Query psy3866
Match_columns 70
No_of_seqs 120 out of 1160
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:26:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10696 tRNA 2-thiocytidine b 99.5 6.4E-14 1.4E-18 96.9 6.8 51 1-55 25-75 (258)
2 PF01171 ATP_bind_3: PP-loop f 99.5 1.1E-13 2.3E-18 91.1 5.3 45 7-57 1-45 (182)
3 PRK10660 tilS tRNA(Ile)-lysidi 99.4 3E-13 6.5E-18 100.0 4.5 51 2-57 12-62 (436)
4 COG0037 MesJ tRNA(Ile)-lysidin 99.4 7.9E-13 1.7E-17 91.4 6.0 43 5-55 21-63 (298)
5 TIGR02432 lysidine_TilS_N tRNA 99.2 1E-11 2.2E-16 81.3 3.2 40 7-51 1-40 (189)
6 cd01993 Alpha_ANH_like_II This 99.2 3.2E-11 6.9E-16 77.9 5.1 42 7-51 1-42 (185)
7 cd01992 PP-ATPase N-terminal d 99.1 1.2E-10 2.7E-15 75.5 3.5 39 7-50 1-39 (185)
8 cd01713 PAPS_reductase This do 99.0 2.9E-10 6.3E-15 71.3 4.2 38 7-50 1-38 (173)
9 TIGR00884 guaA_Cterm GMP synth 99.0 3.1E-10 6.7E-15 81.3 4.6 40 5-52 16-55 (311)
10 cd01712 ThiI ThiI is required 99.0 7.3E-10 1.6E-14 72.3 5.3 36 7-51 1-36 (177)
11 PRK00919 GMP synthase subunit 99.0 8.5E-10 1.8E-14 79.1 5.8 40 5-52 21-60 (307)
12 cd01997 GMP_synthase_C The C-t 99.0 5.6E-10 1.2E-14 79.6 4.0 38 7-52 1-38 (295)
13 PRK14665 mnmA tRNA-specific 2- 98.9 1.8E-09 4E-14 78.7 6.1 41 1-50 1-41 (360)
14 cd01986 Alpha_ANH_like Adenine 98.9 2.2E-09 4.7E-14 64.9 4.3 35 8-51 1-35 (103)
15 PRK05253 sulfate adenylyltrans 98.9 3.3E-09 7.2E-14 75.8 5.2 42 4-50 26-67 (301)
16 TIGR00268 conserved hypothetic 98.9 2.6E-09 5.5E-14 73.8 3.9 40 2-50 9-48 (252)
17 cd01996 Alpha_ANH_like_III Thi 98.8 4.5E-09 9.7E-14 66.8 4.4 37 7-51 3-39 (154)
18 cd01990 Alpha_ANH_like_I This 98.8 3.7E-09 8.1E-14 70.0 4.1 36 8-51 1-36 (202)
19 PRK02090 phosphoadenosine phos 98.8 3.9E-09 8.5E-14 72.6 4.2 37 5-50 40-76 (241)
20 PRK00074 guaA GMP synthase; Re 98.8 6.1E-09 1.3E-13 78.6 5.3 40 5-52 215-254 (511)
21 cd01995 ExsB ExsB is a transcr 98.8 8.1E-09 1.8E-13 66.7 5.1 35 7-50 1-35 (169)
22 PRK13820 argininosuccinate syn 98.8 8.8E-09 1.9E-13 76.1 5.9 38 5-50 2-40 (394)
23 COG1606 ATP-utilizing enzymes 98.8 6E-09 1.3E-13 73.9 4.4 43 3-53 15-57 (269)
24 PF01507 PAPS_reduct: Phosphoa 98.8 3.6E-09 7.8E-14 67.4 3.0 35 7-50 1-35 (174)
25 PRK08349 hypothetical protein; 98.8 9.7E-09 2.1E-13 68.5 5.1 34 7-49 2-35 (198)
26 PRK14664 tRNA-specific 2-thiou 98.8 1.3E-08 2.8E-13 74.5 5.8 40 1-49 1-40 (362)
27 TIGR02039 CysD sulfate adenyly 98.7 1.5E-08 3.2E-13 72.5 4.9 40 6-50 20-59 (294)
28 PLN02347 GMP synthetase 98.7 2.5E-08 5.4E-13 76.0 5.6 42 3-52 227-268 (536)
29 PRK00143 mnmA tRNA-specific 2- 98.6 5.4E-08 1.2E-12 70.3 5.4 35 7-50 2-36 (346)
30 TIGR00032 argG argininosuccina 98.6 5.3E-08 1.1E-12 71.9 5.4 35 7-50 1-35 (394)
31 PLN00200 argininosuccinate syn 98.6 6.1E-08 1.3E-12 71.9 5.6 38 5-50 5-42 (404)
32 TIGR03573 WbuX N-acetyl sugar 98.6 4.5E-08 9.7E-13 70.5 4.4 37 7-51 61-97 (343)
33 TIGR00434 cysH phosophoadenyly 98.6 4.8E-08 1.1E-12 65.6 4.2 37 6-51 14-50 (212)
34 cd01998 tRNA_Me_trans tRNA met 98.6 6.3E-08 1.4E-12 70.0 5.0 35 7-50 1-35 (349)
35 PRK00509 argininosuccinate syn 98.6 7.9E-08 1.7E-12 71.2 5.5 38 5-50 2-39 (399)
36 PRK14561 hypothetical protein; 98.6 1.1E-07 2.4E-12 63.8 5.0 34 7-50 2-35 (194)
37 TIGR00342 thiazole biosynthesi 98.6 1.4E-07 3E-12 68.7 5.9 40 2-50 169-208 (371)
38 PRK12563 sulfate adenylyltrans 98.5 1.1E-07 2.3E-12 68.8 4.6 41 5-50 37-77 (312)
39 PRK13794 hypothetical protein; 98.5 1.4E-07 3.1E-12 70.9 5.0 39 5-51 247-285 (479)
40 TIGR00420 trmU tRNA (5-methyla 98.5 2E-07 4.3E-12 67.7 5.6 35 6-49 1-35 (352)
41 PF06508 QueC: Queuosine biosy 98.5 2E-07 4.3E-12 63.5 5.1 36 7-51 1-36 (209)
42 COG3969 Predicted phosphoadeno 98.5 1E-07 2.2E-12 70.4 3.6 42 2-48 24-66 (407)
43 PRK08576 hypothetical protein; 98.5 1.7E-07 3.6E-12 70.2 4.5 37 6-51 235-271 (438)
44 cd01994 Alpha_ANH_like_IV This 98.5 2.7E-07 5.9E-12 62.1 5.0 35 7-50 1-35 (194)
45 PRK11106 queuosine biosynthesi 98.5 4.3E-07 9.3E-12 63.0 5.7 37 6-51 2-38 (231)
46 TIGR00364 exsB protein. This p 98.5 2.9E-07 6.3E-12 61.2 4.6 34 8-50 1-34 (201)
47 COG0519 GuaA GMP synthase, PP- 98.4 1.7E-07 3.8E-12 67.5 3.6 41 5-53 21-61 (315)
48 PRK08557 hypothetical protein; 98.4 2.5E-07 5.5E-12 68.8 4.3 38 5-51 181-218 (417)
49 cd01999 Argininosuccinate_Synt 98.4 3.4E-07 7.3E-12 67.5 4.9 35 8-50 1-35 (385)
50 PRK04527 argininosuccinate syn 98.4 4.8E-07 1E-11 67.2 5.5 38 5-51 2-39 (400)
51 TIGR02057 PAPS_reductase phosp 98.4 4E-07 8.6E-12 62.6 4.2 39 5-51 25-63 (226)
52 PRK13795 hypothetical protein; 98.4 4.4E-07 9.6E-12 70.1 4.8 38 5-51 243-280 (636)
53 TIGR00552 nadE NAD+ synthetase 98.4 5.5E-07 1.2E-11 62.1 4.7 39 4-50 21-59 (250)
54 PRK08384 thiamine biosynthesis 98.4 7.8E-07 1.7E-11 65.5 5.7 37 4-49 179-215 (381)
55 KOG2805|consensus 98.4 1.1E-06 2.3E-11 64.4 6.0 52 1-69 1-52 (377)
56 PRK13980 NAD synthetase; Provi 98.3 9E-07 2E-11 61.6 4.7 39 5-50 30-68 (265)
57 PRK05370 argininosuccinate syn 98.3 1.7E-06 3.6E-11 65.2 6.1 39 3-50 9-47 (447)
58 PF03054 tRNA_Me_trans: tRNA m 98.3 1.5E-06 3.2E-11 63.7 5.4 36 6-50 1-36 (356)
59 PRK01269 tRNA s(4)U8 sulfurtra 98.3 1.6E-06 3.5E-11 65.0 5.7 38 4-50 176-213 (482)
60 TIGR03183 DNA_S_dndC putative 98.3 1.6E-06 3.4E-11 65.2 5.3 45 5-50 13-58 (447)
61 cd00553 NAD_synthase NAD+ synt 98.2 1.5E-06 3.4E-11 59.7 4.2 39 4-50 22-61 (248)
62 PRK01565 thiamine biosynthesis 98.2 3E-06 6.4E-11 62.2 5.7 37 3-48 174-210 (394)
63 COG0482 TrmU Predicted tRNA(5- 98.2 3.5E-06 7.7E-11 61.9 5.6 38 4-50 2-39 (356)
64 PRK06850 hypothetical protein; 98.2 2.9E-06 6.4E-11 64.7 5.0 46 5-50 34-79 (507)
65 COG0175 CysH 3'-phosphoadenosi 98.2 3.2E-06 6.9E-11 59.2 4.4 37 6-51 40-76 (261)
66 KOG2840|consensus 98.1 4.6E-06 9.9E-11 61.0 4.2 54 1-58 47-100 (347)
67 cd01984 AANH_like Adenine nucl 98.1 5.4E-06 1.2E-10 48.0 3.7 34 8-47 1-34 (86)
68 COG0137 ArgG Argininosuccinate 98.0 1.6E-05 3.5E-10 59.2 5.8 39 4-50 3-41 (403)
69 COG0603 Predicted PP-loop supe 98.0 2E-05 4.3E-10 54.9 5.7 39 5-52 2-40 (222)
70 PF00764 Arginosuc_synth: Argi 98.0 1.4E-05 3.1E-10 59.3 5.2 34 9-50 1-34 (388)
71 COG2117 Predicted subunit of t 97.9 2E-05 4.3E-10 53.5 4.4 37 7-52 2-38 (198)
72 PF02540 NAD_synthase: NAD syn 97.8 2.7E-05 5.8E-10 54.1 3.9 39 5-50 18-56 (242)
73 PF02568 ThiI: Thiamine biosyn 97.8 6.8E-05 1.5E-09 51.1 5.8 36 5-49 3-38 (197)
74 PF00733 Asn_synthase: Asparag 97.7 0.00013 2.8E-09 48.3 6.2 40 3-50 15-54 (255)
75 KOG1622|consensus 97.7 5.1E-05 1.1E-09 57.9 4.5 40 5-52 230-270 (552)
76 TIGR03679 arCOG00187 arCOG0018 97.7 6.3E-05 1.4E-09 51.3 4.2 31 9-48 1-32 (218)
77 cd01991 Asn_Synthase_B_C The C 97.7 8.7E-05 1.9E-09 50.3 4.5 40 3-50 13-52 (269)
78 PRK02628 nadE NAD synthetase; 97.6 9.7E-05 2.1E-09 57.6 4.2 40 4-49 360-402 (679)
79 PRK00876 nadE NAD synthetase; 97.5 0.00017 3.7E-09 52.4 4.5 38 5-50 33-71 (326)
80 TIGR00289 conserved hypothetic 97.5 0.00023 5E-09 49.3 4.8 21 7-27 2-22 (222)
81 PTZ00323 NAD+ synthase; Provis 97.2 0.00029 6.4E-09 50.5 3.2 25 5-29 46-70 (294)
82 TIGR00290 MJ0570_dom MJ0570-re 97.1 0.00073 1.6E-08 46.9 4.1 21 7-27 2-22 (223)
83 PRK13981 NAD synthetase; Provi 97.1 0.0008 1.7E-08 50.8 4.4 38 5-50 280-318 (540)
84 PF01902 ATP_bind_4: ATP-bindi 97.0 0.0026 5.7E-08 43.8 6.1 21 7-27 2-22 (218)
85 KOG1706|consensus 97.0 0.0007 1.5E-08 50.0 3.1 42 1-51 1-42 (412)
86 COG1365 Predicted ATPase (PP-l 96.9 0.00093 2E-08 47.1 3.2 23 5-27 60-82 (255)
87 TIGR00424 APS_reduc 5'-adenyly 96.7 0.0016 3.6E-08 49.3 3.1 39 5-53 115-153 (463)
88 PLN02309 5'-adenylylsulfate re 96.6 0.002 4.4E-08 48.7 3.2 39 5-53 110-148 (457)
89 COG2102 Predicted ATPases of P 96.6 0.005 1.1E-07 43.0 4.7 32 7-47 2-34 (223)
90 TIGR01536 asn_synth_AEB aspara 96.6 0.0047 1E-07 45.8 4.8 39 4-49 252-290 (467)
91 KOG0573|consensus 96.3 0.0079 1.7E-07 46.1 4.8 38 5-48 250-287 (520)
92 KOG2594|consensus 96.3 0.0064 1.4E-07 45.3 4.0 46 1-46 58-105 (396)
93 PRK00768 nadE NAD synthetase; 96.0 0.0089 1.9E-07 42.5 3.4 25 4-28 37-61 (268)
94 COG0171 NadE NAD synthase [Coe 95.9 0.009 1.9E-07 42.6 3.2 40 5-49 25-66 (268)
95 TIGR02055 APS_reductase thiore 95.0 0.025 5.4E-07 37.7 2.9 28 15-51 2-29 (191)
96 PLN02549 asparagine synthase ( 94.2 0.046 1E-06 42.4 3.0 25 5-29 225-249 (578)
97 COG0301 ThiI Thiamine biosynth 94.1 0.12 2.7E-06 38.6 4.9 35 5-48 175-209 (383)
98 TIGR03108 eps_aminotran_1 exos 93.8 0.081 1.8E-06 40.7 3.7 24 4-27 257-280 (628)
99 TIGR03104 trio_amidotrans aspa 93.8 0.1 2.2E-06 40.3 4.2 24 4-27 259-282 (589)
100 PF00582 Usp: Universal stress 93.7 0.2 4.3E-06 29.1 4.5 40 6-50 3-42 (140)
101 PRK09431 asnB asparagine synth 93.6 0.072 1.6E-06 41.0 3.1 24 4-27 226-249 (554)
102 PTZ00077 asparagine synthetase 93.4 0.084 1.8E-06 41.0 3.2 24 4-27 236-259 (586)
103 cd05565 PTS_IIB_lactose PTS_II 93.1 0.27 5.9E-06 30.1 4.5 24 7-30 2-25 (99)
104 COG0367 AsnB Asparagine syntha 92.6 0.13 2.9E-06 39.5 3.2 24 4-27 229-252 (542)
105 PLN02339 NAD+ synthase (glutam 92.4 0.14 3.1E-06 40.5 3.1 22 4-25 347-368 (700)
106 cd00293 USP_Like Usp: Universa 92.3 0.53 1.2E-05 27.0 4.9 39 7-50 1-39 (130)
107 PRK09982 universal stress prot 92.0 0.38 8.2E-06 29.9 4.2 40 5-49 3-42 (142)
108 cd01989 STK_N The N-terminal d 91.8 0.43 9.2E-06 29.2 4.3 38 7-49 1-38 (146)
109 COG0794 GutQ Predicted sugar p 91.8 0.4 8.7E-06 33.1 4.5 43 1-50 83-125 (202)
110 PF02302 PTS_IIB: PTS system, 91.4 0.98 2.1E-05 25.8 5.3 36 7-47 1-37 (90)
111 cd01987 USP_OKCHK USP domain i 91.3 0.49 1.1E-05 28.1 4.0 39 7-50 1-39 (124)
112 PRK08305 spoVFB dipicolinate s 91.0 0.84 1.8E-05 31.2 5.4 41 1-47 1-42 (196)
113 cd01988 Na_H_Antiporter_C The 90.2 0.93 2E-05 26.8 4.6 38 7-49 1-38 (132)
114 TIGR00853 pts-lac PTS system, 90.0 1.3 2.8E-05 26.6 5.1 38 5-47 3-40 (95)
115 PF02441 Flavoprotein: Flavopr 89.6 0.77 1.7E-05 28.5 4.0 36 6-47 1-36 (129)
116 PRK15118 universal stress glob 89.4 1.3 2.9E-05 27.0 5.0 40 5-49 3-42 (144)
117 PRK09590 celB cellobiose phosp 89.3 1.3 2.7E-05 27.3 4.8 37 6-47 2-38 (104)
118 PRK07313 phosphopantothenoylcy 89.1 1.3 2.7E-05 29.6 4.9 36 6-47 2-37 (182)
119 cd05564 PTS_IIB_chitobiose_lic 88.3 1.5 3.2E-05 26.3 4.5 36 7-47 1-36 (96)
120 TIGR02113 coaC_strep phosphopa 88.2 1.6 3.5E-05 29.0 5.0 36 6-47 1-36 (177)
121 TIGR00421 ubiX_pad polyprenyl 88.1 1.3 2.8E-05 29.6 4.5 35 7-47 1-35 (181)
122 PRK05920 aromatic acid decarbo 87.0 2.3 5E-05 29.1 5.3 38 4-47 2-39 (204)
123 KOG2316|consensus 87.0 1.3 2.9E-05 31.6 4.2 29 7-44 2-30 (277)
124 PRK10490 sensor protein KdpD; 86.9 1.8 4E-05 35.0 5.5 41 4-49 249-289 (895)
125 PRK10499 PTS system N,N'-diace 86.1 3.4 7.3E-05 25.3 5.3 35 6-45 4-38 (106)
126 PRK06029 3-octaprenyl-4-hydrox 85.9 2.2 4.7E-05 28.8 4.7 37 6-47 2-38 (185)
127 KOG3425|consensus 85.8 4.9 0.00011 26.0 6.0 44 3-51 23-76 (128)
128 PRK10116 universal stress prot 85.2 2.5 5.5E-05 25.6 4.4 38 5-47 3-40 (142)
129 TIGR00521 coaBC_dfp phosphopan 84.1 3.2 7E-05 30.9 5.3 38 4-47 2-39 (390)
130 cd01523 RHOD_Lact_B Member of 83.3 4.2 9.2E-05 23.5 4.7 37 3-50 59-95 (100)
131 cd01400 6PGL 6PGL: 6-Phosphogl 81.8 4.5 9.7E-05 27.3 4.9 43 4-52 21-64 (219)
132 KOG0571|consensus 81.0 3.2 7E-05 32.3 4.3 41 6-47 226-266 (543)
133 KOG2644|consensus 81.0 0.62 1.3E-05 33.7 0.5 45 6-50 83-130 (282)
134 COG2205 KdpD Osmosensitive K+ 80.4 3.6 7.9E-05 33.9 4.6 42 4-50 247-288 (890)
135 PRK05579 bifunctional phosphop 80.2 4.9 0.00011 30.0 5.0 38 4-47 5-42 (399)
136 TIGR02700 flavo_MJ0208 archaeo 78.6 5.1 0.00011 27.4 4.4 36 7-47 1-38 (234)
137 TIGR02852 spore_dpaB dipicolin 77.4 8 0.00017 26.1 5.0 38 6-49 1-39 (187)
138 PRK10310 PTS system galactitol 77.3 9.5 0.00021 22.7 4.9 37 7-48 4-41 (94)
139 TIGR01198 pgl 6-phosphoglucono 77.2 7.8 0.00017 26.5 5.0 42 4-52 26-68 (233)
140 PRK15005 universal stress prot 77.1 7.8 0.00017 23.3 4.5 39 6-49 3-43 (144)
141 PF13580 SIS_2: SIS domain; PD 75.7 5.2 0.00011 25.0 3.6 37 2-45 101-137 (138)
142 PRK13982 bifunctional SbtC-lik 74.6 9.3 0.0002 29.4 5.2 37 5-47 70-106 (475)
143 cd01520 RHOD_YbbB Member of th 73.9 9.8 0.00021 23.2 4.4 37 3-50 84-121 (128)
144 KOG2303|consensus 72.8 4.3 9.3E-05 32.3 3.1 27 5-32 349-375 (706)
145 PLN02360 probable 6-phosphoglu 72.7 11 0.00024 26.3 4.9 46 3-52 39-85 (268)
146 PF03668 ATP_bind_2: P-loop AT 71.6 8 0.00017 28.0 4.1 34 7-45 244-278 (284)
147 PRK15456 universal stress prot 69.7 16 0.00036 22.1 4.8 39 5-49 2-42 (142)
148 PRK12652 putative monovalent c 68.2 19 0.00041 26.6 5.5 42 3-49 3-46 (357)
149 PTZ00285 glucosamine-6-phospha 68.0 9.5 0.00021 26.3 3.7 45 3-50 30-75 (253)
150 cd01529 4RHOD_Repeats Member o 67.3 17 0.00037 20.7 4.3 38 3-50 54-91 (96)
151 cd01534 4RHOD_Repeat_3 Member 66.8 21 0.00045 20.3 4.6 35 5-50 56-90 (95)
152 PRK07667 uridine kinase; Provi 65.9 18 0.0004 23.6 4.7 42 4-50 14-57 (193)
153 cd01524 RHOD_Pyr_redox Member 65.4 22 0.00047 20.0 4.4 38 2-50 48-85 (90)
154 PF01182 Glucosamine_iso: Gluc 65.1 9.7 0.00021 25.3 3.2 44 4-51 19-63 (199)
155 COG0452 Dfp Phosphopantothenoy 64.9 16 0.00035 27.2 4.6 39 4-48 3-41 (392)
156 TIGR02699 archaeo_AfpA archaeo 64.4 18 0.00039 24.2 4.4 36 7-47 1-37 (174)
157 COG0572 Udk Uridine kinase [Nu 64.2 19 0.00042 25.1 4.6 41 3-50 4-46 (218)
158 COG0191 Fba Fructose/tagatose 64.0 4.8 0.0001 29.2 1.7 44 5-50 42-86 (286)
159 PLN02496 probable phosphopanto 63.6 25 0.00053 24.3 5.1 35 4-45 18-52 (209)
160 cd01527 RHOD_YgaP Member of th 61.7 28 0.0006 19.8 4.6 38 3-50 52-89 (99)
161 KOG3147|consensus 61.3 29 0.00063 24.9 5.2 44 3-50 37-81 (252)
162 PRK11175 universal stress prot 58.8 16 0.00035 24.9 3.5 37 5-46 3-39 (305)
163 TIGR00502 nagB glucosamine-6-p 58.0 31 0.00068 23.7 4.9 43 5-50 32-75 (259)
164 COG1619 LdcA Uncharacterized p 56.5 13 0.00028 27.2 2.8 23 2-27 99-121 (313)
165 COG0163 UbiX 3-polyprenyl-4-hy 56.1 33 0.00072 23.6 4.6 36 6-47 3-38 (191)
166 cd01518 RHOD_YceA Member of th 55.9 28 0.0006 20.0 3.8 37 4-50 60-96 (101)
167 KOG2862|consensus 54.9 18 0.0004 27.2 3.4 40 1-50 88-127 (385)
168 PRK11175 universal stress prot 53.8 35 0.00076 23.2 4.5 40 4-48 151-198 (305)
169 COG1660 Predicted P-loop-conta 53.7 34 0.00073 25.0 4.5 36 7-46 245-281 (286)
170 COG1440 CelA Phosphotransferas 52.6 55 0.0012 20.4 4.9 22 6-27 2-23 (102)
171 PRK06696 uridine kinase; Valid 51.5 43 0.00093 22.3 4.6 42 4-50 19-62 (223)
172 cd01447 Polysulfide_ST Polysul 51.2 27 0.00058 19.7 3.2 38 3-50 59-96 (103)
173 cd01533 4RHOD_Repeat_2 Member 49.7 51 0.0011 19.2 4.3 37 5-50 66-102 (109)
174 cd05015 SIS_PGI_1 Phosphogluco 49.3 53 0.0012 20.9 4.6 40 8-47 78-118 (158)
175 PRK05416 glmZ(sRNA)-inactivati 49.1 42 0.00091 23.9 4.4 35 7-47 247-282 (288)
176 cd01444 GlpE_ST GlpE sulfurtra 48.9 47 0.001 18.5 4.4 25 3-27 54-78 (96)
177 PRK09762 galactosamine-6-phosp 46.6 28 0.00061 23.8 3.1 43 4-49 26-69 (232)
178 cd00458 SugarP_isomerase Sugar 46.3 41 0.00088 21.7 3.7 43 4-51 18-61 (169)
179 PRK08526 threonine dehydratase 46.1 34 0.00074 25.4 3.7 27 4-30 294-321 (403)
180 cd01526 RHOD_ThiF Member of th 45.9 42 0.00092 20.1 3.6 39 3-50 70-108 (122)
181 PRK12738 kbaY tagatose-bisphos 45.7 12 0.00025 27.0 1.1 40 5-50 42-85 (286)
182 cd01521 RHOD_PspE2 Member of t 45.4 62 0.0013 18.9 4.8 38 2-50 61-100 (110)
183 PRK10886 DnaA initiator-associ 45.0 51 0.0011 22.2 4.2 37 7-49 111-147 (196)
184 PF09866 DUF2093: Uncharacteri 43.6 26 0.00057 18.6 2.0 16 1-16 1-16 (42)
185 PRK12358 putative 6-phosphoglu 43.4 33 0.00071 23.4 3.1 41 4-48 26-67 (239)
186 PRK05087 D-alanine--poly(phosp 42.9 21 0.00045 20.7 1.8 24 13-41 31-54 (78)
187 PRK00982 acpP acyl carrier pro 42.7 18 0.00039 20.1 1.4 18 13-31 32-49 (78)
188 PRK07315 fructose-bisphosphate 42.6 14 0.00031 26.4 1.2 40 5-49 42-87 (293)
189 cd07062 Peptidase_S66_mccF_lik 42.4 23 0.00049 25.2 2.2 23 2-27 91-113 (308)
190 PF00550 PP-binding: Phosphopa 42.2 7.8 0.00017 20.6 -0.1 18 13-31 26-43 (67)
191 COG0236 AcpP Acyl carrier prot 42.2 20 0.00043 20.3 1.6 22 14-40 35-56 (80)
192 cd05567 PTS_IIB_mannitol PTS_I 42.1 67 0.0014 18.3 4.5 38 6-48 1-39 (87)
193 cd01449 TST_Repeat_2 Thiosulfa 42.0 47 0.001 19.4 3.3 25 3-27 76-100 (118)
194 PF02677 DUF208: Uncharacteriz 41.1 42 0.00092 22.7 3.2 34 10-53 3-36 (176)
195 COG1636 Uncharacterized protei 40.4 77 0.0017 22.1 4.5 40 4-53 2-41 (204)
196 CHL00124 acpP acyl carrier pro 40.0 21 0.00046 20.1 1.5 22 14-40 35-56 (82)
197 TIGR02964 xanthine_xdhC xanthi 39.5 91 0.002 21.6 4.8 32 4-45 99-130 (246)
198 PRK05835 fructose-bisphosphate 39.1 19 0.00042 26.2 1.5 41 5-50 41-85 (307)
199 PRK02122 glucosamine-6-phospha 38.8 61 0.0013 25.9 4.3 44 4-50 57-101 (652)
200 PLN02828 formyltetrahydrofolat 38.3 99 0.0022 22.0 4.9 40 4-49 69-108 (268)
201 cd05566 PTS_IIB_galactitol PTS 38.2 76 0.0016 17.9 4.6 21 7-27 2-23 (89)
202 COG3414 SgaB Phosphotransferas 37.6 93 0.002 18.7 5.3 38 6-48 2-42 (93)
203 PRK00162 glpE thiosulfate sulf 37.5 84 0.0018 18.2 4.1 37 4-50 57-93 (108)
204 PRK07639 acyl carrier protein; 37.5 28 0.0006 20.4 1.8 23 14-41 36-58 (86)
205 PRK07334 threonine dehydratase 37.4 98 0.0021 22.7 5.0 41 4-47 294-335 (403)
206 COG0279 GmhA Phosphoheptose is 37.3 81 0.0018 21.5 4.1 47 3-50 39-85 (176)
207 PRK07081 acyl carrier protein; 36.1 28 0.00061 20.1 1.6 22 15-41 32-53 (83)
208 PF13478 XdhC_C: XdhC Rossmann 35.3 91 0.002 19.7 4.0 32 9-49 1-32 (136)
209 cd07025 Peptidase_S66 LD-Carbo 35.1 43 0.00093 23.5 2.7 22 3-27 88-109 (282)
210 PRK09195 gatY tagatose-bisphos 34.9 18 0.0004 25.9 0.8 40 5-50 42-85 (284)
211 TIGR01858 tag_bisphos_ald clas 34.8 23 0.00049 25.4 1.3 40 5-50 40-83 (282)
212 TIGR03752 conj_TIGR03752 integ 34.6 75 0.0016 24.8 4.0 50 11-63 419-471 (472)
213 PRK12857 fructose-1,6-bisphosp 34.5 21 0.00046 25.6 1.1 40 5-50 42-85 (284)
214 PF13660 DUF4147: Domain of un 34.4 41 0.0009 23.6 2.5 18 3-20 114-131 (238)
215 PRK12737 gatY tagatose-bisphos 33.3 26 0.00056 25.1 1.3 40 5-50 42-85 (284)
216 smart00450 RHOD Rhodanese Homo 33.2 84 0.0018 16.9 4.8 38 3-50 54-91 (100)
217 COG0363 NagB 6-phosphogluconol 33.1 1.2E+02 0.0026 21.1 4.6 43 5-51 31-74 (238)
218 PF04069 OpuAC: Substrate bind 33.0 1.5E+02 0.0032 20.0 5.0 38 6-48 1-38 (257)
219 cd00133 PTS_IIB PTS_IIB: subun 32.9 41 0.00088 17.9 1.9 23 7-29 1-24 (84)
220 PRK11557 putative DNA-binding 32.2 82 0.0018 21.5 3.7 39 3-48 174-212 (278)
221 TIGR00517 acyl_carrier acyl ca 32.1 34 0.00074 19.0 1.5 24 13-41 32-55 (77)
222 PRK05439 pantothenate kinase; 31.8 1.4E+02 0.0031 21.7 4.9 44 4-50 83-128 (311)
223 cd01519 RHOD_HSP67B2 Member of 31.4 1E+02 0.0023 17.4 3.9 24 4-27 65-88 (106)
224 TIGR01521 FruBisAldo_II_B fruc 30.8 27 0.00058 26.0 1.1 41 5-50 40-84 (347)
225 PF00975 Thioesterase: Thioest 30.7 1.2E+02 0.0027 19.3 4.2 38 4-49 65-103 (229)
226 PRK13399 fructose-1,6-bisphosp 30.2 29 0.00062 25.8 1.2 10 41-50 77-86 (347)
227 cd05013 SIS_RpiR RpiR-like pro 30.2 1E+02 0.0022 17.9 3.5 38 6-49 61-98 (139)
228 PLN03028 pyrophosphate--fructo 29.5 2.2E+02 0.0048 22.8 6.0 36 12-50 179-216 (610)
229 PRK11784 tRNA 2-selenouridine 29.4 1.3E+02 0.0028 22.1 4.4 36 4-50 87-123 (345)
230 PTZ00301 uridine kinase; Provi 29.1 1.4E+02 0.0031 20.1 4.4 20 7-26 3-24 (210)
231 PF08497 Radical_SAM_N: Radica 28.7 52 0.0011 24.2 2.2 22 5-26 68-90 (302)
232 PLN03159 cation/H(+) antiporte 28.5 1.8E+02 0.0039 23.9 5.4 39 6-49 631-669 (832)
233 cd05710 SIS_1 A subgroup of th 28.5 1.3E+02 0.0028 18.0 3.8 38 6-49 48-85 (120)
234 cd00946 FBP_aldolase_IIA Class 28.5 61 0.0013 24.1 2.6 25 20-50 74-98 (345)
235 PRK12449 acyl carrier protein; 27.8 45 0.00098 18.6 1.5 17 14-31 35-51 (80)
236 COG4825 Uncharacterized membra 27.7 35 0.00077 25.6 1.3 18 2-19 203-220 (395)
237 PRK00443 nagB glucosamine-6-ph 27.4 1.5E+02 0.0033 20.0 4.3 41 6-49 33-74 (261)
238 TIGR03528 2_3_DAP_am_ly diamin 27.3 70 0.0015 23.7 2.8 24 4-27 371-395 (396)
239 PRK09184 acyl carrier protein; 27.1 47 0.001 19.7 1.5 23 14-41 40-62 (89)
240 cd01528 RHOD_2 Member of the R 27.0 1.3E+02 0.0028 17.1 4.4 36 5-50 58-93 (101)
241 TIGR00441 gmhA phosphoheptose 26.8 1.3E+02 0.0028 18.9 3.7 37 6-48 80-116 (154)
242 PRK05320 rhodanese superfamily 26.7 99 0.0021 21.6 3.3 37 4-50 174-210 (257)
243 PRK05883 acyl carrier protein; 26.7 47 0.001 19.6 1.5 17 14-31 44-60 (91)
244 PRK13936 phosphoheptose isomer 26.6 1.3E+02 0.0029 19.8 3.8 36 7-48 113-148 (197)
245 PRK08610 fructose-bisphosphate 26.5 38 0.00082 24.4 1.2 15 36-50 73-88 (286)
246 PRK00142 putative rhodanese-re 26.4 1.5E+02 0.0031 21.4 4.2 37 4-50 170-206 (314)
247 TIGR01127 ilvA_1Cterm threonin 26.4 1.9E+02 0.0041 20.9 4.8 27 4-30 273-300 (380)
248 PRK06801 hypothetical protein; 26.2 32 0.0007 24.6 0.8 40 5-50 42-85 (286)
249 PF05872 DUF853: Bacterial pro 26.1 1.3E+02 0.0027 23.8 4.0 30 18-48 232-263 (502)
250 COG1158 Rho Transcription term 25.7 40 0.00087 25.7 1.3 16 3-21 281-296 (422)
251 PF02016 Peptidase_S66: LD-car 25.5 36 0.00078 24.0 1.0 22 3-27 88-109 (284)
252 PRK07998 gatY putative fructos 25.2 30 0.00066 24.8 0.5 14 36-50 72-85 (283)
253 cd05005 SIS_PHI Hexulose-6-pho 25.2 1.5E+02 0.0033 18.8 3.9 38 6-49 76-113 (179)
254 KOG1325|consensus 25.0 54 0.0012 26.1 1.9 19 4-22 46-65 (571)
255 PF09967 DUF2201: VWA-like dom 24.9 1.8E+02 0.0038 18.0 4.0 43 8-52 3-45 (126)
256 PF09363 XFP_C: XFP C-terminal 24.8 2.1E+02 0.0045 19.9 4.6 34 7-47 36-72 (203)
257 cd00158 RHOD Rhodanese Homolog 24.6 1.2E+02 0.0027 16.0 4.9 25 3-27 48-72 (89)
258 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.5 1.6E+02 0.0034 17.2 3.7 36 7-48 48-83 (126)
259 KOG1907|consensus 24.5 32 0.00069 29.4 0.6 15 8-22 785-799 (1320)
260 TIGR03692 ATP_dep_HslV ATP-dep 24.2 1.4E+02 0.003 19.9 3.5 26 5-30 39-65 (171)
261 TIGR03167 tRNA_sel_U_synt tRNA 24.0 2.2E+02 0.0049 20.5 4.8 33 7-50 76-109 (311)
262 PRK05828 acyl carrier protein; 23.9 59 0.0013 19.0 1.5 23 13-40 34-56 (84)
263 PRK05350 acyl carrier protein; 23.9 61 0.0013 18.3 1.6 23 13-40 35-57 (82)
264 PF11288 DUF3089: Protein of u 23.9 82 0.0018 21.7 2.5 37 6-47 96-132 (207)
265 PF09895 DUF2122: RecB-family 23.7 65 0.0014 20.1 1.8 14 3-16 57-70 (106)
266 TIGR00167 cbbA ketose-bisphosp 23.5 39 0.00084 24.2 0.8 41 5-50 42-88 (288)
267 PRK09196 fructose-1,6-bisphosp 23.5 46 0.00099 24.7 1.2 45 5-50 42-86 (347)
268 TIGR01688 dltC D-alanine--poly 23.5 90 0.0019 18.0 2.2 23 14-41 29-51 (73)
269 PRK11253 ldcA L,D-carboxypepti 23.3 1.2E+02 0.0027 21.6 3.4 20 5-27 98-117 (305)
270 PRK08813 threonine dehydratase 23.2 1.1E+02 0.0023 22.5 3.1 24 4-27 297-321 (349)
271 cd05006 SIS_GmhA Phosphoheptos 23.2 1.6E+02 0.0035 18.7 3.6 36 7-48 103-138 (177)
272 PF13809 Tubulin_2: Tubulin li 23.2 2.4E+02 0.0051 20.3 4.8 41 8-49 152-194 (345)
273 cd01399 GlcN6P_deaminase GlcN6 23.1 1.3E+02 0.0028 19.8 3.3 44 4-50 17-61 (232)
274 PF12017 Tnp_P_element: Transp 23.1 2.4E+02 0.0052 19.7 4.7 39 6-50 183-221 (236)
275 PF01380 SIS: SIS domain SIS d 22.8 1.7E+02 0.0037 17.0 4.1 39 5-49 53-91 (131)
276 KOG0538|consensus 22.6 1.2E+02 0.0026 22.8 3.2 17 34-50 143-159 (363)
277 cd05017 SIS_PGI_PMI_1 The memb 22.6 1.8E+02 0.0039 17.2 3.7 38 6-49 44-81 (119)
278 PRK07709 fructose-bisphosphate 22.1 48 0.001 23.8 1.1 15 36-50 73-88 (285)
279 COG0788 PurU Formyltetrahydrof 22.1 2.8E+02 0.0061 20.3 5.0 41 4-50 89-129 (287)
280 cd05014 SIS_Kpsf KpsF-like pro 22.1 1.8E+02 0.0039 17.0 3.7 38 6-49 48-85 (128)
281 PRK13937 phosphoheptose isomer 21.9 1.8E+02 0.004 18.9 3.8 36 6-47 107-142 (188)
282 cd00765 Pyrophosphate_PFK Phos 21.8 1.9E+02 0.0042 22.8 4.4 36 12-50 172-209 (550)
283 PF01116 F_bP_aldolase: Fructo 21.8 1.5E+02 0.0032 21.2 3.5 44 5-50 41-84 (287)
284 TIGR02477 PFKA_PPi diphosphate 21.7 1.9E+02 0.0041 22.7 4.3 37 11-50 166-204 (539)
285 COG1751 Uncharacterized conser 21.5 2.3E+02 0.005 19.3 4.2 37 5-51 28-64 (186)
286 PRK00414 gmhA phosphoheptose i 21.4 1.8E+02 0.0038 19.2 3.6 36 7-48 113-148 (192)
287 TIGR02981 phageshock_pspE phag 21.4 1.9E+02 0.0042 17.1 4.0 23 5-27 58-80 (101)
288 TIGR03127 RuMP_HxlB 6-phospho 21.4 2E+02 0.0044 18.2 3.8 36 7-48 74-109 (179)
289 PLN02251 pyrophosphate-depende 21.2 2.1E+02 0.0045 22.8 4.4 34 12-50 196-233 (568)
290 cd01906 proteasome_protease_Hs 21.1 1.3E+02 0.0029 18.8 2.9 26 5-30 38-64 (182)
291 cd00363 PFK Phosphofructokinas 21.1 2.5E+02 0.0054 20.4 4.6 36 12-50 98-135 (338)
292 cd02028 UMPK_like Uridine mono 20.9 2.4E+02 0.0051 18.2 4.1 37 10-51 2-40 (179)
293 PRK08185 hypothetical protein; 20.9 63 0.0014 23.2 1.4 40 5-50 37-79 (283)
294 PRK06027 purU formyltetrahydro 20.7 2.2E+02 0.0048 20.2 4.2 40 4-49 88-127 (286)
295 PF00581 Rhodanese: Rhodanese- 20.7 1.7E+02 0.0037 16.2 3.3 43 3-50 65-107 (113)
296 PRK02947 hypothetical protein; 20.6 2.1E+02 0.0044 19.7 3.9 35 8-48 109-143 (246)
297 COG3580 Uncharacterized protei 20.5 2.3E+02 0.005 21.3 4.3 36 8-50 278-314 (351)
298 COG1348 NifH Nitrogenase subun 20.3 1.8E+02 0.004 21.1 3.7 42 6-48 144-185 (278)
299 cd00947 TBP_aldolase_IIB Tagat 20.1 46 0.001 23.8 0.6 40 5-50 37-80 (276)
No 1
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.50 E-value=6.4e-14 Score=96.90 Aligned_cols=51 Identities=29% Similarity=0.503 Sum_probs=42.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCc
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVS 55 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~ 55 (70)
|+.++++|+||+|||+||++||+++.+ +++ +...++++.++|+|+|+ ++++
T Consensus 25 li~~~~kilVa~SGG~DS~~LL~ll~~-l~~--~~~~~~~l~av~vd~g~-~~~~ 75 (258)
T PRK10696 25 MIEEGDRVMVCLSGGKDSYTLLDILLN-LQK--RAPINFELVAVNLDQKQ-PGFP 75 (258)
T ss_pred CCCCCCEEEEEecCCHHHHHHHHHHHH-HHH--hCCCCeEEEEEEecCCC-CCCC
Confidence 678999999999999999999999998 543 23456899999999997 5544
No 2
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.46 E-value=1.1e-13 Score=91.06 Aligned_cols=45 Identities=44% Similarity=0.647 Sum_probs=35.3
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCccc
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKS 57 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~~~ 57 (70)
||+||+|||+||++|++++.+ ++ ++.+.++.++||||++ ++++.+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~-~~----~~~~~~~~~~~vdh~~-~~~s~~ 45 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE-LR----RRNGIKLIAVHVDHGL-REESDE 45 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH-HH----TTTTTEEEEEEEE-ST-SCCHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH-HH----HhcCCCeEEEEEecCC-Ccccch
Confidence 799999999999999999998 43 4678899999999998 455544
No 3
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.39 E-value=3e-13 Score=100.02 Aligned_cols=51 Identities=31% Similarity=0.399 Sum_probs=42.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCccc
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKS 57 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~~~ 57 (70)
+.++++|+||+|||+||++||+++.+ +++ ...++++.++|||||++ +++++
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~-~~~---~~~~~~l~a~hvnhglr-~~s~~ 62 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQ-WRT---ENPGVTLRAIHVHHGLS-PNADS 62 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHH-HHH---hcCCCeEEEEEEeCCCC-cchHH
Confidence 56789999999999999999999987 431 34589999999999984 55543
No 4
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=7.9e-13 Score=91.37 Aligned_cols=43 Identities=47% Similarity=0.672 Sum_probs=36.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCc
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVS 55 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~ 55 (70)
+++|+||+|||+||++||++|.+ +. ++ +++.++|||||+ .+++
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~-l~----~~--~~~~a~~Vd~~~-~~~~ 63 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKE-LG----RR--IEVEAVHVDHGL-RGYS 63 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHH-hc----cC--ceEEEEEecCCC-CCcc
Confidence 68999999999999999999998 32 12 899999999998 5555
No 5
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.20 E-value=1e-11 Score=81.26 Aligned_cols=40 Identities=43% Similarity=0.612 Sum_probs=34.5
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
||+||+|||+||+++++++.+ +. ++.++++.++|||+|+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~-~~----~~~~~~v~~v~vd~g~~ 40 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLK-LQ----PKLKIRLIAAHVDHGLR 40 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHH-HH----HHcCCCEEEEEeCCCCC
Confidence 689999999999999999998 32 24678899999999983
No 6
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.19 E-value=3.2e-11 Score=77.87 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=34.2
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
||+|++|||+||+++++++.+... ..+.++++.++|+|+|..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~---~~~~~~~~~~~~~d~~~~ 42 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQR---RYPYGFELEALTVDEGIP 42 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHh---hcCCCeEEEEEEEECCCC
Confidence 689999999999999999998322 112378999999999974
No 7
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.07 E-value=1.2e-10 Score=75.51 Aligned_cols=39 Identities=49% Similarity=0.652 Sum_probs=33.8
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+||+|||+||+++++++.+... +.++++.++|+|+++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~-----~~~~~v~~v~id~~~ 39 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKP-----RLGLRLVAVHVDHGL 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH-----HcCCcEEEEEecCCC
Confidence 689999999999999999988322 347899999999997
No 8
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.04 E-value=2.9e-10 Score=71.33 Aligned_cols=38 Identities=37% Similarity=0.623 Sum_probs=31.6
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+|+|+||||+||++||+++.+... +. .++.++|+|+|.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-----~~-~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-----EL-KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-----cc-cCceEEEeCCCC
Confidence 589999999999999999998211 11 588999999997
No 9
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.03 E-value=3.1e-10 Score=81.27 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=35.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
+++|+||+|||+||+++++++.+ .+|.++.++|||+|+++
T Consensus 16 ~~kVvValSGGVDSsvla~ll~~--------~~G~~v~av~vd~G~~~ 55 (311)
T TIGR00884 16 DAKVIIALSGGVDSSVAAVLAHR--------AIGDRLTCVFVDHGLLR 55 (311)
T ss_pred CCcEEEEecCChHHHHHHHHHHH--------HhCCCEEEEEEeCCCCC
Confidence 48999999999999999999986 34679999999999854
No 10
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.01 E-value=7.3e-10 Score=72.30 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=32.8
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+|+|++|||+||+++++++.+ .|+++.++|+|+++.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~---------~g~~v~av~~d~g~~ 36 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK---------RGIEVDALHFNSGPF 36 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH---------cCCeEEEEEEeCCCC
Confidence 589999999999999999986 389999999999984
No 11
>PRK00919 GMP synthase subunit B; Validated
Probab=98.99 E-value=8.5e-10 Score=79.15 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=35.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
+++++||||||+||+++++++.+ .+|.++.++|+|+|+++
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~--------~lG~~v~aV~vD~G~~~ 60 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHR--------AIGDRLTPVFVDTGLMR 60 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHH--------HhCCeEEEEEEECCCCC
Confidence 48999999999999999999886 35789999999999853
No 12
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.97 E-value=5.6e-10 Score=79.55 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=33.5
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
||+||+|||+||+++++++.+ ..|.++.++|+|+|+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~--------~lG~~v~aV~vd~g~~~ 38 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHK--------AIGDRLTCVFVDNGLLR 38 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHH--------HhCCcEEEEEecCCCCC
Confidence 689999999999999999987 34678999999999854
No 13
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.95 E-value=1.8e-09 Score=78.68 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
|+.+++||+||+|||+||+++++++.+ .|+++.++|++.+.
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~---------~G~~V~~v~~~~~~ 41 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLE---------AGYEVTGVTFRFYE 41 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHH---------cCCeEEEEEEecCC
Confidence 789999999999999999999999986 47899999999753
No 14
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.90 E-value=2.2e-09 Score=64.90 Aligned_cols=35 Identities=40% Similarity=0.569 Sum_probs=30.7
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|+|++|||+||+++++++.+ .+.++.++|+|+++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~---------~~~~~~~~~~~~~~~ 35 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKK---------LGYQVIAVTVDHGIS 35 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHH---------hCCCEEEEEEcCCCc
Confidence 58999999999999999987 234899999999984
No 15
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.88 E-value=3.3e-09 Score=75.84 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..++++|+|||||||++|||++.+.+ ...++++.++|||+|.
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~-----~~~~~~~~vl~iDTG~ 67 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAF-----YPGKLPFPLLHVDTGW 67 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhh-----cccCCCeeEEEEeCCC
Confidence 35789999999999999999998722 2335678899999997
No 16
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.85 E-value=2.6e-09 Score=73.85 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=35.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+++.++++||+|||+||+++++++.+ .|.++.++|+|++.
T Consensus 9 l~~~~~vlVa~SGGvDSs~ll~la~~---------~g~~v~av~~~~~~ 48 (252)
T TIGR00268 9 LKEFKKVLIAYSGGVDSSLLAAVCSD---------AGTEVLAITVVSPS 48 (252)
T ss_pred HHhcCCEEEEecCcHHHHHHHHHHHH---------hCCCEEEEEecCCC
Confidence 35678999999999999999999986 27889999999875
No 17
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.84 E-value=4.5e-09 Score=66.79 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=31.2
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
.++|++|||+||+++++++.+ ..+.++.++|+|+++.
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~--------~~~~~v~~v~~~~g~~ 39 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKE--------KYGLNPLAVTVDNGFN 39 (154)
T ss_pred CEEEECCCchhHHHHHHHHHH--------HhCCceEEEEeCCCCC
Confidence 489999999999999999976 2335788999999973
No 18
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.84 E-value=3.7e-09 Score=69.98 Aligned_cols=36 Identities=31% Similarity=0.243 Sum_probs=30.7
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|+|++|||+||+++++++.+ ..+.++.++|+|+++.
T Consensus 1 vvva~SGG~DS~~ll~ll~~--------~~~~~v~~v~vd~g~~ 36 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVD--------ALGDRVLAVTATSPLF 36 (202)
T ss_pred CEEEccCCHHHHHHHHHHHH--------HhCCcEEEEEeCCCCC
Confidence 68999999999999999987 2234899999999973
No 19
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=98.83 E-value=3.9e-09 Score=72.59 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+++|+|++||||||+||||++.+ .+.++.++++|+|.
T Consensus 40 ~~~i~vs~SGGKDS~vlL~L~~~---------~~~~i~vvfiDTG~ 76 (241)
T PRK02090 40 GGRLALVSSFGAEDAVLLHLVAQ---------VDPDIPVIFLDTGY 76 (241)
T ss_pred CCCEEEEecCCHHHHHHHHHHHh---------cCCCCcEEEecCCC
Confidence 46799999999999999999997 35679999999997
No 20
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.83 E-value=6.1e-09 Score=78.57 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=35.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
.++|+||+|||+||+++++++.+ .+|.++.++|+|+|+++
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~--------~lg~~v~av~vd~g~~~ 254 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHK--------AIGDQLTCVFVDHGLLR 254 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHH--------HhCCceEEEEEeCCCCC
Confidence 48999999999999999999987 34778999999999844
No 21
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.82 E-value=8.1e-09 Score=66.71 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.3
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+|++|||+||+++++++.+ .+.++.++|+|.+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~---------~~~~v~~~~~~~~~ 35 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK---------EGYEVHALSFDYGQ 35 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH---------cCCcEEEEEEECCC
Confidence 689999999999999999986 35789999999986
No 22
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.82 E-value=8.8e-09 Score=76.12 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=34.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~ 50 (70)
.+||+||||||+||+++++++++ .+++ ++.++|+|+|+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e--------~~g~~~Viav~vd~g~ 40 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE--------KYGYDEVITVTVDVGQ 40 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH--------hcCCCEEEEEEEECCC
Confidence 57999999999999999999876 4677 99999999996
No 23
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.80 E-value=6e-09 Score=73.87 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
+...|++||||||+||++|+.+..+ .+|-++.++|||...++.
T Consensus 15 k~~~kv~vAfSGGvDSslLa~la~~--------~lG~~v~AvTv~sP~~p~ 57 (269)
T COG1606 15 KEKKKVVVAFSGGVDSSLLAKLAKE--------ALGDNVVAVTVDSPYIPR 57 (269)
T ss_pred hhcCeEEEEecCCccHHHHHHHHHH--------HhccceEEEEEecCCCCh
Confidence 4556999999999999999999987 568899999999887654
No 24
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=98.80 E-value=3.6e-09 Score=67.39 Aligned_cols=35 Identities=37% Similarity=0.672 Sum_probs=26.2
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+++|+|||||||++||+++.+... ++.++|+|+|.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~---------~~~vv~~dtg~ 35 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR---------KVPVVFIDTGY 35 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT---------TCEEEEEE-ST
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC---------CCcEEEEecCc
Confidence 479999999999999999998322 23699999996
No 25
>PRK08349 hypothetical protein; Validated
Probab=98.80 E-value=9.7e-09 Score=68.51 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=30.7
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
|+++++|||+||+++++++.+ .|+++.++|+|++
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~---------~g~~v~av~~d~~ 35 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR---------RGVEVYPVHFRQD 35 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH---------cCCeEEEEEEeCC
Confidence 789999999999999998875 4789999999985
No 26
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.79 E-value=1.3e-08 Score=74.49 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
|+.+++||+||+|||+||++++++|++ .|+++.++|++..
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~---------~G~eV~av~~~~~ 40 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQE---------QGYEIVGVTMRVW 40 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHH---------cCCcEEEEEecCc
Confidence 788999999999999999999998875 4789999999864
No 27
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=98.74 E-value=1.5e-08 Score=72.52 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=32.8
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
++.+++|||||||+||||++.+.. ...+.++.++|||+|.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf-----~~~~~p~~vl~IDTG~ 59 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAF-----YPGPLPFPLLHVDTGW 59 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHh-----cccCCCeEEEEEecCC
Confidence 456889999999999999999822 2235778999999997
No 28
>PLN02347 GMP synthetase
Probab=98.72 E-value=2.5e-08 Score=76.00 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=36.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
.+.++|+||+|||+||+++++++.+ .+|.++.++++|+|+++
T Consensus 227 ~~~~~vvvalSGGVDSsvla~l~~~--------alG~~v~av~id~g~~~ 268 (536)
T PLN02347 227 GPDEHVICALSGGVDSTVAATLVHK--------AIGDRLHCVFVDNGLLR 268 (536)
T ss_pred ccCCeEEEEecCChhHHHHHHHHHH--------HhCCcEEEEEEeCCCCC
Confidence 3467899999999999999999987 35789999999999853
No 29
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.64 E-value=5.4e-08 Score=70.31 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+||+|||+||++++++|.+ .|+++.++|++++.
T Consensus 2 kVlValSGGvDSsvla~lL~~---------~G~~V~~v~~~~~~ 36 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKE---------QGYEVIGVFMKLWD 36 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHH---------cCCcEEEEEEeCCC
Confidence 899999999999999999986 47889999999875
No 30
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.64 E-value=5.3e-08 Score=71.93 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=32.1
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+||||||+||+++++++++ . |+++.++|+|+|+
T Consensus 1 kVvla~SGGlDSsvll~~l~e--------~-g~~V~av~id~Gq 35 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLRE--------K-GYEVIAYTADVGQ 35 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHH--------c-CCEEEEEEEecCC
Confidence 689999999999999999986 2 8899999999996
No 31
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.64 E-value=6.1e-08 Score=71.94 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+||+||||||+||+++++++++ ++|.++.++|+|.|.
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e--------~~G~eViav~id~Gq 42 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE--------NYGCEVVCFTADVGQ 42 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH--------hhCCeEEEEEEECCC
Confidence 36999999999999999999986 458899999999996
No 32
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.62 E-value=4.5e-08 Score=70.55 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=32.6
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
.++||+|||+||+++++++.+ ++|.++.++|+|+++.
T Consensus 61 D~iV~lSGGkDSs~la~ll~~--------~~gl~~l~vt~~~~~~ 97 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKK--------KLGLNPLLVTVDPGWN 97 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHH--------HhCCceEEEEECCCCC
Confidence 399999999999999998865 4678899999999984
No 33
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.62 E-value=4.8e-08 Score=65.56 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.2
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+++++++||||||+||||++.+ ...++.++++|+|.-
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~---------~~~~~~v~f~DTg~e 50 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSK---------ISPDIPVIFLDTGYH 50 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHh---------cCCCCcEEEecCCCC
Confidence 4799999999999999999987 223567889999973
No 34
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.62 E-value=6.3e-08 Score=69.98 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=31.4
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+||+|||+||+++++++.+ .++++.++|++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~---------~g~~v~~v~i~~~~ 35 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE---------QGYEVIGVFMKNWD 35 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH---------cCCcEEEEEEeccc
Confidence 689999999999999999986 47899999999875
No 35
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.61 E-value=7.9e-08 Score=71.24 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=34.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+||+||||||+||+++++++++ ++|.++.++|+|.|.
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e--------~lG~eViavt~d~Gq 39 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKE--------TYGCEVIAFTADVGQ 39 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHH--------hhCCeEEEEEEecCC
Confidence 46999999999999999999987 458899999999996
No 36
>PRK14561 hypothetical protein; Provisional
Probab=98.57 E-value=1.1e-07 Score=63.80 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=29.7
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||+|++|||+||+++++++.+ . +++.++|++.++
T Consensus 2 kV~ValSGG~DSslll~~l~~---------~-~~v~a~t~~~g~ 35 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLER---------F-YDVELVTVNFGV 35 (194)
T ss_pred EEEEEEechHHHHHHHHHHHh---------c-CCeEEEEEecCc
Confidence 799999999999999998865 2 567899999997
No 37
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.57 E-value=1.4e-07 Score=68.66 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+...+|+++++|||.||+++++++.+ .|+++.++|+|.+.
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~k---------rG~~V~av~~~~~~ 208 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMK---------RGCRVVAVHFFNEP 208 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHH---------cCCeEEEEEEeCCC
Confidence 34578999999999999999999975 37899999999764
No 38
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.55 E-value=1.1e-07 Score=68.77 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+++++++||||||+||||++.+.+ ...+.++.++|||+|.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf-----~~~~~~~pvl~VDTG~ 77 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAF-----RPTRPPFPLLHVDTTW 77 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhh-----cccCCCeeEEEeCCCC
Confidence 4578899999999999999999832 2335678899999997
No 39
>PRK13794 hypothetical protein; Provisional
Probab=98.52 E-value=1.4e-07 Score=70.90 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=32.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+++++|+||||+||+++|+++.+ .++.++.++++|+|+-
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~--------~~~~~~~vvfiDTG~e 285 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALK--------ALGINFPVLFNDTGLE 285 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHH--------HhCCCeEEEEEECCCC
Confidence 46899999999999999999987 1245688999999973
No 40
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.52 E-value=2e-07 Score=67.72 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=31.1
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.||+||+|||+||+++++++.+ .++++.++|+++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~---------~G~~V~~v~~~~~ 35 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ---------QGYEVVGVFMKNW 35 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---------cCCeEEEEEEEcc
Confidence 4899999999999999999986 3789999999765
No 41
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.51 E-value=2e-07 Score=63.47 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=29.6
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|++|.+|||.||+++++++.+ .+.++.++|+|.|++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~---------~~~~v~al~~~YGq~ 36 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKK---------EGYEVYALTFDYGQR 36 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHH---------H-SEEEEEEEESSST
T ss_pred CEEEEeCCCHHHHHHHHHHHH---------cCCeEEEEEEECCCC
Confidence 689999999999999998876 358999999999985
No 42
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.50 E-value=1e-07 Score=70.35 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeC
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDD 48 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~ 48 (70)
++.-++|.|+|||||||.+|||++.++.+ +.+. ++.|+|+|-
T Consensus 24 f~~f~~VcVSFSGGKDS~lmLhL~~~~ar-----~~~~~~i~VlfiD~ 66 (407)
T COG3969 24 FNTFPRVCVSFSGGKDSGLMLHLVAEVAR-----ENGRDKISVLFIDW 66 (407)
T ss_pred HhcCCeEEEEecCCCchhHHHHHHHHHHH-----HhCCCceEEEEEcc
Confidence 34568999999999999999999999544 3343 699999993
No 43
>PRK08576 hypothetical protein; Provisional
Probab=98.49 E-value=1.7e-07 Score=70.21 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=31.1
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
.+++|+||||+||+++|+++.+. .+ ++.++|+|+|..
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~--------~~-~V~aV~iDTG~e 271 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKA--------FG-DVTAVYVDTGYE 271 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHh--------CC-CCEEEEeCCCCC
Confidence 48999999999999999999871 12 489999999973
No 44
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.48 E-value=2.7e-07 Score=62.14 Aligned_cols=35 Identities=26% Similarity=0.100 Sum_probs=30.3
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
|++++|||||||+++++++.+ .|+++.++++..+.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~---------~G~~v~~l~~~~~~ 35 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE---------EGHEVVALLNLTPE 35 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH---------cCCEEEEEEEEecC
Confidence 689999999999999999886 47899998888654
No 45
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.46 E-value=4.3e-07 Score=62.97 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=31.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+|++|+||||.||++++.++.+ . +.++.++++|.|.+
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~--------~-~~~v~alt~dygq~ 38 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ--------Q-YDEVHCVTFDYGQR 38 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh--------c-CCeEEEEEEEeCCC
Confidence 5899999999999999988875 2 35899999999974
No 46
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.46 E-value=2.9e-07 Score=61.25 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.7
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
++|++|||+||+++++++.+ .+.++.++|+|++.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~---------~g~~v~~~~~~~~~ 34 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD---------EGYEVHAITFDYGQ 34 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH---------cCCcEEEEEEECCC
Confidence 47999999999999998876 35789999999886
No 47
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.45 E-value=1.7e-07 Score=67.45 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=36.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
..|+++|+|||+||+++.-++.+ ..|-++.+++||||+++.
T Consensus 21 ~~kvi~alSGGVDSsv~a~L~~~--------AiGd~l~cvfVD~GLlR~ 61 (315)
T COG0519 21 DGKVILALSGGVDSSVAAVLAHR--------AIGDQLTCVFVDHGLLRK 61 (315)
T ss_pred CceEEEEecCCCcHHHHHHHHHH--------HhhcceEEEEecCCcccC
Confidence 57999999999999999988886 578899999999999653
No 48
>PRK08557 hypothetical protein; Provisional
Probab=98.44 E-value=2.5e-07 Score=68.81 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+..++++||||+||+++++++.+ .+.++.++|+|+|+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~---------~~~~i~vvfvDTG~e 218 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKE---------VIPDLEVIFIDTGLE 218 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH---------hCCCCEEEEEECCCC
Confidence 45799999999999999999886 234678899999974
No 49
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.44 E-value=3.4e-07 Score=67.52 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=31.3
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
|+||||||.||+++++++++ ..+.++.++|+|.|.
T Consensus 1 Vvva~SGGlDSsvll~~l~e--------~~~~eV~av~~d~Gq 35 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKE--------KGGYEVIAVTADVGQ 35 (385)
T ss_pred CEEEecCCHHHHHHHHHHHH--------hCCCeEEEEEEECCC
Confidence 68999999999999999987 356799999999996
No 50
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.42 E-value=4.8e-07 Score=67.22 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=33.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
.++|+||||||.||++++.++++ .|.++.++|+|.|..
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e---------~G~~Viavt~d~gq~ 39 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE---------RGYAVHTVFADTGGV 39 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH---------cCCcEEEEEEEeCCC
Confidence 46899999999999999999886 378999999999973
No 51
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.39 E-value=4e-07 Score=62.58 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
.+++++++|||+||+||||++.+ +. +.++.++++|+|..
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~-~~-------~~~i~vv~vDTg~~ 63 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSS-IS-------EPMIPVIFIDTLYH 63 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHH-hh-------CCCCCEEEEeCCCC
Confidence 46799999999999999999997 21 24688999999974
No 52
>PRK13795 hypothetical protein; Provisional
Probab=98.39 E-value=4.4e-07 Score=70.14 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+++|+|+||||+||+++|+++.+. ..++.++++|+|+.
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a---------~~~~~vvfiDTg~e 280 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREA---------LKDFKAFFNNTGLE 280 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHh---------CCCcEEEEEeCCCC
Confidence 468999999999999999999971 22478999999973
No 53
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.38 E-value=5.5e-07 Score=62.11 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..++|+||+|||+||+++++++.+ ..+.++.+++++++.
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~--------~~~~~~~~~~~~~~~ 59 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVE--------ALGEQNHALLLPHSV 59 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHH--------hhCCceEEEEECCcc
Confidence 467999999999999999998876 235588899998874
No 54
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.38 E-value=7.8e-07 Score=65.54 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=33.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
-..|+++++|||.||.++++++.+ .|+++.++|+|++
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~k---------rG~~V~~v~f~~g 215 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMK---------RGVEVIPVHIYMG 215 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHH---------cCCeEEEEEEEeC
Confidence 457999999999999999999986 4899999999977
No 55
>KOG2805|consensus
Probab=98.36 E-value=1.1e-06 Score=64.43 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=41.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCcccccCccccccCCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSKLNPNFGSVCPY 69 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~~~c~~ 69 (70)
|-...++|+||+|||+||.+.+++|+. .|+++..+|+-... ++ .++++.||+
T Consensus 1 ~p~~~~~VvvamSgGVDSsVaa~Ll~~---------~g~~v~gv~M~nWd-------~~-de~~s~cp~ 52 (377)
T KOG2805|consen 1 MPEKPDRVVVAMSGGVDSSVAARLLAA---------RGYNVTGVFMKNWD-------SL-DEFGSQCPA 52 (377)
T ss_pred CCcccceEEEEecCCchHHHHHHHHHh---------cCCCeeEEeeeccc-------cc-cccccCCCc
Confidence 345678999999999999999999986 58999999887552 22 456778876
No 56
>PRK13980 NAD synthetase; Provisional
Probab=98.32 E-value=9e-07 Score=61.63 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.++|+|++|||.||+++++++.+.+ .+.++.+++++++.
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~~-------~~~~v~av~~~~~~ 68 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKAL-------GKENVLALLMPSSV 68 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHh-------CccceEEEEeeCCC
Confidence 3789999999999999999998711 13689999999886
No 57
>PRK05370 argininosuccinate synthase; Validated
Probab=98.31 E-value=1.7e-06 Score=65.20 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..++||++|||||.|+++++..|++ + +++++++++|.|.
T Consensus 9 ~~~~KVvLAYSGGLDTSv~l~wL~e--------~-~~eVia~~aDvGQ 47 (447)
T PRK05370 9 PVGQRVGIAFSGGLDTSAALLWMRQ--------K-GAVPYAYTANLGQ 47 (447)
T ss_pred CCCCEEEEEecCCchHHHHHHHHHh--------c-CCeEEEEEEECCC
Confidence 4789999999999999999998887 3 8999999999995
No 58
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.29 E-value=1.5e-06 Score=63.69 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=28.7
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.||+||+|||+||++.+.+|++ .|+++..+|+...-
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~---------~G~~V~Gv~m~~~~ 36 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE---------QGYDVIGVTMRNWD 36 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH---------CT-EEEEEEEE-SS
T ss_pred CeEEEEccCCHHHHHHHHHHHh---------hcccceEEEEEEec
Confidence 4899999999999999999997 58999999999775
No 59
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.29 E-value=1.6e-06 Score=64.95 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=33.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
-.+|+++.+|||.||+++++++.+ .|+++.++|+|.|.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~k---------rG~~v~~l~f~~g~ 213 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMR---------RGSRVHYCFFNLGG 213 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHH---------cCCEEEEEEEecCC
Confidence 357999999999999999999875 37899999999886
No 60
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.28 E-value=1.6e-06 Score=65.24 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=33.1
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhc-ccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSH-KRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~-~~~~~~~~~v~vd~~~ 50 (70)
+..++|+|||||||+++|+++.+.+.. +. ....-.+.+++.|++.
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~-lp~e~~~k~v~VI~~DTgv 58 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAA-LPAEQRTKKIHVISTDTLV 58 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHh-ccccccCcceEEEECcCCC
Confidence 445799999999999999999984432 11 1112367889999996
No 61
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.24 E-value=1.5e-06 Score=59.73 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~~ 50 (70)
..++|+|++|||.||++++.++.+ ..+ .++.+++++.+.
T Consensus 22 ~~~~vvv~lSGGiDSs~~a~la~~--------~~~~~~v~~~~~~~~~ 61 (248)
T cd00553 22 GFKGVVLGLSGGIDSALVAALAVR--------ALGRENVLALFMPSRY 61 (248)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHH--------HhCcccEEEEECCCCC
Confidence 357899999999999999999987 223 688999999875
No 62
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.22 E-value=3e-06 Score=62.18 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-.++++++++|||.||+++++++.+ .|+++.++|++.
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k---------~G~~v~av~~~~ 210 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMK---------RGVEIEAVHFHS 210 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHH---------CCCEEEEEEEeC
Confidence 3568999999999999999999875 378999999964
No 63
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.5e-06 Score=61.94 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
...||+||+|||+||++.+++|++ .|.++..+|+..+.
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~---------QGyeViGl~m~~~~ 39 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE---------QGYEVIGLFMKNWD 39 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH---------cCCeEEEEEEEeec
Confidence 457999999999999999999997 48999999998665
No 64
>PRK06850 hypothetical protein; Provisional
Probab=98.17 E-value=2.9e-06 Score=64.66 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
...++|+|||||||+++|+++.+-+.+--.....-++.+++.|+++
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgv 79 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLV 79 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCC
Confidence 4458999999999999999998844320011112368899999996
No 65
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.15 E-value=3.2e-06 Score=59.20 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=30.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
+.+++++|||+||+|+|+++.+. ..++.++|+|+|.-
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~---------~~~~~vif~DTg~~ 76 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKA---------FPDFPVIFLDTGYH 76 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHh---------cCCCcEEEEeCCCc
Confidence 45899999999999999999982 22389999999974
No 66
>KOG2840|consensus
Probab=98.08 E-value=4.6e-06 Score=61.02 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=46.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCcCcccc
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSKSK 58 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~~~~~~ 58 (70)
++..+++|.++-|||+||+++.+++.. |.+ ++.+|.++.++-+|+|+ .+|.++.
T Consensus 47 l~~rge~v~igasGgkdstvlA~v~~~-Ln~--r~~~g~~l~Lls~degi-~gyrd~s 100 (347)
T KOG2840|consen 47 LFARGERVAIGASGGKDSTVLAYVLDA-LNE--RHDYGLRLFLLSIDEGI-RGYRDDS 100 (347)
T ss_pred ccCCCCccccccccchhHHHHHHHHHH-hhh--hcCCCceeeeeeccccc-cceeccH
Confidence 467899999999999999999999998 664 55689999999999996 7777653
No 67
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.07 E-value=5.4e-06 Score=48.01 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=28.0
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
|++++|||+||+++++++.+ .+ ..+.++.++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~-~~-----~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKR-LK-----SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHH-HH-----hcCCCEEEEEeH
Confidence 58999999999999999987 21 346788888887
No 68
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.00 E-value=1.6e-05 Score=59.20 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..+||++|||||.|.++.+.+|++ +++.++.++++|.|.
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e--------~~~~eVia~tadvGQ 41 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKE--------KGGAEVIAVTADVGQ 41 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHH--------hcCceEEEEEEeCCC
Confidence 468999999999999999998887 778999999999996
No 69
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.99 E-value=2e-05 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
..|.+|-+|||.||+++++++.+ -+.++.++++|.|.+.
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~---------~~~ev~alsfdYGQrh 40 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKK---------EGYEVHALTFDYGQRH 40 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHh---------cCCEEEEEEeeCCCCc
Confidence 35788999999999999998886 3589999999999854
No 70
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.98 E-value=1.4e-05 Score=59.27 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=29.2
Q ss_pred EEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 9 LVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 9 lva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
++|||||.||++++.+|++ +.+.+++++++|.|.
T Consensus 1 VLAySGGLDTS~~l~~L~e--------~~~~~Via~~aDlGq 34 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKE--------EGGYEVIAVTADLGQ 34 (388)
T ss_dssp EEE--SSHHHHHHHHHHHH--------TTTEEEEEEEEESSS
T ss_pred CeeeCCChHHHHHHHHHHh--------hcCceEEEEEEECCC
Confidence 5899999999999999987 567999999999996
No 71
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2e-05 Score=53.52 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=31.7
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
++-+-|||||||+..+.+|.+ +|+++.+|+|+-|+..
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~k---------lgyev~LVTvnFGv~d 38 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDK---------LGYEVELVTVNFGVLD 38 (198)
T ss_pred ceEEEecCCCchhHHHHHHHH---------hCCCcEEEEEEecccc
Confidence 356789999999999888774 8999999999999854
No 72
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.81 E-value=2.7e-05 Score=54.09 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=31.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.++++|++|||.||++++.+..+-+ .+-++.+++++...
T Consensus 18 ~~~vVvglSGGiDSav~A~La~~Al-------g~~~v~~v~mp~~~ 56 (242)
T PF02540_consen 18 AKGVVVGLSGGIDSAVVAALAVKAL-------GPDNVLAVIMPSGF 56 (242)
T ss_dssp TSEEEEEETSSHHHHHHHHHHHHHH-------GGGEEEEEEEESST
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-------hhcccccccccccc
Confidence 4789999999999999999988722 12578999999665
No 73
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.80 E-value=6.8e-05 Score=51.11 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
..|+++.+|||.||.+.++++.+ .|.++.++|++..
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~k---------rG~~V~~l~f~~~ 38 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMK---------RGCEVIALHFDSP 38 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHC---------BT-EEEEEEEE-T
T ss_pred CceEEEEecCCccHHHHHHHHHH---------CCCEEEEEEEECC
Confidence 46899999999999999999884 5999999999943
No 74
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.73 E-value=0.00013 Score=48.29 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+...+|.+.+|||.||++++.++.+ ..+.++.+++++.+-
T Consensus 15 ~~~~~i~~~LSGGlDSs~i~~~~~~--------~~~~~~~~~t~~~~~ 54 (255)
T PF00733_consen 15 RSDKPIGILLSGGLDSSAIAALAAR--------QGGPPIKTFTIGFED 54 (255)
T ss_dssp GCTSEEEEE--SSHHHHHHHHHHHH--------TCCSEEEEEEEECSS
T ss_pred hcCCCEEEECCCChhHHHHHHHHHH--------hhCCceeEEEEEcCC
Confidence 4678999999999999999999986 467888999988664
No 75
>KOG1622|consensus
Probab=97.72 E-value=5.1e-05 Score=57.89 Aligned_cols=40 Identities=38% Similarity=0.384 Sum_probs=34.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGSIS 52 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~~~~ 52 (70)
..+|++++|||+||+++..++++ ..+ -++.++|+|.|+++
T Consensus 230 ~~~Vl~~vSGgvdStV~a~Ll~~--------alg~~R~~ai~vdNG~mr 270 (552)
T KOG1622|consen 230 DYKVLVAVSGGVDSTVCAALLRR--------ALGPDRVHAIHVDNGFMR 270 (552)
T ss_pred ccceEEEecCCchHHHHHHHHHH--------hhCCCceEEEEecccchh
Confidence 47899999999999999999987 244 68999999999964
No 76
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.69 E-value=6.3e-05 Score=51.33 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=24.5
Q ss_pred EEEecCchhHHHHHHHHHHhhhhhhcccCCceEE-EEEEeC
Q psy3866 9 LVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC-AIYIDD 48 (70)
Q Consensus 9 lva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~-~v~vd~ 48 (70)
+++||||+||+++++++.+ .|.++. ++|++.
T Consensus 1 ~vl~SGGkDS~~al~~a~~---------~G~~v~~l~~~~~ 32 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALE---------EGHEVRCLITVVP 32 (218)
T ss_pred CeeecCcHHHHHHHHHHHH---------cCCEEEEEEEecc
Confidence 3689999999999998886 367875 567763
No 77
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.65 E-value=8.7e-05 Score=50.34 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
....+|.+++|||.||++++.++.+ . .+.++.+++++.+.
T Consensus 13 ~~~~~v~~~LSGGlDSs~va~~~~~-~-------~~~~~~~~~~~~~~ 52 (269)
T cd01991 13 RSDVPVGVLLSGGLDSSLVAALAAR-L-------LPEPVKTFSIGFGF 52 (269)
T ss_pred ccCCceEEeecccHHHHHHHHHHHH-h-------hCCCCceEEEeeCC
Confidence 4577899999999999999999886 1 12235667776553
No 78
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.57 E-value=9.7e-05 Score=57.57 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC---ceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL---FSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~---~~~~~v~vd~~ 49 (70)
..++|+|++|||+||++++.++.+-++ +++ .++.++++ .+
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~-----~lg~~~~~v~~v~m-p~ 402 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMD-----RLGLPRKNILAYTM-PG 402 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHH-----hhCCCcceEEEEEC-CC
Confidence 368999999999999998888887322 234 78888888 55
No 79
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.50 E-value=0.00017 Score=52.35 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~~ 50 (70)
.++|+|++|||.||++++.++.+ ..+ .++.+++++.+.
T Consensus 33 ~~~VvVgLSGGIDSSvvaaLa~~--------a~g~~~v~av~~~~~~ 71 (326)
T PRK00876 33 RRGVVLGLSGGIDSSVTAALCVR--------ALGKERVYGLLMPERD 71 (326)
T ss_pred CCCEEEEccCCHHHHHHHHHHHH--------hhCCCcEEEEEecCCC
Confidence 35899999999999999998876 123 468888888664
No 80
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.48 E-value=0.00023 Score=49.27 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=19.1
Q ss_pred eEEEEecCchhHHHHHHHHHH
Q psy3866 7 KVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~ 27 (70)
|+++.|||||||+..++.+.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~ 22 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALE 22 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHH
Confidence 688999999999999998876
No 81
>PTZ00323 NAD+ synthase; Provisional
Probab=97.25 E-value=0.00029 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhh
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGM 29 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l 29 (70)
.++++||+|||.||++++.+..+.+
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~al 70 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAM 70 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998733
No 82
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.12 E-value=0.00073 Score=46.85 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=18.8
Q ss_pred eEEEEecCchhHHHHHHHHHH
Q psy3866 7 KVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~ 27 (70)
|+++.|||||||+..++.+.+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~ 22 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALK 22 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHH
Confidence 578899999999999998886
No 83
>PRK13981 NAD synthetase; Provisional
Probab=97.10 E-value=0.0008 Score=50.84 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~~ 50 (70)
.++++|++|||.||++++.++.+ .+| .++.++++....
T Consensus 280 ~~~~vvglSGGiDSa~~a~la~~--------a~g~~~v~~~~~p~~~ 318 (540)
T PRK13981 280 FPGVVLGLSGGIDSALVAAIAVD--------ALGAERVRAVMMPSRY 318 (540)
T ss_pred CCeEEEECCCCHHHHHHHHHHHH--------HhCcCcEEEEECCCCC
Confidence 47899999999999999998876 234 467888887543
No 84
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=97.02 E-value=0.0026 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.8
Q ss_pred eEEEEecCchhHHHHHHHHHH
Q psy3866 7 KVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~ 27 (70)
|+++-|||||||+..++.+.+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~ 22 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALR 22 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHH
Confidence 678889999999999988876
No 85
>KOG1706|consensus
Probab=96.98 E-value=0.0007 Score=50.02 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=36.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|.....+|++|+|||.|.++.|.+|.+ .|.++++..-|-|..
T Consensus 1 ~~~~~~~vVLAySGgLDTscil~WLke---------qGyeViay~AnvGQ~ 42 (412)
T KOG1706|consen 1 MMSSKKSVVLAYSGGLDTSCILAWLKE---------QGYEVIAYLANVGQK 42 (412)
T ss_pred CCCCCceEEEEecCCcCchhhhHHHHh---------cCceEEEeeccccch
Confidence 345668999999999999999988876 699999999998873
No 86
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.93 E-value=0.00093 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.0
Q ss_pred CCeEEEEecCchhHHHHHHHHHH
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
+.+++||+|||+||++-.-+++.
T Consensus 60 ~~kiaVA~SGG~DSsas~iilR~ 82 (255)
T COG1365 60 KPKIAVAYSGGVDSSASAIILRW 82 (255)
T ss_pred CceEEEEecCCcchHHHHHHHHh
Confidence 36999999999999998877774
No 87
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.67 E-value=0.0016 Score=49.31 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
++++++++|||.|+ +|+|++.+ .+.++.++++|+|...+
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~---------~~~~ipV~flDTG~lFp 153 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHL---------TGRPFRVFSLDTGRLNP 153 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHH---------hCCCCcEEEecCCCCCH
Confidence 45799999988886 57888876 34568999999997543
No 88
>PLN02309 5'-adenylylsulfate reductase
Probab=96.60 E-value=0.002 Score=48.70 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=29.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
++++++++|||.|+ +|+|++.+ .+.++.++++|+|...+
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~---------~~~~ipV~flDTG~lfp 148 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHL---------TGRPFRVFSLDTGRLNP 148 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHH---------hCCCCcEEEecCCCCCH
Confidence 46799999977776 67788775 34567899999997544
No 89
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=96.57 E-value=0.005 Score=43.05 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=24.4
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEE-EEEEe
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC-AIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~-~v~vd 47 (70)
|++.-+||||||...++...+ .|+++. ++++-
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~---------~G~eV~~Ll~~~ 34 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE---------EGHEVVYLLTVK 34 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH---------cCCeeEEEEEEe
Confidence 567789999999999988875 477765 34444
No 90
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.56 E-value=0.0047 Score=45.79 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=28.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
...+|.+.+|||.||++++.++.+ .. . ..++.+++++.+
T Consensus 252 ~~~~vg~~LSGGlDSs~iaa~a~~-~~----~--~~~~~~~t~~~~ 290 (467)
T TIGR01536 252 ADVPVGVLLSGGLDSSLVAAIARR-EA----P--RGPVHTFSIGFE 290 (467)
T ss_pred cCCceEEEecCChhHHHHHHHHHH-hc----C--CCCceEEEEecC
Confidence 456899999999999999998886 11 1 135667777654
No 91
>KOG0573|consensus
Probab=96.31 E-value=0.0079 Score=46.12 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
..+|.|-||||.|||+++.++.+.+. .+.++.++.|--
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~vp------~ne~IdLINVaF 287 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVVP------ENEPIDLINVAF 287 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhcC------CCCceeEEEeec
Confidence 47899999999999999999998443 234455555443
No 92
>KOG2594|consensus
Probab=96.27 E-value=0.0064 Score=45.34 Aligned_cols=46 Identities=30% Similarity=0.511 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhccc--CCceEEEEEE
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKR--ILFSVCAIYI 46 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~--~~~~~~~v~v 46 (70)
|..+.+.++++|+||..|++||+++.-.+++...++ .++.+.++.+
T Consensus 58 ~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~ 105 (396)
T KOG2594|consen 58 MGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVV 105 (396)
T ss_pred cCCcccceEEEecCCcchHhHHHHHHHHHHHhhhhhcCcCCceEEEEE
Confidence 345678999999999999999999995354433233 3455544433
No 93
>PRK00768 nadE NAD synthetase; Reviewed
Probab=95.96 E-value=0.0089 Score=42.54 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHh
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEG 28 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~ 28 (70)
....++|++|||.||.+.+.+..+-
T Consensus 37 g~~g~VlGlSGGIDSav~a~L~~~A 61 (268)
T PRK00768 37 GLKSLVLGISGGQDSTLAGRLAQLA 61 (268)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHH
Confidence 3578999999999999999888763
No 94
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=95.90 E-value=0.009 Score=42.55 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccC--CceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRI--LFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~--~~~~~~v~vd~~ 49 (70)
.+++++++|||.||++.+.+..+-+. +. ...+.++....+
T Consensus 25 ~k~~VlGiSGGiDSa~~~~La~~A~~-----~~~~~~~~~av~mP~~ 66 (268)
T COG0171 25 FKGVVLGLSGGIDSALVLALAVRALG-----KGDSKENVLAVRLPYG 66 (268)
T ss_pred CCCeEEEcccChHHHHHHHHHHHHhc-----cccchhheeeEECCCC
Confidence 47899999999999999999987332 21 123666666655
No 95
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=95.01 E-value=0.025 Score=37.74 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 15 SHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 15 G~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|.||+||||++.+ ...++.++++|+|..
T Consensus 2 ~~~s~Vll~L~~~---------~~~~~~vifvDTg~~ 29 (191)
T TIGR02055 2 GAEDVVLVDLAAK---------VRPDVKVFFLDTGRL 29 (191)
T ss_pred ChHHHHHHHHHHh---------cCCCCcEEEecCCCC
Confidence 7899999999997 234578999999974
No 96
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=94.21 E-value=0.046 Score=42.37 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhh
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGM 29 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l 29 (70)
..+|.+.+|||.||++++.++.+.+
T Consensus 225 dvpvgv~LSGGLDSSlIaala~~~~ 249 (578)
T PLN02549 225 DVPFGVLLSGGLDSSLVASIAARHL 249 (578)
T ss_pred CCceeEeecCCccHHHHHHHHHHhh
Confidence 4578999999999999999998733
No 97
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=94.07 E-value=0.12 Score=38.56 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
..|+++-+|||-||=|..+++-+ -|.++..+|.+.
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mk---------RG~~v~~v~f~~ 209 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMK---------RGVEVIPVHFGN 209 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHh---------cCCEEEEEEEcC
Confidence 56899999999999999998875 489999999963
No 98
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=93.84 E-value=0.081 Score=40.73 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
....|.+.+|||.||++++.++.+
T Consensus 257 ~d~~vg~~LSGGlDSs~Iaa~~~~ 280 (628)
T TIGR03108 257 ADVPLGAFLSGGVDSSAVVALMAG 280 (628)
T ss_pred cCCcceEeecCCccHHHHHHHHHH
Confidence 345788999999999999988875
No 99
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=93.84 E-value=0.1 Score=40.31 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
...+|.+.+|||.||++++.++.+
T Consensus 259 sd~pvg~~LSGGlDSs~Iaa~~~~ 282 (589)
T TIGR03104 259 ADVPVGVLLSGGLDSSLIVGLLAE 282 (589)
T ss_pred cCCceeEEecCCccHHHHHHHHHH
Confidence 456799999999999999988876
No 100
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=93.73 E-value=0.2 Score=29.11 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.5
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
++|+|+++|+..|--++....+ +. +..+.++.++|+.+..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~-la----~~~~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALE-LA----KRSGAEITLLHVIPPP 42 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHH-HH----HHHTCEEEEEEEEESC
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HH----HhhCCeEEEEEeeccc
Confidence 6899999999999999888887 33 3578899999998764
No 101
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=93.61 E-value=0.072 Score=40.99 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
...+|.+.+|||.||++++.++.+
T Consensus 226 sdvpvGv~LSGGLDSSlIaala~~ 249 (554)
T PRK09431 226 SDVPYGVLLSGGLDSSLISAIAKK 249 (554)
T ss_pred CCCceEEEcCCCccHHHHHHHHHH
Confidence 356789999999999999999987
No 102
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=93.41 E-value=0.084 Score=40.96 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
...+|.+.+|||.||++++.++.+
T Consensus 236 sdvpvGv~LSGGLDSSlIaala~~ 259 (586)
T PTZ00077 236 GDVPFGLFLSGGLDSSIVAAIVAK 259 (586)
T ss_pred CCCceEEEecCCchHHHHHHHHHH
Confidence 346789999999999999999987
No 103
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=93.12 E-value=0.27 Score=30.15 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEecCchhHHHHHHHHHHhhh
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQ 30 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~ 30 (70)
+|+++++||..|+.+..-+++.++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~ 25 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAK 25 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998655
No 104
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.64 E-value=0.13 Score=39.49 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
....|.+.+|||.||++++.++.+
T Consensus 229 advpvg~~lSGGlDSS~Iaa~a~~ 252 (542)
T COG0367 229 ADVPVGVFLSGGLDSSLIAAIAAE 252 (542)
T ss_pred cCCcEEEEeCCCccHHHHHHHHHH
Confidence 356789999999999999999998
No 105
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=92.36 E-value=0.14 Score=40.52 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.3
Q ss_pred CCCeEEEEecCchhHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLL 25 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll 25 (70)
..++++|++|||.||++.+.+.
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv 368 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIV 368 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHH
Confidence 3578999999999999866664
No 106
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=92.25 E-value=0.53 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=32.1
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+|+|+++++..+..++....+ +. +..+.++.++|+....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~-~a----~~~~~~i~~l~v~~~~ 39 (130)
T cd00293 1 RILVAVDGSEESERALRWAAR-LA----RRLGAELVLLHVVDPP 39 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHH-HH----HhcCCEEEEEEEecCC
Confidence 589999999999999988887 33 3568899999998664
No 107
>PRK09982 universal stress protein UspD; Provisional
Probab=92.00 E-value=0.38 Score=29.89 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=32.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.++||+|+.|+..|.-++....+ +. +..+.++.++||-..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~-lA----~~~~a~l~llhV~~~ 42 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALE-LA----RHNDAHLTLIHIDDG 42 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHH-HH----HHhCCeEEEEEEccC
Confidence 37899999999999888887776 33 457889999999754
No 108
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=91.82 E-value=0.43 Score=29.19 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=31.5
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+||||+.|...|..++....+ + .+..+.++.++|+...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~-~----a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALD-N----LATKGQTIVLVHVHPP 38 (146)
T ss_pred CEEEEecCccccHHHHHHHHH-h----ccCCCCcEEEEEeccC
Confidence 589999999999999988887 3 2456889999999754
No 109
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=91.80 E-value=0.4 Score=33.07 Aligned_cols=43 Identities=37% Similarity=0.490 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
||.++| |++++||+=.+.-++.++.. + |+.+.++.++|-+.+-
T Consensus 83 ~i~~~D-vviaiS~SGeT~el~~~~~~-a-----K~~g~~liaiT~~~~S 125 (202)
T COG0794 83 MITPGD-VVIAISGSGETKELLNLAPK-A-----KRLGAKLIAITSNPDS 125 (202)
T ss_pred CCCCCC-EEEEEeCCCcHHHHHHHHHH-H-----HHcCCcEEEEeCCCCC
Confidence 456666 88899999888888888886 4 4689999999998663
No 110
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=91.44 E-value=0.98 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=28.5
Q ss_pred eEEEEecCchhHHHHH-HHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGSHSSMALL-HLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll-~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
||++++.+|.-|+.|+ .-+++.++ +.|++....+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~-----~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALK-----ELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHH-----HTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHH-----hccCceEEEEec
Confidence 7999999998888888 77777554 467777777776
No 111
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=91.26 E-value=0.49 Score=28.13 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=32.4
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+|+|+++|+..|--++..... +. ++.+.++.++||..+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~-la----~~~~~~l~ll~v~~~~ 39 (124)
T cd01987 1 RILVCISGGPNAERLIRRAAR-LA----DRLKAPWYVVYVETPR 39 (124)
T ss_pred CEEEEECCCcchHHHHHHHHH-HH----HHhCCCEEEEEEecCc
Confidence 589999999999999888887 43 3578899999998764
No 112
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=90.98 E-value=0.84 Score=31.19 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEecCchhHHH-HHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 1 MMRPQDKVLVAFSGSHSSMA-LLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~-Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
|.-.+.||++++|||.-..- ...++++ |+ +.|.++.++.=.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~-L~-----k~G~~V~vv~T~ 42 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEK-LV-----DEGAEVTPIVSY 42 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHH-HH-----hCcCEEEEEECH
Confidence 33467899999999988888 5888887 54 347777766544
No 113
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=90.22 E-value=0.93 Score=26.75 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=31.3
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+|+|++.|..+|.-++..... +. +..+.++.++|+-..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~-la----~~~~~~v~ll~v~~~ 38 (132)
T cd01988 1 RILVPVANPNTARDLLELAAA-LA----RAQNGEIIPLNVIEV 38 (132)
T ss_pred CEEEecCCchhHHHHHHHHHH-Hh----hcCCCeEEEEEEEec
Confidence 589999999999999888887 43 356789999999764
No 114
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=89.97 E-value=1.3 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=27.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
..+|++++.+|..|+.++.-+++.++ +.|+++.+-+..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~-----~~gi~~~v~a~~ 40 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAE-----EYGVPVKIAAGS 40 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHH-----HCCCcEEEEEec
Confidence 46899999999999888877777554 356665554444
No 115
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=89.60 E-value=0.77 Score=28.48 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=27.0
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.||+++++|+....-..+++++ |+ +.|.++.++.=+
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~-L~-----~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRR-LK-----RAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHH-HH-----TTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHHHHHHHHH-Hh-----hCCCEEEEEECC
Confidence 4899999999999998899988 55 347887766543
No 116
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=89.38 E-value=1.3 Score=27.00 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.++||+|+.|...|..++....+ +. +..+.++.++|++..
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~-la----~~~~a~l~ll~v~~~ 42 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVS-MA----RPYNAKVSLIHVDVN 42 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHH-HH----HhhCCEEEEEEEccC
Confidence 47899999999999888877776 32 356789999999643
No 117
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=89.33 E-value=1.3 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=27.3
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.||++++.+|..|+.++.-+++.++ +.|+++.+-+..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~-----e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLK-----EQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHH-----HCCCceEEEEec
Confidence 4799999999999988888888554 356665554444
No 118
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=89.05 E-value=1.3 Score=29.62 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=27.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.||++++||+.-+.-..++++. |++ .+.++.++.=.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~-L~~-----~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQ-LTK-----RGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHH-HHH-----CCCEEEEEECh
Confidence 6899999999999999999987 552 46777665443
No 119
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=88.34 E-value=1.5 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=26.0
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
||++++.+|.-|+.++.-+++.++ +.|.++.+.+.+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~-----~~~~~~~v~~~~ 36 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAE-----KRGIDAEIEAVP 36 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHH-----HCCCceEEEEec
Confidence 589999999998888887777554 345655555554
No 120
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=88.15 E-value=1.6 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=27.6
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.||+|++||+.-..-..+++++ |+ +.+.++.++.=+
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~-L~-----~~g~~V~vi~T~ 36 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQ-LT-----KLGYDVTVLMTQ 36 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH-HH-----HCCCEEEEEECh
Confidence 4799999999988888888887 55 246777766544
No 121
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=88.10 E-value=1.3 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=27.9
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
||+|++|||.-..-..+++++ |+ +.|.++.++.=+
T Consensus 1 ~illgvtGsiaa~ka~~lir~-L~-----~~g~~V~vv~T~ 35 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEV-LK-----EAGVEVHLVISD 35 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHH-HH-----HCCCEEEEEECc
Confidence 689999999999999999998 54 346777766555
No 122
>PRK05920 aromatic acid decarboxylase; Validated
Probab=86.97 E-value=2.3 Score=29.11 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.+.||++++|||.-+.-...++++ |++ .|.++.++.=.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~-L~~-----~g~~V~vi~T~ 39 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLEC-LLA-----ADYEVHLVISK 39 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHH-HHH-----CCCEEEEEECh
Confidence 357999999999999888888888 542 36676666544
No 123
>KOG2316|consensus
Probab=86.95 E-value=1.3 Score=31.65 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=21.0
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEE
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI 44 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v 44 (70)
|++--+||||||..-+.-..+ .|-+++++
T Consensus 2 rvvaLiSGGKDScynmm~cv~---------~gHeiVaL 30 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVR---------LGHEIVAL 30 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHH---------cCCeeeee
Confidence 567779999999877655553 57776654
No 124
>PRK10490 sensor protein KdpD; Provisional
Probab=86.94 E-value=1.8 Score=34.98 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
-.++|+||+||++.|-.|+.--.+ +. .+++.++.++||+..
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~r-lA----~~~~a~~~~l~V~~~ 289 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAAR-LA----ARLGSVWHAVYVETP 289 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHH-HH----HhcCCCEEEEEEecC
Confidence 467899999999999888777666 43 468899999999976
No 125
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=86.09 E-value=3.4 Score=25.30 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=24.8
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEE
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 45 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~ 45 (70)
.||++.+++|..|..|+.-+++.. ++.+.+..+-+
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~-----~~~gi~~~V~A 38 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQA-----EKYEVPVIIEA 38 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHH-----HHCCCCEEEEE
Confidence 589999999999999996665523 24555554444
No 126
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=85.90 E-value=2.2 Score=28.79 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.1
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.||++++|||.-+.-..+++++ |++ ..|.++.++.-.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~-L~k----~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQV-LRD----VGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHH-HHh----hcCCeEEEEECH
Confidence 4899999999999999999998 542 246676666544
No 127
>KOG3425|consensus
Probab=85.83 E-value=4.9 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=36.4
Q ss_pred CCCCeEEEEecCch----------hHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 3 RPQDKVLVAFSGSH----------SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 3 ~~~~kvlva~SGG~----------DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
..+++|.+.|+|++ |-.+..-++.+.++ +.+-++.+||++-|-+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk-----~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK-----HAPEDVHFVHVYVGNR 76 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH-----hCCCceEEEEEEecCC
Confidence 46788999999999 77888888888554 5678899999999864
No 128
>PRK10116 universal stress protein UspC; Provisional
Probab=85.22 E-value=2.5 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
..+|++++.+..+|..++....+ |. ++.+.++.++|+-
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~-lA----~~~~a~l~ll~v~ 40 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVS-IA----RPVNGKISLITLA 40 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHH-HH----HHhCCEEEEEEEc
Confidence 57899999999999888877776 43 3567888888884
No 129
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=84.12 E-value=3.2 Score=30.85 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.+.||++++||+....-.+.++++ |+ +.|.++.++.=.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~-L~-----~~g~~V~vv~T~ 39 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRE-LV-----RQGAEVKVIMTE 39 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHH-HH-----hCCCEEEEEECH
Confidence 467999999999999999999987 54 246777665433
No 130
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=83.26 E-value=4.2 Score=23.45 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=27.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.++|++-+..|..|..+...|++ .|++ +.++..|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~---------~G~~--~~~l~GG~ 95 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAE---------RGYD--VDYLAGGM 95 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH---------cCce--eEEeCCcH
Confidence 4567888888888888877777764 5787 66677665
No 131
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=81.80 E-value=4.5 Score=27.34 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSIS 52 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~~ 52 (70)
...++.+|+|||..=..+...|.+ ..+..+ ++.+..+|+-+.+
T Consensus 21 ~~~~~~l~lsGGstp~~~y~~L~~------~~~i~w~~v~~f~~DEr~Vp 64 (219)
T cd01400 21 KRGRFSLALSGGSTPKPLYELLAA------APALDWSKVHVFLGDERCVP 64 (219)
T ss_pred hcCeEEEEECCCccHHHHHHHhcc------ccCCCCceEEEEEeeccccC
Confidence 456899999999887777776664 113454 6788999988743
No 132
>KOG0571|consensus
Probab=81.01 E-value=3.2 Score=32.27 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=27.8
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
-++-+-+|||.||+..+.++.+.+++.... .+.++....|-
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~-~~~~lhsFaIG 266 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAA-RGSKLHSFAIG 266 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhh-cCCCceEEEec
Confidence 356677899999999999988767762211 25555555553
No 133
>KOG2644|consensus
Probab=80.95 E-value=0.62 Score=33.71 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=30.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc---eEEEEEEeCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF---SVCAIYIDDGS 50 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~---~~~~v~vd~~~ 50 (70)
..++.+|-||+|-+++++++...+++....++.+ .+..+|++..-
T Consensus 83 E~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~ 130 (282)
T KOG2644|consen 83 EEMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVED 130 (282)
T ss_pred HHHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCC
Confidence 4567889999999999999988676532222222 34578887553
No 134
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=80.37 E-value=3.6 Score=33.95 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=35.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
-.++|+|++||+..|--+..-..+ +. .+++.++.++||+.+-
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~R-lA----~~~~a~~~av~v~~~~ 288 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAAR-LA----SRLHAKWTAVYVETPE 288 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHH-HH----HHhCCCeEEEEEeccc
Confidence 358999999999999988877776 43 4688899999999764
No 135
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=80.18 E-value=4.9 Score=29.96 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.+.||++++||+.-..-..++++. |+ +.|.++.++.=.
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~-L~-----~~g~~V~vv~T~ 42 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRR-LR-----KAGADVRVVMTE 42 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH-HH-----hCCCEEEEEECH
Confidence 467999999999988888888887 54 346777665533
No 136
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=78.58 E-value=5.1 Score=27.44 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=25.1
Q ss_pred eEEEEecCchhH-HHHHHHHHHhhhhhhcccC-CceEEEEEEe
Q psy3866 7 KVLVAFSGSHSS-MALLHLLQEGMQLSSHKRI-LFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS-~~Ll~ll~~~l~~~~~~~~-~~~~~~v~vd 47 (70)
||++++||+..+ .-.++++++ |++ .+ |.++.++.=+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~-L~~----~~~g~~V~vv~T~ 38 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKE-LKR----EIEELRVSTFVSR 38 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHH-HHh----hcCCCeEEEEECh
Confidence 689999998888 477788877 542 21 5666666544
No 137
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=77.39 E-value=8 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.4
Q ss_pred CeEEEEecCchhHHHHH-HHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALL-HLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll-~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.||++|+||+.-+.... .++++ |. +.|.++.++.=+.+
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~-L~-----~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEK-LV-----DEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHH-HH-----hCcCEEEEEEchhH
Confidence 47999999998888885 88887 54 34778777665543
No 138
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=77.33 E-value=9.5 Score=22.68 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=25.5
Q ss_pred eEEEEecCchhHHHH-HHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMAL-LHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~L-l~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
||++++..|.-|+.+ ..-+++.++ +.|.++.+.+++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~-----~~gi~~~v~~~~~ 41 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQ-----SHNIPVELIQCRV 41 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHH-----HCCCeEEEEEecH
Confidence 799999999866555 577777454 3566666666553
No 139
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=77.16 E-value=7.8 Score=26.49 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSIS 52 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~~ 52 (70)
...++.+|+|||.-=..+...|.+ .+..+ ++.+..+|+-+.+
T Consensus 26 ~~~~~~lalsGGstp~~~y~~L~~-------~~i~w~~v~~f~~DER~Vp 68 (233)
T TIGR01198 26 ERGQFSLALSGGRSPIALLEALAA-------QPLDWSRIHLFLGDERYVP 68 (233)
T ss_pred hcCcEEEEECCCccHHHHHHHHhh-------CCCCcceEEEEEecccccC
Confidence 456799999999887777777775 24554 6788999987743
No 140
>PRK15005 universal stress protein F; Provisional
Probab=77.10 E-value=7.8 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=27.3
Q ss_pred CeEEEEecCchhH--HHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSS--MALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS--~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.+||+|+-|...| .-++....+ + .+..+.++.++|+-+.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~-l----a~~~~~~l~ll~v~~~ 43 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEA-E----AKIDDAEVHFLTVIPS 43 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHH-H----HhccCCeEEEEEEEcc
Confidence 6899999998875 344444443 2 2457889999999764
No 141
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=75.71 E-value=5.2 Score=25.00 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEE
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 45 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~ 45 (70)
++++| ++|++|.+=.|-.++..+.. .++.|..+.+++
T Consensus 101 ~~~gD-vli~iS~SG~s~~vi~a~~~------Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGD-VLIVISNSGNSPNVIEAAEE------AKERGMKVIALT 137 (138)
T ss_dssp --TT--EEEEEESSS-SHHHHHHHHH------HHHTT-EEEEEE
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHH------HHHCCCEEEEEe
Confidence 34566 77788887777777777776 345688887775
No 142
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.56 E-value=9.3 Score=29.38 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
+.+|+++++||.-..-..+++++ |+ +.|.++.++.=.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~-L~-----k~G~~V~VvmT~ 106 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRR-LK-----ERGAHVRCVLTK 106 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHH-HH-----hCcCEEEEEECc
Confidence 67899999999999999999987 54 357777666544
No 143
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=73.92 E-value=9.8 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAF-SGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~-SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.++|++-+ +||.-|..+..+|+. .|++ +..++-|+
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~---------~G~~--v~~L~GG~ 121 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLES---------LGID--VPLLEGGY 121 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHH---------cCCc--eeEeCCcH
Confidence 4567888888 478888877766654 5775 66777775
No 144
>KOG2303|consensus
Probab=72.78 E-value=4.3 Score=32.25 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.1
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhh
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLS 32 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~ 32 (70)
..-..+++|||.||.+.+.++.. +.++
T Consensus 349 ~aGfflPLSGG~DSsatA~iV~s-MC~~ 375 (706)
T KOG2303|consen 349 QAGFFLPLSGGVDSSATAAIVYS-MCRQ 375 (706)
T ss_pred CCceEEecCCCccchHHHHHHHH-HHHH
Confidence 35678999999999988877765 5554
No 145
>PLN02360 probable 6-phosphogluconolactonase
Probab=72.73 E-value=11 Score=26.33 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSIS 52 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~~ 52 (70)
.+..++-+|+|||. ..-++..|.+ . ....++.+ ++.+..+|+-+.+
T Consensus 39 ~~~~~~~lalsGGS-~~~~~~~L~~-~--~~~~~idW~~v~~f~~DER~Vp 85 (268)
T PLN02360 39 KERGVFAIALSGGS-LISFMGKLCE-A--PYNKTVDWAKWYIFWADERVVA 85 (268)
T ss_pred HhCCcEEEEECCCC-HHHHHHHHhc-c--ccccCCCCceEEEEeeecccCC
Confidence 34568999999995 3333333332 0 01224555 5889999988744
No 146
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=71.60 E-value=8 Score=27.96 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.5
Q ss_pred eEEEEecCc-hhHHHHHHHHHHhhhhhhcccCCceEEEEE
Q psy3866 7 KVLVAFSGS-HSSMALLHLLQEGMQLSSHKRILFSVCAIY 45 (70)
Q Consensus 7 kvlva~SGG-~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~ 45 (70)
.|.|+++|| .=|.+++..|.+.|++ .+..+.+-|
T Consensus 244 tIaiGCTGG~HRSV~iae~La~~L~~-----~~~~v~v~H 278 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAERLAERLRE-----KGYTVVVRH 278 (284)
T ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHh-----cCCcceEEc
Confidence 689999999 6899999999987763 455555444
No 147
>PRK15456 universal stress protein UspG; Provisional
Probab=69.67 E-value=16 Score=22.10 Aligned_cols=39 Identities=5% Similarity=-0.047 Sum_probs=28.0
Q ss_pred CCeEEEEecCch--hHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSH--SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~--DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.++||+|+.|+. .|.-++....+ +. +.. .++.++|+-..
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~-la----~~~-~~l~llhv~~~ 42 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEF-LA----QDD-GVIHLLHVLPG 42 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHH-HH----hcC-CeEEEEEEecC
Confidence 368999999984 57777777766 43 233 48999998764
No 148
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=68.22 E-value=19 Score=26.61 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=32.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccC--CceEEEEEEeCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRI--LFSVCAIYIDDG 49 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~--~~~~~~v~vd~~ 49 (70)
...+|||||+.|..-|.-.+.-..+ +. ++. +.++.++||-..
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~Aie-lA----~~~g~~AeL~lL~Vv~~ 46 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVE-SA----EEAAETPTVHLVAAASG 46 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHH-HH----HhcCCCCEEEEEEEecC
Confidence 4568999999999999888877776 33 343 589999998653
No 149
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=68.03 E-value=9.5 Score=26.30 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~ 50 (70)
..++++.+++|||..-.-+...|.+... ..++.+ ++.+..+|+-+
T Consensus 30 ~~~~~~~i~lsgG~tP~~~y~~L~~~~~---~~~i~w~~v~if~~DEr~ 75 (253)
T PTZ00285 30 TSDRPFVLGLPTGSTPLPTYQELIRAYR---EGRVSFSNVVTFNMDEYV 75 (253)
T ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHHh---hcCCchhHeEEECCcEEe
Confidence 3467899999999887777777765222 234555 57888888865
No 150
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=67.28 E-value=17 Score=20.69 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.++|++-+.+|..|..++..+++ .|++ .+..++.|+
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~---------~G~~-~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLA---------LGGK-PVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHH---------cCCC-CEEEeCCCH
Confidence 3456788888888888776655543 5664 345566664
No 151
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=66.84 E-value=21 Score=20.35 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=24.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+++|++-+..|..|......|++ .|++ +..++.|+
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~---------~G~~--v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQ---------MGWE--VYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHH---------cCCE--EEEecCcH
Confidence 45788888888888776666643 6787 56677765
No 152
>PRK07667 uridine kinase; Provisional
Probab=65.88 E-value=18 Score=23.62 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=29.4
Q ss_pred CCCeEEEEecCch--hHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSH--SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~--DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.+.+|+++|++ --+.+.+.|.+.+. +.+.++.+++.|.-+
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~-----~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMK-----QEGIPFHIFHIDDYI 57 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCcEEEEEcCccc
Confidence 3567899999863 33566677776454 357788999999754
No 153
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=65.45 E-value=22 Score=20.04 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+.+.++|++-++.|..|......|++ .|+ .+..++.|+
T Consensus 48 ~~~~~~vvl~c~~g~~a~~~a~~L~~---------~G~--~v~~l~GG~ 85 (90)
T cd01524 48 LPKDKEIIVYCAVGLRGYIAARILTQ---------NGF--KVKNLDGGY 85 (90)
T ss_pred cCCCCcEEEEcCCChhHHHHHHHHHH---------CCC--CEEEecCCH
Confidence 34567888888888887777665553 577 466677775
No 154
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=65.12 E-value=9.7 Score=25.32 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSI 51 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~ 51 (70)
...++.||+|||.--..+...|.+ ..+ .+..+ ++.+..+|+-+.
T Consensus 19 ~~~~~~i~LsgGstp~~~y~~L~~-~~~---~~i~w~~v~~~~~DEr~v 63 (199)
T PF01182_consen 19 ERGRAVIALSGGSTPKPLYQELAK-LHK---ERIDWSRVHFFNVDERVV 63 (199)
T ss_dssp HCSSEEEEE--SCTHHHHHHHHHH-HHH---TCSCGGGEEEEESEEESS
T ss_pred HCCCEEEEEcCCHHHHHHHHHHhh-hcc---ccCChhHeEEEeCccccc
Confidence 457799999999988888888887 221 23454 688999998774
No 155
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=64.94 E-value=16 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
.+.+|+|++|||....=.+++.++ |+ +-|.++.++.-.+
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~-L~-----~~ga~v~vvmt~~ 41 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRL-LR-----RSGAEVRVVMTES 41 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHH-Hh-----hCCCeeEEEcchh
Confidence 345899999999988777888887 54 3577877776654
No 156
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=64.43 E-value=18 Score=24.16 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=23.8
Q ss_pred eEEEEecCchhHHH-HHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGSHSSMA-LLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG~DS~~-Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
||+++++|+-+... ...++.+ +++ +.|.++.++.=.
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~-L~~----~~g~eV~vv~S~ 37 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKD-VKN----RYGDEIDVFLSK 37 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHH-HHH----hcCCEEEEEECH
Confidence 68999999977766 6666666 442 346666655433
No 157
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=64.18 E-value=19 Score=25.05 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCCCeEEEEecCchhH--HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSS--MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS--~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+...++|+++||+-| +.++..+.+.+. +-++.+++-|.-.
T Consensus 4 ~~~~~iiIgIaG~SgSGKTTva~~l~~~~~-------~~~~~~I~~D~YY 46 (218)
T COG0572 4 KPEKVIIIGIAGGSGSGKTTVAKELSEQLG-------VEKVVVISLDDYY 46 (218)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHhC-------cCcceEeeccccc
Confidence 3445599999998655 344444444121 1377888887554
No 158
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=64.00 E-value=4.8 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCeEEEEecCchhHHHH-HHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMAL-LHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~L-l~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|+|.+|=|-=+..- ...+.+..+ ...++++ -++++|.|||-
T Consensus 42 ~sPvIiq~S~g~~~y~gg~~~~~~~v~-~~a~~~~-vPV~lHlDHg~ 86 (286)
T COG0191 42 KSPVIIQFSEGAAKYAGGADSLAHMVK-ALAEKYG-VPVALHLDHGA 86 (286)
T ss_pred CCCEEEEecccHHHHhchHHHHHHHHH-HHHHHCC-CCEEEECCCCC
Confidence 45678887755332222 222222111 1234677 56899999995
No 159
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=63.59 E-value=25 Score=24.32 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEE
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 45 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~ 45 (70)
.+.+|+|+++||.--.=..+++++ |+ + +.++.++.
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~-L~-----~-g~~V~Vvm 52 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHC-FS-----E-WAEVRAVV 52 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHH-hc-----C-CCeEEEEE
Confidence 357899999998888888888876 43 2 45555543
No 160
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=61.70 E-value=28 Score=19.79 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=25.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
...++|++.+.+|.-|..+...|.+ .|+. .+..++.|+
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~---------~g~~-~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAA---------ISAG-EAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHH---------cCCc-cEEEeeCCH
Confidence 3457888888898887777666664 3554 455566664
No 161
>KOG3147|consensus
Probab=61.34 E-value=29 Score=24.87 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=26.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~ 50 (70)
....++-|++|||. |..+|.+.|....+....+ +..+.++|+-+
T Consensus 37 ~~~g~F~i~lSGGS----Li~~L~~~l~~~~~~~i~w~kW~if~~DER~ 81 (252)
T KOG3147|consen 37 KKRGRFTLALSGGS----LIQVLSKLLESPYQDDIDWSKWHIFFVDERV 81 (252)
T ss_pred hcCCeEEEEEcCCc----HHHHHHHHhcccccCCCCccceEEEEEeccc
Confidence 35678999999994 3344444232101122333 57888999876
No 162
>PRK11175 universal stress protein UspE; Provisional
Probab=58.78 E-value=16 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.8
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEE
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYI 46 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~v 46 (70)
.++|+|++.|...|-..+....+ +. ++.+.++.++|+
T Consensus 3 ~~~ILv~~D~s~~~~~al~~a~~-lA----~~~~a~l~ll~v 39 (305)
T PRK11175 3 YQNILVVIDPNQDDQPALRRAVY-LA----QRNGGKITAFLP 39 (305)
T ss_pred cceEEEEcCCCccccHHHHHHHH-HH----HhcCCCEEEEEe
Confidence 46899999999998888777766 33 356778888876
No 163
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=57.96 E-value=31 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~ 50 (70)
.+++.+++|||..-..+...|.+... ..++.+ ++.+..+|+-+
T Consensus 32 ~~~~~i~lsgGstP~~~y~~L~~~~~---~~~i~w~~v~~f~~DEr~ 75 (259)
T TIGR00502 32 ARPFVLGLPTGGTPIGTYKQLIELHQ---AGKISFQNVTTFNMDEYA 75 (259)
T ss_pred cCceEEEEcCCCChHHHHHHHHHHhh---ccCCchhHeEEEeCeecC
Confidence 56789999999888888888875111 234555 58889999875
No 164
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=56.46 E-value=13 Score=27.18 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
++.+.|++++|| |.++++..+..
T Consensus 99 i~~~pKifiGyS---DiTall~ai~~ 121 (313)
T COG1619 99 IRNHPKIFIGYS---DITALLLAILA 121 (313)
T ss_pred HhcCCceEEEec---HHHHHHHHHHH
Confidence 466789999998 99998777664
No 165
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=56.07 E-value=33 Score=23.62 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=28.1
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.|++|++||..--..-+.++.. |+ ..+.++.++.-.
T Consensus 3 ~riivgisGASG~iygvrlLe~-L~-----~~~~e~hlviS~ 38 (191)
T COG0163 3 KRIIVGISGASGAIYGVRLLEV-LR-----ELGVETHLVISK 38 (191)
T ss_pred cEEEEEEeccccHHHHHHHHHH-HH-----hcCceEEEEEcH
Confidence 5899999999999999888887 65 345777666544
No 166
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=55.93 E-value=28 Score=19.97 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..+|++-+.+|.-|......|.+ .|++ .+..++.|+
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~---------~G~~-~v~~l~GG~ 96 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKE---------RGFK-NVYQLKGGI 96 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHH---------hCCc-ceeeechhH
Confidence 456788888888888877766654 4664 344566654
No 167
>KOG2862|consensus
Probab=54.93 E-value=18 Score=27.19 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
++.|+|+|++. +-|.=|--..++.++ +|+++.++.-|-|.
T Consensus 88 ~lePgd~vLv~-~~G~wg~ra~D~~~r---------~ga~V~~v~~~~G~ 127 (385)
T KOG2862|consen 88 LLEPGDNVLVV-STGTWGQRAADCARR---------YGAEVDVVEADIGQ 127 (385)
T ss_pred hcCCCCeEEEE-EechHHHHHHHHHHh---------hCceeeEEecCccc
Confidence 36799999884 556556555666654 89999999888774
No 168
>PRK11175 universal stress protein UspE; Provisional
Probab=53.77 E-value=35 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCCeEEEEecCchhH-------HHHHHHHHHhhhhhhcccC-CceEEEEEEeC
Q psy3866 4 PQDKVLVAFSGSHSS-------MALLHLLQEGMQLSSHKRI-LFSVCAIYIDD 48 (70)
Q Consensus 4 ~~~kvlva~SGG~DS-------~~Ll~ll~~~l~~~~~~~~-~~~~~~v~vd~ 48 (70)
+..+|++|+.|+..+ ..++....+ + .+.. +.++.++|+..
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~-l----a~~~~~a~l~ll~v~~ 198 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAID-L----AEQLNHAEVHLVNAYP 198 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHH-H----HhhCcCCceEEEEEec
Confidence 457899999988653 344555554 2 2345 77899999864
No 169
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=53.73 E-value=34 Score=24.99 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=25.7
Q ss_pred eEEEEecCc-hhHHHHHHHHHHhhhhhhcccCCceEEEEEE
Q psy3866 7 KVLVAFSGS-HSSMALLHLLQEGMQLSSHKRILFSVCAIYI 46 (70)
Q Consensus 7 kvlva~SGG-~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~v 46 (70)
.|.++++|| .-|.+++.-+.+.+++ +...++.+-|=
T Consensus 245 TIaIGCTGGqHRSV~iae~La~~l~~----~~~~~v~v~HR 281 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAEQLAEYLRA----RGKYNVQVRHR 281 (286)
T ss_pred EEEEccCCCccchHHHHHHHHHHHHh----ccCceEEEeeh
Confidence 588999999 5788888888876653 34445555553
No 170
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=52.61 E-value=55 Score=20.40 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.3
Q ss_pred CeEEEEecCchhHHHHHHHHHH
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
.+|++.+|+|..++.|..=+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 4799999999999998887777
No 171
>PRK06696 uridine kinase; Validated
Probab=51.55 E-value=43 Score=22.27 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCCeEEEEecCchh--HHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHS--SMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~D--S~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
...+.+|++||++- -+.++..|.+.|. ..|.++..++.|.-+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~-----~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK-----KRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecccccc
Confidence 45688999998643 3556667766453 235677777777554
No 172
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=51.21 E-value=27 Score=19.73 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=24.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.++|++-+.+|..|......|.+ .|++ .+.+++.|+
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~---------~G~~-~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQD---------MGLK-PVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH---------cChH-HhEeecCcH
Confidence 4567888888788777666655554 4655 234666665
No 173
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=49.69 E-value=51 Score=19.16 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=24.7
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..+|++-+.+|..|......|++ .|++-.+.+++.|+
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~---------~G~~~~v~~l~gG~ 102 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLIN---------AGLPNPVAALRNGT 102 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHH---------CCCCcceeEecCCH
Confidence 45777778788888766666654 56642356677775
No 174
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=49.30 E-value=53 Score=20.92 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=25.6
Q ss_pred EEEEecCc-hhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 8 VLVAFSGS-HSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 8 vlva~SGG-~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
|++..||. .+.+..+..+++||++...+..+.++++|+-+
T Consensus 78 i~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~ 118 (158)
T cd05015 78 IVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDN 118 (158)
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 33455565 88889999999888753211245566677664
No 175
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=49.07 E-value=42 Score=23.95 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=26.2
Q ss_pred eEEEEecCc-hhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGS-HSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG-~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.|.|++.|| .=|.++..-|.+.|+ -++.+.+.|=|
T Consensus 247 ~i~igCtGG~HRSV~~~e~l~~~l~------~~~~v~~~Hrd 282 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAERLAERLS------KGYNVQVRHRD 282 (288)
T ss_pred EEEEecCCCcccHHHHHHHHHHHHh------CCCcEEEEeCc
Confidence 589999999 689999888888553 25666666644
No 176
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=48.91 E-value=47 Score=18.49 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
.+.++|++.+.+|..|..+...|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~ 78 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALRE 78 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHH
Confidence 4567899999999998887777775
No 177
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=46.63 E-value=28 Score=23.77 Aligned_cols=43 Identities=9% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~ 49 (70)
....+.+|+|||.-=..+...|.+..+ ..+..+ ++.+..+|+-
T Consensus 26 ~~~~~~l~lsgGstP~~~y~~L~~~~~---~~~l~w~~v~~f~~DE~ 69 (232)
T PRK09762 26 SKPDAVICLATGATPLLTYHYLVEKIH---QQQVDVSQLTFVKLDEW 69 (232)
T ss_pred HCCCeEEEECCCCCHHHHHHHHHHHHh---hcCCCHHHeEEEcCcEE
Confidence 345789999999888888777775111 234555 5788888885
No 178
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=46.26 E-value=41 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSI 51 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~ 51 (70)
.++.+.|++|||.-=..+...|.+ ... .. .+ ++.++.+|+-+.
T Consensus 18 ~~~~~~i~lsgGsTp~~~y~~L~~-~~~---~~-~w~~v~~f~~DEr~v 61 (169)
T cd00458 18 EKDDMVIGLGTGSTPAYFYKLLGE-KLK---RG-EISDIVGFPTDERYV 61 (169)
T ss_pred hCCCEEEEECCCccHHHHHHHHHh-hhh---hC-CccceEEEECccccC
Confidence 466789999999777777777765 211 11 33 678889998653
No 179
>PRK08526 threonine dehydratase; Provisional
Probab=46.06 E-value=34 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHHHhhh
Q psy3866 4 PQDKVLVAFSGS-HSSMALLHLLQEGMQ 30 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll~ll~~~l~ 30 (70)
++++|++-+||| .|...|..++.+.|-
T Consensus 294 ~~~~Vv~ilsGGnid~~~~~~i~~~~l~ 321 (403)
T PRK08526 294 KGKKIGVVLSGGNIDVQMLNIIIEKGLI 321 (403)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999 799988888887664
No 180
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=45.92 E-value=42 Score=20.07 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+..+|++-+.+|.-|...+..|++ .|++-.+..++.|+
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~---------~G~~~~v~~l~GG~ 108 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKE---------LGLERFVRDIIGGL 108 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHH---------cCCccceeeecchH
Confidence 4467788888888888766666664 57743456667775
No 181
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=45.71 E-value=12 Score=27.00 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=21.9
Q ss_pred CCeEEEEecCchhHHH----HHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMA----LLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~----Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-... +..++.. + .++.+. ++++|.||+.
T Consensus 42 ~sPvIlq~s~~~~~~~~~~~~~~~~~~-~----a~~~~V-PValHLDHg~ 85 (286)
T PRK12738 42 RSPVILAGTPGTFKHIALEEIYALCSA-Y----STTYNM-PLALHLDHHE 85 (286)
T ss_pred CCCEEEEcCcchhhhCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 4567777766532211 2223333 2 234444 6889999995
No 182
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=45.45 E-value=62 Score=18.92 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=24.5
Q ss_pred CCCCCeEEEEecCch--hHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 2 MRPQDKVLVAFSGSH--SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 2 i~~~~kvlva~SGG~--DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+.+.++|++-+++|. .|..+...+++ .|++ +..++.|+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~---------~G~~--v~~l~GG~ 100 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAE---------LGFP--VKEMIGGL 100 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHH---------cCCe--EEEecCCH
Confidence 345678888888874 56666555554 5776 34667775
No 183
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=44.99 E-value=51 Score=22.19 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
-+++++|++-.|--++..++. . ++.|.++.+++=..+
T Consensus 111 Dvli~iS~SG~s~~v~~a~~~-A-----k~~G~~vI~IT~~~~ 147 (196)
T PRK10886 111 DVLLAISTRGNSRDIVKAVEA-A-----VTRDMTIVALTGYDG 147 (196)
T ss_pred CEEEEEeCCCCCHHHHHHHHH-H-----HHCCCEEEEEeCCCC
Confidence 366667666555556667765 3 356888888886533
No 184
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=43.63 E-value=26 Score=18.57 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.6
Q ss_pred CCCCCCeEEEEecCch
Q psy3866 1 MMRPQDKVLVAFSGSH 16 (70)
Q Consensus 1 ~i~~~~kvlva~SGG~ 16 (70)
++++|+-|+.|+||-+
T Consensus 1 vl~pG~~V~CAVTg~~ 16 (42)
T PF09866_consen 1 VLSPGSFVRCAVTGQP 16 (42)
T ss_pred CccCCCEEEEEeeCCc
Confidence 4789999999999975
No 185
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=43.38 E-value=33 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDD 48 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~ 48 (70)
...+..+++|||..-..+...|.+..+ ....+ ++.+..+|+
T Consensus 26 ~~~~~~l~lsgG~tp~~~y~~L~~~~~----~~~~w~~v~~f~~DE 67 (239)
T PRK12358 26 KTKRVNLAITAGSTPKGMYEYLITLVK----GKAWYDNVHYYNFDE 67 (239)
T ss_pred hCCCeEEEECCCCCHHHHHHHHHHHHh----cCCCHHHcEEEeccc
Confidence 456789999999888888888876222 12223 678888998
No 186
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=42.90 E-value=21 Score=20.65 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=18.1
Q ss_pred cCchhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 13 SGSHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
.|+.||+-++.++.. +.+ ++|+++
T Consensus 31 ~g~lDSl~~veli~~-lE~----~fgi~i 54 (78)
T PRK05087 31 EGILDSMGTVELLVE-LEN----RFDIEV 54 (78)
T ss_pred ccCcchHHHHHHHHH-HHH----HhCCcc
Confidence 467899999999998 653 566543
No 187
>PRK00982 acpP acyl carrier protein; Provisional
Probab=42.70 E-value=18 Score=20.10 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=15.1
Q ss_pred cCchhHHHHHHHHHHhhhh
Q psy3866 13 SGSHSSMALLHLLQEGMQL 31 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~ 31 (70)
..|.||+..+.++.+ +.+
T Consensus 32 dlglDSl~~~~li~~-le~ 49 (78)
T PRK00982 32 DLGADSLDTVELVMA-LEE 49 (78)
T ss_pred hcCCCHHHHHHHHHH-HHH
Confidence 568999999999998 554
No 188
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=42.59 E-value=14 Score=26.43 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCeEEEEecCchhHH-----HHHHHHHHhhhhhhcccCCce-EEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSM-----ALLHLLQEGMQLSSHKRILFS-VCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~-----~Ll~ll~~~l~~~~~~~~~~~-~~~v~vd~~ 49 (70)
+..|++.+|-|.--. .+..+++. + .++.+.+ ++++|.||+
T Consensus 42 ~sPvIlq~s~~~~~~~~~~~~~~~~~~~-~----a~~~~~~vPV~lHLDH~ 87 (293)
T PRK07315 42 KAPVLIQTSMGAAKYMGGYKVCKNLIEN-L----VESMGITVPVAIHLDHG 87 (293)
T ss_pred CCCEEEEcCccHHhhcCcHHHHHHHHHH-H----HHHcCCCCcEEEECCCC
Confidence 456777776653221 12333333 2 2334433 689999999
No 189
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=42.36 E-value=23 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=17.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 2 MRPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
++.+.|++++|| |-++|...+.+
T Consensus 91 i~~~PK~fiGyS---DiTaL~~al~~ 113 (308)
T cd07062 91 IKKNPKIFIGYS---DITALHLAIYK 113 (308)
T ss_pred HhhCCCEEEecc---HHHHHHHHHHH
Confidence 345678888888 88888776664
No 190
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=42.23 E-value=7.8 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.8
Q ss_pred cCchhHHHHHHHHHHhhhh
Q psy3866 13 SGSHSSMALLHLLQEGMQL 31 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~ 31 (70)
+-|.||+.++.+... +++
T Consensus 26 ~lG~DSl~~~~l~~~-l~~ 43 (67)
T PF00550_consen 26 DLGLDSLDAIELVSE-LEE 43 (67)
T ss_dssp TTTSSHHHHHHHHHH-HHH
T ss_pred HhCCchHHHHHHHHH-HHH
Confidence 567899999999998 654
No 191
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.17 E-value=20 Score=20.32 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHhhhhhhcccCCce
Q psy3866 14 GSHSSMALLHLLQEGMQLSSHKRILFS 40 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~~~~~~~~~~ 40 (70)
+|.||+-++.++.. +.+ .++++
T Consensus 35 lg~DSld~veLi~~-lE~----~f~i~ 56 (80)
T COG0236 35 LGLDSLDLVELVMA-LEE----EFGIE 56 (80)
T ss_pred cCccHHHHHHHHHH-HHH----HHCCc
Confidence 79999999999998 553 55554
No 192
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=42.14 E-value=67 Score=18.34 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=23.0
Q ss_pred CeEEEEecCchhHHHH-HHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 6 DKVLVAFSGSHSSMAL-LHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 6 ~kvlva~SGG~DS~~L-l~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
.+|++.+..|.-|..| ..-+++.++ +.+....+-+.+.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~-----~~~~~~~v~~~~~ 39 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLK-----KAGLEIPVTNSAI 39 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHH-----HCCCceEEEEcch
Confidence 4799999999877666 444555333 3455444444443
No 193
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=41.97 E-value=47 Score=19.36 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
.+.++|++-+.+|..|..+...++.
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~ 100 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALEL 100 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHH
Confidence 3567788888888887777666654
No 194
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=41.05 E-value=42 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=27.5
Q ss_pred EEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 10 VAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 10 va~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
+=.--|+||++.+..|++ .|+++.+.+.|+++ .+
T Consensus 3 LH~CCaPCs~~~~~~L~~---------~g~~vt~~fyNPNI-hP 36 (176)
T PF02677_consen 3 LHICCAPCSTYPLERLRE---------EGFDVTGYFYNPNI-HP 36 (176)
T ss_pred eeecCccccHHHHHHHHH---------CCCCeEEEEeCCCC-Cc
Confidence 334468999999888886 48999999999996 44
No 195
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.43 E-value=77 Score=22.08 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCCc
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ 53 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~~ 53 (70)
...++||=.--++||+..+.-|++ .|+++.+.+.|.++ .+
T Consensus 2 ~~~kiLlH~CCAPcs~y~le~l~~---------~~~~i~~yFYNPNI-hP 41 (204)
T COG1636 2 GRPKLLLHSCCAPCSGYVLEKLRD---------SGIKITIYFYNPNI-HP 41 (204)
T ss_pred CCCeeEEEeecCCCcHHHHHHHHh---------cCcceEEEEeCCCC-Cc
Confidence 357899988899999999888886 48999999999996 54
No 196
>CHL00124 acpP acyl carrier protein; Validated
Probab=40.03 E-value=21 Score=20.06 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHHhhhhhhcccCCce
Q psy3866 14 GSHSSMALLHLLQEGMQLSSHKRILFS 40 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~~~~~~~~~~ 40 (70)
.|.||+.++.++.+ +.+ ++|.+
T Consensus 35 lg~DSl~~~eli~~-le~----~f~i~ 56 (82)
T CHL00124 35 LGADSLDVVELVMA-IEE----KFDIE 56 (82)
T ss_pred cCCcHHHHHHHHHH-HHH----HHCCc
Confidence 68999999999998 543 45544
No 197
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=39.53 E-value=91 Score=21.60 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEE
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 45 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~ 45 (70)
+..+++| |=+|.++..|..++.. +||++.++-
T Consensus 99 p~~~L~I-fGaG~va~~la~la~~---------lGf~V~v~D 130 (246)
T TIGR02964 99 PAPHVVL-FGAGHVGRALVRALAP---------LPCRVTWVD 130 (246)
T ss_pred CCCEEEE-ECCcHHHHHHHHHHhc---------CCCEEEEEe
Confidence 3445554 8899999999988885 688877653
No 198
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.10 E-value=19 Score=26.22 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=22.4
Q ss_pred CCeEEEEecCchhHH----HHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSM----ALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~----~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-.. .+..+++. + .++...-++++|.||+.
T Consensus 41 ~sPvIlq~s~~~~~~~g~~~~~~~~~~-~----a~~~~~VPValHLDHg~ 85 (307)
T PRK05835 41 NSPLFIQASEGAIKYMGIDMAVGMVKI-M----CERYPHIPVALHLDHGT 85 (307)
T ss_pred CCCEEEEcCccHHhhCChHHHHHHHHH-H----HHhcCCCeEEEECCCCC
Confidence 345677776653221 22233333 2 23343247899999996
No 199
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=38.78 E-value=61 Score=25.88 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~ 50 (70)
.+.++.+|+|||..=.-+...|.+..+ ...+.| ++.+..+|+-+
T Consensus 57 ~~~~~~laLsGGsTP~~~Y~~L~~~~~---~~~l~w~~V~~F~~DEr~ 101 (652)
T PRK02122 57 EGKPCVLGLATGSSPIGVYAELIRMHR---EEGLSFKNVITFNLDEYY 101 (652)
T ss_pred hCCCEEEEEcCCcCHHHHHHHHHhhhh---ccCCCchheEEEeCeecc
Confidence 467899999999888878777776111 123455 57888888876
No 200
>PLN02828 formyltetrahydrofolate deformylase
Probab=38.30 E-value=99 Score=22.05 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=28.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+..||+|-+||. ...|-+++.. .+ .+.++.++.+|.-|+.
T Consensus 69 ~~~riavlvSg~--g~nl~~ll~~-~~---~g~l~~eI~~ViSn~~ 108 (268)
T PLN02828 69 PKYKIAVLASKQ--DHCLIDLLHR-WQ---DGRLPVDITCVISNHE 108 (268)
T ss_pred CCcEEEEEEcCC--ChhHHHHHHh-hh---cCCCCceEEEEEeCCC
Confidence 456999999998 4456667766 33 2567788888888873
No 201
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=38.19 E-value=76 Score=17.86 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.5
Q ss_pred eEEEEecCchhHHH-HHHHHHH
Q psy3866 7 KVLVAFSGSHSSMA-LLHLLQE 27 (70)
Q Consensus 7 kvlva~SGG~DS~~-Ll~ll~~ 27 (70)
||++.++.|..|+. +..-+++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~ 23 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKE 23 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 79999999998874 4444444
No 202
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=37.58 E-value=93 Score=18.70 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred CeEEEEecCchhHHHHHHHH-HHhhhhhhcccCCc--eEEEEEEeC
Q psy3866 6 DKVLVAFSGSHSSMALLHLL-QEGMQLSSHKRILF--SVCAIYIDD 48 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll-~~~l~~~~~~~~~~--~~~~v~vd~ 48 (70)
.||++|+-.|.-|+.++..- .+.++ ++|+ ++...++|.
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~-----~~gi~~~~~~~~v~~ 42 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLK-----ELGIDVDVEQCAVDE 42 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHH-----HcCCCceeeeEEecc
Confidence 48999999998777776554 44343 3455 566666664
No 203
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.48 E-value=84 Score=18.16 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
....+++-+..|.-|......|++ .|++ .+.+++.|+
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~---------~G~~-~v~~l~GG~ 93 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQ---------QGFD-VVYSIDGGF 93 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHH---------CCch-heEEecCCH
Confidence 345566666656556555555553 4665 345778776
No 204
>PRK07639 acyl carrier protein; Provisional
Probab=37.47 E-value=28 Score=20.35 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 14 GSHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
.|.||+-++.++.. +.+ ++|+++
T Consensus 36 L~lDSld~velv~~-lE~----~fgi~i 58 (86)
T PRK07639 36 LYIDSVMMLQLIVY-IEM----DVKLCV 58 (86)
T ss_pred cCCChHHHHHHHHH-HHH----HHCCcc
Confidence 68999999999997 553 566654
No 205
>PRK07334 threonine dehydratase; Provisional
Probab=37.41 E-value=98 Score=22.72 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=26.3
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 4 PQDKVLVAFSGS-HSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
++++|++-++|| .|.-.+-.++.+.|.+ ..+..++.+...|
T Consensus 294 ~~~~vv~i~~ggn~d~~~l~~il~~~l~~---~~y~v~l~I~~~d 335 (403)
T PRK07334 294 RGRKVGLVLSGGNIDTRLLANVLLRGLVR---AGRLARLRVDIRD 335 (403)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCEEEEEEEeCC
Confidence 467899999999 5777676767665553 2233455555555
No 206
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=37.33 E-value=81 Score=21.50 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..+.||+++--||.-.=+. |+..+.+-+...++.+++-.+++.|...
T Consensus 39 ~~G~Kvl~cGNGgSaadAq-Hfaael~gRf~~eR~~lpaIaLt~dsS~ 85 (176)
T COG0279 39 LNGNKVLACGNGGSAADAQ-HFAAELTGRFEKERPSLPAIALSTDSSV 85 (176)
T ss_pred HcCCEEEEECCCcchhhHH-HHHHHHhhHHHhcCCCCCeeEeecccHH
Confidence 5689999999999544333 4555533322246678899999999654
No 207
>PRK07081 acyl carrier protein; Provisional
Probab=36.07 E-value=28 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 15 SHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 15 G~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
|.||+.++.++.. +. +++++++
T Consensus 32 GlDSl~~v~li~~-lE----~~f~I~i 53 (83)
T PRK07081 32 GLSSLATVQLMLA-IE----DAFDIEI 53 (83)
T ss_pred CCCHHHHHHHHHH-HH----HHhCCcC
Confidence 6999999999997 55 3566554
No 208
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=35.28 E-value=91 Score=19.69 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 9 LVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 9 lva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
|+-|-+|.++..+..+... +||++.++-=+..
T Consensus 1 L~I~GaG~va~al~~la~~---------lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL---------LGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHH---------CTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHh---------CCCEEEEEcCCcc
Confidence 4557789999999998886 6888777655543
No 209
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=35.13 E-value=43 Score=23.50 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
+.+.|++++|| |-++|+..+.+
T Consensus 88 ~~~pK~~iGyS---DiTaL~~~l~~ 109 (282)
T cd07025 88 RANPKIFVGYS---DITALHLALYA 109 (282)
T ss_pred hhCCeEEEEec---HHHHHHHHHHH
Confidence 45789999998 99988877765
No 210
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.95 E-value=18 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCeEEEEecCchhHH----HHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSM----ALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~----~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-.. .+..++.. + .++... ++++|.||+.
T Consensus 42 ~sPvIiq~~~~~~~~~g~~~~~~~~~~-~----A~~~~V-PV~lHLDHg~ 85 (284)
T PRK09195 42 HSPVIIAGTPGTFSYAGTEYLLAIVSA-A----AKQYHH-PLALHLDHHE 85 (284)
T ss_pred CCCEEEEcChhHHhhCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 345667666543221 23344444 2 234444 5899999995
No 211
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=34.77 E-value=23 Score=25.41 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=21.5
Q ss_pred CCeEEEEecCchhHH----HHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSM----ALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~----~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-.. .+..++.. + .++.+. ++++|.||+-
T Consensus 40 ~sPvIlq~s~~~~~~~~~~~~~~~~~~-~----a~~~~V-PValHLDHg~ 83 (282)
T TIGR01858 40 RSPVILAGTPGTFKHAGTEYIVALCSA-A----STTYNM-PLALHLDHHE 83 (282)
T ss_pred CCCEEEEeCccHHhhCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 345677766543211 12333333 2 234444 6899999995
No 212
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.62 E-value=75 Score=24.76 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=24.5
Q ss_pred EecCchhHHHHHHHHHHhhhhhh---cccCCceEEEEEEeCCCCCcCcccccCccc
Q psy3866 11 AFSGSHSSMALLHLLQEGMQLSS---HKRILFSVCAIYIDDGSISQVSKSKLNPNF 63 (70)
Q Consensus 11 a~SGG~DS~~Ll~ll~~~l~~~~---~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~ 63 (70)
++|||.+-+ .+++.+.+.+.+ .=..|. -++|||+..+--+|..+-|.-+|
T Consensus 419 alsgG~~e~--adW~~krygqsFdAVyVppG~-~vavHi~q~i~IDye~~GRkV~y 471 (472)
T TIGR03752 419 ALSGGVDEV--ADWVNKRYGQSFDAVYVPPGA-QVAVHIDQELAIDYEPKGRKVDY 471 (472)
T ss_pred hhccchHHH--HHHHHHHhhccccEEEeCCCC-EEEEEecccccCCCCcCCccccC
Confidence 356776653 345555333211 011112 36788888775556555454443
No 213
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.52 E-value=21 Score=25.57 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCeEEEEecCchhH----HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSS----MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS----~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-. -.+..+++. + .++... ++++|.||+.
T Consensus 42 ~sPvIlq~~~~~~~~~g~~~~~~~~~~-~----A~~~~V-PValHLDH~~ 85 (284)
T PRK12857 42 KSPVIIQASQGAIKYAGIEYISAMVRT-A----AEKASV-PVALHLDHGT 85 (284)
T ss_pred CCCEEEEechhHhhhCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 45677777754322 123333443 2 233444 6899999995
No 214
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=34.39 E-value=41 Score=23.59 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.7
Q ss_pred CCCCeEEEEecCchhHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMA 20 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~ 20 (70)
.++|.+++-+|||-+++.
T Consensus 114 ~~~dlvl~LiSGGgSALl 131 (238)
T PF13660_consen 114 TEDDLVLVLISGGGSALL 131 (238)
T ss_dssp -TTSEEEEEE-TTHHHHS
T ss_pred CCCCeEEEEecCChHHhh
Confidence 578999999999987764
No 215
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.27 E-value=26 Score=25.14 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=21.4
Q ss_pred CCeEEEEecCchhH----HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSS----MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS----~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-. -.+..++.. + .++.+. ++++|.||+.
T Consensus 42 ~sPvIiq~~~~~~~~~g~~~~~~~~~~-~----a~~~~V-PValHLDH~~ 85 (284)
T PRK12737 42 RSPVILAGTPGTFSYAGTDYIVAIAEV-A----ARKYNI-PLALHLDHHE 85 (284)
T ss_pred CCCEEEEcCccHHhhCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 34566666643221 123333443 2 234444 6899999996
No 216
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=33.19 E-value=84 Score=16.87 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.++|++-..+|..+..+...|++ .|++- +..++-|+
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~---------~G~~~-v~~l~GG~ 91 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRE---------LGFKN-VYLLDGGY 91 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHH---------cCCCc-eEEecCCH
Confidence 4567888888888888777666664 35542 44556665
No 217
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=33.06 E-value=1.2e+02 Score=21.08 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCc-eEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~-~~~~v~vd~~~~ 51 (70)
..++.||+|||.-=..+...|.+ .. +.+..+ ++.+..+|+-+.
T Consensus 31 ~~~~~l~LsgGsTP~~~ye~L~~-~~---~~~~~w~~v~~f~~DEr~v 74 (238)
T COG0363 31 RGRAVLALSGGSTPLALYEALVK-LP---QGQLDWSKVTIFNLDERVV 74 (238)
T ss_pred cCcEEEEECCCCCHHHHHHHHHh-hh---ccCCCchheEEEecccccc
Confidence 34799999999887777777765 11 123555 578888998874
No 218
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=33.02 E-value=1.5e+02 Score=20.01 Aligned_cols=38 Identities=8% Similarity=0.125 Sum_probs=31.5
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
++|.|+.-.-.++.++.+++.+.|++ .|+.+..+..+.
T Consensus 1 k~I~ig~~~w~~~~~~a~i~~~~Le~-----~G~~v~~~~~~~ 38 (257)
T PF04069_consen 1 KPIVIGSKNWTESQILAEIYAQLLEA-----AGYVVEVVNLGS 38 (257)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHH-----TTEEEEEEEESS
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHH-----CCCeEEEecCCc
Confidence 47889999999999999999996653 388888888776
No 219
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=32.87 E-value=41 Score=17.91 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=14.6
Q ss_pred eEEEEecCch-hHHHHHHHHHHhh
Q psy3866 7 KVLVAFSGSH-SSMALLHLLQEGM 29 (70)
Q Consensus 7 kvlva~SGG~-DS~~Ll~ll~~~l 29 (70)
+|++.+++|. -|..+..-+++.+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~ 24 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAA 24 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHH
Confidence 5788888885 4444555555533
No 220
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.15 E-value=82 Score=21.46 Aligned_cols=39 Identities=31% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
.++| ++|++|-.-.+--+...++. . ++.|.++.+++=+.
T Consensus 174 ~~~D-v~I~iS~sg~~~~~~~~~~~-a-----k~~ga~iI~IT~~~ 212 (278)
T PRK11557 174 SPDD-LLLAISYSGERRELNLAADE-A-----LRVGAKVLAITGFT 212 (278)
T ss_pred CCCC-EEEEEcCCCCCHHHHHHHHH-H-----HHcCCCEEEEcCCC
Confidence 3445 77788876555555555554 2 24678888887653
No 221
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=32.06 E-value=34 Score=18.96 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=17.9
Q ss_pred cCchhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 13 SGSHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
..|.||+.++.++.+ +.+ ++|.++
T Consensus 32 dlglDSl~~veli~~-lE~----~f~i~i 55 (77)
T TIGR00517 32 DLGADSLDTVELVMA-LEE----EFDIEI 55 (77)
T ss_pred hcCCcHHHHHHHHHH-HHH----HHCCCC
Confidence 378999999999998 553 555543
No 222
>PRK05439 pantothenate kinase; Provisional
Probab=31.81 E-value=1.4e+02 Score=21.66 Aligned_cols=44 Identities=16% Similarity=0.028 Sum_probs=28.1
Q ss_pred CCCeEEEEecCchh--HHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHS--SMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~D--S~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+.+++|+++|++- -+.++..|.+.+.+ ...+.++.++++|.-+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~---~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR---WPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh---hCCCCceEEEeccccc
Confidence 35678999999743 24455666663431 1135678899999665
No 223
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=31.37 E-value=1e+02 Score=17.39 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=17.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
+.+.|++-+.+|..|......+..
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~ 88 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARS 88 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHH
Confidence 456888888888877666666654
No 224
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=30.76 E-value=27 Score=25.99 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=22.0
Q ss_pred CCeEEEEecCchhH----HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSS----MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS----~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-. -.+..+++. + .++...-++++|.||+.
T Consensus 40 ~sPvIlq~s~~~~~~~g~~~~~~~~~~-~----ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 40 DSPVILQASRGARSYAGAPFLRHLILA-A----IEEYPHIPVVMHQDHGN 84 (347)
T ss_pred CCCEEEECCcchhhhCCHHHHHHHHHH-H----HHhCCCCcEEEECCCCC
Confidence 45567777665322 123333333 2 22332237899999995
No 225
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=30.71 E-value=1.2e+02 Score=19.31 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceE-EEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSV-CAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~-~~v~vd~~ 49 (70)
.+.-+++++|.| +++...+.++ |.+ .|.++ .++-+|..
T Consensus 65 ~gp~~L~G~S~G--g~lA~E~A~~-Le~-----~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 65 EGPYVLAGWSFG--GILAFEMARQ-LEE-----AGEEVSRLILIDSP 103 (229)
T ss_dssp SSSEEEEEETHH--HHHHHHHHHH-HHH-----TT-SESEEEEESCS
T ss_pred CCCeeehccCcc--HHHHHHHHHH-HHH-----hhhccCceEEecCC
Confidence 346799999998 7888888887 653 37777 57778854
No 226
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=30.24 E-value=29 Score=25.77 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=9.0
Q ss_pred EEEEEEeCCC
Q psy3866 41 VCAIYIDDGS 50 (70)
Q Consensus 41 ~~~v~vd~~~ 50 (70)
++++|.||+.
T Consensus 77 PVaLHLDHg~ 86 (347)
T PRK13399 77 PICLHQDHGN 86 (347)
T ss_pred cEEEECCCCC
Confidence 6899999995
No 227
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.22 E-value=1e+02 Score=17.87 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=25.4
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+.+++.+|-.-.+.-++.++.. .+ +.|.++.+++-+..
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~-a~-----~~g~~iv~iT~~~~ 98 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEI-AK-----ERGAKVIAITDSAN 98 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHH-HH-----HcCCeEEEEcCCCC
Confidence 4577778876666667777765 33 34778877777654
No 228
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.50 E-value=2.2e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.1
Q ss_pred ecCchhHHHHHHHHHHhhhhhhcccCCceEEEE--EEeCCC
Q psy3866 12 FSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI--YIDDGS 50 (70)
Q Consensus 12 ~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v--~vd~~~ 50 (70)
+-||-||+..+..|.+++++ ...+.+++.| |||..+
T Consensus 179 vIGGddS~~~A~~Lae~~~~---~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 179 IIGGVTSNTDAAQLAETFAE---AKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred EeCCchHHHHHHHHHHHHHH---cCCCceEEEeceeeeCCC
Confidence 56999999999999885543 3345666554 888776
No 229
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=29.37 E-value=1.3e+02 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAF-SGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~-SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..+|+|-+ .||.-|..+..+|.+ .|++ +..++-|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~---------~G~~--v~~L~GG~ 123 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKE---------AGID--VPRLEGGY 123 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHH---------cCCC--cEEEcCCH
Confidence 456777776 699999888877775 4675 45677665
No 230
>PTZ00301 uridine kinase; Provisional
Probab=29.08 E-value=1.4e+02 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.8
Q ss_pred eEEEEecCchhH--HHHHHHHH
Q psy3866 7 KVLVAFSGSHSS--MALLHLLQ 26 (70)
Q Consensus 7 kvlva~SGG~DS--~~Ll~ll~ 26 (70)
..+|+++||+-| +.++..+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHH
Confidence 478999997554 44444443
No 231
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=28.68 E-value=52 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.7
Q ss_pred CCeEEEEecCc-hhHHHHHHHHH
Q psy3866 5 QDKVLVAFSGS-HSSMALLHLLQ 26 (70)
Q Consensus 5 ~~kvlva~SGG-~DS~~Ll~ll~ 26 (70)
..|...++|+| .|||+.=+-..
T Consensus 68 ~PrLff~VsaGn~DSMV~hYTa~ 90 (302)
T PF08497_consen 68 RPRLFFGVSAGNMDSMVNHYTAS 90 (302)
T ss_pred CCcEEEEEccccHHHHHHhhccc
Confidence 35788899999 89998755444
No 232
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=28.51 E-value=1.8e+02 Score=23.86 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=31.9
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.+|++-|-||+|---.|....+ +. ++.+..+.++++...
T Consensus 631 ~~v~~~F~GG~DDREALa~a~r-ma----~~p~v~lTVirf~~~ 669 (832)
T PLN03159 631 HHVAVLFFGGPDDREALAYAWR-MS----EHPGITLTVMRFIPG 669 (832)
T ss_pred eeEEEEecCCcchHHHHHHHHH-Hh----cCCCeEEEEEEEEcc
Confidence 4899999999999988888777 54 467889999888643
No 233
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.49 E-value=1.3e+02 Score=18.00 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=24.3
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+-+++++|..-.+.-++..++. .+ +.|.++.+++=+.+
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~-a~-----~~g~~vi~iT~~~~ 85 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKF-AK-----EKGATVIGLTDDED 85 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHH-HH-----HcCCeEEEEECCCC
Confidence 3467777766666666677765 33 35777777775533
No 234
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=28.48 E-value=61 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 20 ALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 20 ~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
.+..+++. +. ++.+. ++++|.||+.
T Consensus 74 ~~~~~v~~-~A----~~~~V-PValHLDHg~ 98 (345)
T cd00946 74 AAAHHVRS-MA----EHYGV-PVVLHTDHCA 98 (345)
T ss_pred HHHHHHHH-HH----HHCCC-CEEEECCCCC
Confidence 34455554 32 34555 4899999996
No 235
>PRK12449 acyl carrier protein; Provisional
Probab=27.78 E-value=45 Score=18.57 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHHhhhh
Q psy3866 14 GSHSSMALLHLLQEGMQL 31 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~ 31 (70)
-|.||+.++.++.+ +.+
T Consensus 35 lg~DSl~~~~li~~-lE~ 51 (80)
T PRK12449 35 LAVDSIELVEFIIN-VED 51 (80)
T ss_pred cCCcHHHHHHHHHH-HHH
Confidence 48899999999998 543
No 236
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=35 Score=25.56 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCchhHH
Q psy3866 2 MRPQDKVLVAFSGSHSSM 19 (70)
Q Consensus 2 i~~~~kvlva~SGG~DS~ 19 (70)
|++.+.|+|+++|+.|.+
T Consensus 203 i~ey~pvlIgVdGaAD~l 220 (395)
T COG4825 203 IKEYQPVLIGVDGAADVL 220 (395)
T ss_pred HHhhCCEEEEccchHHHH
Confidence 456789999999998863
No 237
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=27.36 E-value=1.5e+02 Score=19.99 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=26.0
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~ 49 (70)
+..++|+|||..=..++..|.+...+ .+.. -++.++.+|+-
T Consensus 33 ~~~~iglsgG~T~~~~~~~L~~~~~~---~~~~~~~v~v~~~DEr 74 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKALIELHKA---GKVDFSRVTTFNLDEY 74 (261)
T ss_pred CceEEEecCCCCHHHHHHHHHHHhhh---cCCchHHeEEEeCcee
Confidence 45678999998766676666631111 1233 36888888853
No 238
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=27.30 E-value=70 Score=23.73 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=19.0
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGS-HSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll~ll~~ 27 (70)
++.+|++-+||| .|...+..++++
T Consensus 371 ~~~~vv~i~tggn~d~~~~~~~~~~ 395 (396)
T TIGR03528 371 KNSRVLLISTEGDTDPDNYRKIVWQ 395 (396)
T ss_pred CCCEEEEEECCCCCCHHHHHHHhcC
Confidence 468999999999 787777766654
No 239
>PRK09184 acyl carrier protein; Provisional
Probab=27.13 E-value=47 Score=19.67 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 14 GSHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
=|.||+-++.++.. +. +++|+++
T Consensus 40 LglDSld~velv~~-lE----~~fgi~i 62 (89)
T PRK09184 40 LGLDSIDILEIALV-IS----KRYGFQL 62 (89)
T ss_pred CCCcHHHHHHHHHH-HH----HHHCCcC
Confidence 58999999999987 54 4677664
No 240
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=27.01 E-value=1.3e+02 Score=17.07 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..+|++-+.+|.-|...+..+.+ .|++ .+..++-|+
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~---------~G~~-~v~~l~GG~ 93 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLR---------QGFE-NVYNLQGGI 93 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHH---------cCCc-cEEEecCCH
Confidence 56788888778777666666654 4664 344666664
No 241
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.80 E-value=1.3e+02 Score=18.91 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=24.2
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
+-+++++|..-.+--++..++. .+ +.|.++.+++=+.
T Consensus 80 ~D~~i~iS~sG~t~~~~~~~~~-a~-----~~g~~ii~iT~~~ 116 (154)
T TIGR00441 80 GDVLLGISTSGNSKNVLKAIEA-AK-----DKGMKTITLAGKD 116 (154)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH-HH-----HCCCEEEEEeCCC
Confidence 3477777766556666666665 32 4578888888653
No 242
>PRK05320 rhodanese superfamily protein; Provisional
Probab=26.72 E-value=99 Score=21.61 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..+|++-+.||..|..+...|++ .||+ .+.++.-|+
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~---------~Gf~-~V~~L~GGi 210 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQE---------VGID-NVYQLEGGI 210 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHH---------cCCc-ceEEeccCH
Confidence 356799999999999988887775 4664 234666665
No 243
>PRK05883 acyl carrier protein; Validated
Probab=26.71 E-value=47 Score=19.62 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHhhhh
Q psy3866 14 GSHSSMALLHLLQEGMQL 31 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~ 31 (70)
-|.||+.++.++.. +.+
T Consensus 44 lg~DSL~~v~lv~~-lE~ 60 (91)
T PRK05883 44 VGLDSVAFAVGMVA-IEE 60 (91)
T ss_pred cCCChHHHHHHHHH-HHH
Confidence 47899999999886 553
No 244
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.55 E-value=1.3e+02 Score=19.82 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-+++++|..-.|--++.++.. .+ +.|.++.+++=..
T Consensus 113 Dv~i~iS~sG~t~~~~~~~~~-ak-----~~g~~iI~IT~~~ 148 (197)
T PRK13936 113 DVLLAISTSGNSANVIQAIQA-AH-----EREMHVVALTGRD 148 (197)
T ss_pred CEEEEEeCCCCcHHHHHHHHH-HH-----HCCCeEEEEECCC
Confidence 366667766555556666654 32 4678888887643
No 245
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.47 E-value=38 Score=24.38 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=11.0
Q ss_pred cCCc-eEEEEEEeCCC
Q psy3866 36 RILF-SVCAIYIDDGS 50 (70)
Q Consensus 36 ~~~~-~~~~v~vd~~~ 50 (70)
+... -++++|.||+.
T Consensus 73 ~~~~~vPV~lHLDHg~ 88 (286)
T PRK08610 73 DLNITIPVAIHLDHGS 88 (286)
T ss_pred HcCCCCCEEEECCCCC
Confidence 3443 36999999995
No 246
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=26.42 E-value=1.5e+02 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+.++|++-+.||.-|.....+|.+ .|++ .+.+++-|+
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~---------~Gf~-~V~~L~GGi 206 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKH---------EGFK-EVYQLEGGI 206 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHH---------cCCC-cEEEecchH
Confidence 457899999999999888777764 4664 456677775
No 247
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=26.39 E-value=1.9e+02 Score=20.87 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=20.2
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHHHhhh
Q psy3866 4 PQDKVLVAFSGS-HSSMALLHLLQEGMQ 30 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll~ll~~~l~ 30 (70)
++.+|++-+||| .|...+-.++..++.
T Consensus 273 ~~~~vv~i~sGGn~d~d~l~~vi~~gl~ 300 (380)
T TIGR01127 273 KGKKIAVVLSGGNIDLNLLNKIIEKGLV 300 (380)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467899999999 577777677766554
No 248
>PRK06801 hypothetical protein; Provisional
Probab=26.16 E-value=32 Score=24.63 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCeEEEEecCchhH----HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSS----MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS----~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-- -.+..++.. + .++... ++++|.||+.
T Consensus 42 ~~PvIl~~~~~~~~~~~~~~~~~~~~~-~----a~~~~v-pV~lHlDH~~ 85 (286)
T PRK06801 42 RSPFIINIAEVHFKYISLESLVEAVKF-E----AARHDI-PVVLNLDHGL 85 (286)
T ss_pred CCCEEEEeCcchhhcCCHHHHHHHHHH-H----HHHCCC-CEEEECCCCC
Confidence 34566666655321 223334443 2 234444 5899999995
No 249
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=26.14 E-value=1.3e+02 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhhhccc--CCceEEEEEEeC
Q psy3866 18 SMALLHLLQEGMQLSSHKR--ILFSVCAIYIDD 48 (70)
Q Consensus 18 S~~Ll~ll~~~l~~~~~~~--~~~~~~~v~vd~ 48 (70)
|+.|||+|.+ |-+++-+. ..-+-.++++|+
T Consensus 232 sTFLLwLLsE-Lfe~LPEvGD~dkPklVfFfDE 263 (502)
T PF05872_consen 232 STFLLWLLSE-LFEQLPEVGDLDKPKLVFFFDE 263 (502)
T ss_pred HHHHHHHHHH-HHHhCccCCCCCCceEEEEEec
Confidence 8999999999 66655332 223445677884
No 250
>COG1158 Rho Transcription termination factor [Transcription]
Probab=25.71 E-value=40 Score=25.72 Aligned_cols=16 Identities=44% Similarity=0.488 Sum_probs=12.0
Q ss_pred CCCCeEEEEecCchhHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMAL 21 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~L 21 (70)
++..|+| |||+|+.+|
T Consensus 281 P~SGkvL---sGGvD~nAL 296 (422)
T COG1158 281 PSSGKVL---SGGVDANAL 296 (422)
T ss_pred CCCCCee---cCCcChhhh
Confidence 3445665 999999887
No 251
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=25.51 E-value=36 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
+...|++++|| |-++|+..+.+
T Consensus 88 ~~~pK~~iGyS---DiTaL~~al~~ 109 (284)
T PF02016_consen 88 RKNPKIFIGYS---DITALHNALYA 109 (284)
T ss_dssp HHSG-EEEE-G---GGHHHHHHHHH
T ss_pred ccCCCEEEEec---chHHHHHHHHH
Confidence 45678999998 99998877776
No 252
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.21 E-value=30 Score=24.84 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=10.7
Q ss_pred cCCceEEEEEEeCCC
Q psy3866 36 RILFSVCAIYIDDGS 50 (70)
Q Consensus 36 ~~~~~~~~v~vd~~~ 50 (70)
+.+. ++++|.||+.
T Consensus 72 ~~~v-PV~lHLDH~~ 85 (283)
T PRK07998 72 KMDV-PVSLHLDHGK 85 (283)
T ss_pred HCCC-CEEEECcCCC
Confidence 4455 6899999995
No 253
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.15 E-value=1.5e+02 Score=18.80 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=24.2
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+-+++++|-+-.+.-++.+++. .+ +.|.++.+++=.++
T Consensus 76 ~D~vI~iS~sG~t~~~i~~~~~-ak-----~~g~~iI~IT~~~~ 113 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEK-AK-----KAGAKVVLITSNPD 113 (179)
T ss_pred CCEEEEEcCCCCcHHHHHHHHH-HH-----HCCCeEEEEECCCC
Confidence 3467777766556656666665 33 35788888876543
No 254
>KOG1325|consensus
Probab=25.00 E-value=54 Score=26.10 Aligned_cols=19 Identities=26% Similarity=0.003 Sum_probs=14.1
Q ss_pred CCCeEEEEecCc-hhHHHHH
Q psy3866 4 PQDKVLVAFSGS-HSSMALL 22 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll 22 (70)
.+.+|.||+||| --+|+..
T Consensus 46 d~P~vaIa~SGGG~RAMl~g 65 (571)
T KOG1325|consen 46 DGPVVGIAGSGGGLRAMLSG 65 (571)
T ss_pred CCCeEEEEecCCCHHHHhhh
Confidence 478999999988 5555543
No 255
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=24.90 E-value=1.8e+02 Score=17.95 Aligned_cols=43 Identities=28% Similarity=0.223 Sum_probs=29.7
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 52 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~~ 52 (70)
|+|=.||..+--.|-.++.+ +.. +.++.+.++.++..|.....
T Consensus 3 vaiDtSGSis~~~l~~fl~e-v~~-i~~~~~~~v~vi~~D~~v~~ 45 (126)
T PF09967_consen 3 VAIDTSGSISDEELRRFLSE-VAG-ILRRFPAEVHVIQFDAEVQD 45 (126)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHH-HHHhCCCCEEEEEECCEeee
Confidence 45556999877666666666 332 34455788999999988743
No 256
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=24.76 E-value=2.1e+02 Score=19.87 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=21.7
Q ss_pred eEEEEecCc---hhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 7 KVLVAFSGS---HSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 7 kvlva~SGG---~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
-|++|..|- ..+++.+.+|++ .-...++.+|.|-
T Consensus 36 DVVlA~aGd~pT~E~lAA~~lLr~-------~~P~lkiRvVNVv 72 (203)
T PF09363_consen 36 DVVLACAGDVPTLEVLAAASLLRE-------HFPELKIRVVNVV 72 (203)
T ss_dssp SEEEEEESHHHHHHHHHHHHHHHH-------T--T--EEEEEES
T ss_pred CEEEEecCchhhHHHHHHHHHHHH-------hccCceEEEEEEe
Confidence 478888887 456777777776 2246788888875
No 257
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.56 E-value=1.2e+02 Score=16.03 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=19.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHH
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
.+.++|++-...|..+......|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~ 72 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRK 72 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHH
Confidence 4567888888788888877777775
No 258
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.53 E-value=1.6e+02 Score=17.23 Aligned_cols=36 Identities=19% Similarity=0.046 Sum_probs=19.4
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-+++++|-.-.+--++..++. .+ +.|.++.+++=+.
T Consensus 48 d~~I~iS~sG~t~e~~~~~~~-a~-----~~g~~vi~iT~~~ 83 (126)
T cd05008 48 TLVIAISQSGETADTLAALRL-AK-----EKGAKTVAITNVV 83 (126)
T ss_pred cEEEEEeCCcCCHHHHHHHHH-HH-----HcCCeEEEEECCC
Confidence 345555543333335555554 22 3577888877654
No 259
>KOG1907|consensus
Probab=24.50 E-value=32 Score=29.42 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.5
Q ss_pred EEEEecCchhHHHHH
Q psy3866 8 VLVAFSGSHSSMALL 22 (70)
Q Consensus 8 vlva~SGG~DS~~Ll 22 (70)
+-+|+-|||||+.|.
T Consensus 785 LgiAIdgGKDSlSMa 799 (1320)
T KOG1907|consen 785 LGIAIDGGKDSLSMA 799 (1320)
T ss_pred hceeecCCccchhhh
Confidence 347889999999886
No 260
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=24.20 E-value=1.4e+02 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=21.2
Q ss_pred CCeEEEEecCc-hhHHHHHHHHHHhhh
Q psy3866 5 QDKVLVAFSGS-HSSMALLHLLQEGMQ 30 (70)
Q Consensus 5 ~~kvlva~SGG-~DS~~Ll~ll~~~l~ 30 (70)
.+++++++||. -|...+...++.-++
T Consensus 39 ~d~i~~~~aG~~aD~q~l~~~~~~~~~ 65 (171)
T TIGR03692 39 NGKVLAGFAGSTADAFTLFERFEAKLE 65 (171)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHHHH
Confidence 37899999998 699999888876444
No 261
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=24.00 E-value=2.2e+02 Score=20.50 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=23.0
Q ss_pred eEEEEe-cCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 7 KVLVAF-SGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 7 kvlva~-SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+|++-+ .||.-|..+..+|.+ .|++ +..++-|+
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~---------~G~~--v~~L~GG~ 109 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQ---------IGFR--VPRLEGGY 109 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHH---------cCCC--EEEecChH
Confidence 466666 699999888887775 5775 44566564
No 262
>PRK05828 acyl carrier protein; Validated
Probab=23.93 E-value=59 Score=19.04 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=17.1
Q ss_pred cCchhHHHHHHHHHHhhhhhhcccCCce
Q psy3866 13 SGSHSSMALLHLLQEGMQLSSHKRILFS 40 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~~~~~~~~~~ 40 (70)
.=|.||+-++.++.. +.+ ++|.+
T Consensus 34 dLg~DSLd~velv~~-lE~----~f~I~ 56 (84)
T PRK05828 34 ELKIDSLDMFSIIVS-LES----EFNIE 56 (84)
T ss_pred hcCCCHHHHHHHHHH-HHH----HHCCC
Confidence 358899999999987 553 55554
No 263
>PRK05350 acyl carrier protein; Provisional
Probab=23.90 E-value=61 Score=18.35 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=17.3
Q ss_pred cCchhHHHHHHHHHHhhhhhhcccCCce
Q psy3866 13 SGSHSSMALLHLLQEGMQLSSHKRILFS 40 (70)
Q Consensus 13 SGG~DS~~Ll~ll~~~l~~~~~~~~~~~ 40 (70)
.-|.||+-.+.++.. +.+ ++|.+
T Consensus 35 dlg~DSld~veli~~-lE~----~fgI~ 57 (82)
T PRK05350 35 DLDLDSIDAVDLVVH-LQK----LTGKK 57 (82)
T ss_pred hcCCCHHHHHHHHHH-HHH----HHCCc
Confidence 358999999999987 553 55554
No 264
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=23.89 E-value=82 Score=21.70 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=24.2
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
.=||++.|=| |+.++.||++.+.. +.+.-++++.++=
T Consensus 96 PfILaGHSQG--s~~l~~LL~e~~~~---~pl~~rLVAAYli 132 (207)
T PF11288_consen 96 PFILAGHSQG--SMHLLRLLKEEIAG---DPLRKRLVAAYLI 132 (207)
T ss_pred CEEEEEeChH--HHHHHHHHHHHhcC---chHHhhhheeeec
Confidence 4578888888 78888888885442 2234456665553
No 265
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=23.67 E-value=65 Score=20.09 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=10.9
Q ss_pred CCCCeEEEEecCch
Q psy3866 3 RPQDKVLVAFSGSH 16 (70)
Q Consensus 3 ~~~~kvlva~SGG~ 16 (70)
+..+|+++.|||+-
T Consensus 57 ~~~~rvllVf~G~d 70 (106)
T PF09895_consen 57 KIEGRVLLVFSGSD 70 (106)
T ss_pred CcCCcEEEEEeCCC
Confidence 46788999998873
No 266
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=23.52 E-value=39 Score=24.25 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCeEEEEecCchhHH-----HHHHHHHHhhhhhhcccCCce-EEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSM-----ALLHLLQEGMQLSSHKRILFS-VCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~-----~Ll~ll~~~l~~~~~~~~~~~-~~~v~vd~~~ 50 (70)
+..|++.+|-|.-.. .+..++.. + .++.+++ ++++|.||+.
T Consensus 42 ~sPvIlq~~~~~~~~~~g~~~~~~~~~~-~----a~~~~~~VPV~lHLDHg~ 88 (288)
T TIGR00167 42 KSPVIIQFSNGAAKYIAGLGAISAMVKA-M----SEAYPYGVPVALHLDHGA 88 (288)
T ss_pred CCCEEEECCcchhhccCCHHHHHHHHHH-H----HHhccCCCcEEEECCCCC
Confidence 345666666553322 23333333 2 2344333 5899999995
No 267
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.48 E-value=46 Score=24.74 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=21.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-...=+.++...++ +..++..--++++|.||+-
T Consensus 42 ~sPvIiq~s~~~~~~~g~~~~~~~~~-~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 42 DSPVILQASAGARKYAGEPFLRHLIL-AAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred CCCEEEECCccHhhhCCHHHHHHHHH-HHHHhCCCCcEEEECCCCC
Confidence 34567777655322111122222111 1222332236899999995
No 268
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=23.46 E-value=90 Score=18.01 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHHhhhhhhcccCCceE
Q psy3866 14 GSHSSMALLHLLQEGMQLSSHKRILFSV 41 (70)
Q Consensus 14 GG~DS~~Ll~ll~~~l~~~~~~~~~~~~ 41 (70)
|=.||+..+.++.. +.+ +++.++
T Consensus 29 GllDS~~~v~Li~~-lE~----ef~I~i 51 (73)
T TIGR01688 29 GLLDSFGTVQLLLE-IQN----QFDIDV 51 (73)
T ss_pred cchhHHHHHHHHHH-HHH----HhCCcc
Confidence 33599999999998 653 566554
No 269
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=23.35 E-value=1.2e+02 Score=21.65 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=14.6
Q ss_pred CCeEEEEecCchhHHHHHHHHHH
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
+.|++++|| |-++|...+.+
T Consensus 98 ~PK~~iGyS---DiTaL~~al~~ 117 (305)
T PRK11253 98 DPLLIVGHS---DFTAIQLALLA 117 (305)
T ss_pred CCCEEEEEc---HHHHHHHHHHH
Confidence 456888888 88888766654
No 270
>PRK08813 threonine dehydratase; Provisional
Probab=23.21 E-value=1.1e+02 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=18.7
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHHH
Q psy3866 4 PQDKVLVAFSGS-HSSMALLHLLQE 27 (70)
Q Consensus 4 ~~~kvlva~SGG-~DS~~Ll~ll~~ 27 (70)
.+++|++-+||| .|...+..++.+
T Consensus 297 ~~~~v~~vlsGgN~d~~~~~~~~~~ 321 (349)
T PRK08813 297 SGKRKCAVVSGGNIDATVLATLLSE 321 (349)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999 788777776654
No 271
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.17 E-value=1.6e+02 Score=18.68 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=22.0
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-++|++|-.-.+--++..++. .+ +.|.++.+++=+.
T Consensus 103 Dv~I~iS~SG~t~~~i~~~~~-ak-----~~Ga~vI~IT~~~ 138 (177)
T cd05006 103 DVLIGISTSGNSPNVLKALEA-AK-----ERGMKTIALTGRD 138 (177)
T ss_pred CEEEEEeCCCCCHHHHHHHHH-HH-----HCCCEEEEEeCCC
Confidence 466777755455555556654 32 4578888887553
No 272
>PF13809 Tubulin_2: Tubulin like
Probab=23.15 E-value=2.4e+02 Score=20.33 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=26.2
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhh--cccCCceEEEEEEeCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSS--HKRILFSVCAIYIDDG 49 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~--~~~~~~~~~~v~vd~~ 49 (70)
|+-.++||.=|-.++++... +++.+ .+.....+.++.+=+.
T Consensus 152 Vv~SlaGGTGSG~~lDia~~-lr~~~~~~~~~~~~i~~~~~lP~ 194 (345)
T PF13809_consen 152 VVGSLAGGTGSGMFLDIAYL-LRDILKQPGQDNPRIYGFFVLPD 194 (345)
T ss_pred EEEecCCccchhHHHHHHHH-HHHHhhcccCCCceEEEEEECCc
Confidence 44567799999999999886 66533 2233445555555444
No 273
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=23.09 E-value=1.3e+02 Score=19.76 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=27.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCC-ceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~-~~~~~v~vd~~~ 50 (70)
..+...|++|||..=..++..+..... +.+.. -++.++.+|+.+
T Consensus 17 ~~~~~~i~lsgG~T~~~~~~~l~~~~~---~~~~~~~~v~v~~~der~ 61 (232)
T cd01399 17 EKPPAVLGLATGSTPLGVYEELIELHK---EGGLSFSNVTTFNLDEYV 61 (232)
T ss_pred hCCCcEEEEcCCCCHHHHHHHHHHHHH---hcCCcHHHeEEEeCceec
Confidence 345678999999765556656654111 11233 368899999774
No 274
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.06 E-value=2.4e+02 Score=19.74 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=28.0
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..|...|....|.-.|-.++.+ |. ..|+.++++.-|-|-
T Consensus 183 Qpi~~~f~t~m~~~~l~~iI~~-l~-----~~g~~VvAivsD~g~ 221 (236)
T PF12017_consen 183 QPIYFDFDTSMDADILKNIIEK-LH-----EIGYNVVAIVSDMGS 221 (236)
T ss_pred ccEEEEecCcCCHHHHHHHHHH-HH-----HCCCEEEEEECCCCc
Confidence 3566777776677777777666 43 478999999999773
No 275
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.78 E-value=1.7e+02 Score=16.97 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
.+.+++.+|-.-.+.-+...++. ++ +.|.++++++-+.+
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~-ak-----~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRF-AK-----ERGAPVILITSNSE 91 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHH-HH-----HTTSEEEEEESSTT
T ss_pred ccceeEeeeccccchhhhhhhHH-HH-----hcCCeEEEEeCCCC
Confidence 34567777755455556666664 43 46778766665443
No 276
>KOG0538|consensus
Probab=22.64 E-value=1.2e+02 Score=22.81 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.8
Q ss_pred cccCCceEEEEEEeCCC
Q psy3866 34 HKRILFSVCAIYIDDGS 50 (70)
Q Consensus 34 ~~~~~~~~~~v~vd~~~ 50 (70)
.++.||+..++|||...
T Consensus 143 aEk~GfkAlvlTvDtP~ 159 (363)
T KOG0538|consen 143 AEKAGFKALVLTVDTPR 159 (363)
T ss_pred HHHcCceEEEEEecccc
Confidence 46899999999999875
No 277
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.60 E-value=1.8e+02 Score=17.24 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=22.2
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+-+++++|-.-.+.-++..++. .+ +.|.++.+++-+..
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~~~-a~-----~~g~~iI~IT~~~~ 81 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAVEQ-AK-----ERGAKIVAITSGGK 81 (119)
T ss_pred CCEEEEEECCCCCHHHHHHHHH-HH-----HCCCEEEEEeCCch
Confidence 3466667755444445555554 22 34788888885443
No 278
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=22.14 E-value=48 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=10.9
Q ss_pred cCCc-eEEEEEEeCCC
Q psy3866 36 RILF-SVCAIYIDDGS 50 (70)
Q Consensus 36 ~~~~-~~~~v~vd~~~ 50 (70)
+... -++++|.||+-
T Consensus 73 ~~~~~VPV~lHLDHg~ 88 (285)
T PRK07709 73 EMNITVPVAIHLDHGS 88 (285)
T ss_pred HcCCCCcEEEECCCCC
Confidence 3443 36899999995
No 279
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=22.14 E-value=2.8e+02 Score=20.31 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
..+||+|-+| +-+=+|.++|.+|. .+.++.++.+|.=||.-
T Consensus 89 ~~~ri~i~VS--K~~HCL~DLL~r~~----~g~L~~eI~~VIsNH~d 129 (287)
T COG0788 89 QRKRIAILVS--KEDHCLGDLLYRWR----IGELPAEIVAVISNHDD 129 (287)
T ss_pred cCceEEEEEe--chHHHHHHHHHHHh----cCCcCCceEEEEcCCHH
Confidence 4568888887 77889999998832 36788899999888764
No 280
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.09 E-value=1.8e+02 Score=17.02 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=22.3
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+-+++++|-.-.+--++..++. .+ +.|.++.+++=+++
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~-a~-----~~g~~vi~iT~~~~ 85 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPH-LK-----RRGAPIIAITGNPN 85 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHH-HH-----HCCCeEEEEeCCCC
Confidence 3456666655444445555554 33 34788888887643
No 281
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.94 E-value=1.8e+02 Score=18.91 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=23.4
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEe
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd 47 (70)
+-+++++|.+-.+--++..++. .+ +.|.++.+++=+
T Consensus 107 ~Dl~i~iS~sG~t~~~~~~~~~-ak-----~~g~~~I~iT~~ 142 (188)
T PRK13937 107 GDVLIGISTSGNSPNVLAALEK-AR-----ELGMKTIGLTGR 142 (188)
T ss_pred CCEEEEEeCCCCcHHHHHHHHH-HH-----HCCCeEEEEeCC
Confidence 3477778766555556666665 32 457888888764
No 282
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=21.84 E-value=1.9e+02 Score=22.80 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=23.6
Q ss_pred ecCchhHHHHHHHHHHhhhhhhcccCCceEE--EEEEeCCC
Q psy3866 12 FSGSHSSMALLHLLQEGMQLSSHKRILFSVC--AIYIDDGS 50 (70)
Q Consensus 12 ~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~--~v~vd~~~ 50 (70)
+-||-||+..+..|.+++++ .....+++ --|||..+
T Consensus 172 iIGGddS~~~A~~Lae~~~~---~g~~i~VIGVPKTIDNDl 209 (550)
T cd00765 172 VIGGDDSNTNAALLAENFRS---KGLKTRVIGVPKTIDGDL 209 (550)
T ss_pred EeCCchHHHHHHHHHHHHHh---cCCCceEEEEeeeecCCC
Confidence 56999999999999885542 22224443 24667665
No 283
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=21.81 E-value=1.5e+02 Score=21.24 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-+.--..=+..+...++. ..++.+. ++++|.||+.
T Consensus 41 ~sPvIlq~~~~~~~~~~~~~~~~~~~~-~a~~~~v-PValHLDH~~ 84 (287)
T PF01116_consen 41 NSPVILQISPSEVKYMGLEYLAAMVKA-AAEEASV-PVALHLDHGK 84 (287)
T ss_dssp TS-EEEEEEHHHHHHHHHHHHHHHHHH-HHHHSTS-EEEEEEEEE-
T ss_pred CCCEEEEcchhhhhhhhHHHHHHHHHH-HHHHcCC-CEEeecccCC
Confidence 456777777543222212222221111 2334544 4699999995
No 284
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=21.69 E-value=1.9e+02 Score=22.74 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=24.4
Q ss_pred EecCchhHHHHHHHHHHhhhhhhcccCCceEE--EEEEeCCC
Q psy3866 11 AFSGSHSSMALLHLLQEGMQLSSHKRILFSVC--AIYIDDGS 50 (70)
Q Consensus 11 a~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~--~v~vd~~~ 50 (70)
-+-||-||+.-+..|.+++++ ...+.+++ --|||..+
T Consensus 166 viIGGdgS~~~A~~Lae~~~~---~g~~i~VIGIPkTIDNDl 204 (539)
T TIGR02477 166 VIIGGDDSNTNAALLAEYFAK---HGLKTQVIGVPKTIDGDL 204 (539)
T ss_pred EEeCCchHHHHHHHHHHHHHh---cCCCceEEEEeeeecCCC
Confidence 356999999999999885542 22334443 34677665
No 285
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=2.3e+02 Score=19.32 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
..+++||=|-|.--+-++.++.. ..++++++-+.|+.
T Consensus 28 ik~~vVAS~tG~tA~k~lemveg----------~lkvVvVthh~Gf~ 64 (186)
T COG1751 28 IKHIVVASSTGYTALKALEMVEG----------DLKVVVVTHHAGFE 64 (186)
T ss_pred cceEEEEecccHHHHHHHHhccc----------CceEEEEEeecccc
Confidence 36789999988766666555543 37889999998883
No 286
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.39 E-value=1.8e+02 Score=19.20 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-+++++|..-.|.-++..++. .+ +.|.++.+++=+.
T Consensus 113 Dv~I~iS~SG~t~~~i~~~~~-ak-----~~g~~iI~iT~~~ 148 (192)
T PRK00414 113 DVLLGISTSGNSGNIIKAIEA-AR-----AKGMKVITLTGKD 148 (192)
T ss_pred CEEEEEeCCCCCHHHHHHHHH-HH-----HCCCeEEEEeCCC
Confidence 366667766555556666665 32 4588888888654
No 287
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.37 E-value=1.9e+02 Score=17.07 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=17.4
Q ss_pred CCeEEEEecCchhHHHHHHHHHH
Q psy3866 5 QDKVLVAFSGSHSSMALLHLLQE 27 (70)
Q Consensus 5 ~~kvlva~SGG~DS~~Ll~ll~~ 27 (70)
..+|++-+.+|..|......|.+
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~ 80 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLD 80 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHH
Confidence 45787888888888888777765
No 288
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.37 E-value=2e+02 Score=18.17 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=21.8
Q ss_pred eEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 7 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 7 kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
-++|++|.+--+--+..+++. .+ +.|.++.+++=+.
T Consensus 74 Dv~I~iS~sG~t~~~i~~~~~-ak-----~~g~~ii~IT~~~ 109 (179)
T TIGR03127 74 DLLIAISGSGETESLVTVAKK-AK-----EIGATVAAITTNP 109 (179)
T ss_pred CEEEEEeCCCCcHHHHHHHHH-HH-----HCCCeEEEEECCC
Confidence 366677765444445555554 22 3578888887654
No 289
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=21.16 E-value=2.1e+02 Score=22.76 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=23.8
Q ss_pred ecCchhHHHHHHHHHHhhhhhhcccCCceEEEE----EEeCCC
Q psy3866 12 FSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI----YIDDGS 50 (70)
Q Consensus 12 ~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v----~vd~~~ 50 (70)
+-||-||+.-+..|.+++++ .+.++.+| |||..+
T Consensus 196 iIGGddS~~~A~~Lae~~~~-----~g~~i~VIGVPKTIDNDL 233 (568)
T PLN02251 196 VIGGDDSNTNACLLAEYFRA-----KNLKTRVIGCPKTIDGDL 233 (568)
T ss_pred EeCCchHHHHHHHHHHHHHh-----cCCCeeEEEeCceEeCCC
Confidence 56999999999999985542 34444444 677665
No 290
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=21.11 E-value=1.3e+02 Score=18.78 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=19.9
Q ss_pred CCeEEEEecCc-hhHHHHHHHHHHhhh
Q psy3866 5 QDKVLVAFSGS-HSSMALLHLLQEGMQ 30 (70)
Q Consensus 5 ~~kvlva~SGG-~DS~~Ll~ll~~~l~ 30 (70)
++++++++||- .|...+...+++...
T Consensus 38 ~~~i~~~~sG~~~D~~~l~~~~~~~~~ 64 (182)
T cd01906 38 DDHIGCAFAGLAADAQTLVERLRKEAQ 64 (182)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHHHHH
Confidence 46799999996 699888877766333
No 291
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=21.11 E-value=2.5e+02 Score=20.44 Aligned_cols=36 Identities=28% Similarity=0.182 Sum_probs=24.7
Q ss_pred ecCchhHHHHHHHHHHhhhhhhcccCCceEE--EEEEeCCC
Q psy3866 12 FSGSHSSMALLHLLQEGMQLSSHKRILFSVC--AIYIDDGS 50 (70)
Q Consensus 12 ~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~--~v~vd~~~ 50 (70)
+-||-||+..++.|.+.+++ +..+.++. --|||..+
T Consensus 98 ~IGGd~s~~~a~~L~e~~~~---~~~~i~vigiPkTIDNDl 135 (338)
T cd00363 98 VIGGDGSYTGADLLTEEWPS---KYQGFNVIGLPGTIDNDI 135 (338)
T ss_pred EeCCHHHHHHHHHHHHHHHh---cCCCccEEEeeecccCCC
Confidence 56999999999999885553 34455553 35667654
No 292
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=20.89 E-value=2.4e+02 Score=18.17 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=22.2
Q ss_pred EEecCch--hHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCCC
Q psy3866 10 VAFSGSH--SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 51 (70)
Q Consensus 10 va~SGG~--DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~~ 51 (70)
|+++|++ --+.++..+.+.+. ..+.++.+++.|.-..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~-----~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR-----VNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-----HcCCCEEEEehhhccc
Confidence 4555542 33556667766443 2466788899996653
No 293
>PRK08185 hypothetical protein; Provisional
Probab=20.86 E-value=63 Score=23.18 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCeEEEEecCchhH---HHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSS---MALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS---~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-. .-+..+++. +. ++... ++++|.||+.
T Consensus 37 ~sPvIl~~~~~~~~~~~~~~~~~~~~-~a----~~~~v-PV~lHLDHg~ 79 (283)
T PRK08185 37 NAPAIIAIHPNELDFLGDNFFAYVRE-RA----KRSPV-PFVIHLDHGA 79 (283)
T ss_pred CCCEEEEeCcchhhhccHHHHHHHHH-HH----HHCCC-CEEEECCCCC
Confidence 45677777655321 224455554 22 34444 4899999995
No 294
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.73 E-value=2.2e+02 Score=20.17 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCC
Q psy3866 4 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49 (70)
Q Consensus 4 ~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~ 49 (70)
+..||+|-.||+ .+.|-.++.. .+ .+.++.++.++.-|+.
T Consensus 88 ~~~ri~vl~Sg~--gsnl~al~~~-~~---~~~~~~~i~~visn~~ 127 (286)
T PRK06027 88 ERKRVVILVSKE--DHCLGDLLWR-WR---SGELPVEIAAVISNHD 127 (286)
T ss_pred cCcEEEEEEcCC--CCCHHHHHHH-HH---cCCCCcEEEEEEEcCh
Confidence 346899999999 4455556654 32 2556788888888863
No 295
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=20.70 E-value=1.7e+02 Score=16.24 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 3 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 3 ~~~~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
...++|++-.++|..+......+..+.- .+.|++ .+.+++-|+
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l----~~~g~~-~v~~l~GG~ 107 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWIL----KKLGFK-NVYILDGGF 107 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHH----HHTTTS-SEEEETTHH
T ss_pred cccccceeeeecccccchhHHHHHHHHH----HHcCCC-CEEEecChH
Confidence 3456677666788777777666443211 135664 445555553
No 296
>PRK02947 hypothetical protein; Provisional
Probab=20.58 E-value=2.1e+02 Score=19.67 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=20.4
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
+++++|-.--+--++.+++. .+ +.|.++.+++=+.
T Consensus 109 v~i~iS~sG~t~~~i~~~~~-a~-----~~g~~vI~iT~~~ 143 (246)
T PRK02947 109 VLIVVSNSGRNPVPIEMALE-AK-----ERGAKVIAVTSLA 143 (246)
T ss_pred EEEEEeCCCCCHHHHHHHHH-HH-----HCCCEEEEEcCCc
Confidence 55555544444445556664 33 4578888887654
No 297
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.47 E-value=2.3e+02 Score=21.31 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.0
Q ss_pred EEEEecCchhHHHHHHHHHHhhhhhhcccCCceE-EEEEEeCCC
Q psy3866 8 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSV-CAIYIDDGS 50 (70)
Q Consensus 8 vlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~-~~v~vd~~~ 50 (70)
.++.|+.|.||.++ +++++.|+ ..+ ++ .++-||++-
T Consensus 278 ~l~SFgCG~Davtt-d~i~eIl~-----~~n-k~ytvlkIDE~t 314 (351)
T COG3580 278 QLVSFGCGLDAVTT-DLIEEILE-----GHN-KIYTVLKIDEGT 314 (351)
T ss_pred EEeecccCcchhHH-HHHHHHHH-----hCC-CeeEEEEecCCC
Confidence 47789999999876 78888665 233 44 889999764
No 298
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=20.31 E-value=1.8e+02 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=32.5
Q ss_pred CeEEEEecCchhHHHHHHHHHHhhhhhhcccCCceEEEEEEeC
Q psy3866 6 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 48 (70)
Q Consensus 6 ~kvlva~SGG~DS~~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~ 48 (70)
+-|.|.-||+..|+..+.-+.+++++. .+..+.++.-+..|.
T Consensus 144 deiyIVtSge~MalYAANNI~kgi~k~-a~~~~~rLgGiIcNs 185 (278)
T COG1348 144 DEIYIVTSGEMMALYAANNIAKGIRKY-AKTGGVRLGGIICNS 185 (278)
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHH-hhcCCcceeeEEecC
Confidence 678999999999999999998888863 233456777666664
No 299
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.08 E-value=46 Score=23.77 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCeEEEEecCchhHH----HHHHHHHHhhhhhhcccCCceEEEEEEeCCC
Q psy3866 5 QDKVLVAFSGSHSSM----ALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50 (70)
Q Consensus 5 ~~kvlva~SGG~DS~----~Ll~ll~~~l~~~~~~~~~~~~~~v~vd~~~ 50 (70)
+..|++.+|-|.-.. .+..+++. +. ++... ++++|.||+.
T Consensus 37 ~sPvIi~~~~~~~~~~~~~~~~~~~~~-~a----~~~~V-PV~lHLDH~~ 80 (276)
T cd00947 37 RSPVILQISEGAIKYAGLELLVAMVKA-AA----ERASV-PVALHLDHGS 80 (276)
T ss_pred CCCEEEEcCcchhhhCCHHHHHHHHHH-HH----HHCCC-CEEEECCCCC
Confidence 356777776543222 23333333 22 23333 5899999995
Done!