RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3866
         (70 letters)



>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase,
          N-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 168

 Score = 35.5 bits (80), Expect = 1e-04
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 5  QDKVLVAFSGSHSSMALLHLLQE 27
          ++KV++A+SG   +  +L  L E
Sbjct: 1  KEKVVLAYSGGLDTSVILKWLCE 23


>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 216

 Score = 35.7 bits (81), Expect = 1e-04
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 1  MMRPQDKVLVAFSGSHSSMALLHLLQE 27
          +   + +VL+AFSG   S+ L  +L +
Sbjct: 20 IFSGERRVLIAFSGGVDSVVLTDVLLK 46


>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 227

 Score = 33.9 bits (76), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 4  PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 47
             ++LVAFSG   S  LLH L +       +    ++ AI++ 
Sbjct: 12 TSRQILVAFSGGLDSTVLLHQLVQ----WRTENPGVALRAIHVH 51


>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase,
          N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 165

 Score = 33.6 bits (75), Expect = 7e-04
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 7  KVLVAFSGSHSSMALLHLLQE 27
          K+++A+SG   +  +L  L+E
Sbjct: 2  KIVLAYSGGLDTSIILKWLKE 22


>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 30.4 bits (67), Expect = 0.009
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 7  KVLVAFSGSHSSMALLHLLQE 27
          ++ +AFSG   + A L  +++
Sbjct: 12 RIGIAFSGGLDTSAALLWMRQ 32


>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
          C-terminal domain {Bacillus anthracis [TaxId: 1392]}
          Length = 218

 Score = 30.3 bits (67), Expect = 0.010
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 5  QDKVLVAFSGSHSSMALLHLLQE 27
            KV+V  SG   S    +L  +
Sbjct: 4  GGKVMVLLSGGIDSPVAAYLTMK 26


>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
          CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 211

 Score = 28.5 bits (62), Expect = 0.043
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 5/45 (11%)

Query: 6  DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 50
          D  ++ +S    S  +LHL        +          +++D   
Sbjct: 27 DNPVMLYSIGKDSAVMLHLA-----RKAFFPGKLPFPVMHVDTRW 66


>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
          N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
          Length = 268

 Score = 25.0 bits (53), Expect = 0.75
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 1  MMRPQDKVLVAFSGSHSSMALLHLLQEGMQ 30
          MM  Q +V+V  SG     + L L ++G  
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYS 31


>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
          Pyrococcus horikoshii [TaxId: 53953]}
          Length = 226

 Score = 24.9 bits (54), Expect = 0.81
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 7  KVLVAFS-GSHSSMALLHLLQEGMQL 31
           V V +S G  S+ AL   L+ G+++
Sbjct: 5  DVAVLYSGGKDSNYALYWALKSGLRV 30


>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
          {Escherichia coli [TaxId: 562]}
          Length = 215

 Score = 24.7 bits (53), Expect = 1.1
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 9/44 (20%)

Query: 6  DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 49
           + +++ S    +   LHL+          +I   +  I  D G
Sbjct: 45 GEYVLSSSFGIQAAVSLHLV---------NQIRPDIPVILTDTG 79


>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
          {Erwinia carotovora [TaxId: 554]}
          Length = 230

 Score = 24.2 bits (51), Expect = 1.5
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 7  KVLVAFSGSHSSMALLHLLQE 27
          + +V FSG   S   L    +
Sbjct: 3  RAVVVFSGGQDSTTCLIQALQ 23


>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA
          {Haemophilus influenzae [TaxId: 727]}
          Length = 140

 Score = 23.0 bits (48), Expect = 3.8
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 7  KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC 42
           +LVA   S  S  LL       +    K  +  V 
Sbjct: 4  HILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39


>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 147

 Score = 22.2 bits (46), Expect = 6.9
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 2  MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQV 54
          +     V+V   GS SSM  +    +     +   I  +    + D  +   +
Sbjct: 2  LSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADIL 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,665
Number of extensions: 7616
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 14
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)