0|TILS_CLOAB tRNA(Ile)-lysidine synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=tilS PE=3 SV=1
Length = 461
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
M++ D+++VA SG S+ LLH+L + S+CA +++
Sbjct: 14 MIKQNDRIVVAVSGGPDSICLLHIL-----FKLKDKFNTSICAAHVN 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,574,193
Number of Sequences: 539616
Number of extensions: 592183
Number of successful extensions: 1657
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 56
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)