RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3866
(70 letters)
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 41.6 bits (98), Expect = 3e-06
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
+ ++LVAFSG S LLH L + + ++ AI++
Sbjct: 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWRT----ENPGVALRAIHVH 51
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 40.8 bits (96), Expect = 5e-06
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
++ V+V SG S+ALLH+ + L ++ V A ++D
Sbjct: 14 LLSEGAAVIVGVSGGPDSLALLHVF---LSLRDEWKL--QVIAAHVD 55
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A
{Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB:
2e21_A* 2e89_A*
Length = 317
Score = 39.9 bits (94), Expect = 1e-05
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 1 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
+ + +VL+AFSG S+ L +L ++L ++ + V + +
Sbjct: 20 IFSGERRVLIAFSGGVDSVVLTDVL---LKLKNYFSL-KEVALAHFN 62
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus}
PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Length = 237
Score = 28.5 bits (63), Expect = 0.13
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 2 MRPQDKVLVAFS-GSHSSMALLHLLQEGMQL 31
M V V +S G S+ AL ++ +
Sbjct: 1 MVGLADVAVLYSGGKDSNYALYWAIKNRFSV 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.23
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 9 LVAFSGS---HSSMALLH----LLQEGMQLSSHKRILFSVCAIYIDDGSIS 52
L + + S + ++ +Q + R + + A I+ G ++
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA--INPGRVA 1818
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 26.1 bits (56), Expect = 0.90
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 4 PQDKVLVAFSGSHSSMALLHLLQEGMQ 30
++ +++G LL L +
Sbjct: 57 LNGEISFSYNGGKDCQVLLLLYLSCLW 83
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 26.0 bits (58), Expect = 1.0
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 42 CAIYI--DDGSISQVSKSKLNPNFGSVCP 68
C + + DG + + N N G +C
Sbjct: 20 CGVLVGVKDGKAVAIQGNPNNHNAGLLCL 48
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 26.0 bits (56), Expect = 1.1
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 3 RPQDKVLVAFSGSHSSMALLHLL 25
++ +++G LL L
Sbjct: 51 PLNGEISFSYNGGKDCQVLLLLY 73
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 25.5 bits (56), Expect = 1.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 1 MMRPQDKVLVAFSGSH-SSMALLHLLQEG 28
+M V V FSG SS++ + L + G
Sbjct: 6 LM----DVHVLFSGGKDSSLSAVILKKLG 30
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 25.2 bits (56), Expect = 1.7
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1 MMRPQDKVLVAFSGS-HSSMALLHLLQEG 28
M KV+V SG SS++ L Q+G
Sbjct: 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQG 41
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
TM0231, JCSG, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Length = 469
Score = 25.2 bits (56), Expect = 1.8
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 2 MRPQDKVLVAFSGSH-----SSMALLHLLQEG 28
++ + K A +G+ ++M + H+L+
Sbjct: 109 LKREKKEEFAVTGTDGKTTTTAM-VAHVLKHL 139
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 24.7 bits (54), Expect = 2.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 6 DKVLVAFSGSHSSMALLHLLQE 27
+ +++ S + LHL+ +
Sbjct: 46 GEYVLSSSFGIQAAVSLHLVNQ 67
>3loq_A Universal stress protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus
fulgidus}
Length = 294
Score = 24.6 bits (54), Expect = 3.2
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 1 MMRPQDKVLVAFSGSHSSMALL 22
+ + +L+ S +S +L
Sbjct: 18 LYFQSNAMLLPTDLSENSFKVL 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.383
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 976,086
Number of extensions: 41529
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 14
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)