Query psy3867
Match_columns 521
No_of_seqs 266 out of 2086
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:27:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2594|consensus 100.0 1.8E-42 3.9E-47 344.8 20.6 314 60-383 11-336 (396)
2 PRK10696 tRNA 2-thiocytidine b 100.0 9.9E-32 2.1E-36 269.1 27.3 230 89-361 10-242 (258)
3 PF01171 ATP_bind_3: PP-loop f 100.0 1.2E-28 2.7E-33 234.1 17.7 178 110-334 1-181 (182)
4 COG0037 MesJ tRNA(Ile)-lysidin 100.0 1.1E-27 2.4E-32 243.9 24.7 242 86-375 1-251 (298)
5 PRK10660 tilS tRNA(Ile)-lysidi 99.9 3.4E-26 7.3E-31 244.7 24.0 208 105-361 12-222 (436)
6 TIGR02432 lysidine_TilS_N tRNA 99.9 4.8E-25 1E-29 210.2 21.1 184 110-336 1-187 (189)
7 cd01993 Alpha_ANH_like_II This 99.9 7.1E-25 1.5E-29 207.5 16.2 178 110-321 1-182 (185)
8 cd01992 PP-ATPase N-terminal d 99.9 3.8E-24 8.3E-29 202.9 20.7 182 110-337 1-184 (185)
9 KOG2840|consensus 99.9 1E-23 2.2E-28 209.8 11.6 286 64-381 6-298 (347)
10 PRK08349 hypothetical protein; 99.8 1.5E-19 3.3E-24 174.1 19.0 186 110-345 2-197 (198)
11 PF10288 DUF2392: Protein of u 99.8 6.3E-21 1.4E-25 166.0 7.4 101 258-358 1-107 (107)
12 PRK00143 mnmA tRNA-specific 2- 99.8 3.1E-20 6.8E-25 193.4 12.7 205 110-350 2-216 (346)
13 cd01997 GMP_synthase_C The C-t 99.8 7.9E-20 1.7E-24 185.8 14.2 161 110-313 1-166 (295)
14 TIGR00884 guaA_Cterm GMP synth 99.8 4E-19 8.6E-24 182.1 17.8 173 87-313 2-181 (311)
15 PRK00074 guaA GMP synthase; Re 99.8 5E-19 1.1E-23 193.0 17.0 190 108-342 215-412 (511)
16 PRK00919 GMP synthase subunit 99.8 3.4E-18 7.4E-23 174.4 18.0 158 109-314 22-180 (307)
17 cd01712 ThiI ThiI is required 99.8 1.6E-17 3.5E-22 157.1 18.2 156 110-316 1-161 (177)
18 cd01990 Alpha_ANH_like_I This 99.8 2.6E-18 5.7E-23 165.7 10.1 151 111-320 1-155 (202)
19 PRK14665 mnmA tRNA-specific 2- 99.7 1.4E-17 3E-22 173.8 12.9 177 104-314 1-183 (360)
20 cd01998 tRNA_Me_trans tRNA met 99.7 1.3E-17 2.9E-22 174.0 11.3 206 110-349 1-216 (349)
21 TIGR00268 conserved hypothetic 99.7 3.1E-17 6.7E-22 163.9 12.8 151 107-318 11-165 (252)
22 PRK08384 thiamine biosynthesis 99.7 2E-16 4.4E-21 165.9 15.7 150 108-312 180-339 (381)
23 PRK05253 sulfate adenylyltrans 99.7 4.3E-16 9.2E-21 158.8 17.4 181 90-315 15-207 (301)
24 TIGR00420 trmU tRNA (5-methyla 99.7 4.6E-17 1E-21 169.8 9.3 176 109-316 1-189 (352)
25 PRK14664 tRNA-specific 2-thiou 99.7 3.9E-17 8.5E-22 170.1 8.1 170 104-313 1-177 (362)
26 cd01713 PAPS_reductase This do 99.7 2.7E-16 5.9E-21 145.6 12.8 160 110-314 1-162 (173)
27 PRK14561 hypothetical protein; 99.7 7.9E-16 1.7E-20 147.9 14.3 142 110-309 2-146 (194)
28 TIGR00342 thiazole biosynthesi 99.7 2.9E-15 6.3E-20 157.6 18.4 151 107-311 171-328 (371)
29 PRK13820 argininosuccinate syn 99.6 2.5E-15 5.5E-20 157.8 15.5 155 108-316 2-166 (394)
30 PRK01269 tRNA s(4)U8 sulfurtra 99.6 3.8E-15 8.3E-20 161.8 16.5 197 108-355 177-375 (482)
31 TIGR02039 CysD sulfate adenyly 99.6 1E-14 2.2E-19 147.7 17.0 180 90-314 7-198 (294)
32 TIGR00552 nadE NAD+ synthetase 99.6 7.8E-15 1.7E-19 146.5 14.2 169 90-314 8-178 (250)
33 PF03054 tRNA_Me_trans: tRNA m 99.6 1.7E-15 3.6E-20 157.4 7.6 175 109-315 1-189 (356)
34 COG1606 ATP-utilizing enzymes 99.6 2.4E-14 5.2E-19 139.3 14.8 157 107-323 16-179 (269)
35 COG0482 TrmU Predicted tRNA(5- 99.6 7.8E-15 1.7E-19 150.6 11.1 205 108-350 3-219 (356)
36 cd01995 ExsB ExsB is a transcr 99.6 2.7E-14 5.9E-19 133.9 13.5 136 110-317 1-144 (169)
37 PRK08576 hypothetical protein; 99.6 4.1E-14 8.9E-19 150.4 16.0 172 84-313 214-387 (438)
38 PRK01565 thiamine biosynthesis 99.6 9.3E-14 2E-18 147.4 16.9 156 107-312 175-333 (394)
39 TIGR00364 exsB protein. This p 99.5 1E-13 2.2E-18 133.9 13.4 169 111-316 1-181 (201)
40 PRK00509 argininosuccinate syn 99.5 2.7E-13 5.9E-18 142.6 15.0 157 109-315 3-168 (399)
41 TIGR00032 argG argininosuccina 99.5 3.5E-13 7.6E-18 142.1 14.9 158 110-317 1-166 (394)
42 PF02568 ThiI: Thiamine biosyn 99.5 4E-13 8.7E-18 128.8 13.0 152 109-311 4-161 (197)
43 PRK02090 phosphoadenosine phos 99.5 3.8E-13 8.2E-18 133.7 12.9 152 109-313 41-194 (241)
44 PRK12563 sulfate adenylyltrans 99.5 1.4E-12 3E-17 132.9 16.2 166 110-314 39-216 (312)
45 PLN00200 argininosuccinate syn 99.5 5.3E-13 1.1E-17 140.7 13.4 160 108-316 5-173 (404)
46 cd01999 Argininosuccinate_Synt 99.4 8.9E-13 1.9E-17 138.7 14.6 161 111-320 1-171 (385)
47 cd00553 NAD_synthase NAD+ synt 99.4 1.1E-12 2.4E-17 130.8 14.5 170 90-314 9-180 (248)
48 PLN02347 GMP synthetase 99.4 1.3E-12 2.7E-17 143.0 14.0 166 105-312 226-404 (536)
49 PRK13980 NAD synthetase; Provi 99.4 7E-12 1.5E-16 126.3 17.9 167 86-312 12-180 (265)
50 PRK11106 queuosine biosynthesi 99.4 4.1E-12 8.9E-17 125.1 14.2 175 109-320 2-189 (231)
51 COG0519 GuaA GMP synthase, PP- 99.4 4E-12 8.7E-17 124.9 13.7 176 86-314 6-186 (315)
52 TIGR03573 WbuX N-acetyl sugar 99.4 5.1E-12 1.1E-16 131.8 15.0 157 62-257 2-172 (343)
53 PF06508 QueC: Queuosine biosy 99.4 3.2E-12 6.9E-17 124.3 11.1 171 110-320 1-184 (209)
54 cd01986 Alpha_ANH_like Adenine 99.4 6.5E-12 1.4E-16 108.3 11.7 103 111-295 1-103 (103)
55 PRK04527 argininosuccinate syn 99.3 5.8E-12 1.3E-16 132.3 11.9 158 108-316 2-171 (400)
56 cd01996 Alpha_ANH_like_III Thi 99.2 6.9E-11 1.5E-15 108.9 10.6 112 110-258 3-115 (154)
57 PF01507 PAPS_reduct: Phosphoa 99.2 6.4E-11 1.4E-15 110.6 8.4 154 110-314 1-156 (174)
58 COG0603 Predicted PP-loop supe 99.2 4.1E-10 9E-15 109.0 13.8 171 109-320 3-187 (222)
59 COG0301 ThiI Thiamine biosynth 99.2 7.1E-10 1.5E-14 115.6 15.6 155 108-312 175-333 (383)
60 PRK05370 argininosuccinate syn 99.1 2.5E-10 5.4E-15 120.3 12.0 165 105-315 8-185 (447)
61 TIGR02057 PAPS_reductase phosp 99.1 2.6E-09 5.5E-14 105.2 17.2 159 108-314 25-185 (226)
62 KOG2805|consensus 99.1 1.1E-10 2.5E-15 116.1 5.5 206 108-349 5-227 (377)
63 TIGR00434 cysH phosophoadenyly 99.0 3.9E-09 8.4E-14 102.8 14.9 154 109-313 14-169 (212)
64 PF02540 NAD_synthase: NAD syn 99.0 2.7E-09 5.9E-14 106.1 13.7 167 89-314 3-171 (242)
65 COG0137 ArgG Argininosuccinate 99.0 4E-09 8.6E-14 108.6 13.8 162 107-316 3-171 (403)
66 TIGR00269 conserved hypothetic 99.0 1.5E-09 3.4E-14 94.0 8.8 92 288-383 1-95 (104)
67 cd01994 Alpha_ANH_like_IV This 99.0 9.2E-09 2E-13 99.0 14.8 141 110-316 1-143 (194)
68 PRK08557 hypothetical protein; 99.0 1.9E-08 4.1E-13 107.1 16.7 153 108-313 181-338 (417)
69 PTZ00323 NAD+ synthase; Provis 98.9 4.2E-08 9.2E-13 100.0 17.7 184 80-312 22-211 (294)
70 PRK02628 nadE NAD synthetase; 98.9 2.4E-08 5.3E-13 113.1 16.2 169 90-309 347-521 (679)
71 PRK13794 hypothetical protein; 98.9 2.9E-08 6.2E-13 107.9 16.1 155 108-314 247-405 (479)
72 TIGR03679 arCOG00187 arCOG0018 98.9 2.5E-08 5.4E-13 97.7 13.3 138 112-316 1-141 (218)
73 PRK13795 hypothetical protein; 98.9 4.3E-08 9.2E-13 110.2 16.9 155 108-314 243-401 (636)
74 COG2117 Predicted subunit of t 98.9 7.8E-09 1.7E-13 94.2 8.3 147 110-312 2-152 (198)
75 COG0175 CysH 3'-phosphoadenosi 98.8 2E-08 4.2E-13 101.1 11.2 155 110-314 41-197 (261)
76 TIGR03183 DNA_S_dndC putative 98.8 1.7E-07 3.6E-12 100.4 16.9 185 108-314 13-205 (447)
77 PRK06850 hypothetical protein; 98.8 3.1E-07 6.7E-12 99.5 18.6 184 108-314 34-224 (507)
78 PF00764 Arginosuc_synth: Argi 98.7 3.7E-08 8.1E-13 103.3 10.3 156 112-316 1-164 (388)
79 PRK00876 nadE NAD synthetase; 98.7 1.9E-07 4.1E-12 96.5 15.3 189 87-313 15-238 (326)
80 PRK13981 NAD synthetase; Provi 98.6 5.7E-07 1.2E-11 99.6 16.3 168 87-310 263-433 (540)
81 PRK00768 nadE NAD synthetase; 98.6 2.2E-06 4.8E-11 86.1 17.0 171 89-312 23-200 (268)
82 COG0171 NadE NAD synthase [Coe 98.4 1.2E-05 2.6E-10 80.9 17.2 158 109-313 26-186 (268)
83 KOG1622|consensus 98.4 2.9E-07 6.3E-12 95.9 5.8 166 108-315 230-408 (552)
84 cd01984 AANH_like Adenine nucl 98.4 8.8E-07 1.9E-11 73.4 6.6 33 233-265 36-68 (86)
85 TIGR00289 conserved hypothetic 98.2 2.9E-05 6.2E-10 76.2 14.8 136 110-316 2-139 (222)
86 cd01991 Asn_Synthase_B_C The C 98.2 4E-06 8.8E-11 83.9 9.0 118 105-260 12-131 (269)
87 TIGR00424 APS_reduc 5'-adenyly 98.2 2.2E-05 4.8E-10 84.7 14.3 160 109-314 116-280 (463)
88 COG3969 Predicted phosphoadeno 98.2 0.00011 2.3E-09 74.9 17.5 186 108-313 27-232 (407)
89 PF00733 Asn_synthase: Asparag 98.1 3.2E-05 6.9E-10 76.1 12.8 130 92-259 3-134 (255)
90 TIGR02055 APS_reductase thiore 98.1 3E-05 6.6E-10 74.5 11.9 145 118-313 2-148 (191)
91 KOG1706|consensus 98.1 1.9E-05 4.1E-10 79.1 9.9 160 108-317 5-176 (412)
92 TIGR01536 asn_synth_AEB aspara 98.0 3.1E-05 6.6E-10 84.4 10.8 132 89-258 236-369 (467)
93 TIGR00290 MJ0570_dom MJ0570-re 97.9 0.00031 6.7E-09 69.0 14.6 135 110-316 2-140 (223)
94 PLN02309 5'-adenylylsulfate re 97.8 0.00031 6.8E-09 75.9 14.5 160 109-314 111-275 (457)
95 COG1365 Predicted ATPase (PP-l 97.8 7.6E-05 1.6E-09 71.5 8.5 144 108-313 60-204 (255)
96 PF01902 ATP_bind_4: ATP-bindi 97.7 0.00039 8.5E-09 68.1 11.1 161 110-342 2-166 (218)
97 COG2102 Predicted ATPases of P 97.3 0.0056 1.2E-07 59.6 13.8 137 110-316 2-141 (223)
98 PLN02549 asparagine synthase ( 97.0 0.0041 8.8E-08 69.6 11.3 135 90-259 209-349 (578)
99 PLN02339 NAD+ synthase (glutam 96.8 0.015 3.2E-07 66.6 13.4 172 108-312 348-561 (700)
100 PTZ00077 asparagine synthetase 96.8 0.012 2.7E-07 65.9 12.5 133 90-259 221-363 (586)
101 PRK09431 asnB asparagine synth 96.5 0.019 4.1E-07 64.1 11.7 134 89-259 210-355 (554)
102 TIGR03108 eps_aminotran_1 exos 96.3 0.039 8.4E-07 62.5 12.5 79 90-185 242-322 (628)
103 TIGR03104 trio_amidotrans aspa 96.1 0.03 6.4E-07 63.0 10.3 81 90-184 244-326 (589)
104 COG0367 AsnB Asparagine syntha 95.8 0.087 1.9E-06 58.6 12.4 132 87-259 211-346 (542)
105 KOG0571|consensus 95.1 0.1 2.3E-06 55.2 9.2 136 91-259 210-347 (543)
106 PF02677 DUF208: Uncharacteriz 95.0 0.37 8E-06 45.6 11.8 109 111-252 1-111 (176)
107 cd01987 USP_OKCHK USP domain i 94.9 0.6 1.3E-05 40.5 12.3 95 110-257 1-97 (124)
108 PRK10490 sensor protein KdpD; 94.3 0.42 9E-06 56.6 12.7 99 106-257 248-348 (895)
109 cd01989 STK_N The N-terminal d 92.9 1.1 2.4E-05 40.1 10.3 38 110-152 1-38 (146)
110 cd00293 USP_Like Usp: Universa 91.8 1.6 3.4E-05 37.1 9.6 39 110-153 1-39 (130)
111 KOG0189|consensus 91.6 2.2 4.8E-05 41.3 10.8 159 109-314 47-205 (261)
112 KOG0573|consensus 91.4 0.65 1.4E-05 49.7 7.7 39 108-152 250-288 (520)
113 cd01988 Na_H_Antiporter_C The 90.6 3.6 7.8E-05 35.6 10.8 38 110-152 1-38 (132)
114 PRK09982 universal stress prot 90.3 3.3 7.1E-05 37.2 10.6 39 109-152 4-42 (142)
115 COG2205 KdpD Osmosensitive K+ 89.9 7.6 0.00017 44.9 14.8 72 107-184 247-320 (890)
116 PRK15118 universal stress glob 86.8 9.7 0.00021 33.8 11.1 39 109-152 4-42 (144)
117 COG1636 Uncharacterized protei 84.4 10 0.00022 36.3 10.1 110 109-250 4-115 (204)
118 cd05565 PTS_IIB_lactose PTS_II 80.8 6 0.00013 34.0 6.6 71 110-184 2-81 (99)
119 PRK15005 universal stress prot 77.7 20 0.00043 31.6 9.5 38 109-151 3-42 (144)
120 PRK10116 universal stress prot 76.3 42 0.0009 29.5 11.1 37 109-150 4-40 (142)
121 PTZ00218 40S ribosomal protein 76.1 1.9 4.1E-05 32.8 1.8 31 61-92 16-46 (54)
122 PF00582 Usp: Universal stress 74.2 30 0.00066 29.2 9.5 40 109-153 3-42 (140)
123 PRK09590 celB cellobiose phosp 73.5 10 0.00022 32.8 6.1 71 110-185 3-85 (104)
124 TIGR00853 pts-lac PTS system, 73.2 11 0.00025 31.9 6.2 71 109-185 4-85 (95)
125 PRK15456 universal stress prot 68.8 42 0.00092 29.7 9.4 38 109-152 3-42 (142)
126 cd05564 PTS_IIB_chitobiose_lic 63.2 20 0.00043 30.3 5.7 69 110-184 1-80 (96)
127 PRK10499 PTS system N,N'-diace 58.2 73 0.0016 27.5 8.4 40 109-151 4-43 (106)
128 PRK12652 putative monovalent c 55.4 1.4E+02 0.0031 31.6 11.6 39 108-151 5-45 (357)
129 COG0199 RpsN Ribosomal protein 50.5 12 0.00027 29.2 2.0 28 60-90 20-47 (61)
130 PF02302 PTS_IIB: PTS system, 49.7 42 0.00092 27.3 5.4 36 110-150 1-37 (90)
131 PF00412 LIM: LIM domain; Int 48.4 14 0.0003 27.6 2.1 29 62-90 27-57 (58)
132 PRK05766 rps14P 30S ribosomal 47.8 19 0.00042 27.2 2.7 31 61-92 14-44 (52)
133 KOG2316|consensus 46.0 24 0.00053 34.7 3.7 65 235-315 96-161 (277)
134 PRK11175 universal stress prot 45.9 1.2E+02 0.0027 30.3 9.3 21 236-256 252-272 (305)
135 cd01400 6PGL 6PGL: 6-Phosphogl 45.2 1E+02 0.0022 30.0 8.2 70 89-173 9-79 (219)
136 PRK11175 universal stress prot 44.7 1.5E+02 0.0033 29.7 9.7 36 109-149 4-39 (305)
137 PLN02360 probable 6-phosphoglu 41.6 1.1E+02 0.0024 30.8 8.1 71 89-172 28-99 (268)
138 KOG3425|consensus 40.4 1E+02 0.0022 27.6 6.3 53 95-155 15-77 (128)
139 TIGR01198 pgl 6-phosphoglucono 39.9 1.5E+02 0.0033 29.1 8.6 69 89-173 14-83 (233)
140 KOG2303|consensus 39.7 1.1E+02 0.0025 33.7 7.9 22 109-130 350-371 (706)
141 PF06858 NOG1: Nucleolar GTP-b 38.4 1.1E+02 0.0024 23.7 5.6 39 143-181 15-53 (58)
142 PTZ00285 glucosamine-6-phospha 36.6 1.1E+02 0.0024 30.4 7.1 77 90-173 15-93 (253)
143 KOG3147|consensus 35.6 2.1E+02 0.0045 28.8 8.4 45 107-155 38-83 (252)
144 COG1440 CelA Phosphotransferas 32.1 1.7E+02 0.0038 25.3 6.4 73 109-185 2-83 (102)
145 PF01182 Glucosamine_iso: Gluc 31.2 1.7E+02 0.0036 28.1 7.0 72 89-173 7-79 (199)
146 cd01523 RHOD_Lact_B Member of 30.9 1.1E+02 0.0023 25.3 5.0 38 105-153 58-95 (100)
147 COG2191 Formylmethanofuran deh 30.5 19 0.00042 34.8 0.4 28 62-90 173-203 (206)
148 COG0794 GutQ Predicted sugar p 30.2 76 0.0017 30.9 4.4 43 103-152 82-124 (202)
149 TIGR00502 nagB glucosamine-6-p 27.9 3.1E+02 0.0066 27.4 8.6 76 91-173 16-93 (259)
150 PRK11070 ssDNA exonuclease Rec 27.6 6.3E+02 0.014 28.6 11.8 66 105-180 66-132 (575)
151 PF13923 zf-C3HC4_2: Zinc fing 27.3 67 0.0015 22.1 2.6 30 64-93 1-32 (39)
152 PF02441 Flavoprotein: Flavopr 26.8 64 0.0014 28.5 3.1 33 109-147 1-33 (129)
153 KOG0933|consensus 26.5 70 0.0015 38.0 4.0 63 115-187 1083-1148(1174)
154 PF13240 zinc_ribbon_2: zinc-r 25.9 42 0.00092 20.8 1.2 20 63-87 1-20 (23)
155 cd01520 RHOD_YbbB Member of th 25.8 1.9E+02 0.0041 25.3 6.0 38 105-153 83-121 (128)
156 PRK08305 spoVFB dipicolinate s 25.1 1.1E+02 0.0024 29.6 4.5 36 107-148 4-40 (196)
157 PF06827 zf-FPG_IleRS: Zinc fi 23.2 33 0.00071 22.4 0.4 27 61-87 1-28 (30)
158 PRK07667 uridine kinase; Provi 23.0 1E+02 0.0023 29.1 4.0 46 97-151 8-55 (193)
159 PRK05920 aromatic acid decarbo 22.8 1.1E+02 0.0024 29.8 4.1 35 108-148 3-37 (204)
160 PF13248 zf-ribbon_3: zinc-rib 22.5 58 0.0013 20.6 1.4 22 61-87 2-23 (26)
161 COG0788 PurU Formyltetrahydrof 22.5 7.1E+02 0.015 25.5 9.7 57 107-184 89-147 (287)
162 PRK07313 phosphopantothenoylcy 21.9 95 0.0021 29.5 3.4 33 109-147 2-34 (182)
163 TIGR02113 coaC_strep phosphopa 21.8 1E+02 0.0022 29.2 3.5 34 109-148 1-34 (177)
164 TIGR03826 YvyF flagellar opero 21.1 81 0.0018 28.8 2.6 38 62-103 4-43 (137)
165 PF14471 DUF4428: Domain of un 20.8 68 0.0015 24.0 1.7 27 63-90 1-30 (51)
166 COG0669 CoaD Phosphopantethein 20.5 6.9E+02 0.015 23.4 8.5 18 236-253 73-90 (159)
No 1
>KOG2594|consensus
Probab=100.00 E-value=1.8e-42 Score=344.76 Aligned_cols=314 Identities=30% Similarity=0.473 Sum_probs=227.8
Q ss_pred cCccccccCCC-CceEEecCCcccchHHHHHHHHHHHHH--HHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhc
Q psy3867 60 ADKLCPRCNTN-NGEVVLRLKDIYCKACLLQYLNHKFRA--ALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSS 136 (521)
Q Consensus 60 ~~~~C~kCk~~-~a~i~~r~~~~~Cr~CF~~~i~~Kfr~--~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~ 136 (521)
.+..|+||... ....+...+++||.+||.+++++|||+ +....++.++.+.+|+++|||.+|+|||++++-++.+..
T Consensus 11 ~~s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k 90 (396)
T KOG2594|consen 11 HESACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLK 90 (396)
T ss_pred CcccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhh
Confidence 35789999653 444455667899999999999999999 666678888999999999999999999999996677655
Q ss_pred cccc--ceeEEEE-EEeCCCCCccChHHHHHHHHHHHHHhccCCEEE--EEcccccC-CchhhhhhcccCCchhhhchhh
Q psy3867 137 HKRI--LFSVCAI-YIDDGSISQVSISERKANNAQIATAMKYFDSYF--TCLEQALE-PDNMKLYTDVAELPLEQFAKDS 210 (521)
Q Consensus 137 ~kr~--~f~v~~v-~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~i--v~l~evf~-~~~~~~~~~~~~~~~~~~~~~~ 210 (521)
.+++ +|.+.++ +.-++. .+....+...+.+.+..+..+|.| +...+.+. ...........++ ..+.+
T Consensus 91 ~~~~~~~~tv~v~~~~~~~~---~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El----~ak~~ 163 (396)
T KOG2594|consen 91 NKRLRRDFTVLVLVVFQEFT---DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDEL----IAKDR 163 (396)
T ss_pred hhhcCcCCceEEEEEEEecc---chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCcee----ecchh
Confidence 5544 4443333 222322 121212211122222222444444 22232222 1110000001111 11112
Q ss_pred hhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC-CCCee
Q psy3867 211 EINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDR-TGDII 289 (521)
Q Consensus 211 ~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~-~~~v~ 289 (521)
++ .+.+++++.+ |+|++.++|.++|.++|.++||++|++||+++|+|..+|+.+++|||.++++++...|.+ .++++
T Consensus 164 kl-~~~~sv~~~s-rqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~ 241 (396)
T KOG2594|consen 164 KL-KLSDSVPDDS-RQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVK 241 (396)
T ss_pred hc-ccccccccch-HHHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCce
Confidence 22 2334666665 999999999999999999999999999999999999999999999999999999988776 46899
Q ss_pred eeecCCCCCHHHHHHHHHHCCCCceecC-CCCCC-CCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhhhhcCcc
Q psy3867 290 TLRPLRDFSSKEVIYYNIFNDLSPVHVP-SLATL-ADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMNV 367 (521)
Q Consensus 290 iiRPLrd~~kkEI~~Ya~~~~L~~~~~~-~~~~~-~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~~~~~~~ 367 (521)
++|||+|+.+.||..|+...|+++.+.. ...+. .....+||.++..|+..||.+||++++||+||++||..+...+ .
T Consensus 242 llrPLrDl~~~Ei~~y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s~s~-~ 320 (396)
T KOG2594|consen 242 LLRPLRDLLSLEITSYCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPSFSM-T 320 (396)
T ss_pred eehhHHHHHHHHHHHHHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCCCCC-C
Confidence 9999999999999999999999964421 11110 1245799999999999999999999999999999999874444 5
Q ss_pred cccccccccccCCCcC
Q psy3867 368 NNTCLLCKAPLDTRAD 383 (521)
Q Consensus 368 ~~~C~lC~~~ld~~~~ 383 (521)
+..|.+|.+|++.+++
T Consensus 321 es~C~iCn~~l~~~~s 336 (396)
T KOG2594|consen 321 ESFCPICNSPLNRSDS 336 (396)
T ss_pred cccccccCCcccCCch
Confidence 8899999999998874
No 2
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=9.9e-32 Score=269.11 Aligned_cols=230 Identities=18% Similarity=0.269 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+.++|.++|.+++++.++++|+||+|||+||++|||++++ +... ...+|++.++|||+|.. ++.. +.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~-l~~~--~~~~~~l~av~vd~g~~-~~~~-------~~ 78 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLN-LQKR--APINFELVAVNLDQKQP-GFPE-------HV 78 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHH-HHHh--CCCCeEEEEEEecCCCC-CCCH-------HH
Confidence 678999999999999999999999999999999999999987 4321 23568999999999973 3321 24
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++|+ |+|+++++.+. ++. ... . .....+.|.+|+.+|+.+|.++|+++|+
T Consensus 79 ~~~~~~~lgI~~~v~~~~~-~~~------~~~-~------------------~~~~~~~c~~c~~~R~~~l~~~a~~~g~ 132 (258)
T PRK10696 79 LPEYLESLGVPYHIEEQDT-YSI------VKE-K------------------IPEGKTTCSLCSRLRRGILYRTARELGA 132 (258)
T ss_pred HHHHHHHhCCCEEEEEecc-hhh------hhh-h------------------hccCCChhHHHHHHHHHHHHHHHHHcCC
Confidence 677887 99999998652 211 000 0 0011246889999999999999999999
Q ss_pred CeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecC-CCCCCCCC
Q psy3867 247 TKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVP-SLATLADP 325 (521)
Q Consensus 247 ~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~-~~~~~~~~ 325 (521)
++|++|||+||+++++|+++.+|.| +..+.+......+.+.++|||.+++++||..|++.+++|++..+ |++ ..
T Consensus 133 ~~Ia~GH~~dD~~Et~l~nl~rg~~--l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~~~~~~~---~~ 207 (258)
T PRK10696 133 TKIALGHHRDDILETLFLNMFYGGK--LKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIPCNLCGS---QE 207 (258)
T ss_pred CEEEEcCchHHHHHHHHHHHHhCCc--ccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCEeeCCCCCC---Cc
Confidence 9999999999999999999999854 44433321122356899999999999999999999999998544 343 23
Q ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhh
Q psy3867 326 LASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLD 361 (521)
Q Consensus 326 ~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~ 361 (521)
...+++ ++++++.|++.+|++..+++++..++...
T Consensus 208 ~~~R~~-ir~~l~~L~~~~P~~~~~i~~~~~~~~~~ 242 (258)
T PRK10696 208 NLQRQV-VKEMLRDWEKEYPGRIETMFRALQNVVPS 242 (258)
T ss_pred hhHHHH-HHHHHHHHHHHCccHHHHHHHHHhhcchh
Confidence 334444 46999999999999999999999999865
No 3
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.96 E-value=1.2e-28 Score=234.14 Aligned_cols=178 Identities=25% Similarity=0.287 Sum_probs=126.5
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
||+||+|||+||++||++|.+ +. ++.++++.++|||+|.. +.+ .+..+.++++|+ |+|++++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~-~~----~~~~~~~~~~~vdh~~~-~~s----~~~~~~v~~~~~~~~i~~~~~~~~~-- 68 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE-LR----RRNGIKLIAVHVDHGLR-EES----DEEAEFVEEICEQLGIPLYIVRIDE-- 68 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH-HH----TTTTTEEEEEEEE-STS-CCH----HHHHHHHHHHHHHTT-EEEEEE--C--
T ss_pred CEEEEEcCCHHHHHHHHHHHH-HH----HhcCCCeEEEEEecCCC-ccc----chhHHHHHHHHHhcCCceEEEEeee--
Confidence 799999999999999999987 32 24567999999999985 222 235678999998 99999999874
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
... ...+.|..++.+|+++|.++|+++|+++|++|||+||++|++|+++.
T Consensus 69 --------~~~----------------------~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~ 118 (182)
T PF01171_consen 69 --------DRK----------------------KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLL 118 (182)
T ss_dssp --------HCC----------------------TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHH
T ss_pred --------eec----------------------ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHH
Confidence 000 01134667899999999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHH
Q psy3867 268 LGKGA-HVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAE 334 (521)
Q Consensus 268 ~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~ 334 (521)
+|.|. .+.+.... ....+++++|||..++++||..|++.+++|++.|+|+.. ..+.++++++
T Consensus 119 rg~~~~~l~~~~~~--~~~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN~~---~~~~Rn~iR~ 181 (182)
T PF01171_consen 119 RGSGLRGLAGMPPV--SPFKGIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTNYD---ERYKRNRIRN 181 (182)
T ss_dssp HT--CCCCC-S-SE--EEETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCGGC---TTSHHHHHHH
T ss_pred Hhccchhhcccccc--ccccCcccCCcchhCCHHHHHHHHHHCCCcEEECcCCCC---CcccHHHHhC
Confidence 98773 33333222 113459999999999999999999999999999999874 3456666654
No 4
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-27 Score=243.92 Aligned_cols=242 Identities=24% Similarity=0.250 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHH
Q psy3867 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKAN 165 (521)
Q Consensus 86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~ 165 (521)
||...+..++.+.+++++++ +++|+||||||+||++||++|++ +. +. +++.++|||+|+.. ++. ..
T Consensus 1 ~~~~~~~~~v~~~i~~~~~~--~~~ilVavSGGkDS~~ll~~L~~-l~-----~~-~~~~a~~Vd~~~~~-~~~----~~ 66 (298)
T COG0037 1 CLREKLERKVKRAIREFNLI--EYKILVAVSGGKDSLALLHLLKE-LG-----RR-IEVEAVHVDHGLRG-YSD----QE 66 (298)
T ss_pred ChHHHHHHHHHHHHHhcccc--CCeEEEEeCCChHHHHHHHHHHH-hc-----cC-ceEEEEEecCCCCC-ccc----hH
Confidence 57788999999999999988 89999999999999999999987 31 11 89999999999853 322 34
Q ss_pred HHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 166 NAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 166 l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
.+.++.+++ |+++++.++...+.....+ ..+.|..|+.+|+++|.++|++
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------------------~~~~c~~c~~~R~~~l~~~a~~ 118 (298)
T COG0037 67 AELVEKLCEKLGIPLIVERVTDDLGRETLD----------------------------GKSICAACRRLRRGLLYKIAKE 118 (298)
T ss_pred HHHHHHHHHHhCCceEEEEEEeeccccccC----------------------------CCChhHHHHHHHHHHHHHHHHH
Confidence 567888888 8999999887533210000 1146889999999999999999
Q ss_pred cCCCeEEeccCcchhHHHHHHHHhcCCCCC-CCCCCcCCCCCCCCe-eeeecCCCCCHHHHHHHHHHCCCCceecCCCCC
Q psy3867 244 LNCTKIFTAETQTDLATKIIANISLGKGAH-VPLDVGFSDDRTGDI-ITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLAT 321 (521)
Q Consensus 244 lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~-l~~~~~~~d~~~~~v-~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~ 321 (521)
+|+++|+||||+||.++|+|+++.+|.|.. +....+... .++. .++|||+.++++||..|+...++||..++|++.
T Consensus 119 ~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~--~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~ 196 (298)
T COG0037 119 LGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRP--FEGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYD 196 (298)
T ss_pred cCCCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccc--cCCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCC
Confidence 999999999999999999999999998632 222222211 1223 799999999999999999999999999999853
Q ss_pred CCCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhhhhcCc-----ccccccccc
Q psy3867 322 LADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMN-----VNNTCLLCK 375 (521)
Q Consensus 322 ~~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~~~~~~-----~~~~C~lC~ 375 (521)
..+. +..++..+..++...|++...++++.+.......... ....|..|+
T Consensus 197 ---~~~~-R~~~r~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (298)
T COG0037 197 ---LRYT-RNRIREELLPLEEERPGLKFSLARAFELLRELRLLLEKLSDEKLLRCLACG 251 (298)
T ss_pred ---chhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHhhhhhhhHHHhhhhhcc
Confidence 2333 4456777888888889999999887775554322110 245777776
No 5
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.95 E-value=3.4e-26 Score=244.72 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=167.8
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTC 182 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~ 182 (521)
+.++++|+||+|||+||++|||++.+ +.. ...++++.++|||||.+ +.+ .+..+.++++|+ |+|+++++
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~-~~~---~~~~~~l~a~hvnhglr-~~s----~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQ-WRT---ENPGVTLRAIHVHHGLS-PNA----DSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHH-HHH---hcCCCeEEEEEEeCCCC-cch----HHHHHHHHHHHHHcCCcEEEEE
Confidence 56789999999999999999999976 321 23578999999999985 332 234577899998 99999988
Q ss_pred cccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHH
Q psy3867 183 LEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKI 262 (521)
Q Consensus 183 l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~ 262 (521)
++... .+ .+.|...+..|+.++.+.++.. ++|++|||.||+++|+
T Consensus 83 ~~~~~-----------~~----------------------~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~ 127 (436)
T PRK10660 83 VQLDQ-----------RG----------------------LGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETF 127 (436)
T ss_pred EeccC-----------CC----------------------CCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHH
Confidence 76210 00 1235667888999998888874 5899999999999999
Q ss_pred HHHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHHHH
Q psy3867 263 IANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQ 341 (521)
Q Consensus 263 L~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~Le 341 (521)
|+++.+|.|. .++++.... ..+++.++|||.+++++||..|++.++|+|+.++|+.. ..+.+|+++++.++.|+
T Consensus 128 L~~L~rG~g~~gL~gm~~~~--~~~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~---~~~~RN~iR~~vlP~L~ 202 (436)
T PRK10660 128 LLALKRGSGPAGLSAMAEVS--PFAGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQD---DRYDRNFLRLRVLPLLQ 202 (436)
T ss_pred HHHHHcCCChhhccccceec--ccCCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCC---CccccHHHHHHhhHHHH
Confidence 9999999872 343332221 12467899999999999999999999999999999863 45788999999999999
Q ss_pred HHCCCHHHHHHHHHHHhhhh
Q psy3867 342 TNFPSTVSTVFRTADKLSLD 361 (521)
Q Consensus 342 ~~~Pstv~tV~rT~~KL~~~ 361 (521)
+.+|+...++.|++..+...
T Consensus 203 ~~~p~~~~~l~r~a~~~~~~ 222 (436)
T PRK10660 203 QRWPHFAEATARSAALCAEQ 222 (436)
T ss_pred HhChHHHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 6
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.93 E-value=4.8e-25 Score=210.22 Aligned_cols=184 Identities=20% Similarity=0.155 Sum_probs=140.4
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
+|+||+|||+||++||+++.+... +.++++.++|||+|... . ..+..+.++++++ |+|+++++++...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~-----~~~~~v~~v~vd~g~~~-~----~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQP-----KLKIRLIAAHVDHGLRP-E----SDEEAEFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH-----HcCCCEEEEEeCCCCCh-h----HHHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 589999999999999999987432 24678999999999732 1 1235677888888 9999999886311
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
... ...++.+..|+.+|+..|.++|+++|+++|++||+++|+++++|++++
T Consensus 71 -------~~~----------------------~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~ 121 (189)
T TIGR02432 71 -------LAK----------------------GKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLL 121 (189)
T ss_pred -------hcc----------------------ccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHH
Confidence 000 001235678999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHH
Q psy3867 268 LGKGA-HVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESF 336 (521)
Q Consensus 268 ~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~f 336 (521)
+|.|. .++++.... ...+++.++|||++++++||+.|++.++||++.++|++.. .+.+++++++.
T Consensus 122 ~g~~~~~l~~~~~~~-~~~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~---~~~R~~~r~~~ 187 (189)
T TIGR02432 122 RGSGLRGLSGMKPIR-ILGNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDD---KYLRNRIRHEL 187 (189)
T ss_pred cCCCcccccCCcccc-ccCCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCC---cccHHHHHHHh
Confidence 98762 233322211 1123789999999999999999999999999999998743 34555555543
No 7
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.93 E-value=7.1e-25 Score=207.48 Aligned_cols=178 Identities=23% Similarity=0.238 Sum_probs=136.7
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
||+|++|||+||++||+++.+.... .+.++++.++|||+|... .+. ++.+.++++++ |++++++++++.|
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~---~~~~~~~~~~~~d~~~~~-~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRR---YPYGFELEALTVDEGIPG-YRD----ESLEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhh---cCCCeEEEEEEEECCCCC-CcH----HHHHHHHHHHHHcCCceEEEehhhhc
Confidence 5899999999999999999873321 123689999999999742 222 24567888887 9999999987543
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
... .... .....++|.+|+.+|+..+.++|+++|+++|++|||+||+++++|+++.
T Consensus 73 ~~~--~~~~----------------------~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~ 128 (185)
T cd01993 73 TDD--IEVK----------------------KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLL 128 (185)
T ss_pred chh--hhhh----------------------ccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHH
Confidence 100 0000 0112346788999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcCC--CCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCC
Q psy3867 268 LGKGAHVPLDVGFS--DDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLAT 321 (521)
Q Consensus 268 ~GrG~~l~~~~~~~--d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~ 321 (521)
+|+|... ..+.. ....+++.++|||++++++||+.|++.+|||++.++||+.
T Consensus 129 ~g~~~~~--~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~~~ 182 (185)
T cd01993 129 RGGILRL--MRPGPILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYA 182 (185)
T ss_pred hcCHHHH--cCCCCccccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCCCC
Confidence 9987322 12221 1234568999999999999999999999999999999974
No 8
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.92 E-value=3.8e-24 Score=202.94 Aligned_cols=182 Identities=24% Similarity=0.247 Sum_probs=139.3
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
||+||+|||+||++|++++.+... +.++++.++|||+|... . ..++.+.++++++ |++++++... +
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~-----~~~~~v~~v~id~~~~~-~----~~~~~~~~~~~~~~~~i~~~~~~~~--~ 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKP-----RLGLRLVAVHVDHGLRP-E----SDEEAAFVADLCAKLGIPLYILVVA--L 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH-----HcCCcEEEEEecCCCCc-h----HHHHHHHHHHHHHHcCCcEEEEeec--c
Confidence 689999999999999999987332 13678999999999632 1 1235677888887 9999988211 0
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
... ...+.++.|+.+|+++|.++|+++|+++|++||+++|+++++++++.
T Consensus 69 --------~~~----------------------~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~ 118 (185)
T cd01992 69 --------APK----------------------PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLL 118 (185)
T ss_pred --------ccC----------------------CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHH
Confidence 000 01135677899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHH
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFV 337 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI 337 (521)
+|+|......... ....+.+.++|||++++++||..|++.+|||++.++|+.. ....++++.++++
T Consensus 119 ~g~~~~~l~~~~~-~~~~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~---~~~~r~~~r~~~~ 184 (185)
T cd01992 119 RGSGLRGLAGMPA-RIPFGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNED---PRYTRNRIRHELL 184 (185)
T ss_pred ccCCcccccCCCc-ccCCCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCC---CcccHHHHHHhhC
Confidence 9987432111111 1224568999999999999999999999999999998864 3456667666654
No 9
>KOG2840|consensus
Probab=99.90 E-value=1e-23 Score=209.76 Aligned_cols=286 Identities=16% Similarity=0.226 Sum_probs=221.1
Q ss_pred ccccCCCCceEEec-CCcccchHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce
Q psy3867 64 CPRCNTNNGEVVLR-LKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF 142 (521)
Q Consensus 64 C~kCk~~~a~i~~r-~~~~~Cr~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f 142 (521)
|.-|....|.|.-. .+...|+.||...++..|-.++=+++++.+|++|.++-|||+||+++++.+.. |.++ +.+|.
T Consensus 6 ~~~~~~~~~~i~rp~~~q~~c~~cf~~~fe~e~~~ti~~n~l~~rge~v~igasGgkdstvlA~v~~~-Ln~r--~~~g~ 82 (347)
T KOG2840|consen 6 EALCAVAKPTIRRPKQGQKLCGACFWEGFEAEIHPTIVANKLFARGERVAIGASGGKDSTVLAYVLDA-LNER--HDYGL 82 (347)
T ss_pred ccccccccchhcCcchhhHHHhhhhhhcchhhhhhhHhccCccCCCCccccccccchhHHHHHHHHHH-hhhh--cCCCc
Confidence 33343334445433 46899999999999999999999999999999999999999999999999864 6532 34678
Q ss_pred eEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccC-CchhhhhhcccCCchhhhchhhhhhhhhhcc
Q psy3867 143 SVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALE-PDNMKLYTDVAELPLEQFAKDSEINKMFQTV 219 (521)
Q Consensus 143 ~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~ 219 (521)
++.++.+|+|.. ++-. ..+..++.... |+|+.|+++.++|+ +..+...... ..+
T Consensus 83 ~l~Lls~degi~-gyrd----~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~i~~~i-----------------~~~- 139 (347)
T KOG2840|consen 83 RLFLLSIDEGIR-GYRD----DSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDEIVSEI-----------------GQE- 139 (347)
T ss_pred eeeeeecccccc-ceec----cHHHHHHHhhhhcCCceEEecHHHHhccchHHHHHHHH-----------------hhh-
Confidence 999999999974 5532 23333444433 99999999999886 4443332211 100
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCC--CCCCeeeeecCCCC
Q psy3867 220 TTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDD--RTGDIITLRPLRDF 297 (521)
Q Consensus 220 ~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~--~~~~v~iiRPLrd~ 297 (521)
..+-|.+|..+|++.|.+-|..+|+..+.|||++||.|+++|+|+.+|....+...+.+... ..+.+...+||++.
T Consensus 140 --~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~ 217 (347)
T KOG2840|consen 140 --IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYA 217 (347)
T ss_pred --hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCccccCccccccccccc
Confidence 11346788999999999999999999999999999999999999999876555554444322 23358889999999
Q ss_pred CHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhhhhcCc-cccccccccc
Q psy3867 298 SSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMN-VNNTCLLCKA 376 (521)
Q Consensus 298 ~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~~~~~~-~~~~C~lC~~ 376 (521)
.++||..|+.+..+.++...|.+. +..+ +...+.+|..|+..+|+.+-.+.|.++.+......+. .+..|..|+.
T Consensus 218 ~~keivLya~~~~L~yFs~eCv~a---p~a~-rg~~r~~lk~le~~~P~~lmd~~rs~e~~~~~~~~~~p~~g~C~~C~~ 293 (347)
T KOG2840|consen 218 SEKEIVLYASLSKLRYFSTECVKA---PGAS-RGDARILLKDLERERPRILMDYCRSGEFLEFKDIAGAPTPGTCSRCGF 293 (347)
T ss_pred hhhehhhHHHHHHHHHHHHhhccC---Ccch-HHHHHHHhhhhhhhCchHHHHHHhhhHHHhhhHhhcCCCCcchhhhHH
Confidence 999999999999999999988863 2333 4567889999999999999999999999987654433 6788999987
Q ss_pred ccCCC
Q psy3867 377 PLDTR 381 (521)
Q Consensus 377 ~ld~~ 381 (521)
.....
T Consensus 294 iss~~ 298 (347)
T KOG2840|consen 294 ISSQK 298 (347)
T ss_pred Hhcch
Confidence 66555
No 10
>PRK08349 hypothetical protein; Validated
Probab=99.84 E-value=1.5e-19 Score=174.15 Aligned_cols=186 Identities=11% Similarity=0.084 Sum_probs=129.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCE---EEEEcc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDS---YFTCLE 184 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~---~iv~l~ 184 (521)
|+++++|||+||+++|+++.+ .++++.++|||++. .+.+...+.++.+.+ |+++ +++++.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~---------~g~~v~av~~d~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR---------RGVEVYPVHFRQDE------KKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH---------cCCeEEEEEEeCCH------HHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 789999999999999999865 48899999999842 112222222333333 6775 455543
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~ 264 (521)
++... .+ ..+.. ......+|.+|+.+++.++..+|+++|+++|++|||.+|.+.+.+.
T Consensus 67 ~~~~~----~~-----------------~~~~~-~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~ 124 (198)
T PRK08349 67 EEQGP----VF-----------------EKLRE-LKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLD 124 (198)
T ss_pred HHhHH----HH-----------------HHHHh-hCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHH
Confidence 21110 00 00000 0012257889999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce----ecCCCCCC-CCChhHHHHHHHHHHHH
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV----HVPSLATL-ADPLASLQKAAESFVTD 339 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~----~~~~~~~~-~~~~~Si~~l~~~fI~~ 339 (521)
|+..+.. ..++.++|||..++++||+.|++..|++.. ...|++.. .+.........++|+..
T Consensus 125 nl~~~~~-------------~~~i~i~rPL~~~~K~eI~~~a~~~g~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 191 (198)
T PRK08349 125 NLMVIST-------------ATDLPVLRPLIGLDKEEIVKIAKEIGTFEISIEPEPPCPFVPKYPVVRASLGEFEKILEE 191 (198)
T ss_pred HHhcccc-------------ccCCeEEcCCCCCCHHHHHHHHHHcCChhhhhCCCCCCcCCCCCCcCCCCHHHHHHHHHH
Confidence 9865321 124789999999999999999999996544 33576421 12233455667889999
Q ss_pred HHHHCC
Q psy3867 340 LQTNFP 345 (521)
Q Consensus 340 Le~~~P 345 (521)
|+..-|
T Consensus 192 ~~~~~~ 197 (198)
T PRK08349 192 VYVLGP 197 (198)
T ss_pred HhccCC
Confidence 987655
No 11
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=99.83 E-value=6.3e-21 Score=165.97 Aligned_cols=101 Identities=45% Similarity=0.681 Sum_probs=90.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcCCCCC-CCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCC-----CCCCChhHHHH
Q psy3867 258 LATKIIANISLGKGAHVPLDVGFSDDR-TGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA-----TLADPLASLQK 331 (521)
Q Consensus 258 lA~~~L~nl~~GrG~~l~~~~~~~d~~-~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~-----~~~~~~~Si~~ 331 (521)
+|.++|+++++|||.++++++++.+.+ .+++.++|||||+.++||..|+++.+++.+..+... ...+++.||++
T Consensus 1 LA~~~Ls~~~kGRG~sl~~~~~~~~~~~~~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~~ 80 (107)
T PF10288_consen 1 LAIKTLSNVAKGRGFSLPWQVSDGDSRNGWDIKIIRPLRDLLKKEIAFYNRLCGLESVLVPSLDTDSSQSKSSKNMSINE 80 (107)
T ss_pred CHHHHHHHHHcCCceecchHHhCCcccCCCCceEEeehHhCCHHHHHHHHHHhCcchhhcccccccccccccCcCCCHHH
Confidence 588999999999999999999998887 678999999999999999999999999866544332 24567889999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh
Q psy3867 332 AAESFVTDLQTNFPSTVSTVFRTADKL 358 (521)
Q Consensus 332 l~~~fI~~Le~~~Pstv~tV~rT~~KL 358 (521)
++++||..||++||+|++||+||++||
T Consensus 81 L~~~fi~~Le~~ypstvsTV~RT~~KL 107 (107)
T PF10288_consen 81 LTEDFIDNLEENYPSTVSTVVRTADKL 107 (107)
T ss_pred HHHHHHHHHhCcCcchHhHHHHHhhcC
Confidence 999999999999999999999999997
No 12
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.83 E-value=3.1e-20 Score=193.35 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=141.0
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCcc---ChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQV---SISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~---s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
+|+||+|||+||+++|++|++ .++++.++|++.+...+. ......++++.++++|+ |+|++++++.
T Consensus 2 kVlValSGGvDSsvla~lL~~---------~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~ 72 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKE---------QGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFE 72 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHH---------cCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCH
Confidence 799999999999999999975 478899999998642100 00011235677889988 9999999997
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHH-HHHHHHHHHHHhcCCCeEEeccCcchhHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQT-LRQNLLLQAAKKLNCTKIFTAETQTDLATKII 263 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~-lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L 263 (521)
+.|.....+.+. ..... -.+ -++|.+|.+ +|+.+|.++|+++|+++|+|||+++|.+++
T Consensus 73 ~~f~~~vi~~~~----------------~~~~~-g~t-pnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~-- 132 (346)
T PRK00143 73 KEFWDRVIDYFL----------------DEYKA-GRT-PNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR-- 132 (346)
T ss_pred HHHHHHHHHHHH----------------HHHHc-CCC-CCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc--
Confidence 654321110000 00000 001 146888876 789999999999999999999999999876
Q ss_pred HHHhcCCCCCCCCCCcCCC---CCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCC-CCCChhHHHHHHHHHHHH
Q psy3867 264 ANISLGKGAHVPLDVGFSD---DRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLAT-LADPLASLQKAAESFVTD 339 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d---~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~-~~~~~~Si~~l~~~fI~~ 339 (521)
++.+|.+ ...+..+.- .......++|||.+++|+||+.||+.++||+...+++.. ....+ .-.++||..
T Consensus 133 -~L~rg~d--~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~----~~~~~fl~~ 205 (346)
T PRK00143 133 -ELLRGVD--PNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGE----RDYRDFLKR 205 (346)
T ss_pred -eEEEccC--CCcChhhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCc----hhHHHHHHH
Confidence 7777744 222211100 111123689999999999999999999999988777642 11122 235778888
Q ss_pred HHHHCCCHHHH
Q psy3867 340 LQTNFPSTVST 350 (521)
Q Consensus 340 Le~~~Pstv~t 350 (521)
+....|+.+.+
T Consensus 206 ~~~~~pG~~~~ 216 (346)
T PRK00143 206 YLPAQPGEIVD 216 (346)
T ss_pred hcccCCCCEEc
Confidence 87778887654
No 13
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.82 E-value=7.9e-20 Score=185.76 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=117.9
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQA 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~ev 186 (521)
||+||||||+||++||+++++. +|.++.++|||+|.... .+.+.++++++ |+ ++++++.++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~--------lG~~v~aV~vd~g~~~~-------~E~~~~~~~~~~~g~i~~~vvd~~e~ 65 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA--------IGDRLTCVFVDNGLLRK-------NEAERVEELFSKLLGINLIVVDASER 65 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH--------hCCcEEEEEecCCCCCh-------HHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 6899999999999999999863 35689999999997421 23566888886 65 9999988753
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcC-CCeEEeccCcchhHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLN-CTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg-~~~V~tGh~~dDlA~~~L~n 265 (521)
|-. .. .+ +.+...++.+|...++.++.++|+++| +++|++|||++|++++...+
T Consensus 66 fl~----~l---~~------------------v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~ 120 (295)
T cd01997 66 FLS----AL---KG------------------VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGK 120 (295)
T ss_pred HHH----Hh---cC------------------CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccc
Confidence 211 00 00 111224667888899999999999999 99999999999999986543
Q ss_pred HhcCCCCCCCCCCcCCCC-CCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 266 ISLGKGAHVPLDVGFSDD-RTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~-~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.. +..+..+.++... ...+..+++||++++|+||+.|++.+|||.
T Consensus 121 ~~---~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~ 166 (295)
T cd01997 121 GS---ADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVRELGRELGLPE 166 (295)
T ss_pred cc---cccccccccccccchHhhCCcccccccCcHHHHHHHHHHcCCCc
Confidence 32 2222222221111 123577999999999999999999999997
No 14
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.81 E-value=4e-19 Score=182.11 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
|.+....++++.++ +++|+||||||+||++||+++++. +|.++.++|||+|... .. +.
T Consensus 2 ~~~~~~~~l~~~v~-------~~kVvValSGGVDSsvla~ll~~~--------~G~~v~av~vd~G~~~---~~----E~ 59 (311)
T TIGR00884 2 FIEEAVEEIREQVG-------DAKVIIALSGGVDSSVAAVLAHRA--------IGDRLTCVFVDHGLLR---KG----EA 59 (311)
T ss_pred hHHHHHHHHHHHhC-------CCcEEEEecCChHHHHHHHHHHHH--------hCCCEEEEEEeCCCCC---hH----HH
Confidence 44555556666553 268999999999999999999763 3678999999999742 11 23
Q ss_pred HHHHHH-h-c-cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 167 AQIATA-M-K-YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 167 ~~v~~~-~-e-g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
+.+.+. + + |++++++++.+.|-.. . .+ +.+...++.+|...+++++.++|++
T Consensus 60 e~~~~~~~~~lgi~~~vvd~~e~fl~~----l---~~------------------v~~p~~~r~~~~~~~~~~~~~~A~~ 114 (311)
T TIGR00884 60 EQVVKTFGDRLGLNLVYVDAKERFLSA----L---KG------------------VTDPEEKRKIIGRVFIEVFEREAKK 114 (311)
T ss_pred HHHHHHHHHHcCCcEEEEeCcHHHHhh----h---cC------------------CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4 3 9999999998643110 0 00 1111235567877888999999999
Q ss_pred cC-CCeEEeccCcchhHHHHHHHHhcCCCCCCC---CCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 244 LN-CTKIFTAETQTDLATKIIANISLGKGAHVP---LDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 244 lg-~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~---~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
+| +++|++||+++|++++.+ |....+. ...++. ......+++||++++|+||+.|++.+|||+
T Consensus 115 ~g~~~~la~Gt~~dD~~Es~~-----G~~~~iks~~~~~gl~--~~~~~~ii~PL~~l~K~EVr~la~~lgLp~ 181 (311)
T TIGR00884 115 IGDAEYLAQGTIYPDVIESAA-----GTAHVIKSHHNVGGLP--EDMKLKLVEPLRELFKDEVRKLGKELGLPE 181 (311)
T ss_pred CCCCCEEEECCCChhhhhhcc-----ChhHhhhccCccccCC--hhhcCceEEEcccCcHHHHHHHHHHcCCCH
Confidence 99 999999999999998764 3211121 111221 123467999999999999999999999994
No 15
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.80 E-value=5e-19 Score=193.02 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=127.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH-Hhc--cCCEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT-AMK--YFDSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~-~~e--g~p~~iv~l~ 184 (521)
+++|+||||||+||+++|+++++. ++.++.++|||+|... .. +.+.+.+ +++ |+++++++++
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~--------lg~~v~av~vd~g~~~---~~----e~~~~~~~~a~~lgi~~~vvd~~ 279 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA--------IGDQLTCVFVDHGLLR---KN----EAEQVMEMFREHFGLNLIHVDAS 279 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH--------hCCceEEEEEeCCCCC---HH----HHHHHHHHHHHHcCCcEEEEccH
Confidence 379999999999999999999863 3678999999999732 11 2344554 445 9999999988
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc-CCCeEEeccCcchhHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL-NCTKIFTAETQTDLATKII 263 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l-g~~~V~tGh~~dDlA~~~L 263 (521)
+.|... ..+. .+...++.+|....+.+|.++|+++ |+++|++|||++|++++.+
T Consensus 280 ~~f~~~-------l~g~------------------~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~ 334 (511)
T PRK00074 280 DRFLSA-------LAGV------------------TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGG 334 (511)
T ss_pred HHHHHh-------ccCC------------------CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcC
Confidence 543110 0011 1112356677777789999999999 9999999999999999876
Q ss_pred HHHhcCCCCCCCCCCcCCCC-CCCCeeeeecCCCCCHHHHHHHHHHCCCCce---ecCCCCCCCCChhHHHHHHHHHHHH
Q psy3867 264 ANISLGKGAHVPLDVGFSDD-RTGDIITLRPLRDFSSKEVIYYNIFNDLSPV---HVPSLATLADPLASLQKAAESFVTD 339 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~-~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~---~~~~~~~~~~~~~Si~~l~~~fI~~ 339 (521)
++ ++..+..+.++..- ......++|||++++|+||+.|++.+|||+. ..||+......+. +..++++-+..
T Consensus 335 ~~----~~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p~~~la~Ri-~g~it~e~l~~ 409 (511)
T PRK00074 335 TK----KAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAIRI-LGEVTKEKLDI 409 (511)
T ss_pred CC----CccccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCCCCceeeEE-ecccCHHHHHH
Confidence 54 23333322221111 1123569999999999999999999999953 3365543222222 22344444444
Q ss_pred HHH
Q psy3867 340 LQT 342 (521)
Q Consensus 340 Le~ 342 (521)
+++
T Consensus 410 ~~~ 412 (511)
T PRK00074 410 LRE 412 (511)
T ss_pred HHH
Confidence 443
No 16
>PRK00919 GMP synthase subunit B; Validated
Probab=99.79 E-value=3.4e-18 Score=174.38 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=115.9
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhcc-CCEEEEEccccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKY-FDSYFTCLEQAL 187 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~eg-~p~~iv~l~evf 187 (521)
++|+||||||+||+++|+++++. +|+++.++|||+|... . .+.+.++++++. ++++++++++.|
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~--------lG~~v~aV~vD~G~~~---~----~E~e~a~~~~~~~i~~~vvd~~e~f 86 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA--------IGDRLTPVFVDTGLMR---K----GETERIKETFSDMLNLRIVDAKDRF 86 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH--------hCCeEEEEEEECCCCC---H----HHHHHHHHHHhccCCcEEEECCHHH
Confidence 68999999999999999999763 4789999999999742 1 245667777763 888998887533
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
- ....+ +.+...++.+|...++.++.++|+++|+++|++|||.+|+.+.
T Consensus 87 l-------~~L~~------------------v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~------ 135 (307)
T PRK00919 87 L-------DALKG------------------VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES------ 135 (307)
T ss_pred H-------HhccC------------------CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhc------
Confidence 1 00001 1111235678888899999999999999999999999998775
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+|.-.+.....++. . ..++.+++||++++|+||+.|++.+|||..
T Consensus 136 r~~iks~~nv~gl~-~-~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~ 180 (307)
T PRK00919 136 EGGIKSHHNVGGLP-E-GMVLKIVEPLRDLYKDEVREVARALGLPEE 180 (307)
T ss_pred cCcccccccccccC-h-hhcCCcccCchhCcHHHHHHHHHHcCCChh
Confidence 22111111222221 1 234679999999999999999999999976
No 17
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.77 E-value=1.6e-17 Score=157.08 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=113.3
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCE--EEEEccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDS--YFTCLEQ 185 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~--~iv~l~e 185 (521)
+|+|+||||+||+++++++++ .|+++.++|||+|... . .+.. .....+.+... +.++ .++++..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~---------~g~~v~av~~d~g~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK---------RGIEVDALHFNSGPFT-S-EKAR-EKVEDLARKLARYSPGHKLVVIIFTF 68 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH---------cCCeEEEEEEeCCCCC-c-hHHH-HHHHHHHHHHHHhCCCCceEEEeCcH
Confidence 589999999999999999976 4789999999999742 1 1111 12222333322 4444 4555432
Q ss_pred -ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHH
Q psy3867 186 -ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 186 -vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~ 264 (521)
+.. +.+.. ...-++|..|+.+++..+.++|+++|+++|++|||.+|.+.+.+.
T Consensus 69 ~~~~----~~~~~----------------------~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~ 122 (177)
T cd01712 69 FVQK----EIYGY----------------------GKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLE 122 (177)
T ss_pred HHHH----HHHHh----------------------CCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHH
Confidence 100 11110 112257899999999999999999999999999999999998888
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
++..+. ...++.++|||.+++|+||+.|++..|++.+..
T Consensus 123 ~l~~~~-------------~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 123 NLLVIS-------------SGTDLPILRPLIGFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred hhhhcc-------------cCCCCeEECCCCCCCHHHHHHHHHHcCCcceec
Confidence 875431 123588999999999999999999999997754
No 18
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.75 E-value=2.6e-18 Score=165.65 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=112.9
Q ss_pred EEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccC
Q psy3867 111 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALE 188 (521)
Q Consensus 111 VLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~ 188 (521)
|+|++|||+||+++|+++++.. +.++.++|||+|.. +. ++.+.++++++ |+++++++++....
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~--------~~~v~~v~vd~g~~---~~----~~~~~~~~~a~~lgi~~~~~~~~~~~~ 65 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL--------GDRVLAVTATSPLF---PR----RELEEAKRLAKEIGIRHEVIETDELDD 65 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh--------CCcEEEEEeCCCCC---CH----HHHHHHHHHHHHcCCcEEEEeCCcccc
Confidence 6899999999999999997621 23789999999863 11 25677888888 99999999874221
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhc
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISL 268 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~ 268 (521)
. .+.. ....++..|+.+++..+.++|+++|+++|++||+.+|.++..
T Consensus 66 ~----~~~~-----------------------~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~------ 112 (202)
T cd01990 66 P----EFAK-----------------------NPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR------ 112 (202)
T ss_pred H----HHhc-----------------------CCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC------
Confidence 0 0100 011245678999999999999999999999999999987621
Q ss_pred CCCCCCCCCCcCCCCCCCCeeeeecCC--CCCHHHHHHHHHHCCCCceecCCCC
Q psy3867 269 GKGAHVPLDVGFSDDRTGDIITLRPLR--DFSSKEVIYYNIFNDLSPVHVPSLA 320 (521)
Q Consensus 269 GrG~~l~~~~~~~d~~~~~v~iiRPLr--d~~kkEI~~Ya~~~~L~~~~~~~~~ 320 (521)
+ ++.. ..++.++|||. .++++||..|++..|+|++.+++..
T Consensus 113 ------~---~~~~--~~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~~ 155 (202)
T cd01990 113 ------P---GLKA--LRELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMA 155 (202)
T ss_pred ------h---HHHH--HHHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCcc
Confidence 1 1110 11256899999 5999999999999999997766543
No 19
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.73 E-value=1.4e-17 Score=173.77 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=121.5
Q ss_pred CCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEE
Q psy3867 104 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFT 181 (521)
Q Consensus 104 li~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv 181 (521)
|++++++|+||+|||+||+++|++|++ .++++.++|++.+.. ..+ .+.++.++++|+ |+|++++
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~---------~G~~V~~v~~~~~~~-~~~----~~d~~~a~~va~~LgIp~~vv 66 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLE---------AGYEVTGVTFRFYEF-NGS----TEYLEDARALAERLGIGHITY 66 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHH---------cCCeEEEEEEecCCC-CCC----hHHHHHHHHHHHHhCCCEEEE
Confidence 577889999999999999999999975 478999999997532 111 124677889998 9999999
Q ss_pred EcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHH-HHHHHHHHHHHhcCCCeEEeccCcchhHH
Q psy3867 182 CLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQT-LRQNLLLQAAKKLNCTKIFTAETQTDLAT 260 (521)
Q Consensus 182 ~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~-lR~~lL~~~A~~lg~~~V~tGh~~dDlA~ 260 (521)
++.+.|.....+.+... +.. ....++|.+|++ +|+.+|.++|+++|+++|+|||++.....
T Consensus 67 d~~~~f~~~v~~~f~~~-------y~~-----------g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~ 128 (360)
T PRK14665 67 DARKVFRKQIIDYFIDE-------YMS-----------GHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWI 128 (360)
T ss_pred ecHHHHHHHHHhhhhhH-------Hhc-----------cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceecc
Confidence 99865532111100000 000 011268999977 67899999999999999999999875433
Q ss_pred HHHHHHhcCCCCCCCCCCcC-CCCCCCC--eeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 261 KIIANISLGKGAHVPLDVGF-SDDRTGD--IITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 261 ~~L~nl~~GrG~~l~~~~~~-~d~~~~~--v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
.-+..+.+| .....+.+| ......+ -+++|||.+++|+||+.+|+..|++.+
T Consensus 129 ~~~~~l~~g--~D~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~ 183 (360)
T PRK14665 129 DGNYYITPA--EDVDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFEKV 183 (360)
T ss_pred CCcEEEEee--cCCCCCceEEecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCCcc
Confidence 322223333 223333332 1111111 257999999999999999999998543
No 20
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.73 E-value=1.3e-17 Score=173.95 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=131.9
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCcc-ChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQV-SISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~-s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
+|+||+|||+||+++|++|++ .++++.++|++.+..... ......++++.++++|+ |+|++++++.+.
T Consensus 1 kVlValSGGvDSsvla~lL~~---------~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~ 71 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE---------QGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKE 71 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH---------cCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHH
Confidence 589999999999999999975 478899999997642000 00011235678889988 999999999864
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHH-HHHHHHHHHHHhcCCCeEEeccCcchhHHH-HHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQT-LRQNLLLQAAKKLNCTKIFTAETQTDLATK-IIA 264 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~-lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~-~L~ 264 (521)
|.....+.+. ...... ..-++|.+|.+ +|+..|.++|+++|+++|+|||+++|..++ ...
T Consensus 72 f~~~v~~~~i----------------~~~~~g--~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~ 133 (349)
T cd01998 72 YWEKVFEPFL----------------EEYKKG--RTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRY 133 (349)
T ss_pred HHHHHHHHHH----------------HHHHcC--CCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCce
Confidence 4221110000 000000 01147888966 689999999999999999999999997765 444
Q ss_pred HHhcCCCCCCCCCCcC-CC--CCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCC--CCCCChhHHHHHHHHHHHH
Q psy3867 265 NISLGKGAHVPLDVGF-SD--DRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA--TLADPLASLQKAAESFVTD 339 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~-~d--~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~--~~~~~~~Si~~l~~~fI~~ 339 (521)
.+.+|.+ ...+..+ .. .......++|||.+++|+||+.||+.+||+....+... +..+++ . .++||..
T Consensus 134 ~l~rg~d--~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~iCFi~~~-~----~~~fl~~ 206 (349)
T cd01998 134 RLLRGVD--PNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFIGER-N----FRDFLKE 206 (349)
T ss_pred EEeecCC--CCCCcceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEecCC-C----HHHHHHH
Confidence 4444432 2222221 00 01112578999999999999999999999966543221 122222 2 3566665
Q ss_pred HHHHCCCHHH
Q psy3867 340 LQTNFPSTVS 349 (521)
Q Consensus 340 Le~~~Pstv~ 349 (521)
.....|+-+.
T Consensus 207 ~~~~~~G~i~ 216 (349)
T cd01998 207 YLPEKPGEIV 216 (349)
T ss_pred hcCCCCCCEE
Confidence 4444566543
No 21
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.72 E-value=3.1e-17 Score=163.90 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=112.7
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
..++|+||||||+||+++|+++++ .++++.++|+|++.. +. ++.+.++++++ |+++++++++
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~---------~g~~v~av~~~~~~~---~~----~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSD---------AGTEVLAITVVSPSI---SP----RELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHH---------hCCCEEEEEecCCCC---CH----HHHHHHHHHHHHcCCCEEEEEcH
Confidence 356899999999999999999975 267899999998642 21 24566788887 9999999987
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~ 264 (521)
++.. .+. .+...+|.+|+..++..+.++|+++|+++|++|||+||+++.
T Consensus 75 ~~~~-----~~~-----------------------~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~--- 123 (252)
T TIGR00268 75 KMIN-----PFR-----------------------ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDH--- 123 (252)
T ss_pred HHHH-----HHH-----------------------hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccc---
Confidence 4210 011 012246888999999999999999999999999999998652
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCceecCC
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVHVPS 318 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~~~~ 318 (521)
| ++..+. . ...+++||.+ ++|+||+.|++.+|||++..|+
T Consensus 124 -----r----pg~~a~----~-~~~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps 165 (252)
T TIGR00268 124 -----R----PGYRAV----K-EFNGVSPWAEFGITKKEIREIAKSLGISFPDKPS 165 (252)
T ss_pred -----c----HHHHHH----H-HcCCCCcchhcCCCHHHHHHHHHHcCCCccCCCC
Confidence 1 110111 0 1224599986 7999999999999999886553
No 22
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.70 E-value=2e-16 Score=165.87 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=112.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--c-------CCE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--Y-------FDS 178 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g-------~p~ 178 (521)
+.|+++++|||+||+|++|++.+ .|+++.++|++.|. ...+.++++++ + +++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~k---------rG~~V~~v~f~~g~----------~~~e~v~~la~~L~~~~~~~~i~l 240 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMK---------RGVEVIPVHIYMGE----------KTLEKVRKIWNQLKKYHYGGKAEL 240 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH---------cCCeEEEEEEEeCH----------HHHHHHHHHHHHhcccccCCcceE
Confidence 46999999999999999999976 59999999999772 12344555554 3 556
Q ss_pred EEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchh
Q psy3867 179 YFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDL 258 (521)
Q Consensus 179 ~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDl 258 (521)
++++..+. ..+. ..+........+|.+|++++++++.++|+++|+++|+|||++++.
T Consensus 241 ~~v~~~~~------~~v~-----------------~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 241 IVVKPQER------ERII-----------------QKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred EEEChHHH------HHHH-----------------HHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 66665420 0000 000001111246999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCC-CC
Q psy3867 259 ATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFND-LS 312 (521)
Q Consensus 259 A~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~-L~ 312 (521)
|.++|.|+.. + ....++.++|||..+.+.||..||+..| ++
T Consensus 298 aSQtl~Nl~~-----i--------~~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~ 339 (381)
T PRK08384 298 ASQTLENMYI-----V--------SQASDLPIYRPLIGMDKEEIVAIAKTIGTFE 339 (381)
T ss_pred HHHHHHHHHH-----H--------hccCCCcEEeeCCCCCHHHHHHHHHHcCCcc
Confidence 9999998843 1 1123467999999999999999999999 55
No 23
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.70 E-value=4.3e-16 Score=158.85 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
...+.+|.++..+ ++++|+||||+||+||||++.+.+. ..++.+.++|||.|.. + + ++++++
T Consensus 15 esi~iLrea~~~f------~~~vv~~SGGKDS~VLL~La~ka~~-----~~~~~~~vl~iDTG~~--F-p----Et~ef~ 76 (301)
T PRK05253 15 ESIHILREVAAEF------ENPVMLYSIGKDSSVMLHLARKAFY-----PGKLPFPLLHVDTGWK--F-P----EMIEFR 76 (301)
T ss_pred HHHHHHHHHHHhC------CCEEEEecCCHHHHHHHHHHHHhhc-----ccCCCeeEEEEeCCCC--C-H----HHHHHH
Confidence 3445566666553 5799999999999999999987542 2245677899999962 3 1 356777
Q ss_pred HHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q psy3867 170 ATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCT 247 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~ 247 (521)
.++++ |++++++..++.+.. +.. ......+..|..+|...|.++++++|++
T Consensus 77 d~~a~~~gl~l~v~~~~~~i~~----------g~~-----------------~~~~~~~~cC~~lK~~pL~~al~e~g~d 129 (301)
T PRK05253 77 DRRAKELGLELIVHSNPEGIAR----------GIN-----------------PFRHGSAKHTNAMKTEGLKQALEKYGFD 129 (301)
T ss_pred HHHHHHhCCCEEEEeChHHHhc----------CCC-----------------CCCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 78877 999999876632110 110 0011357789999999999999999999
Q ss_pred eEEeccCcchhHHHHHHHHhcCCCCCCCCCCcC----C------CCCCCCeeeeecCCCCCHHHHHHHHHHCCCCcee
Q psy3867 248 KIFTAETQTDLATKIIANISLGKGAHVPLDVGF----S------DDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 248 ~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~----~------d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~ 315 (521)
++++|++.||.+.+.-..+..-|.....|+... . ....+....++||.+|++.||+.|++.++||+..
T Consensus 130 a~~~G~RrDE~~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~p 207 (301)
T PRK05253 130 AAFGGARRDEEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVP 207 (301)
T ss_pred EEEeccccchhhhhccCccccccccccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCc
Confidence 999999999977655333322122222222210 0 0112457789999999999999999999999743
No 24
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.69 E-value=4.6e-17 Score=169.78 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=113.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccCh---HHHHHHHHHHHHHhc--cCCEEEEEc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSI---SERKANNAQIATAMK--YFDSYFTCL 183 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~---~e~~~~l~~v~~~~e--g~p~~iv~l 183 (521)
.+|+||+|||+||+++|++|++ .++++.++|++.......+. ....++++.++++++ |+|++++++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~---------~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ---------QGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---------cCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3799999999999999999976 47899999996432110000 001235677888888 999999999
Q ss_pred ccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHH-HHHHHHHHHHhc-CCCeEEeccCcc---hh
Q psy3867 184 EQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTL-RQNLLLQAAKKL-NCTKIFTAETQT---DL 258 (521)
Q Consensus 184 ~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~l-R~~lL~~~A~~l-g~~~V~tGh~~d---Dl 258 (521)
.+.|.....+.+. ..... ...-++|.+|++. |+..|.++|+++ |+++|+|||+++ |.
T Consensus 72 ~~~f~~~v~~~~~----------------~~y~~--g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~ 133 (352)
T TIGR00420 72 QKEYWNKVFEPFI----------------QEYKE--GRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIE 133 (352)
T ss_pred HHHHHHHHHHHHH----------------HHHHc--CCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCC
Confidence 7644221110000 00000 0012578899665 579999999996 999999999994 43
Q ss_pred HHHHHHHHhcCCC---CCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 259 ATKIIANISLGKG---AHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 259 A~~~L~nl~~GrG---~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
.... +.+|.. ++.-.+..+ ....-..++|||.+++++||+.|++.+||++...
T Consensus 134 ~~~~---l~~~~d~~kDqsy~L~~l--~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k 189 (352)
T TIGR00420 134 GKSL---LLRALDKNKDQSYFLYHL--SHEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEK 189 (352)
T ss_pred CcEE---EEEccCCCcCcceecccC--CHHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCC
Confidence 2222 223321 111111111 1111245899999999999999999999997664
No 25
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.69 E-value=3.9e-17 Score=170.14 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=116.1
Q ss_pred CCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEE
Q psy3867 104 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFT 181 (521)
Q Consensus 104 li~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv 181 (521)
|+.++++|+||+|||+||+++|++|++ .++++.++|++... . +.+.++++|+ |+|++++
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~---------~G~eV~av~~~~~~---~-------e~~~a~~va~~LGI~~~vv 61 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQE---------QGYEIVGVTMRVWG---D-------EPQDARELAARMGIEHYVA 61 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHH---------cCCcEEEEEecCcc---h-------hHHHHHHHHHHhCCCEEEE
Confidence 466788999999999999999998875 47899999998531 1 2345788887 9999999
Q ss_pred EcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCC-ccHHHHHH-HHHHHHHHHHHHhcCCCeEEeccCcchhH
Q psy3867 182 CLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTL-SSRQYLLQ-TLRQNLLLQAAKKLNCTKIFTAETQTDLA 259 (521)
Q Consensus 182 ~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~-Tsre~l~~-~lR~~lL~~~A~~lg~~~V~tGh~~dDlA 259 (521)
++.+.|.......+. ... .... -++|.+|+ .+|+.+|.++|+++|+++|+|||++....
T Consensus 62 d~~~~f~~~v~~~~~----------------~~~---~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~ 122 (362)
T PRK14664 62 DERVPFKDTIVKNFI----------------DEY---RQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE 122 (362)
T ss_pred eChHHHHHHHHHHhH----------------HHH---HcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc
Confidence 998654321100000 000 0011 15788997 46889999999999999999999996533
Q ss_pred HHHHHHHhcCCCCCCCCCCc-CCCCCCCC--eeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 260 TKIIANISLGKGAHVPLDVG-FSDDRTGD--IITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 260 ~~~L~nl~~GrG~~l~~~~~-~~d~~~~~--v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.....++.+|.. ...+.. |...-..+ -++++||.+++|.||+.||+.+||+.
T Consensus 123 ~~~~~~l~~g~D--~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 123 RNGHIYIVAGDD--DKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred CCCeEEEEEcCC--CcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCC
Confidence 222233444432 222222 11111112 25899999999999999999999987
No 26
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.68 E-value=2.7e-16 Score=145.61 Aligned_cols=160 Identities=20% Similarity=0.227 Sum_probs=117.1
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
+|+|++|||+||++||+++.+... +. .++.++|+|+|.. . + ++.+.++++++ |++++++.....+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-----~~-~~~~~v~~dtg~~--~-~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-----EL-KPVPVIFLDTGYE--F-P----ETYEFVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-----cc-cCceEEEeCCCCC--C-H----HHHHHHHHHHHHhCCCeEEECCCccH
Confidence 589999999999999999987331 11 4788999999963 1 2 35667888877 9999998876422
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
.... ...... ......+.+..|+.+|...+.+++++.|.+.+++||++||.+++.+++..
T Consensus 68 ~~~~-~~~~~~-------------------~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~ 127 (173)
T cd01713 68 AEGL-ALGLKG-------------------FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVV 127 (173)
T ss_pred HHHH-HHhhhc-------------------cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCccc
Confidence 1000 000000 00112245667889999999999999999999999999999998877665
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
.+ . ...+++.+++||.+++++||..|++.+++++.
T Consensus 128 ~~----------~--~~~~~~~~~~Pl~~w~~~di~~~~~~~~l~~~ 162 (173)
T cd01713 128 WT----------D--DGKGGILKVNPLLDWTYEDVWAYLARHGLPYN 162 (173)
T ss_pred cc----------c--CCCCCcEEEcchhcCCHHHHHHHHHHcCCCCC
Confidence 11 0 11345789999999999999999999999864
No 27
>PRK14561 hypothetical protein; Provisional
Probab=99.67 E-value=7.9e-16 Score=147.92 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=105.3
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
||+|+||||+||+++|+++.+ . +++.++|++.|.. .+++.++.+++ |++++++++++.+
T Consensus 2 kV~ValSGG~DSslll~~l~~---------~-~~v~a~t~~~g~~---------~e~~~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLER---------F-YDVELVTVNFGVL---------DSWKHAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred EEEEEEechHHHHHHHHHHHh---------c-CCeEEEEEecCch---------hHHHHHHHHHHHhCCCEEEEECCHHH
Confidence 799999999999999998854 2 5678899998852 13567888887 9999999987521
Q ss_pred CCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 188 EPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
.... ...+. ...++..+..+++.++..+| +|+++|++|||.||++++.+.+.
T Consensus 63 ~~~~~~~~~~-------------------------~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~ 115 (194)
T PRK14561 63 LEKAVDMIIE-------------------------DGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSE 115 (194)
T ss_pred HHHHHHHHHH-------------------------cCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHH
Confidence 0000 00000 00122345678888888877 99999999999999999988887
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHC
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFN 309 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~ 309 (521)
.++ +. ...++.++|||..++|+||+.|++.+
T Consensus 116 ~~a----~~--------~~~gi~iirPL~~~~K~eI~~la~~l 146 (194)
T PRK14561 116 IQS----LE--------DRKGVQYIRPLLGFGRKTIDRLVERL 146 (194)
T ss_pred Hhh----hh--------cCCCcEEEeeCCCCCHHHHHHHHHhh
Confidence 653 11 12357899999999999999999886
No 28
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.66 E-value=2.9e-15 Score=157.63 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=112.0
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc-------cCCEE
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK-------YFDSY 179 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e-------g~p~~ 179 (521)
.+++++|++|||+||+++++++.+ .|+++.++|+|.+.. .+.. ..+.++.+++ +++++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k---------rG~~V~av~~~~~~~--~~~~----~~~~v~~l~~~l~~~~~~~~l~ 235 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK---------RGCRVVAVHFFNEPA--ASEK----AREKVERLANSLNETGGSVKLY 235 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH---------cCCeEEEEEEeCCCC--ccHH----HHHHHHHHHHHHhhcCCCceEE
Confidence 457999999999999999999965 478999999997742 1222 2334444443 35778
Q ss_pred EEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhH
Q psy3867 180 FTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLA 259 (521)
Q Consensus 180 iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA 259 (521)
++++.+++. .... . .....++.+|+.++++++.++|+++|+++|++|||++|.+
T Consensus 236 ~v~~~~~~~----~i~~---------------------~-~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~a 289 (371)
T TIGR00342 236 VFDFTDVQE----EIIH---------------------I-IPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVA 289 (371)
T ss_pred EEeCHHHHH----HHHh---------------------c-CCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhh
Confidence 887765321 0000 0 0012357889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCC
Q psy3867 260 TKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDL 311 (521)
Q Consensus 260 ~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L 311 (521)
.+++.|+..- . ...++.++|||..++|.||..|++..|.
T Consensus 290 sqtl~nl~~i-----~--------~~~~~~I~rPLi~~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 290 SQTLENLRVI-----Q--------AVSNTPILRPLIGMDKEEIIELAKEIGT 328 (371)
T ss_pred ccHHHHHHHH-----h--------ccCCCCEEeCCCCCCHHHHHHHHHHhCC
Confidence 9888887421 0 0124679999999999999999999995
No 29
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.64 E-value=2.5e-15 Score=157.85 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=112.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
-++|+||||||+||++||+++++ .+++ ++.++|+|+|.. . ++++.++++++ |++++++++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e--------~~g~~~Viav~vd~g~~----~----~e~~~a~~~a~~lGi~~~vvd~~ 65 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE--------KYGYDEVITVTVDVGQP----E----EEIKEAEEKAKKLGDKHYTIDAK 65 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH--------hcCCCEEEEEEEECCCC----h----HHHHHHHHHHHHcCCCEEEEeCH
Confidence 36899999999999999999875 2477 899999999852 1 24566888887 9999999998
Q ss_pred cccCCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcc--hhHH-
Q psy3867 185 QALEPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQT--DLAT- 260 (521)
Q Consensus 185 evf~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~d--DlA~- 260 (521)
+.|.... .+.+... . ..+ ..+ ..+.+|+.+++..|.++|+++|+++|++||+++ |++.
T Consensus 66 eef~~~~i~~~i~~n--~---------~~~------gYp-l~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rf 127 (394)
T PRK13820 66 EEFAKDYIFPAIKAN--A---------LYE------GYP-LGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRF 127 (394)
T ss_pred HHHHHHHHHHHHHhC--c---------ccc------CCc-CcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHH
Confidence 5443110 0111100 0 000 000 123689999999999999999999999999665 8773
Q ss_pred -HHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCceec
Q psy3867 261 -KIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 261 -~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~~ 316 (521)
.. .++ . ++.++.|+++ ++++||+.|++.+|||+..+
T Consensus 128 e~~----~~a---------------~-~l~viaP~re~~ltK~ei~~ya~~~gip~~~~ 166 (394)
T PRK13820 128 EAV----FRA---------------S-DLEVIAPIRELNLTREWEIEYAKEKGIPVPVG 166 (394)
T ss_pred HHh----hHh---------------h-cCeeeCchhccCCCHHHHHHHHHHcCCCCCcC
Confidence 22 111 1 2467889998 89999999999999998654
No 30
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.63 E-value=3.8e-15 Score=161.78 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=128.2
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
.+|+++++|||+||+|++|++.+ .|+++.++|||.|.... ...+.+.....++++.. +++++++++.+
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~k---------rG~~v~~l~f~~g~~~~-~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~ 246 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMR---------RGSRVHYCFFNLGGAAH-EIGVKQVAHYLWNRYGSSHRVRFISVDFEP 246 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHH---------cCCEEEEEEEecCCchh-HHHHHHHHHHHHHHhCccCCceEEEEecHH
Confidence 47999999999999999999965 48899999999986321 00011111111123332 67799988775
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
+++. .... . .+.+ ...+++++..++-..+|+++|+++|+||||++|.|.+.|.|
T Consensus 247 ~~~~----i~~~---~-------~~~~------------~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~n 300 (482)
T PRK01269 247 VVGE----ILEK---V-------DDGQ------------MGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTN 300 (482)
T ss_pred HHHH----HHhc---C-------CCce------------ecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHH
Confidence 3320 0000 0 0000 11133333333337899999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHHHHHHCC
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFP 345 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~Le~~~P 345 (521)
+.... ...++.+.|||..+.|+||..|++..|+..+..++++.... ...+-.++.++..+++..|
T Consensus 301 l~~~~-------------~~~~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p~~C~~--~~~~p~~~~~~~~~~~~~~ 365 (482)
T PRK01269 301 LRLID-------------NVTDTLILRPLIAMDKEDIIDLAREIGTEDFAKTMPEYCGV--ISKKPTVKAVKEKIEAEEK 365 (482)
T ss_pred HHhhh-------------hhcCCceecCCcCCCHHHHHHHHHHhCChhhcccCCCCcee--eCCCCcCCCCHHHHHHHhh
Confidence 76421 01246788999999999999999999986555556652110 1123346777888888888
Q ss_pred CHHHHHHHHH
Q psy3867 346 STVSTVFRTA 355 (521)
Q Consensus 346 stv~tV~rT~ 355 (521)
+...++++.+
T Consensus 366 ~~~~~~~~~~ 375 (482)
T PRK01269 366 KFDFAILDRV 375 (482)
T ss_pred cCCHHHHHHH
Confidence 7754444443
No 31
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.62 E-value=1e-14 Score=147.74 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.-.+-+|.+...+. +.+++|||||||+|||||+.+.+. ..+..+.++|||+|.. + .++++++
T Consensus 7 esi~ilRe~~~~f~------~~vv~~SGGKDS~VlLhLa~kaf~-----~~~~p~~vl~IDTG~~--F-----~Et~efr 68 (294)
T TIGR02039 7 EAIHIIREVAAEFE------RPVMLYSIGKDSSVLLHLARKAFY-----PGPLPFPLLHVDTGWK--F-----REMIAFR 68 (294)
T ss_pred HHHHHHHHHHHhcC------CcEEEEecChHHHHHHHHHHHHhc-----ccCCCeEEEEEecCCC--C-----HHHHHHH
Confidence 34455666666543 357889999999999999988542 1235678899999972 3 2367788
Q ss_pred HHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q psy3867 170 ATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCT 247 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~ 247 (521)
.++++ |++++++..++.++. + ++. .. ......|..+|...|.++++++|++
T Consensus 69 d~~a~~~gl~l~v~~~~~~~~~------g----~~~--~~---------------~~~~~~c~vlK~~pL~~al~e~g~d 121 (294)
T TIGR02039 69 DHMVAKYGLRLIVHSNEEGIAD------G----INP--FT---------------EGSALHTDIMKTEALRQALDKNQFD 121 (294)
T ss_pred HHHHHHhCCCEEEEechhhhhc------C----ccc--cc---------------cChHHHhhHHHHHHHHHHHHHcCCC
Confidence 88887 999999988753221 1 100 00 0122357889999999999999999
Q ss_pred eEEeccCcchhHHHHHHHHhcCCCCCCCCCCcC----------CCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 248 KIFTAETQTDLATKIIANISLGKGAHVPLDVGF----------SDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 248 ~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~----------~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++++|++.|+.+.+.-..+..-|.....|+... .....+....++||.+|++.||+.|+..++||+.
T Consensus 122 a~itG~RRDEe~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 122 AAFGGARRDEEKSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIV 198 (294)
T ss_pred EEEecCChhhhhHhhcCceeeccccccccCccccCchhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 999999999998775333322111112222210 0001234667899999999999999999999974
No 32
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.61 E-value=7.8e-15 Score=146.46 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.+..-++..+.+. ..++|+|++|||+||+++++++.+.+ ++++.+++++++.. .+. .+.+.+
T Consensus 8 ~l~~~l~~~v~~~----~~~~V~vglSGGiDSsvla~l~~~~~--------~~~~~~~~~~~~~~--~~~----~e~~~a 69 (250)
T TIGR00552 8 EIEDFLRGYVQKS----GAKGVVLGLSGGIDSAVVAALCVEAL--------GEQNHALLLPHSVQ--TPE----QDVQDA 69 (250)
T ss_pred HHHHHHHHHHHHh----CCCCEEEECCCcHHHHHHHHHHHHhh--------CCceEEEEECCccC--CCH----HHHHHH
Confidence 3344444444443 35689999999999999999987632 44788888987641 112 245678
Q ss_pred HHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q psy3867 170 ATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCT 247 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~ 247 (521)
+++++ |++++++++.+++... ...... . .......+++.+|.++|+.+|..+|+++|+.
T Consensus 70 ~~~a~~lgi~~~~i~i~~~~~~~--~~~~~~--~---------------~~~~~~~~~~n~car~R~~~L~~~A~~~g~~ 130 (250)
T TIGR00552 70 LALAEPLGINYKNIDIAPIAASF--QAQTET--G---------------DELSDFLAKGNLKARLRMAALYAIANKHNLL 130 (250)
T ss_pred HHHHHHhCCeEEEEcchHHHHHH--HHHhcc--c---------------cCCchHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 88888 9999999988654310 000000 0 0000112457889999999999999999999
Q ss_pred eEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 248 KIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 248 ~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+|+|||++++. .|.+ +.+ ......++||.+++++||+.|++.+|+|..
T Consensus 131 ~laTgh~~E~~---------~G~~------t~~----gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~ 178 (250)
T TIGR00552 131 VLGTGNKSELM---------LGYF------TKY----GDGGCDIAPIGDLFKTQVYELAKRLNVPER 178 (250)
T ss_pred EEcCCcHHHHh---------hCCe------ecc----cCCccCccccCCCcHHHHHHHHHHHCccHH
Confidence 99999997542 2321 111 112346999999999999999999999963
No 33
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.59 E-value=1.7e-15 Score=157.35 Aligned_cols=175 Identities=19% Similarity=0.138 Sum_probs=104.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccC--hHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVS--ISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s--~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
.||+||+|||+||+|.++||++ .|++|..+|+......... ....++.++.++++|+ |||++++++.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~---------~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE---------QGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH---------CT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred CeEEEEccCCHHHHHHHHHHHh---------hcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 4899999999999999999986 5899999999865421110 1123456888999998 9999999999
Q ss_pred cccCCchh----hhhhcccCCchhhhchhhhhhhhhhccCCCc-cHHHHHH-HHHHHHHHHHHHh-cCCCeEEeccCcch
Q psy3867 185 QALEPDNM----KLYTDVAELPLEQFAKDSEINKMFQTVTTLS-SRQYLLQ-TLRQNLLLQAAKK-LNCTKIFTAETQTD 257 (521)
Q Consensus 185 evf~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~T-sre~l~~-~lR~~lL~~~A~~-lg~~~V~tGh~~dD 257 (521)
+.|..... +.|.. ..| ++|-+|+ .+|+.+|.+.|++ +|+++|+|||.+.-
T Consensus 72 ~~f~~~Vi~~f~~~Y~~-----------------------G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri 128 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRK-----------------------GRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARI 128 (356)
T ss_dssp HHHHHHTHHHHHHHHHT-----------------------T----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEE
T ss_pred HHHHHHHHHHHHHHHhc-----------------------CCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEE
Confidence 86653222 12221 112 6899994 5889999999999 99999999998753
Q ss_pred hHHHHHHHHhcCCCCCCCCCCc-CCCCCC--CCeeeeecCCCCCHHHHHHHHHHCCCCcee
Q psy3867 258 LATKIIANISLGKGAHVPLDVG-FSDDRT--GDIITLRPLRDFSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 258 lA~~~L~nl~~GrG~~l~~~~~-~~d~~~--~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~ 315 (521)
.-..--....+-||.....+.. |...-. .--++++||.+++|.||+.+|+..||+...
T Consensus 129 ~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~ 189 (356)
T PF03054_consen 129 EKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPVAE 189 (356)
T ss_dssp EEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT
T ss_pred EeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccC
Confidence 2110000001112322222222 221111 113689999999999999999999999543
No 34
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=139.28 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=117.0
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
...+|+||||||+||++|+.++.+.+ |-++.+++||.+..+. +.++.++.+++ |+.+.++++.
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~l--------G~~v~AvTv~sP~~p~-------~e~e~A~~~A~~iGi~H~~i~~~ 80 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEAL--------GDNVVAVTVDSPYIPR-------REIEEAKNIAKEIGIRHEFIKMN 80 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHh--------ccceEEEEEecCCCCh-------hhhhHHHHHHHHhCCcceeeehh
Confidence 34599999999999999999998754 6789999999876432 24556777776 9999999987
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~ 264 (521)
.+- +.|. .+...+|++|.+..+..|.+.|.+.|++.|+-|.|++|+-.
T Consensus 81 ~~~-----~~~~-----------------------~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~---- 128 (269)
T COG1606 81 RMD-----PEFK-----------------------ENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD---- 128 (269)
T ss_pred hcc-----hhhc-----------------------cCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC----
Confidence 421 1111 12235899999999999999999999999999999999643
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCcee---cCCCCCCC
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVH---VPSLATLA 323 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~---~~~~~~~~ 323 (521)
+| | ++.-. ....+--||.+ ++++||+.|++..|++++. ..|+.+..
T Consensus 129 ----~R----P---G~rA~--kE~gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aCl~sr~ 179 (269)
T COG1606 129 ----YR----P---GLRAL--KELGIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMACLASRI 179 (269)
T ss_pred ----CC----c---chhhH--HhcCCCChHHHhCCcHHHHHHHHHHcCCCcccCcccccccccc
Confidence 22 1 22111 11235679876 6999999999999999984 45655433
No 35
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=7.8e-15 Score=150.57 Aligned_cols=205 Identities=17% Similarity=0.112 Sum_probs=134.8
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
..||+||+|||+||+|.+++|++ .|++|.++|+......+.......+.++.++++|+ |+|++++++.+
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~---------QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~ 73 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKE---------QGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEK 73 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHH---------cCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHH
Confidence 46999999999999999999986 48999999997554211112223457788999998 99999999997
Q ss_pred ccCCc----hhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHH-HHHHHHHHHHHHHhcCCCeEEeccCcchhHH
Q psy3867 186 ALEPD----NMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLL-QTLRQNLLLQAAKKLNCTKIFTAETQTDLAT 260 (521)
Q Consensus 186 vf~~~----~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~-~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~ 260 (521)
.|... ..+.|.....+ +||-+| +.+++..|.++|+++|+++|+|||.+...-.
T Consensus 74 ~y~~~V~~~f~~~Y~~G~TP----------------------NPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~ 131 (356)
T COG0482 74 EFWNKVFEYFLAEYKAGKTP----------------------NPCILCNKEIKFKALLDYAKELGADYIATGHYARQRED 131 (356)
T ss_pred HHHHHHHHHHHHHHhCCCCC----------------------CcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecC
Confidence 65421 12334322211 578889 9999999999999999999999998754321
Q ss_pred HHHHHHhcCCCCCCCCCCcCC-C--CCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecC--CCCCCCCChhHHHHHHHH
Q psy3867 261 KIIANISLGKGAHVPLDVGFS-D--DRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVP--SLATLADPLASLQKAAES 335 (521)
Q Consensus 261 ~~L~nl~~GrG~~l~~~~~~~-d--~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~--~~~~~~~~~~Si~~l~~~ 335 (521)
.- ....-||.....+..|- . ....--.+++||.++.+.||+..|...+|+...-+ .-.+..++ .. .++
T Consensus 132 ~~--~~~l~r~~D~~KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi~~-~~----~~~ 204 (356)
T COG0482 132 EG--IELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFIGE-RK----FKD 204 (356)
T ss_pred Cc--ccccccCCCcccchhheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCcccCCcceecCC-CC----HHH
Confidence 10 11122333333333321 0 00111257999999999999999999999976532 22222222 12 355
Q ss_pred HHHHHHHHCCCHHHH
Q psy3867 336 FVTDLQTNFPSTVST 350 (521)
Q Consensus 336 fI~~Le~~~Pstv~t 350 (521)
|+.+....-|+-+-+
T Consensus 205 fl~~~~p~~~G~ii~ 219 (356)
T COG0482 205 FLGRYLPAKPGEIID 219 (356)
T ss_pred HHHhhCCCCCceEEe
Confidence 666544445655443
No 36
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.57 E-value=2.7e-14 Score=133.87 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=94.7
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
||+|+||||+||+++++++.+ .++++.++|+|.|... .. ..+.++++++ | |...++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~---------~~~~v~~~~~~~~~~~---~~----~~~~~~~~~~~~g-~~~~~~~~--- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK---------EGYEVHALSFDYGQRH---AK----EEEAAKLIAEKLG-PSTYVPAR--- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH---------cCCcEEEEEEECCCCC---hh----HHHHHHHHHHHHC-CCEEEeCc---
Confidence 689999999999999999875 3678999999988531 11 2345666665 5 32222110
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhH------HH
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLA------TK 261 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA------~~ 261 (521)
......++..+|+++|+++|++||+.+|.+ .+
T Consensus 61 ------------------------------------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~ 98 (169)
T cd01995 61 ------------------------------------------NLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPE 98 (169)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHH
Confidence 012335678899999999999999999964 23
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecC
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVP 317 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~ 317 (521)
++..+... ... ....++.++|||..+++.||+.|++..|+|+..+.
T Consensus 99 ~~~~~~~~--------~~~--~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s~ 144 (169)
T cd01995 99 FIEAMNKA--------LNL--GTENGIKIHAPLIDLSKAEIVRLGGELGVPLELTW 144 (169)
T ss_pred HHHHHHHH--------HHh--hcCCCeEEEeCcccCCHHHHHHHHhHcCCChhhee
Confidence 33222210 001 11345889999999999999999999999987653
No 37
>PRK08576 hypothetical protein; Provisional
Probab=99.57 E-value=4.1e-14 Score=150.45 Aligned_cols=172 Identities=19% Similarity=0.236 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHH
Q psy3867 84 KACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERK 163 (521)
Q Consensus 84 r~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~ 163 (521)
..||..+++.+..+.|++++ +.+|+|+||||+||++||+++.+.+ + .+.++|+|.|... +
T Consensus 214 N~~~le~~e~~~~~~Lr~~~----~~rVvVafSGGKDStvLL~La~k~~--------~-~V~aV~iDTG~e~---p---- 273 (438)
T PRK08576 214 NREVLEAFEKASIKFLRKFE----EWTVIVPWSGGKDSTAALLLAKKAF--------G-DVTAVYVDTGYEM---P---- 273 (438)
T ss_pred hHHHHHHHHHHHHHHHHHcC----CCCEEEEEcChHHHHHHHHHHHHhC--------C-CCEEEEeCCCCCC---h----
Confidence 35899999999999999865 3489999999999999999987632 1 3889999998622 1
Q ss_pred HHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHH
Q psy3867 164 ANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAA 241 (521)
Q Consensus 164 ~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A 241 (521)
++.+.++++++ |+++++...+.... ...++ . .+.++..|..+|...|.++|
T Consensus 274 et~e~~~~lae~LGI~lii~~v~~~~~---~~~~g----~--------------------p~~~~rcCt~lK~~pL~raa 326 (438)
T PRK08576 274 LTDEYVEKVAEKLGVDLIRAGVDVPMP---IEKYG----M--------------------PTHSNRWCTKLKVEALEEAI 326 (438)
T ss_pred HHHHHHHHHHHHcCCCEEEcccCHHHH---hhhcC----C--------------------CCcccchhhHHHHHHHHHHH
Confidence 24667888887 99998832221000 00000 0 11234568889999999999
Q ss_pred HhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 242 KKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 242 ~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
+++|++++++||..++-... .....+... ....+++..++||.+|+++||+.|+..++||+
T Consensus 327 ke~g~~~iatG~R~dES~~R-------~~~p~v~~~----~~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~ 387 (438)
T PRK08576 327 RELEDGLLVVGDRDGESARR-------RLRPPVVER----KTNFGKILVVMPIKFWSGAMVQLYILMNGLEL 387 (438)
T ss_pred HhCCCCEEEEEeeHHHhHHh-------hcCCccccc----ccCCCCeEEEeChhhCCHHHHHHHHHHhCCCC
Confidence 99999999999974332111 000001000 11124688999999999999999999999995
No 38
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.55 E-value=9.3e-14 Score=147.38 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=110.7
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc---cCCEEEEEc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK---YFDSYFTCL 183 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e---g~p~~iv~l 183 (521)
.+.+++|++|||.||+++++++.+ .|+++.++|++... ..+..+.+...+.++.+.. +++++++++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k---------~G~~v~av~~~~~~--~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMK---------RGVEIEAVHFHSPP--YTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHH---------CCCEEEEEEEeCCC--CCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 357999999999999999999865 47899999996421 1112222222333333332 499999998
Q ss_pred ccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHH
Q psy3867 184 EQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKII 263 (521)
Q Consensus 184 ~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L 263 (521)
+++. ..+... . +. ...+.+|++++.+++..+|+++|+++|+||||++|.+.+.+
T Consensus 244 ~~~~-----~~i~~~--~------------------~~-~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~ 297 (394)
T PRK01565 244 TEIQ-----EEIKKK--V------------------PE-SYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTL 297 (394)
T ss_pred HHHH-----HHHhhc--C------------------CC-ceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHH
Confidence 8532 011100 0 00 01245688899999999999999999999999999998887
Q ss_pred HHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 264 ANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
.++. + +. ...++.++|||..++|+||+.+++..|+.
T Consensus 298 ~~l~-~----i~--------~~~~~~V~rPLig~~K~EI~~lAr~iG~~ 333 (394)
T PRK01565 298 ESMY-A----IN--------AVTNLPVLRPLIGMDKEEIIEIAKEIGTY 333 (394)
T ss_pred HHHH-H----Hh--------hccCcEEEECCCCCCHHHHHHHHHHhCCH
Confidence 7774 2 10 01246799999999999999999999973
No 39
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.53 E-value=1e-13 Score=133.91 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=107.5
Q ss_pred EEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccC
Q psy3867 111 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALE 188 (521)
Q Consensus 111 VLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~ 188 (521)
++|++|||+||+++++++.+ .++++.++|+++|.. .. .+++.++++++ |+++++++++.+..
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~---------~g~~v~~~~~~~~~~---~~----~e~~~a~~~a~~lgi~~~~~~~~~~~~ 64 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD---------EGYEVHAITFDYGQR---HS----RELESARKIAEALGIEHHVIDLSLLKQ 64 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH---------cCCcEEEEEEECCCC---CH----HHHHHHHHHHHHhCCCeEEEechhhcc
Confidence 48999999999999999865 357899999998852 11 24567888887 99999999885321
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHH-HHHHHHHHHhcCCCeEEeccCcchhH------HH
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLR-QNLLLQAAKKLNCTKIFTAETQTDLA------TK 261 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR-~~lL~~~A~~lg~~~V~tGh~~dDlA------~~ 261 (521)
... ..+. ....... ...... . ....++..++.+. ..++..+|+++|++.|++|||.+|.+ ..
T Consensus 65 ~~~-~~~~-~~~~~~~-~~~~~~--~------~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~ 133 (201)
T TIGR00364 65 LGG-SALT-DESEIPP-QKSNEE--D------TLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDE 133 (201)
T ss_pred ccc-cccc-CCCCCCC-cCcccc--C------CCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHH
Confidence 100 0011 0000000 000000 0 0001122233333 36678899999999999999999975 45
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCC---CCceec
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFND---LSPVHV 316 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~---L~~~~~ 316 (521)
++..+..... .. ...+++++|||.+++|.||+.+++..| +++..+
T Consensus 134 f~~~~~~~~~--------~~--~~~~~~i~~Pl~~~~K~eI~~la~~~g~~~~~~~~t 181 (201)
T TIGR00364 134 FVKAFNHALN--------LG--MLTPVKIRAPLMDLTKAEIVQLADELGVLDLVIKLT 181 (201)
T ss_pred HHHHHHHHHH--------hh--cCCCeEEEECCcCCCHHHHHHHHHHcCCccccHhhC
Confidence 5555543210 00 123489999999999999999999999 765443
No 40
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.50 E-value=2.7e-13 Score=142.65 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=113.0
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~e 185 (521)
+||+||||||+||+++++++++. +++++.++|+|.|.. ++++.++++++ |+ +++++++.+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~--------lG~eViavt~d~Gq~---------~dle~a~~~A~~lGi~~~~viD~~~ 65 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET--------YGCEVIAFTADVGQG---------EELEPIREKALKSGASEIYVEDLRE 65 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh--------hCCeEEEEEEecCCH---------HHHHHHHHHHHHcCCCeEEEEcCHH
Confidence 58999999999999999999762 378999999999862 24667888887 87 688889986
Q ss_pred ccCCchh-hhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCc--chhHHHH
Q psy3867 186 ALEPDNM-KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQ--TDLATKI 262 (521)
Q Consensus 186 vf~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~--dDlA~~~ 262 (521)
.|..... +.+.... .+ .+. .-..+.+|+.+....|.++|+++|+++|++|+++ +|+..--
T Consensus 66 ef~~~~i~~~i~~n~-----------~y---~g~---ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~ 128 (399)
T PRK00509 66 EFVRDYVFPAIRANA-----------LY---EGK---YPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFE 128 (399)
T ss_pred HHHHHhHHHHHHhCh-----------Hh---cCc---CCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHH
Confidence 5531100 1111000 00 000 0135678899999999999999999999999998 8876522
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCC---CHHHHHHHHHHCCCCcee
Q psy3867 263 IANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDF---SSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 263 L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~---~kkEI~~Ya~~~~L~~~~ 315 (521)
..-.+ + ..++.++.||+++ +++|++.|++.+|||...
T Consensus 129 ~g~~a------------l----~pel~VisPlre~~~~tK~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 129 LGIAA------------L----APDLKVIAPWREWDLKSREELIAYAEEHGIPIPV 168 (399)
T ss_pred HHHHH------------h----CCCCeeecchhhcCCCCHHHHHHHHHHcCCCCCC
Confidence 11111 1 1245799999998 999999999999998653
No 41
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.49 E-value=3.5e-13 Score=142.12 Aligned_cols=158 Identities=22% Similarity=0.191 Sum_probs=110.0
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQA 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~ev 186 (521)
||+||||||+||+++++++++ .++++.++|+|.|.. .++++.+++.++ |+ +++++++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e---------~g~~V~av~id~Gq~--------~~e~~~a~~~a~~lGi~~~~viD~~~e 63 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLRE---------KGYEVIAYTADVGQP--------EEDIDAIPEKALEYGAENHYTIDAREE 63 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHH---------cCCEEEEEEEecCCC--------hHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 689999999999999999975 278999999999952 124667888887 87 7999999865
Q ss_pred cCCc-hhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcc--hhHHHHH
Q psy3867 187 LEPD-NMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQT--DLATKII 263 (521)
Q Consensus 187 f~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~d--DlA~~~L 263 (521)
|... ..+.+... .. + ..++ + -...+.|.++...|.++|++.|+++|+.||+.. |+.....
T Consensus 64 f~~~~~~~~i~~n--~~---y--~~~Y---~-------l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r 126 (394)
T TIGR00032 64 FVKDYGFAAIQAN--AF---Y--EGTY---P-------LSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFER 126 (394)
T ss_pred HHHhhchhhhcCC--cc---c--cCcc---c-------ccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHH
Confidence 5321 00111100 00 0 0000 0 012456789999999999999999999999764 6644111
Q ss_pred HHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCceecC
Q psy3867 264 ANISLGKGAHVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVHVP 317 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~~~ 317 (521)
..... ..++.++.||++ ++++|+..|++.+|||+..+.
T Consensus 127 ~~~~~----------------~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~ 166 (394)
T TIGR00032 127 SIRLL----------------NPDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSK 166 (394)
T ss_pred HHHHh----------------CCCCeEECchhhcCCCHHHHHHHHHHcCCCeeEec
Confidence 11100 124679999965 899999999999999987653
No 42
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.48 E-value=4e-13 Score=128.81 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=94.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHh-c-----cCCEEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAM-K-----YFDSYFTC 182 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~-e-----g~p~~iv~ 182 (521)
.|+|+.||||.||.+.++++.+ .|+++.++|++.+...+... .+ ..+.+.+.. + .+++++++
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~k---------rG~~V~~l~f~~~~~~~~~~--~~-k~~~l~~~l~~~~~~~~~~l~~v~ 71 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMK---------RGCEVIALHFDSPPFTGEKA--RE-KVEELAEKLSEYSPGHKIRLYVVD 71 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHC---------BT-EEEEEEEE-TTTSSCCC--HH-HHHHHHHHHHCCSTTS-EEEEEEC
T ss_pred ceEEEEecCCccHHHHHHHHHH---------CCCEEEEEEEECCCCCCHHH--HH-HHHHHHHHHHHhCCCcceeEEEEC
Confidence 5899999999999999999964 59999999999442111111 11 222333332 2 36777877
Q ss_pred cccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHH
Q psy3867 183 LEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKI 262 (521)
Q Consensus 183 l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~ 262 (521)
+.+++.. ... .. ....+|-+|+++..+.-.++|++.|++.|+||+++.+.|.+.
T Consensus 72 ~~~~~~~----i~~---------------------~~-~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQT 125 (197)
T PF02568_consen 72 FTEVQKE----ILR---------------------GV-KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQT 125 (197)
T ss_dssp HHHHHHH----HHH---------------------HS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--
T ss_pred cHHHHHH----HHh---------------------cC-CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhh
Confidence 7653311 000 00 112478899999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCC
Q psy3867 263 IANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDL 311 (521)
Q Consensus 263 L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L 311 (521)
+.|+..= + ..-+..++|||..+.|.||..+++..|.
T Consensus 126 l~nL~~i------------~-~~~~~pIlRPLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 126 LENLRVI------------E-SASDLPILRPLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp HHHHHHH------------G-GG--S-EE-TTTT--HHHHHHHHHHTT-
T ss_pred HHHHhhh------------h-cccCCceeCCcCCCCHHHHHHHHHHhCc
Confidence 9888531 0 1124679999999999999999999994
No 43
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.47 E-value=3.8e-13 Score=133.66 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=107.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
++|+|++||||||+||||++.+ .+.++.++|||+|.. + .++.+.++++.+ |++++++..+..
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~---------~~~~i~vvfiDTG~~--~-----pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQ---------VDPDIPVIFLDTGYL--F-----PETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHh---------cCCCCcEEEecCCCC--C-----HHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 4699999999999999999976 345788999999962 2 246677777776 999999987642
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
+. .......+. +. .+...++..|..+|...|.+++++++. +++|++.++-.....
T Consensus 105 ~~----~~~~~~~~~--------------~~--~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R~~--- 159 (241)
T PRK02090 105 AA----EQEARYGGL--------------WE--QSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTRAN--- 159 (241)
T ss_pred HH----HHHHHcCCC--------------cc--ccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchhcc---
Confidence 10 000000000 00 111346788999999999999999887 899999776332210
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
++. +.. .+.+..++||.+|+.+||..|++.++||+
T Consensus 160 -------~~~---~~~--~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~ 194 (241)
T PRK02090 160 -------LPV---LEI--DGGRFKINPLADWTNEDVWAYLKEHDLPY 194 (241)
T ss_pred -------Cce---eee--cCCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 111 111 12577899999999999999999999985
No 44
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.46 E-value=1.4e-12 Score=132.87 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=114.9
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
++++++||||||+|||||+.+++.. .+..+.++|||.|.. + .+++++..++++ |++++++..++.+
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~-----~~~~~pvl~VDTG~~--F-----pEt~efrD~~a~~~gl~Liv~~~~~~~ 106 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRP-----TRPPFPLLHVDTTWK--F-----REMIDFRDRRAKELGLDLVVHHNPDGI 106 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcc-----cCCCeeEEEeCCCCC--C-----HHHHHHHHHHHHHhCCcEEEecChHHH
Confidence 5789999999999999999885521 234567899999973 2 236777777777 9999987655422
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
+. +... .. ...+..|..+|...|.++..++|++.+++|+..++-..+.-..+.
T Consensus 107 ~~----------G~~~--~~---------------~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~if 159 (312)
T PRK12563 107 AR----------GIVP--FR---------------HGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIF 159 (312)
T ss_pred Hh----------CCCc--cc---------------CCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCcee
Confidence 11 1000 00 123455677788999999999999999999999997766543333
Q ss_pred cCCCCCCCCCCcCCC----------CCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 268 LGKGAHVPLDVGFSD----------DRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d----------~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
.-|.....|+..... ...|....+.||.+|++.||+.|.+.++||+.
T Consensus 160 s~r~~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 160 SFRSAFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLV 216 (312)
T ss_pred cccccccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCC
Confidence 322222334332100 01245678999999999999999999999964
No 45
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.46 E-value=5.3e-13 Score=140.72 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=109.7
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCC-EEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFD-SYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p-~~iv~l~ 184 (521)
.+||+||||||+||+++++++++ ++++++.++|+|.|.. . ++++.++++|+ |++ ++++++.
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e--------~~G~eViav~id~Gq~----~----~el~~a~~~A~~lGi~~~~v~dl~ 68 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE--------NYGCEVVCFTADVGQG----I----EELEGLEAKAKASGAKQLVVKDLR 68 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH--------hhCCeEEEEEEECCCC----h----HHHHHHHHHHHHcCCCEEEEEeCH
Confidence 36999999999999999999976 2478999999999851 1 24667888887 997 5788888
Q ss_pred cccCCchh-hhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCc--chhHHH
Q psy3867 185 QALEPDNM-KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQ--TDLATK 261 (521)
Q Consensus 185 evf~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~--dDlA~~ 261 (521)
+.|..... +.+.... . +.+ .+ + -+..+.|.+..+.+.++|+++|+++|+.|+++ +|+..-
T Consensus 69 ~ef~~~~i~p~i~~Na--~---ye~--~Y---~-------~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf 131 (404)
T PLN00200 69 EEFVRDYIFPCLRANA--I---YEG--KY---L-------LGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRF 131 (404)
T ss_pred HHHHHhhcCHHHHcCC--c---ccc--ee---c-------cccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHH
Confidence 65532110 1111000 0 000 00 0 01123456888899999999999999999998 777652
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCC---HHHHHHHHHHCCCCceec
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFS---SKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~---kkEI~~Ya~~~~L~~~~~ 316 (521)
-+.--+ + ..++.++.|++++. ++|++.|++.+|||....
T Consensus 132 ~~~~~a------------l----~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~ 173 (404)
T PLN00200 132 ELTFFA------------L----NPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVT 173 (404)
T ss_pred HHHHHH------------h----CCCCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCC
Confidence 111110 1 12457999999974 999999999999986544
No 46
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.45 E-value=8.9e-13 Score=138.69 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=110.1
Q ss_pred EEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCC-EEEEEccccc
Q psy3867 111 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFD-SYFTCLEQAL 187 (521)
Q Consensus 111 VLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p-~~iv~l~evf 187 (521)
|+||||||+||+++|+++++. .++++.++|+|.|.. . +.++.+++.++ |++ ++++++.+.|
T Consensus 1 Vvva~SGGlDSsvll~~l~e~--------~~~eV~av~~d~Gq~--~------~~~e~a~~~a~~lG~~~~~viD~~~ef 64 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK--------GGYEVIAVTADVGQP--E------EEIEAIEEKALKLGAKKHVVVDLREEF 64 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh--------CCCeEEEEEEECCCc--c------hhHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 689999999999999999762 346899999999962 1 12366888887 986 9999998755
Q ss_pred CCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcc--hhHHHHHH
Q psy3867 188 EPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQT--DLATKIIA 264 (521)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~d--DlA~~~L~ 264 (521)
.... .+.+... .. ....+ -..+.+|+.+....+.++|+++|+++|++|++.. |+..
T Consensus 65 ~~~~i~~~i~an--~~-----~~g~y----------~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~r---- 123 (385)
T cd01999 65 VEDYIFPAIQAN--AL-----YEGTY----------PLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVR---- 123 (385)
T ss_pred HHHhhHHHHHhC--cc-----ccCCC----------cCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHH----
Confidence 3110 0111100 00 00000 0123467888888899999999999999999863 5442
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCC---CHHHHHHHHHHCCCCceec-CCCC
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRDF---SSKEVIYYNIFNDLSPVHV-PSLA 320 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~---~kkEI~~Ya~~~~L~~~~~-~~~~ 320 (521)
+-.| +. ....++.++.||+++ +++|++.|++.+|||+... .+++
T Consensus 124 -f~~~----------~~-al~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~py 171 (385)
T cd01999 124 -FELA----------FY-ALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPY 171 (385)
T ss_pred -HHHH----------HH-hhCCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCC
Confidence 1111 10 012357899999999 9999999999999998765 4554
No 47
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.45 E-value=1.1e-12 Score=130.77 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.+..-+|..+.+.+ .++|+|++|||+||+++++++.+.+. ..++.+++++.+.. +. .+.+.+
T Consensus 9 ~l~~~l~~~~~~~~----~~~vvv~lSGGiDSs~~a~la~~~~~-------~~~v~~~~~~~~~~---~~----~~~~~a 70 (248)
T cd00553 9 ALVLFLRDYLRKSG----FKGVVLGLSGGIDSALVAALAVRALG-------RENVLALFMPSRYS---SE----ETREDA 70 (248)
T ss_pred HHHHHHHHHHHHhC----CCCEEEeCCCcHHHHHHHHHHHHHhC-------cccEEEEECCCCCC---CH----HHHHHH
Confidence 34444455555433 35899999999999999999987431 26788999997742 12 245678
Q ss_pred HHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q psy3867 170 ATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCT 247 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~ 247 (521)
+++++ |++++++++++++..... .+. .......+..+.+.++.++|+.+|..+|+++|+.
T Consensus 71 ~~~a~~lgi~~~~i~i~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~ 132 (248)
T cd00553 71 KELAEALGIEHVNIDIDPAVEAFLA-LLG-----------------ESGGSELEDLALGNIQARLRMVILYALANKLGGL 132 (248)
T ss_pred HHHHHHhCCeEEEeccHHHHHHHHH-HHh-----------------hhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCE
Confidence 88887 999999999865432100 000 0000011223467888999999999999999998
Q ss_pred eEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 248 KIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 248 ~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++.|||- ++.++ |- .+.+. .....++||.++.+.||+.+++..|+|..
T Consensus 133 vlgTgn~----~E~~~-----G~------~t~~g----d~~~~i~Pl~~l~K~eV~~la~~~~ip~~ 180 (248)
T cd00553 133 VLGTGNK----SELLL-----GY------FTKYG----DGAADINPIGDLYKTQVRELARYLGVPES 180 (248)
T ss_pred EEcCCcH----hHHHh-----CC------eeccC----CcccCccccCCCcHHHHHHHHHHHCchHH
Confidence 8888872 23222 21 11111 12357899999999999999999999963
No 48
>PLN02347 GMP synthetase
Probab=99.42 E-value=1.3e-12 Score=143.03 Aligned_cols=166 Identities=13% Similarity=0.174 Sum_probs=105.9
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTC 182 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~ 182 (521)
+...++|+||||||+||+++++++++++ |.++.+++||+|... . .| ..+.++.+++ |+++++++
T Consensus 226 ~~~~~~vvvalSGGVDSsvla~l~~~al--------G~~v~av~id~g~~~-~--~E---~~~~~~~~a~~lgi~~~vvd 291 (536)
T PLN02347 226 VGPDEHVICALSGGVDSTVAATLVHKAI--------GDRLHCVFVDNGLLR-Y--KE---QERVMETFKRDLHLPVTCVD 291 (536)
T ss_pred hccCCeEEEEecCChhHHHHHHHHHHHh--------CCcEEEEEEeCCCCC-h--hH---HHHHHHHHHHHcCCcEEEEe
Confidence 4456789999999999999999998754 668999999999742 2 12 2223355665 99999999
Q ss_pred cccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHH----HhcCC--CeEEeccCcc
Q psy3867 183 LEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAA----KKLNC--TKIFTAETQT 256 (521)
Q Consensus 183 l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A----~~lg~--~~V~tGh~~d 256 (521)
+++.|= ..-+++ .+.-.||.+|...-..++.+.+ .++|. ++++.|++.+
T Consensus 292 ~~e~fl-------~~l~~~------------------~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~ 346 (536)
T PLN02347 292 ASERFL-------SKLKGV------------------TDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYP 346 (536)
T ss_pred CcHHHH-------hhCCCC------------------CChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCccc
Confidence 986431 100111 1112355556553335555544 44555 8999999999
Q ss_pred hhHHHHHHHHhcCC----CCCCCCCCcCCC-CCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 257 DLATKIIANISLGK----GAHVPLDVGFSD-DRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 257 DlA~~~L~nl~~Gr----G~~l~~~~~~~d-~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
|+.+..- ..|. ...+........ .......++.||++++|+||+.+++.+|||
T Consensus 347 D~~es~~---r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 347 DVIESCP---PPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred ccccccC---CCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCCC
Confidence 9877410 0111 011111111110 011234689999999999999999999999
No 49
>PRK13980 NAD synthetase; Provisional
Probab=99.42 E-value=7e-12 Score=126.28 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHH
Q psy3867 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKAN 165 (521)
Q Consensus 86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~ 165 (521)
...+.+..-+++.+.++++ ++|+|++|||+||+++++++.+.+. +.++.++|++.+.. +. .+
T Consensus 12 ~~~~~l~~~l~~~v~~~g~----~~vvv~lSGGiDSsv~a~l~~~~~~-------~~~v~av~~~~~~~---~~----~~ 73 (265)
T PRK13980 12 KVREIIVDFIREEVEKAGA----KGVVLGLSGGIDSAVVAYLAVKALG-------KENVLALLMPSSVS---PP----ED 73 (265)
T ss_pred HHHHHHHHHHHHHHHHcCC----CcEEEECCCCHHHHHHHHHHHHHhC-------ccceEEEEeeCCCC---CH----HH
Confidence 3445555566666666553 6899999999999999999987431 35789999998752 11 24
Q ss_pred HHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 166 NAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 166 l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
.+.++++++ |++++++++++++. .+... ++ . .+..+.+.++.++|+.+|..+|++
T Consensus 74 ~~~a~~la~~lgi~~~~i~i~~~~~-----~~~~~--~~-----~-----------~~~~~~~n~~aR~R~~~L~~~A~~ 130 (265)
T PRK13980 74 LEDAELVAEDLGIEYKVIEITPIVD-----AFFSA--IP-----D-----------ADRLRVGNIMARTRMVLLYDYANR 130 (265)
T ss_pred HHHHHHHHHHhCCCeEEEECHHHHH-----HHHHH--cc-----c-----------ccchHHHHHHHHHHHHHHHHHHhh
Confidence 566888887 99999999875432 11100 00 0 012356789999999999999999
Q ss_pred cCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 244 LNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 244 lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
+|+..|.||+. ++. ..|-+ +.+.| ....+.||.+++|.||+..++..|+|
T Consensus 131 ~g~lvlgTgn~-sE~--------~~G~~------t~~gD----~~~~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 131 ENRLVLGTGNK-SEL--------LLGYF------TKYGD----GAVDLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred cCCEEEcCCCH-hHH--------HhCCc------cCCCC----cccCcccCCCCcHHHHHHHHHHHCch
Confidence 99877777743 222 22321 12211 12248999999999999999999999
No 50
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.40 E-value=4.1e-12 Score=125.05 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=109.4
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCC-EEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFD-SYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p-~~iv~l~e 185 (521)
++++|+||||.||+++|+++.+ .+.++.+++||.|..+. .+++.++.+++ |++ +++++++.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~---------~~~~v~alt~dygq~~~-------~El~~a~~ia~~~gi~~h~vid~~~ 65 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ---------QYDEVHCVTFDYGQRHR-------AEIDVARELALKLGARAHKVLDVTL 65 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh---------cCCeEEEEEEEeCCCCH-------HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4799999999999999998865 23489999999997431 25677888888 996 99999885
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHH-HHHhcCCCeEEeccCcchhHH----
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQ-AAKKLNCTKIFTAETQTDLAT---- 260 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~-~A~~lg~~~V~tGh~~dDlA~---- 260 (521)
+-.+.. ..+. +..++.+... +. -.+..+.+..+|.+..-.+.. +|.++|++.|++|-|.+|...
T Consensus 66 l~~l~~-s~Lt-~~~~~~p~~~----~~-----~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDc 134 (231)
T PRK11106 66 LNELAV-SSLT-RDSIPVPDYE----PE-----ADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDC 134 (231)
T ss_pred cccccc-cccc-cccccCCccc----cc-----cCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCC
Confidence 321111 0111 0001110000 00 001112334455555555554 688999999999999988542
Q ss_pred --HHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCC-CCc--eecCCCC
Q psy3867 261 --KIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFND-LSP--VHVPSLA 320 (521)
Q Consensus 261 --~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~-L~~--~~~~~~~ 320 (521)
.++..+.. ...+. . ...+.|..||.+++|.||+.+++..| +|+ ..+.|-+
T Consensus 135 r~~Fi~A~~~--------~~~~~-~-~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SCy 189 (231)
T PRK11106 135 RDEFVKALNH--------AVSLG-M-AKDIRFETPLMWLNKAETWALADYYGQLDLVRHETLTCY 189 (231)
T ss_pred CHHHHHHHHH--------HHHhc-c-CCCcEEEecCCCCCHHHHHHHHHHcCCcccccCceeecc
Confidence 22221100 00000 0 12488999999999999999999999 887 4444443
No 51
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.39 E-value=4e-12 Score=124.86 Aligned_cols=176 Identities=14% Similarity=0.204 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHH
Q psy3867 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKAN 165 (521)
Q Consensus 86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~ 165 (521)
-|.+....++|+.++ +.++++|+|||.||++++-|+++++ |-++.+++||+|.... . +
T Consensus 6 ~~ie~~i~~ir~~vg-------~~kvi~alSGGVDSsv~a~L~~~Ai--------Gd~l~cvfVD~GLlR~---~----E 63 (315)
T COG0519 6 NFIEEAIEEIREQVG-------DGKVILALSGGVDSSVAAVLAHRAI--------GDQLTCVFVDHGLLRK---G----E 63 (315)
T ss_pred HHHHHHHHHHHHHhC-------CceEEEEecCCCcHHHHHHHHHHHh--------hcceEEEEecCCcccC---C----c
Confidence 455666677777665 3589999999999999999998865 6688999999998421 1 2
Q ss_pred HHHHHHHhc---cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867 166 NAQIATAMK---YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK 242 (521)
Q Consensus 166 l~~v~~~~e---g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~ 242 (521)
.+.+.+.+. |+++.+|+..+.| +..-+++ .+++ .+..+.+..--+.|.+.|+
T Consensus 64 ~e~V~~~f~~~~~~nl~~VdA~~~F-------l~~L~Gv-----tDPE-------------~KRKiIG~~FI~VFe~ea~ 118 (315)
T COG0519 64 AEQVVEMFREHLGLNLIVVDAKDRF-------LSALKGV-----TDPE-------------EKRKIIGREFIEVFEEEAK 118 (315)
T ss_pred HHHHHHHHHhhcCCceEEEchHHHH-------HHHhcCC-----CCHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 344666665 7788888876533 1111111 1112 2334455556677889999
Q ss_pred hcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCC--CCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 243 KLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFS--DDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 243 ~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~--d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++++++++-|.-..|..+.. .|.+..+....++. +. .-.++++-|||++.|+||+..++..|||..
T Consensus 119 k~~~~~LaQGTiYpDvIES~-----~g~~~~IKSHHNVGGLP~-~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~ 186 (315)
T COG0519 119 KLGAEFLAQGTIYPDVIESG-----TGKAGTIKSHHNVGGLPE-DMKLKLVEPLRELFKDEVRELGRELGLPEE 186 (315)
T ss_pred hCCcceEEecccccceeeec-----CCCCCccccccccCCCcc-ccceeeeHHHHHHhHHHHHHHHHHhCCCHH
Confidence 99999999999999998864 34333333322221 11 224779999999999999999999999965
No 52
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.39 E-value=5.1e-12 Score=131.80 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=108.7
Q ss_pred ccccccCC--CCceEEecCCcccchHHHHHH---------HHHHHHHHHhhcCCCCCC-CeEEEecCCCccHHHHHHHHH
Q psy3867 62 KLCPRCNT--NNGEVVLRLKDIYCKACLLQY---------LNHKFRAALGKSKMMRPQ-DKVLVAFSGSHSSMALLHLLQ 129 (521)
Q Consensus 62 ~~C~kCk~--~~a~i~~r~~~~~Cr~CF~~~---------i~~Kfr~~L~k~kli~~~-~kVLVa~SGG~DS~vLL~lL~ 129 (521)
+.|.+|.. ..|.|.+. .+..|..|-... -..++++.+.+++-...+ -.++||+|||+||+++|+++.
T Consensus 2 ~~C~~C~~~~t~p~i~fd-~~GvC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~ 80 (343)
T TIGR03573 2 KFCKRCVMPTTRPGITFD-EDGVCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLK 80 (343)
T ss_pred CcCCCCCCCCCCCCeeEC-CCCCchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHH
Confidence 56999964 35677776 578999998632 122355555554422222 469999999999999999985
Q ss_pred HHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhc
Q psy3867 130 EGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFA 207 (521)
Q Consensus 130 ~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~ 207 (521)
+ +++.++.++|+|.|.. ++ ...+.++++++ |++++++..+. +.+..
T Consensus 81 ~--------~~gl~~l~vt~~~~~~---~e----~~~~n~~~~~~~lgvd~~~i~~d~-------~~~~~---------- 128 (343)
T TIGR03573 81 K--------KLGLNPLLVTVDPGWN---TE----LGVKNLNNLIKKLGFDLHTITINP-------ETFRK---------- 128 (343)
T ss_pred H--------HhCCceEEEEECCCCC---CH----HHHHHHHHHHHHcCCCeEEEeCCH-------HHHHH----------
Confidence 4 2467889999998863 11 23456778877 99999988762 11100
Q ss_pred hhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcch
Q psy3867 208 KDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTD 257 (521)
Q Consensus 208 ~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dD 257 (521)
-+... +.....++..|..+++..+.++|+++|+.+|++||+++.
T Consensus 129 ---l~~~~---~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 129 ---LQRAY---FKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred ---HHHHH---HhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 00011 112235677888899999999999999999999999984
No 53
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.36 E-value=3.2e-12 Score=124.28 Aligned_cols=171 Identities=20% Similarity=0.200 Sum_probs=95.0
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQA 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~ev 186 (521)
|++|.||||+||+++|+++++ .++++.+++||+|++.. ++++.++++++ |+ ++++++++.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~---------~~~~v~al~~~YGq~~~-------~El~~a~~i~~~l~v~~~~~i~l~~~ 64 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKK---------EGYEVYALTFDYGQRHR-------RELEAAKKIAKKLGVKEHEVIDLSFL 64 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHH---------H-SEEEEEEEESSSTTC-------HHHHHHHHHHHHCT-SEEEEEE-CHH
T ss_pred CEEEEeCCCHHHHHHHHHHHH---------cCCeEEEEEEECCCCCH-------HHHHHHHHHHHHhCCCCCEEeeHHHH
Confidence 689999999999999998875 36799999999998521 35678899998 99 9999999853
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHH----HHHhcCCCeEEeccCcchhH---
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQ----AAKKLNCTKIFTAETQTDLA--- 259 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~----~A~~lg~~~V~tGh~~dDlA--- 259 (521)
..............++..... ..+.....-..|+.+|.. +|..+|++.|++|.+.+|..
T Consensus 65 ~~~~~s~L~~~~~~v~~~~~~--------------~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~yp 130 (209)
T PF06508_consen 65 KEIGGSALTDDSIEVPEEEYS--------------EESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYP 130 (209)
T ss_dssp HHCSCHHHHHTT--------------------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--G
T ss_pred HhhCCCcccCCCcCCcccccc--------------cCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCC
Confidence 322111111111111100000 001122234567777766 56789999999999988743
Q ss_pred ---HHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCC
Q psy3867 260 ---TKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA 320 (521)
Q Consensus 260 ---~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~ 320 (521)
..++..+..= ... .....+++..||.+++|.||...+...|+|+..+.|-+
T Consensus 131 Dc~~~F~~~~~~~--------~~~--~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~T~SCy 184 (209)
T PF06508_consen 131 DCRPEFIDAMNRL--------LNL--GEGGPVRIETPLIDLTKAEIVKLGVELGVPLELTWSCY 184 (209)
T ss_dssp GGSHHHHHHHHHH--------HHH--HHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B-ST
T ss_pred CChHHHHHHHHHH--------HHh--cCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHHccCCC
Confidence 2333322210 000 01246899999999999999999999998876655443
No 54
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.36 E-value=6.5e-12 Score=108.33 Aligned_cols=103 Identities=25% Similarity=0.283 Sum_probs=76.3
Q ss_pred EEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhccCCEEEEEcccccCCc
Q psy3867 111 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPD 190 (521)
Q Consensus 111 VLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~iv~l~evf~~~ 190 (521)
|+|++|||+||+++++++++ .+.++.++|+|++..+ +.. ..+
T Consensus 1 v~v~~SGG~DS~~ll~~l~~---------~~~~~~~~~~~~~~~~-----~~~----~~~-------------------- 42 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKK---------LGYQVIAVTVDHGISP-----RLE----DAK-------------------- 42 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHH---------hCCCEEEEEEcCCCcc-----cHH----HHH--------------------
Confidence 68999999999999999976 2347899999998732 010 111
Q ss_pred hhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCC
Q psy3867 191 NMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGK 270 (521)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~Gr 270 (521)
.++..+|+..+.++|++.|+++|++|||.+|++++.+++.+.
T Consensus 43 ------------------------------------~~~~~~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~~-- 84 (103)
T cd01986 43 ------------------------------------EIAKEAREEAAKRIAKEKGAETIATGTRRDDVANRALGLTAL-- 84 (103)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHH--
Confidence 112238888999999999999999999999999999998871
Q ss_pred CCCCCCCCcCCCCCCCCeeeeecCC
Q psy3867 271 GAHVPLDVGFSDDRTGDIITLRPLR 295 (521)
Q Consensus 271 G~~l~~~~~~~d~~~~~v~iiRPLr 295 (521)
....+. .+..++.+++||+
T Consensus 85 ----~~~~~~--~~~~~~~~~~Pl~ 103 (103)
T cd01986 85 ----LNLTVT--LSGAGIQSLEPLI 103 (103)
T ss_pred ----hcCCCC--cccCcceEeecCC
Confidence 111111 1244688999985
No 55
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.34 E-value=5.8e-12 Score=132.31 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=106.5
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~ 184 (521)
.++|+||||||.||+++|+++++ .++++.++++|.|..+. ++++.++++++ |+ +++++++.
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e---------~G~~Viavt~d~gq~~~-------~El~~a~~~A~~lG~~~~~viD~~ 65 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE---------RGYAVHTVFADTGGVDA-------EERDFIEKRAAELGAASHVTVDGG 65 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH---------cCCcEEEEEEEeCCCCH-------HHHHHHHHHHHHcCCCeEEEecCH
Confidence 36899999999999999999875 37899999999996321 24677888887 98 69999999
Q ss_pred cccCCchhh-hhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccC--cchhHHH
Q psy3867 185 QALEPDNMK-LYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAET--QTDLATK 261 (521)
Q Consensus 185 evf~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~--~dDlA~~ 261 (521)
+.|...... ...... +... .+ .+.+ .+ |.++...|.++|+++|+++|++|.+ .+|+..-
T Consensus 66 eef~e~vi~p~i~aNa------~y~G-~y-----Pl~~-~n-----R~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rf 127 (400)
T PRK04527 66 PAIWEGFVKPLVWAGE------GYQG-QY-----PLLV-SD-----RYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRF 127 (400)
T ss_pred HHHHHHHHHHHHhcch------hhcC-CC-----CCcc-cc-----HHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhc
Confidence 766432110 000000 0000 00 0011 13 3446668889999999999999998 7776542
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCC------CHHHHHHHHHHCCCCceec
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDF------SSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~------~kkEI~~Ya~~~~L~~~~~ 316 (521)
-+.-- . ..++.++.||+++ .++|...|++.+|||...+
T Consensus 128 rpg~~------------A-----l~el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~ 171 (400)
T PRK04527 128 DLAVK------------A-----LGDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAK 171 (400)
T ss_pred cHHHH------------H-----hhcCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCC
Confidence 11111 1 1146789999986 5677789999999987543
No 56
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.21 E-value=6.9e-11 Score=108.93 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc-cCCEEEEEcccccC
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK-YFDSYFTCLEQALE 188 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e-g~p~~iv~l~evf~ 188 (521)
.++|++|||+||+++|+++.+. .+.++.++|+|+|.. ++ +.++.++++++ |++++.+.++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~--------~~~~v~~v~~~~g~~---~~----~~~~~~~~~a~~g~~~~~~~~~~~-- 65 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK--------YGLNPLAVTVDNGFN---SE----EAVKNIKNLIKKGLDLDHLVINPE-- 65 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH--------hCCceEEEEeCCCCC---CH----HHHHHHHHHHHhCCCeEEEecCHH--
Confidence 5899999999999999998752 234788899999863 12 23566777777 588776655420
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchh
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDL 258 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDl 258 (521)
.+.. .....+. .....++..|+.+++.++.++|+++|++.|++||+++++
T Consensus 66 -----~~~~------------~~~~~l~---~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~ 115 (154)
T cd01996 66 -----EMKD------------LQLARFK---AKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQE 115 (154)
T ss_pred -----HHHH------------HHHHHHh---cccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHh
Confidence 0000 0000000 012235667889999999999999999999999999875
No 57
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.18 E-value=6.4e-11 Score=110.60 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=88.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
+++|++|||+||+|||+++.+... ++.++|+|.|.. . .++.++++++.+ |+++++......+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~---------~~~vv~~dtg~e--~-----p~t~~~~~~~~~~~~~~i~~~~~~~~~ 64 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR---------KVPVVFIDTGYE--F-----PETYEFVDELAKRYGIPIIVYRPPETF 64 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT---------TCEEEEEE-STB--------HHHHHHHHHHHHHTTCEEEEEETTSHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC---------CCcEEEEecCcc--C-----HHHHHHHHHHHhhhhhhhhhcccccch
Confidence 489999999999999999987442 236899999962 2 235667777766 8887776655321
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
.. .+... . .....-+...+..++.+-+.++.++++...+++|...++-..
T Consensus 65 ~~----~~~~~------------~-------~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~------- 114 (174)
T PF01507_consen 65 EQ----RFILY------------G-------WPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPR------- 114 (174)
T ss_dssp HH----HHHHH------------H-------HSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTG-------
T ss_pred hh----ccccc------------c-------ccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhh-------
Confidence 10 00000 0 000000113567788888889999999999999987776332
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
|.. .. .... +....+...++||.+++++||..|.+.+++++.
T Consensus 115 --R~~-~~-~~~~-~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~~ 156 (174)
T PF01507_consen 115 --RAK-LP-MFEF-DEDNPKIIRVYPIADWTEEDVWDYIKANGLPYN 156 (174)
T ss_dssp --CCG-SS-SEEE-ETTTTSEEEE-TTTT--HHHHHHHHHHHT--B-
T ss_pred --hhh-ch-hhhc-ccccCCEEEEEehhhCCHHHHHHHHHHhcCCCc
Confidence 221 10 0111 112233667889999999999999999999853
No 58
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.17 E-value=4.1e-10 Score=108.96 Aligned_cols=171 Identities=15% Similarity=0.135 Sum_probs=108.0
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
+|.+|.||||.||+++|+++++ .++++++++||+|+++ ..+++.++++++ |+++++++++.+
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~---------~~~ev~alsfdYGQrh-------~~Ele~A~~iak~lgv~~~iid~~~~ 66 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKK---------EGYEVHALTFDYGQRH-------RKELEAAKELAKKLGVPHHIIDVDLL 66 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHh---------cCCEEEEEEeeCCCCc-------HHHHHHHHHHHHHcCCCeEEechhHH
Confidence 5889999999999999999875 4689999999999864 135778888988 999999999853
Q ss_pred cCCchhhhhhcccCCchhhhch-hhhhhhhhhccCCCccHHHHHHHHHHHHHH----HHHHhcCCCeEEeccCcchhHH-
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAK-DSEINKMFQTVTTLSSRQYLLQTLRQNLLL----QAAKKLNCTKIFTAETQTDLAT- 260 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~----~~A~~lg~~~V~tGh~~dDlA~- 260 (521)
-....+. .. +..+.++.... .+.+.. -.-..|+.+++ .+|..+|++.|++|-|.+|...
T Consensus 67 ~~~~~sa-Lt-d~~~~vp~~~~~~~~~p~-------------t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgY 131 (222)
T COG0603 67 GEIGGSA-LT-DDSIDVPKYEFAEEEIPA-------------TFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGY 131 (222)
T ss_pred hhcCCCc-Cc-CCCccccccccccccCcc-------------eEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCC
Confidence 2221110 11 11111111110 000000 01233444444 4678899999999998887442
Q ss_pred -----HHHHHHhcCCCCCCCCCCcCCCCCCCCee-eeecCCCCCHHHHHHHHHHCCCCceecCCCC
Q psy3867 261 -----KIIANISLGKGAHVPLDVGFSDDRTGDII-TLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA 320 (521)
Q Consensus 261 -----~~L~nl~~GrG~~l~~~~~~~d~~~~~v~-iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~ 320 (521)
.++..+..- ..+. ...++. +.-||.+++|.||+..+...|+++..+.+-+
T Consensus 132 PDcrpefi~a~~~~--~~l~--------~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SCY 187 (222)
T COG0603 132 PDCRPEFIEALNEA--LNLG--------TEKGVRIIHAPLMELTKAEIVKLADELGVPLELTWSCY 187 (222)
T ss_pred CCCCHHHHHHHHHH--HHhh--------ccCCccEEeCCeeeccHHHHHHHHHHhCCcchhceEEe
Confidence 121111100 0000 012344 6899999999999999999998877665544
No 59
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.15 E-value=7.1e-10 Score=115.57 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=111.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH-HHHhc---cCCEEEEEc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI-ATAMK---YFDSYFTCL 183 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v-~~~~e---g~p~~iv~l 183 (521)
..|+|+.+|||.||-|..|++.+ .|.++.++|++.+. ..++.-+++..... ..+.. .+.++++++
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mk---------RG~~v~~v~f~~~p--~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMK---------RGVEVIPVHFGNPP--YTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHh---------cCCEEEEEEEcCCC--CchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 36899999999999999999864 58999999997542 22222233222222 22333 467888887
Q ss_pred ccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHH
Q psy3867 184 EQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKII 263 (521)
Q Consensus 184 ~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L 263 (521)
.++... ... ......++-+++++.+++-.++|++.|+..|+||+++.++|.++|
T Consensus 244 ~~v~~~-----i~~---------------------~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl 297 (383)
T COG0301 244 TEVQEE-----ILE---------------------KVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTL 297 (383)
T ss_pred HHHHHH-----HHh---------------------hcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHH
Confidence 754311 110 001112456788888999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 264 ANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
.|+..= ...-+..|+|||..+.|.||..+++..|..
T Consensus 298 ~nL~~i-------------~~~t~~pIlRPLI~~DK~eIi~~Ar~IgT~ 333 (383)
T COG0301 298 ENLRVI-------------DSVTNTPVLRPLIGLDKEEIIEIARRIGTY 333 (383)
T ss_pred HHHHHH-------------HhccCCceeccccCCCHHHHHHHHHHhCCh
Confidence 999531 011246799999999999999999999854
No 60
>PRK05370 argininosuccinate synthase; Validated
Probab=99.15 E-value=2.5e-10 Score=120.27 Aligned_cols=165 Identities=14% Similarity=0.009 Sum_probs=110.9
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFT 181 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv 181 (521)
++.|+||+||||||.|+++++..|++ + +++|+++++|.|.. .. ++++.+++.+. |. +++++
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e--------~-~~eVia~~aDvGQ~---~~----ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQ--------K-GAVPYAYTANLGQP---DE----DDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHh--------c-CCeEEEEEEECCCC---Cc----cchHHHHHHHHHhCCCEEEEe
Confidence 56789999999999999999999876 2 78999999999961 01 13455777665 77 79999
Q ss_pred EcccccCCchhhhhhcccCCchhhhc-h-hhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhH
Q psy3867 182 CLEQALEPDNMKLYTDVAELPLEQFA-K-DSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLA 259 (521)
Q Consensus 182 ~l~evf~~~~~~~~~~~~~~~~~~~~-~-~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA 259 (521)
++.+.|-....+...... . +. . ...+. + . -.+.+.+..+.+.++|++.|+++|+-|
T Consensus 72 Dlr~eF~e~~i~aI~anA--~---Y~~~~e~~Y~-----l--~---t~LaRplia~~lv~~A~~~ga~aIAHG------- 129 (447)
T PRK05370 72 DCRAQLVAEGIAAIQCGA--F---HISTGGVTYF-----N--T---TPLGRAVTGTMLVAAMKEDGVNIWGDG------- 129 (447)
T ss_pred ccHHHHHHHHHHHHHcCC--c---cccccCcccc-----C--C---CcchHHHHHHHHHHHHHHhCCcEEEEc-------
Confidence 998765322111111100 0 00 0 00010 0 0 123467888889999999999999999
Q ss_pred HHHHHHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCCC-------CHHHHHHHHHHCCCCcee
Q psy3867 260 TKIIANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRDF-------SSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 260 ~~~L~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~-------~kkEI~~Ya~~~~L~~~~ 315 (521)
+.|+|. ++..+..+. .-..++.++-|.|++ +++|...|++.+|||...
T Consensus 130 -------~TGKGNDQvRFE~~~~-aL~P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~ 185 (447)
T PRK05370 130 -------STYKGNDIERFYRYGL-LTNPELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKM 185 (447)
T ss_pred -------CCCCCCchHHHHHHHH-HhCCCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCc
Confidence 556663 222222221 113468999999987 789999999999999653
No 61
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=99.12 E-value=2.6e-09 Score=105.23 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=102.1
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
++++++++|||+||+|||||+.+.. +..+.|||||.|.. + .++.+++.++.+ ++.+.++....
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~--------~~~i~vv~vDTg~~--f-----pET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSIS--------EPMIPVIFIDTLYH--F-----PQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhh--------CCCCCEEEEeCCCC--C-----HHHHHHHHHHHHHhCCceEEEEeCC
Confidence 4579999999999999999998732 13567899999963 2 236666777666 75565554432
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
... ........+.. ++ ..++...|...+-.-|.++.++++.+.+++|-..++-..
T Consensus 90 ~~~---~~~~~~~~G~~------------~~-----~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~----- 144 (226)
T TIGR02057 90 CES---EADFEAKYGKL------------LW-----QKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSA----- 144 (226)
T ss_pred chh---HHHHHHhcCCC------------cc-----ccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcc-----
Confidence 100 00000000000 00 013455678888888888888899999999977655321
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
|. .+ ..+.....+++..+.||.+|+..||+.|.+.++||+.
T Consensus 145 ----Ra-~~---~~~~~d~~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~n 185 (226)
T TIGR02057 145 ----RA-NL---PVIEIDEQNGILKVNPLIDWTFEQVYQYLDAHNVPYN 185 (226)
T ss_pred ----cc-CC---ccccccCCCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 11 11 1111112345778899999999999999999999963
No 62
>KOG2805|consensus
Probab=99.08 E-value=1.1e-10 Score=116.12 Aligned_cols=206 Identities=14% Similarity=0.121 Sum_probs=122.2
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC--CCCccChHHHHHHHHHHHHHhc--cCCEEEEEc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG--SISQVSISERKANNAQIATAMK--YFDSYFTCL 183 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g--~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l 183 (521)
-++|+||+|||+||+|.++||+. .|+.+.+||+-.- .....+....+++++.++.+|+ ++|++.|++
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~---------~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAA---------RGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHh---------cCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 46899999999999999999975 5889999988421 1111112234567899999999 999999999
Q ss_pred ccccCCch----hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHH-HHHHHHHHHHHHH-hcCCCeEEeccCcch
Q psy3867 184 EQALEPDN----MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLL-QTLRQNLLLQAAK-KLNCTKIFTAETQTD 257 (521)
Q Consensus 184 ~evf~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~-~~lR~~lL~~~A~-~lg~~~V~tGh~~dD 257 (521)
...+.... .+.|..... .++.-.| +.+++..+.+.|. .+|+++|++||.+.-
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~T----------------------PNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~ 133 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRT----------------------PNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARV 133 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCC----------------------CCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeee
Confidence 85432211 122321111 1233344 5677775556665 579999999998764
Q ss_pred hHHHHH---HHHhcCCCCCCCCCCcCCCCC-CCCe-eeeecCCCCCHHHHHHHHHHCCCCceecCCCC--CCCCChhHHH
Q psy3867 258 LATKII---ANISLGKGAHVPLDVGFSDDR-TGDI-ITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA--TLADPLASLQ 330 (521)
Q Consensus 258 lA~~~L---~nl~~GrG~~l~~~~~~~d~~-~~~v-~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~--~~~~~~~Si~ 330 (521)
..+... +.+..+. .-+..++-|...- ...+ +.+.||..++|.||...|+..|+|....|-.. +..+++ +
T Consensus 134 ~~~~~~~~~~~l~~~~-d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICFvgk~---~ 209 (377)
T KOG2805|consen 134 VLEDEDNAESHLLISK-DMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICFVGKI---K 209 (377)
T ss_pred ecCcccCcceeEeecc-cccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCccccCcccceeEEeccc---h
Confidence 333211 0011100 0011111111000 0011 45899999999999999999999954433110 111111 1
Q ss_pred HHHHHHHHHHHHHCCCHHH
Q psy3867 331 KAAESFVTDLQTNFPSTVS 349 (521)
Q Consensus 331 ~l~~~fI~~Le~~~Pstv~ 349 (521)
+ .++|+.+.-..-|+.+-
T Consensus 210 ~-F~dFl~~yi~~~~g~Il 227 (377)
T KOG2805|consen 210 H-FSDFLQRYIGSSPGPIL 227 (377)
T ss_pred h-HHHHHHHhcCCCCCCeE
Confidence 1 56777777666677654
No 63
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=99.05 E-value=3.9e-09 Score=102.81 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=96.6
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
.+++|++|||+||+|||||+.+. +.++.++|+|.|.. + .++.+++.++.+ ++.+.++..+.-
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~---------~~~~~v~f~DTg~e--f-----peT~efv~~~~~~~~l~i~~~~~~~~ 77 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKI---------SPDIPVIFLDTGYH--F-----PETYELIDELTERYPLNIKVYKPDLS 77 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc---------CCCCcEEEecCCCC--C-----HHHHHHHHHHHHHhCCceEEECCchh
Confidence 36999999999999999999762 23467899999962 3 235667777766 777666543311
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
+ ..+....+. . ++ ...+...|..++..-|.++.++++...+++|-..++-..+.
T Consensus 78 ~-----~~~~~~~g~---------~---~~-----~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~---- 131 (212)
T TIGR00434 78 L-----AEQAAKYGD---------K---LW-----EQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRA---- 131 (212)
T ss_pred H-----HHHHHhcCC---------C---cc-----ccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCcccc----
Confidence 1 000000000 0 00 00123345666667777777777778889998777633211
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.+.. ... +. ..++..+.||.+++.+||..|.+.++||+
T Consensus 132 ------~~~~-~~~-~~-~~~~~~v~PI~dWt~~dVw~Yi~~~~lp~ 169 (212)
T TIGR00434 132 ------NLSI-LNI-DE-KFGILKVLPLIDWTWKDVYQYIDAHNLPY 169 (212)
T ss_pred ------CCce-eee-cC-CCCcEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 1110 011 11 22466799999999999999999999995
No 64
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.04 E-value=2.7e-09 Score=106.09 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+...++..+++.+ .++++|++|||.||++++.++++++. .-++.+|+++.+.. +. .+.+.
T Consensus 3 ~~l~~~L~~~~~~~g----~~~vVvglSGGiDSav~A~La~~Alg-------~~~v~~v~mp~~~~---~~----~~~~~ 64 (242)
T PF02540_consen 3 EALVDFLRDYVKKSG----AKGVVVGLSGGIDSAVVAALAVKALG-------PDNVLAVIMPSGFS---SE----EDIED 64 (242)
T ss_dssp HHHHHHHHHHHHHHT----TSEEEEEETSSHHHHHHHHHHHHHHG-------GGEEEEEEEESSTS---TH----HHHHH
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEcCCCCCHHHHHHHHHHHhh-------hccccccccccccC---Ch----HHHHH
Confidence 344555566666654 26899999999999999999998762 23788899985532 22 24566
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++++ |+++.++++++++.. +... ..... .....+.+..++|..++..+|..+|+
T Consensus 65 A~~la~~lgi~~~~i~i~~~~~~-----~~~~-------~~~~~----------~~~~~~Ni~aR~Rm~~ly~~a~~~~~ 122 (242)
T PF02540_consen 65 AKELAEKLGIEYIVIDIDPIFDA-----FLKS-------LEPAD----------DDLARGNIQARIRMTTLYALANKYNY 122 (242)
T ss_dssp HHHHHHHHTSEEEEEESHHHHHH-----HHHH-------HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHhCCCeeccchHHHHHH-----Hhhh-------hccch----------hhhhhhhHHHHHHHHHHHHHhcccce
Confidence 788887 999999999875421 1100 00000 11135667788999999999998874
Q ss_pred CeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 247 TKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 247 ~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+++|.. ...+. ..|- .+.+.|. ..-+-|+.++.|.||+..+++.|+|..
T Consensus 123 --lVlgT~--N~sE~-----~~Gy------~T~~GD~----~~d~~Pi~~L~K~eV~~la~~l~ip~~ 171 (242)
T PF02540_consen 123 --LVLGTG--NKSEL-----LLGY------FTKYGDG----AGDIAPIADLYKTEVRELARYLGIPEE 171 (242)
T ss_dssp --EEBE----CHHHH-----HHTC------SHTTTTT----SSSBETTTTS-HHHHHHHHHHTTCGHH
T ss_pred --EEecCC--cHHHh-----hcCc------ccccCcc----cccceeeCCcCHHHHHHHHHHHhhHHH
Confidence 666642 12221 2231 1122111 223789999999999999999999954
No 65
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.01 E-value=4e-09 Score=108.58 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=113.8
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCL 183 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l 183 (521)
..+||+||||||.|-++.+.+|++ +.+++|+++++|.|+ + . ++++.+++-+. |. +++++++
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e--------~~~~eVia~tadvGQ--~--e----ed~~~i~eKA~~~Ga~~~~viD~ 66 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKE--------KGGAEVIAVTADVGQ--P--E----EDLDAIREKALELGAEEAYVIDA 66 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHH--------hcCceEEEEEEeCCC--C--h----HHhHHHHHHHHHhCCceEEEeec
Confidence 357999999999999999999876 346999999999996 1 1 24666777765 64 5999999
Q ss_pred ccccCCchh-hhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHH
Q psy3867 184 EQALEPDNM-KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKI 262 (521)
Q Consensus 184 ~evf~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~ 262 (521)
.+.|-.... +..... .. ++. .+ +-. ..+.|.+.-+.+.++|++.|+++|+-|
T Consensus 67 reeF~~~yi~~~i~an--a~---Yeg--~Y-------pL~---TalaRPLIak~lVe~A~k~ga~avaHG---------- 119 (403)
T COG0137 67 REEFVEDYIFPAIKAN--AL---YEG--VY-------PLG---TALARPLIAKKLVEAAKKEGADAVAHG---------- 119 (403)
T ss_pred HHHHHHHHHHHHHHhh--ce---eec--cc-------ccc---chhhHHHHHHHHHHHHHHcCCCEEEec----------
Confidence 876532110 000000 00 000 00 000 135688888899999999999999999
Q ss_pred HHHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCceec
Q psy3867 263 IANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 263 L~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~~ 316 (521)
+.|.|. ++....++. .-..+++++.|.|+ +++.|...|+..+|||...+
T Consensus 120 ----cTGKGNDQvRFe~~~~-al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 120 ----CTGKGNDQVRFELAIL-ALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred ----CCCCCCceeeeeeehh-hhCCCcEEEeehhhhccChHHHHHHHHHcCCCcccc
Confidence 678884 555555443 22567999999997 57889999999999997654
No 66
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=99.00 E-value=1.5e-09 Score=93.96 Aligned_cols=92 Identities=25% Similarity=0.342 Sum_probs=76.3
Q ss_pred eeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhhhhc--C
Q psy3867 288 IITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTS--M 365 (521)
Q Consensus 288 v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~~~~--~ 365 (521)
+..||||..+.++||..|+.++|||++..+|++.. .+.+..++++|..|++.+|++..+++++..++...... .
T Consensus 1 v~rIRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~----~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~~~ 76 (104)
T TIGR00269 1 VPRIKPLRYIPEKEVVLYAFLNELKVHLDECPYSS----LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKELSE 76 (104)
T ss_pred CCcccccccCCHHHHHHHHHHcCCCcCCCCCCCCC----CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcccc
Confidence 35699999999999999999999999999999743 46667789999999999999999999999888743211 1
Q ss_pred -cccccccccccccCCCcC
Q psy3867 366 -NVNNTCLLCKAPLDTRAD 383 (521)
Q Consensus 366 -~~~~~C~lC~~~ld~~~~ 383 (521)
....+|..||.|-..+..
T Consensus 77 ~~~~~~C~~CG~pss~~iC 95 (104)
T TIGR00269 77 QEDLRRCERCGEPTSGRIC 95 (104)
T ss_pred cccCCcCCcCcCcCCcccc
Confidence 145789999998776544
No 67
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.99 E-value=9.2e-09 Score=99.00 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=100.7
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
|++|+||||+||+++|+++.+ .|+++.++++..+...+.. .-....++.++.+++ |+|+++++++.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~---------~G~~v~~l~~~~~~~~~~~-~~h~~~~e~~~~~A~~lgipl~~i~~~~-- 68 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE---------EGHEVVALLNLTPEEGSSM-MYHTVNHELLELQAEAMGIPLIRIEISG-- 68 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH---------cCCEEEEEEEEecCCCCcc-cccccCHHHHHHHHHHcCCcEEEEeCCC--
Confidence 589999999999999999876 4788999888855421110 000113566778887 99999998752
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
.. +++. ...+..|.+++++ |++.|+.|++.+|.-.+-+.+++
T Consensus 69 ~~------------------------------------e~~~-~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~ 110 (194)
T cd01994 69 EE------------------------------------EDEV-EDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVC 110 (194)
T ss_pred Cc------------------------------------hHHH-HHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHH
Confidence 00 0111 2233445566667 99999999999998888788877
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
.. -++..+.||-.....|+..=.-..|+..+..
T Consensus 111 ~~----------------~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv 143 (194)
T cd01994 111 ER----------------LGLEPLAPLWGRDQEELLREMIEAGFKAIII 143 (194)
T ss_pred HH----------------cCCEEEecccCCCHHHHHHHHHHcCCeEEEE
Confidence 53 2467899999999999888777888886653
No 68
>PRK08557 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=107.11 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=97.4
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+..++|+||||+||+|+|+++.+. +..+.++|+|+|.. + .++.++++++++ |++++++.-+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~---------~~~i~vvfvDTG~e--f-----pET~e~ve~v~~~ygl~i~v~~~~~ 244 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV---------IPDLEVIFIDTGLE--Y-----PETINYVKDFAKKYDLNLDTLDGDN 244 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh---------CCCCEEEEEECCCC--C-----HHHHHHHHHHHHHhCCCEEEEechH
Confidence 468999999999999999998762 23567899999963 2 236677888887 99999886432
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh---cCCCeEEeccCcchhHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK---LNCTKIFTAETQTDLATKI 262 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~---lg~~~V~tGh~~dDlA~~~ 262 (521)
... . ....+++. . ....-|..++-.-|.++.++ .+....++|...++-+.+.
T Consensus 245 f~~-----~-~~~~G~Ps----~---------------~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra 299 (417)
T PRK08557 245 FWE-----N-LEKEGIPT----K---------------DNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRA 299 (417)
T ss_pred HHH-----H-HhhccCCc----c---------------cchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhc
Confidence 110 0 00111210 0 11233456666677776665 3445778998777755432
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 263 IANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 263 L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
-..... ..++ ......++|+.+++..||..|...+++|+
T Consensus 300 ~~~~~~--------~~~~----~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~ 338 (417)
T PRK08557 300 NLDYER--------KSGF----IDFQTNVFPILDWNSLDIWSYIYLNDILY 338 (417)
T ss_pred cCceec--------cccc----ccCceeEEecccCCHHHHHHHHHHcCCCC
Confidence 111100 0011 11223569999999999999999999986
No 69
>PTZ00323 NAD+ synthase; Provisional
Probab=98.93 E-value=4.2e-08 Score=99.97 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=110.9
Q ss_pred cccchHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccCh
Q psy3867 80 DIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSI 159 (521)
Q Consensus 80 ~~~Cr~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~ 159 (521)
..|=-..|.+.....+++.+++.+ .++++||+|||.||++++.++.+.+... +.. ...++.+.-.. ..++
T Consensus 22 ~~~~~~~~i~~~~~~L~~~l~~~g----~~~vVVglSGGVDSav~aaLa~~alg~~---~~~-~~~~~~v~~P~--~ss~ 91 (294)
T PTZ00323 22 RAFNPAAWIEKKCAKLNEYMRRCG----LKGCVTSVSGGIDSAVVLALCARAMRMP---NSP-IQKNVGLCQPI--HSSA 91 (294)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC----CCcEEEECCCCHHHHHHHHHHHHHhccc---cCC-ceEEEEEECCC--CCCH
Confidence 344455777777777888777754 3589999999999999999998866321 001 12233333222 1122
Q ss_pred HHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHH
Q psy3867 160 SERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLL 237 (521)
Q Consensus 160 ~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL 237 (521)
.+.+.++++++ |++++++++++++..-. .......+. ....+ ....+-.++|...+
T Consensus 92 ----~~~~~A~~la~~lGi~~~~idi~~l~~~~~-~~i~~~~~~------~~~~~-----------~~~n~~ar~R~~~l 149 (294)
T PTZ00323 92 ----WALNRGRENIQACGATEVTVDQTEIHTQLS-SLVEKAVGI------KGGAF-----------ARGQLRSYMRTPVA 149 (294)
T ss_pred ----HHHHHHHHHHHHhCCcEEEEECcHHHHHHH-HHHhhhhcc------cchhh-----------HHHhHHHHHHhHHH
Confidence 24566888887 99999999997552100 000000000 00000 11122234555555
Q ss_pred HHHHH---hcCCCeEEecc-CcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 238 LQAAK---KLNCTKIFTAE-TQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 238 ~~~A~---~lg~~~V~tGh-~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
+.+|. +.|...|+.|. |.+|.... | |......++.-+-|+.+++|.||+.+++..++|
T Consensus 150 Y~la~~~~~~g~~~lV~GT~N~sE~~~~-------G----------y~t~~GDg~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 150 FYVAQLLSQEGTPAVVMGTGNFDEDGYL-------G----------YFCKAGDGVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred HHHHHHHhhcCCCeEEECCCCchhhhHh-------c----------hHhhcCCCCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 55554 67899999998 88885321 2 111111224457899999999999999999999
No 70
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.90 E-value=2.4e-08 Score=113.10 Aligned_cols=169 Identities=14% Similarity=0.023 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.....+++.+++.+ .++|+|++|||+||+++|.++.+++.+- ....+++.+|++ .+. +.++ ...+.+
T Consensus 347 ~~v~~l~~~~~~~~----~~~vvvglSGGiDSal~l~l~~~a~~~l--g~~~~~v~~v~m-p~~--~ss~----~s~~~a 413 (679)
T PRK02628 347 IQVSGLAQRLRATG----LKKVVIGISGGLDSTHALLVAAKAMDRL--GLPRKNILAYTM-PGF--ATTD----RTKNNA 413 (679)
T ss_pred HHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHHHHHhh--CCCcceEEEEEC-CCC--CCCH----HHHHHH
Confidence 33444555555433 6799999999999999999888765321 111368889998 553 3333 345678
Q ss_pred HHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhc-cC-CCccHHHHHHHHHHHHHHHHHHhcC
Q psy3867 170 ATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQT-VT-TLSSRQYLLQTLRQNLLLQAAKKLN 245 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s-~~-s~Tsre~l~~~lR~~lL~~~A~~lg 245 (521)
+++++ |+++++++++++++... +... ..|.. .. ...+.+.++.++|+.+|..+|.+.|
T Consensus 414 ~~la~~LGi~~~~i~I~~~~~~~~-~~l~-----------------~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g 475 (679)
T PRK02628 414 VALMKALGVTAREIDIRPAALQML-KDIG-----------------HPFARGEPVYDVTFENVQAGERTQILFRLANQHG 475 (679)
T ss_pred HHHHHHhCCeEEEEEcHHHHHHHH-HHhc-----------------cccccCCcccchhhhhhhHHHHHHHHHHHHhhcC
Confidence 88888 99999999987553211 0000 00000 00 0124578899999999999999999
Q ss_pred CCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC-CC-eeeeecCCCCCHHHHHHHHHHC
Q psy3867 246 CTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRT-GD-IITLRPLRDFSSKEVIYYNIFN 309 (521)
Q Consensus 246 ~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~-~~-v~iiRPLrd~~kkEI~~Ya~~~ 309 (521)
+.+|.|| +..|.++... +- + || .--+-|+.+++|.+|...+++.
T Consensus 476 ~lvl~Tg----n~sE~~~Gy~-----------T~-----~~GD~~~~~~~~~~l~Kt~v~~l~~~~ 521 (679)
T PRK02628 476 GIVIGTG----DLSELALGWC-----------TY-----GVGDHMSHYNVNASVPKTLIQHLIRWV 521 (679)
T ss_pred cEEEcCC----chhhHHhCce-----------ec-----CCCCcccccccccCCcHHHHHHHHHHH
Confidence 9999999 3334332111 11 2 22 3357899999999999998887
No 71
>PRK13794 hypothetical protein; Provisional
Probab=98.90 E-value=2.9e-08 Score=107.92 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=99.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+++++|+||||+||+|+|+++.+.+ +.++.++|+|+|.. + .++.++++++++ |++++++..+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~--------~~~~~vvfiDTG~e--f-----pet~e~i~~~~~~~gl~i~~~~~~~ 311 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKAL--------GINFPVLFNDTGLE--F-----PETLENVEDVEKHYGLEIIRTKSEE 311 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHh--------CCCeEEEEEECCCC--C-----hHHHHHHHHHHHhcCCcEEEEchHH
Confidence 4689999999999999999997743 34567899999962 2 135677777777 89988876542
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc--CCCeEEeccCcchhHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL--NCTKIFTAETQTDLATKII 263 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l--g~~~V~tGh~~dDlA~~~L 263 (521)
|. .. ....++|. . ....-|..++-.-|.++.++. |-..+++|-..++-..+..
T Consensus 312 -f~----~~-~~~~G~P~----~---------------~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~ 366 (479)
T PRK13794 312 -FW----EK-LEEYGPPA----R---------------DNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSK 366 (479)
T ss_pred -HH----HH-HHhcCCCC----C---------------cchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhc
Confidence 10 00 00011110 0 112234566666666666553 4567899988777654332
Q ss_pred HHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 264 ANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
... +. .+....+...+.|+.+|+..||..|...+++|+.
T Consensus 367 ~~~-------~~-----~~~~~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~n 405 (479)
T PRK13794 367 KPR-------IW-----RNPYIKKQILAAPILHWTAMHVWIYLFREKAPYN 405 (479)
T ss_pred Ccc-------cc-----cccCcCCcEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 111 00 0111123457899999999999999999999864
No 72
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.88 E-value=2.5e-08 Score=97.73 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=93.4
Q ss_pred EEecCCCccHHHHHHHHHHHhhhhcccccceeEE-EEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccC
Q psy3867 112 LVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC-AIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALE 188 (521)
Q Consensus 112 LVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~-~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~ 188 (521)
+++||||+||+++|+++++ .|+++. ++++.......+.. ....++.++.+++ |+|+++++++..-
T Consensus 1 ~vl~SGGkDS~~al~~a~~---------~G~~v~~l~~~~~~~~~~~~~--~~~~~~~~~~~A~~lgip~~~i~~~~~~- 68 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALE---------EGHEVRCLITVVPENEESYMF--HTPNIELTRLQAEALGIPLVKIETSGEK- 68 (218)
T ss_pred CeeecCcHHHHHHHHHHHH---------cCCEEEEEEEeccCCCCcccc--CCCCHHHHHHHHHHhCCCEEEEECCCCC-
Confidence 3789999999999999875 467775 55665321000000 0113456777777 9999999876210
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhc
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISL 268 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~ 268 (521)
+.+ .++ .+..+.+++++ |++.|++|++.+|....-+.+++.
T Consensus 69 ----~~~-----------------------------~~~-----l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~ 109 (218)
T TIGR03679 69 ----EKE-----------------------------VED-----LKGALKELKRE-GVEGIVTGAIASRYQKSRIERICE 109 (218)
T ss_pred ----hHH-----------------------------HHH-----HHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHH
Confidence 000 011 22333344454 999999999999877766666652
Q ss_pred CCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 269 GKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 269 GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
..++.++.||..+++.|+..-....|+..+..
T Consensus 110 ----------------~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~ 141 (218)
T TIGR03679 110 ----------------ELGLKVFAPLWGRDQEEYLRELVERGFRFIIV 141 (218)
T ss_pred ----------------hCCCeEEeehhcCCHHHHHHHHHHCCCEEEEE
Confidence 23578999999999999999999999887653
No 73
>PRK13795 hypothetical protein; Provisional
Probab=98.87 E-value=4.3e-08 Score=110.19 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=100.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+++|+|+||||+||+|||+++.+.+ .++.++|+|+|.. + + ++.++++++++ |++++++..++
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~---------~~~~vvfiDTg~e--f-p----et~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL---------KDFKAFFNNTGLE--F-P----ETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC---------CCcEEEEEeCCCC--C-H----HHHHHHHHHHHHcCCcEEEEcccH
Confidence 4689999999999999999998632 2367899999962 2 1 35677888877 99999988764
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc--CCCeEEeccCcchhHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL--NCTKIFTAETQTDLATKII 263 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l--g~~~V~tGh~~dDlA~~~L 263 (521)
.|.... ..+ +++ .. ....-|..++..-+.++.+++ +....++|-..++-..+..
T Consensus 307 ~f~~~~-~~~----g~P----~~---------------~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~ 362 (636)
T PRK13795 307 AFWRAV-EKF----GPP----AR---------------DYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAK 362 (636)
T ss_pred hHHHhh-hcc----CCC----cc---------------ccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhh
Confidence 332110 011 111 00 012234555666666666655 2246788988887665432
Q ss_pred HHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 264 ANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 264 ~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
... +.. +....+...+.|+.+|+..||..|...+++|+.
T Consensus 363 ~~~-------~~~-----~~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 363 SPR-------VWR-----NPWVPNQIGASPIQDWTALEVWLYIFWRKLPYN 401 (636)
T ss_pred Ccc-------ccc-----CCCCCCcEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 111 100 111234567899999999999999999999964
No 74
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.8e-09 Score=94.18 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=99.3
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc-c
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ-A 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e-v 186 (521)
+|-|.|||||||+..+++|.+ +||+|..|+|+.|... +++.+++.++ |||+.++.|+. +
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~k---------lgyev~LVTvnFGv~d---------~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDK---------LGYEVELVTVNFGVLD---------SWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHH---------hCCCcEEEEEEecccc---------chhhHHHHHHHhCCCcceeccCHHH
Confidence 577899999999999999875 7999999999999753 3455666665 99999999985 2
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
.+.. .+... ..+.| ...++.+..+.+..+|-. .++.|+-|...||-.-++--.-
T Consensus 64 le~A-~em~i-edg~P-----------------------~~aIq~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~~~ 117 (198)
T COG2117 64 LEDA-VEMII-EDGYP-----------------------RNAIQYIHEMALEALASR-EVDRIADGTRRDDRVPKLSRSE 117 (198)
T ss_pred HHHH-HHHHH-hcCCC-----------------------chHHHHHHHHHHHHHHHH-HHHHHcCCCcccccCccccHHH
Confidence 2110 00000 11111 123567778888888877 7888999988887543221100
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHH-CCCC
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIF-NDLS 312 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~-~~L~ 312 (521)
+ .++ ..|. +|..++||..+..+-|...+.. +.+.
T Consensus 118 ~----------qSL-EdR~-nv~Yi~PL~G~G~kti~~Lv~~~f~~e 152 (198)
T COG2117 118 A----------QSL-EDRL-NVQYIRPLLGLGYKTIRRLVSAIFILE 152 (198)
T ss_pred H----------hhH-HHhc-CceeecccccccHHHHHHHHHHHeeee
Confidence 0 112 1233 4889999999999999887655 3443
No 75
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.83 E-value=2e-08 Score=101.09 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=101.8
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
.+++++|||+||+|+|||+.+.. ..+.++|+|.|.. + .++.+.+.++.+ |+++.+...+..+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~---------~~~~vif~DTg~~--f-----~Et~~~~d~~~~~~~~~l~~~~~~~~~ 104 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAF---------PDFPVIFLDTGYH--F-----PETYEFRDRLAEEYGLDLKVYRPDDEV 104 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhc---------CCCcEEEEeCCCc--C-----HHHHHHHHHHHHHcCCeEEEecCccch
Confidence 48999999999999999998743 2377899999973 2 246777777776 8888877766432
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
... ..+... +. .++ ..+ ..|...+-.-|.++-++++.+.+++|...++...
T Consensus 105 ~~~--~~~~~~--~~----------------~~~-~~r-~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~------- 155 (261)
T COG0175 105 AEG--EKYGGK--LW----------------EPS-VER-WCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPT------- 155 (261)
T ss_pred hhh--hhcccC--CC----------------CCC-cch-hhhhhHhhhhHHHHHhhcCCceEEEecccccccc-------
Confidence 211 011100 00 011 122 1345666677777778888899999987766433
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
| +.++.. .+ +...++...+.||.+++..||+.|...++||+.
T Consensus 156 --R-ak~~~~-~~-~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~n 197 (261)
T COG0175 156 --R-AKLPVV-SF-DSEFGESIRVNPLADWTELDVWLYILANNLPYN 197 (261)
T ss_pred --c-ccCcee-cc-ccCcCCeEEEcchhcCCHHHHHHHHHHhCCCCC
Confidence 2 111110 11 111224778999999999999999999999964
No 76
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.79 E-value=1.7e-07 Score=100.43 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=103.7
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+.+.+|+|||||||+++|+|+.+++..-......-.++|++.|.|...+...+-.++.++.++..++ |+|+.+.-+..
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v~P 92 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRLTP 92 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4568999999999999999998876432111112357788889997322111123345566666666 88877654432
Q ss_pred ccCCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHH----HHHHHHHHhcCCCeEEeccCcchhHH
Q psy3867 186 ALEPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQ----NLLLQAAKKLNCTKIFTAETQTDLAT 260 (521)
Q Consensus 186 vf~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~----~lL~~~A~~lg~~~V~tGh~~dDlA~ 260 (521)
-..... ...++ .+.+.+ .+..++|. ..+|. +++..+.++.|...+++|...++-+.
T Consensus 93 ~~~~~Fwv~liG--rG~P~P--~~~~RWCT---------------~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~ 153 (447)
T TIGR03183 93 EIKDTFWVNLIG--KGYPAP--RQKFRWCT---------------DRLKISPSNTFIRDVVAANGEVILVLGTRKAESQA 153 (447)
T ss_pred CcchHHHHHHhc--CCCCCC--CCCCCccC---------------hHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHH
Confidence 111100 01111 222210 01112211 23332 33445555678889999998887776
Q ss_pred HHHHHHhcCCCCCCCCCCcCCC-CCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 261 KIIANISLGKGAHVPLDVGFSD-DRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 261 ~~L~nl~~GrG~~l~~~~~~~d-~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+.-. +.+-.+..... .+.. ....+..+++|+.+|+..||+.|....++|+.
T Consensus 154 RA~~-m~k~e~~~~r~--~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 154 RAAV-MEKHESGSLRD--RLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWG 205 (447)
T ss_pred HHhh-hhhhccccccc--cccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCC
Confidence 5442 21101111100 0101 11235678999999999999999999988763
No 77
>PRK06850 hypothetical protein; Provisional
Probab=98.77 E-value=3.1e-07 Score=99.54 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+..++|+|||||||+++|+++.+++.+-......-.++|++.|.|.-.+....-..+.++.++..++ |+|+++.-+..
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~~~~v~P 113 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPITPHKLTP 113 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceEEEeeCC
Confidence 4568999999999999999998876431111112257888889986322111112345566666666 88887644432
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHH----HHHHHHHHhcCCCeEEeccCcchhHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQ----NLLLQAAKKLNCTKIFTAETQTDLATK 261 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~----~lL~~~A~~lg~~~V~tGh~~dDlA~~ 261 (521)
-........+. ..+.|.+ .+..++|. ..+|- +++..+.+++|-..+++|...++-+.+
T Consensus 114 ~~~~sFwv~li-GrG~P~P--s~~~RWCT---------------~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~R 175 (507)
T PRK06850 114 KINDTFWVNLI-GKGYPAP--RRKFRWCT---------------ERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAAR 175 (507)
T ss_pred CcchhHHHHHh-cCCCCCC--CCCCccCC---------------cHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHH
Confidence 11100000001 1223211 11112221 12332 233344456677889999888877665
Q ss_pred HHHHHhcC-CCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 262 IIANISLG-KGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 262 ~L~nl~~G-rG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
.-.--..+ .+..+... ....+..++.|+.+|+..||+.|....++|+.
T Consensus 176 A~~m~~~~~~~~rl~~~-----~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g 224 (507)
T PRK06850 176 AQVMAKHEIEGSRLSRH-----TTLPNAFVYTPIEDWSNDDVWKYLLQWENPWG 224 (507)
T ss_pred HhhhhhhcccCcceeec-----cCCCCcEEEeChHhCCHHHHHHHHHhcCCCCC
Confidence 43211111 11111110 01234568999999999999999999888763
No 78
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.75 E-value=3.7e-08 Score=103.34 Aligned_cols=156 Identities=18% Similarity=0.186 Sum_probs=91.3
Q ss_pred EEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcccccC
Q psy3867 112 LVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQALE 188 (521)
Q Consensus 112 LVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~evf~ 188 (521)
+||||||.||++++..|++ +.+++|+++++|.|.. . ++++.+++.+. |. +++++++.+.|-
T Consensus 1 VLAySGGLDTS~~l~~L~e--------~~~~~Via~~aDlGq~----~----~d~~~i~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKE--------EGGYEVIAVTADLGQP----D----EDLEAIEEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp EEE--SSHHHHHHHHHHHH--------TTTEEEEEEEEESSST---------S-HHHHHHHHHHHT-SEEEEEE-HHHHH
T ss_pred CeeeCCChHHHHHHHHHHh--------hcCceEEEEEEECCCc----H----HHHHHHHHHHHhcCCceeeecchHHHHH
Confidence 6899999999999999986 2358999999999962 1 13555777665 86 999999987553
Q ss_pred Cchh-hhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCc--chhHHHHHHH
Q psy3867 189 PDNM-KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQ--TDLATKIIAN 265 (521)
Q Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~--dDlA~~~L~n 265 (521)
.... +..... .. +.. ++ - +.+ .+.|.+.-+.+.++|++.|+++|+-|-+. +|+...-+.-
T Consensus 65 ~~~i~~aI~an--A~---Yeg--~Y----p-L~t-----sl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~ 127 (388)
T PF00764_consen 65 EDYIFPAIKAN--AL---YEG--RY----P-LST-----SLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSI 127 (388)
T ss_dssp HHTHHHHHHTT-------BTT--TB-------CC-----CCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHH--HH---hCC--Cc----c-ccc-----cchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHH
Confidence 1110 111100 00 000 00 0 000 13467788888899999999999999543 4544322221
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCC--CCHHHHHHHHHHCCCCceec
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRD--FSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd--~~kkEI~~Ya~~~~L~~~~~ 316 (521)
.+. ..+++++-|.|+ ++++|...|++.+|||...+
T Consensus 128 ~al----------------~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~ 164 (388)
T PF00764_consen 128 RAL----------------APELKVIAPWRDWEFSREEEIEYAKKHGIPVPVT 164 (388)
T ss_dssp HHH----------------STTSEEE-GGGHHHHHHHHHHHHHHHTT----SS
T ss_pred HHh----------------CcCCcEecccchhhhhHHHHHHHHHHcCCCCCCC
Confidence 111 246889999997 57889999999999986554
No 79
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.74 E-value=1.9e-07 Score=96.49 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
..+.+..-++..+++.- ..++|+|++|||+||++++.++.+.+. ..++.+++++.+.. +. .+.
T Consensus 15 ~~e~i~~~l~~~V~~~~---~~~~VvVgLSGGIDSSvvaaLa~~a~g-------~~~v~av~~~~~~s---~~----~e~ 77 (326)
T PRK00876 15 EAERIRAAIREQVRGTL---RRRGVVLGLSGGIDSSVTAALCVRALG-------KERVYGLLMPERDS---SP----ESL 77 (326)
T ss_pred HHHHHHHHHHHHHHHHc---CCCCEEEEccCCHHHHHHHHHHHHhhC-------CCcEEEEEecCCCC---Ch----HHH
Confidence 44455555555555521 123799999999999999999876431 14678888886531 11 245
Q ss_pred HHHHHHhc--cCCEEEEEcccccCCc------------hhhhhhcc--cCCchhhhchhhhhhh--hh----------hc
Q psy3867 167 AQIATAMK--YFDSYFTCLEQALEPD------------NMKLYTDV--AELPLEQFAKDSEINK--MF----------QT 218 (521)
Q Consensus 167 ~~v~~~~e--g~p~~iv~l~evf~~~------------~~~~~~~~--~~~~~~~~~~~~~l~~--l~----------~s 218 (521)
+.++.+++ |++++++++..++..- ..+.|... ..+..........+.. +. ..
T Consensus 78 ~~A~~lA~~LGi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (326)
T PRK00876 78 RLGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKR 157 (326)
T ss_pred HHHHHHHHHcCCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccc
Confidence 67888887 9999999998754210 00111100 0000000000000000 00 00
Q ss_pred cC-----CCccHHHHHHHHHHHHHHHHHHhcCCCeEEecc-CcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-eeee
Q psy3867 219 VT-----TLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAE-TQTDLATKIIANISLGKGAHVPLDVGFSDDRTGD-IITL 291 (521)
Q Consensus 219 ~~-----s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh-~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~-v~ii 291 (521)
++ ..-+.+.+-.++|..+|..+|...|+ +++|. |.++. .. ||... +|| .--+
T Consensus 158 ~~~~~~~~~~~~~N~~aR~Rm~~ly~~A~~~~~--lVlgT~NksE~--------~~----------Gy~Tk-yGD~~~d~ 216 (326)
T PRK00876 158 LPANAYLQIVAATNFKQRTRKMVEYYHADRLNY--AVAGTPNRLEY--------DQ----------GFFVK-NGDGAADL 216 (326)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--EEEcCCchhhH--------hh----------CCeee-ecCccccc
Confidence 00 00134566788999999999999986 55552 22221 11 22221 222 3348
Q ss_pred ecCCCCCHHHHHHHHHHCCCCc
Q psy3867 292 RPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 292 RPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
-||.++.|.||...+++.|+|-
T Consensus 217 ~Pi~~L~Kt~V~~La~~l~vP~ 238 (326)
T PRK00876 217 KPIAHLYKTQVYALAEHLGVPE 238 (326)
T ss_pred hhccCCCHHHHHHHHHHhCCCH
Confidence 8999999999999999999994
No 80
>PRK13981 NAD synthetase; Provisional
Probab=98.64 E-value=5.7e-07 Score=99.59 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
+.+.+..-++..+.+.+ .++++|++|||.||++++.++.+.+. ..++.++++..... +. .+.
T Consensus 263 ~~~~l~~~l~~~~~~~~----~~~~vvglSGGiDSa~~a~la~~a~g-------~~~v~~~~~p~~~~---~~----~~~ 324 (540)
T PRK13981 263 DYRALVLGLRDYVRKNG----FPGVVLGLSGGIDSALVAAIAVDALG-------AERVRAVMMPSRYT---SE----ESL 324 (540)
T ss_pred HHHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHHHhC-------cCcEEEEECCCCCC---CH----HHH
Confidence 33444555555555543 35899999999999999999877442 13577777764321 11 245
Q ss_pred HHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc
Q psy3867 167 AQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL 244 (521)
Q Consensus 167 ~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l 244 (521)
+.++++++ |+++++++++++|.. +.. .+...+.........+.+-.++|..+|..+|.++
T Consensus 325 ~~a~~~a~~lgi~~~~i~i~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~ 386 (540)
T PRK13981 325 DDAAALAKNLGVRYDIIPIEPAFEA-----FEA-------------ALAPLFAGTEPDITEENLQSRIRGTLLMALSNKF 386 (540)
T ss_pred HHHHHHHHHcCCeEEEEECHHHHHH-----HHH-------------HhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhcc
Confidence 66778887 999999999975522 110 0001111111123456677899999999999999
Q ss_pred CCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-eeeeecCCCCCHHHHHHHHHHCC
Q psy3867 245 NCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGD-IITLRPLRDFSSKEVIYYNIFND 310 (521)
Q Consensus 245 g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~-v~iiRPLrd~~kkEI~~Ya~~~~ 310 (521)
|+-.+-||+-. ++ +.| |... +|+ .--+.|+.+++|.+|...+++.+
T Consensus 387 ~~lvlgt~n~s-E~--------~~G----------y~t~-~GD~~~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 387 GSLVLTTGNKS-EM--------AVG----------YATL-YGDMAGGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred CCEEEeCCccC-HH--------HcC----------CeEe-cCCcccCccccCCCCHHHHHHHHHHHH
Confidence 98666666532 22 222 2111 121 23488999999999999999987
No 81
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.58 E-value=2.2e-06 Score=86.15 Aligned_cols=171 Identities=12% Similarity=0.058 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccc--cceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKR--ILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr--~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
+.+.+-++..+++.+ .+.++|++|||.||++.+.+..+++......+ ....+.++..-... .. +.
T Consensus 23 ~~i~~~L~~~l~~~g----~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~--~~-------~~ 89 (268)
T PRK00768 23 RRRVDFLKDYLKKSG----LKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV--QA-------DE 89 (268)
T ss_pred HHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCC--cC-------CH
Confidence 444444455555543 46899999999999999998887664211001 11233333333221 11 22
Q ss_pred HHHHHHhc--cC-CEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 167 AQIATAMK--YF-DSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 167 ~~v~~~~e--g~-p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
+.++.+++ |+ ++.+++++.+++. +... +.. ...-.+..+.+.+..++|..+|+.+|..
T Consensus 90 ~da~~la~~lgi~~~~~i~I~~~~~~-----~~~~-------------l~~-~~~~~~~~a~~NiqARlRm~~Ly~~An~ 150 (268)
T PRK00768 90 DDAQDALAFIQPDRVLTVNIKPAVDA-----SVAA-------------LEA-AGIELSDFVKGNIKARERMIAQYAIAGA 150 (268)
T ss_pred HHHHHHHHhcCCCeeEEEECHHHHHH-----HHHH-------------Hhh-cCCCchhhHHHHHHHHHHHHHHHHHHcc
Confidence 34555666 88 7999999865422 1100 000 0000112245677789999999999999
Q ss_pred cCCCeEEecc-CcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-eeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 244 LNCTKIFTAE-TQTDLATKIIANISLGKGAHVPLDVGFSDDRTGD-IITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 244 lg~~~V~tGh-~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~-v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
.|+ +++|. |.++. ..| |... +|+ .--+-|+.+++|.||+..+++.++|
T Consensus 151 ~~~--lvlgT~N~sE~--------~~G----------y~Tk-yGD~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 151 TGG--LVVGTDHAAEA--------VTG----------FFTK-FGDGGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred CCC--EEEcCCcccHH--------HhC----------ceec-cCCccccchhhcCCcHHHHHHHHHHhCCC
Confidence 886 55553 23222 122 2211 222 2348899999999999999999999
No 82
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.42 E-value=1.2e-05 Score=80.91 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=98.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
++++|++|||.||++.+.+..+++.+ ......+.++....+..... ..+.+...++ |+.+..+++.++
T Consensus 26 k~~VlGiSGGiDSa~~~~La~~A~~~---~~~~~~~~av~mP~~~~~~~-------~~~da~~~~~~lg~~~~~i~I~~~ 95 (268)
T COG0171 26 KGVVLGLSGGIDSALVLALAVRALGK---GDSKENVLAVRLPYGYTVQA-------DEEDAQDLAEALGIDYKEINIKPA 95 (268)
T ss_pred CCeEEEcccChHHHHHHHHHHHHhcc---ccchhheeeEECCCCCcccc-------CHHHHHHHHHHhCCceEEEecHHH
Confidence 57999999999999999999887753 11122366776666521112 3445666666 899999998865
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhc-cCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQT-VTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s-~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
+. .|... +...+.. .....+.+.+-.++|..+++.+|.++|.=.|=|||- +|
T Consensus 96 v~-----~~~~~-------------~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~----sE----- 148 (268)
T COG0171 96 VD-----AFLKK-------------LLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNK----SE----- 148 (268)
T ss_pred HH-----HHHHh-------------hhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCcH----HH-----
Confidence 42 22100 0000000 011224566778899999999999888644444432 22
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
++.| +.+-+.| ..--+.|+.++.|.+|...++..++|.
T Consensus 149 ~~~G------y~TkyGD----g~~d~~Pi~~L~KtqV~~La~~l~ipe 186 (268)
T COG0171 149 LALG------YFTKYGD----GAVDINPIADLYKTQVYALARHLGIPE 186 (268)
T ss_pred HhcC------ceecccC----cccChhhhcCCcHHHHHHHHHHcCCCH
Confidence 1222 1122211 122378999999999999999999994
No 83
>KOG1622|consensus
Probab=98.41 E-value=2.9e-07 Score=95.93 Aligned_cols=166 Identities=20% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
..+|++++|||.||+|+..++++++.. -+++++|||.|... ..+.+.+++-.. |+++++++..+
T Consensus 230 ~~~Vl~~vSGgvdStV~a~Ll~~alg~-------~R~~ai~vdNG~mr-------k~Ea~~V~~tl~~lgi~i~v~~as~ 295 (552)
T KOG1622|consen 230 DYKVLVAVSGGVDSTVCAALLRRALGP-------DRVHAIHVDNGFMR-------KKEAEQVEKTLVYLGIPITVVDASE 295 (552)
T ss_pred ccceEEEecCCchHHHHHHHHHHhhCC-------CceEEEEecccchh-------hhHHHHHHHHHHHcCCceEEeechH
Confidence 568999999999999999999986631 47889999999742 123334544443 99999998875
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc----CCC--eEEeccCcchhH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL----NCT--KIFTAETQTDLA 259 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l----g~~--~V~tGh~~dDlA 259 (521)
-|-.. -.+. .+++.-+. ++...--+++...|.++ +-. .++-|.-.-|+.
T Consensus 296 ~f~s~-------L~~~-----~dPE~KRk-------------iIG~tfikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~i 350 (552)
T KOG1622|consen 296 TFLSK-------LKGV-----TDPEEKRK-------------IIGRTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLI 350 (552)
T ss_pred HHHHh-------hccc-----CCHHHhce-------------ecccceeeeCcHHHHHhhhccCccceeeecccccchhh
Confidence 33110 0000 01111111 11111112222333332 222 677777777776
Q ss_pred HHHHHHHhcCCCC--CCCCCCcCCC-CC-C-CCeeeeecCCCCCHHHHHHHHHHCCCCcee
Q psy3867 260 TKIIANISLGKGA--HVPLDVGFSD-DR-T-GDIITLRPLRDFSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 260 ~~~L~nl~~GrG~--~l~~~~~~~d-~~-~-~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~ 315 (521)
+... ..|.|. .+.....+.. .+ . .--+++.||+++.++|++...+.+|+|...
T Consensus 351 eS~s---~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~~L 408 (552)
T KOG1622|consen 351 ESAS---VYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPESL 408 (552)
T ss_pred hhcc---ccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHhhhhcCCchhh
Confidence 6432 334331 1211111110 00 1 112789999999999999999999998654
No 84
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.37 E-value=8.8e-07 Score=73.39 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 233 RQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 233 R~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
+++.+.++|+++|+++|++|||.+|.++..+.+
T Consensus 36 ~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~ 68 (86)
T cd01984 36 FVRILKRLAAEEGADVIILGHNADDVAGRRLGA 68 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCchhhhhhccCc
Confidence 445566889999999999999999999988754
No 85
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.23 E-value=2.9e-05 Score=76.24 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=82.9
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
|+++.|||||||+..|+.+.+ . ++|..+..-.....+ +..-.....+.++.+++ |+|++.+....
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~---------~-~~V~~L~~~~~~~~~-s~~~h~~~~~~~~~qA~algiPl~~~~~~~-- 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALE---------E-HEVISLVGVFSENEE-SYMFHSPNLHLTDLVAEAVGIPLIKLYTSG-- 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHH---------c-CeeEEEEEEcCCCCC-ccccccCCHHHHHHHHHHcCCCeEEEEcCC--
Confidence 689999999999999998865 1 454444332111000 00000113455777777 99998776542
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
.|. +.... |.+.+++.|++.|++|+-..+--.+-+.+++
T Consensus 69 ------~~e------------------------------~~~~~-----l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc 107 (222)
T TIGR00289 69 ------EEE------------------------------KEVED-----LAGQLGELDVEALCIGAIESNYQKSRIDKVC 107 (222)
T ss_pred ------chh------------------------------HHHHH-----HHHHHHHcCCCEEEECccccHHHHHHHHHHH
Confidence 010 00111 2233366699999999987655455555665
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
.. -++..+.||-.....++.... ..|+..+..
T Consensus 108 ~~----------------~gl~~~~PLW~~d~~~l~e~i-~~Gf~aiIv 139 (222)
T TIGR00289 108 RE----------------LGLKSIAPLWHADPEKLMYEV-AEKFEVIIV 139 (222)
T ss_pred HH----------------cCCEEeccccCCCHHHHHHHH-HcCCeEEEE
Confidence 42 246789999999998887654 577776553
No 86
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.23 E-value=4e-06 Score=83.95 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=73.6
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTC 182 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~ 182 (521)
+..+.+|.+++|||.||++++.++.+.. ...+.+++++.+.. +. + +...++.+++ |++++++.
T Consensus 12 ~~~~~~v~~~LSGGlDSs~va~~~~~~~--------~~~~~~~~~~~~~~-~~--~----e~~~a~~~a~~l~~~~~~~~ 76 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLL--------PEPVKTFSIGFGFE-GS--D----EREYARRVAEHLGTEHHEVE 76 (269)
T ss_pred hccCCceEEeecccHHHHHHHHHHHHhh--------CCCCceEEEeeCCC-CC--C----hHHHHHHHHHHhCCcceEEE
Confidence 4456799999999999999999987621 11255666665531 11 1 2455777776 99999998
Q ss_pred cccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHH
Q psy3867 183 LEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLAT 260 (521)
Q Consensus 183 l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~ 260 (521)
++.. .+... +..+..... .+...+..+....+.+.|++.|+..|++|+.+|++..
T Consensus 77 ~~~~-------~~~~~-------------~~~~~~~~~---~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~ 131 (269)
T cd01991 77 FTPA-------DLLAA-------------LPDVIWELD---EPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELFG 131 (269)
T ss_pred cCHH-------HHHHH-------------HHHHHHHhC---CCCCCcHHHHHHHHHHHHHHhCCEEEEecCCcccccc
Confidence 7631 00000 000000000 0111233466677889999999999999999998753
No 87
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.20 E-value=2.2e-05 Score=84.75 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=91.9
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
.++++++|||.|+ +|||++.+ .+..+.|++||.|...+ ++.+++.++.+ |++++++.-+.
T Consensus 116 ~~iavasSG~eds-vLlhl~~~---------~~~~ipV~flDTG~lFp-------ETy~~~d~v~~~ygl~l~~~~p~~- 177 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHL---------TGRPFRVFSLDTGRLNP-------ETYRFFDAVEKQYGIRIEYMFPDA- 177 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHH---------hCCCCcEEEecCCCCCH-------HHHHHHHHHHHHhCCceEEECCCc-
Confidence 4799999988776 68898875 23456789999997422 35666666655 88877663221
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhH-HHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLA-TKIIAN 265 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA-~~~L~n 265 (521)
... ..+....+.. +| ..+.+...|+..|-.-|.++.+ |++..++|-..++-. .+.-.
T Consensus 178 ~~~---~~~~~~~G~~------------~~----~~~~~~~CC~irKVePL~raL~--~~~awitG~Rr~Qs~~tRa~~- 235 (463)
T TIGR00424 178 VEV---QALVRSKGLF------------SF----YEDGHQECCRVRKVRPLRRALK--GLKAWITGQRKDQSPGTRSEI- 235 (463)
T ss_pred chH---HHHHHhcCcc------------cC----CcCChHHHhhHHhHHHHHHHHH--hCCcEEeeeccccCccccccC-
Confidence 000 0000000100 00 0012334456656666666555 556899997665532 11110
Q ss_pred HhcCCCCCCCCCCcCC--CCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 266 ISLGKGAHVPLDVGFS--DDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~--d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
..+.++..+. +...+++..+.||.+|+..||+.|.+.++||+.
T Consensus 236 ------~~ve~d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~n 280 (463)
T TIGR00424 236 ------PVVQVDPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVN 280 (463)
T ss_pred ------CcccccccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCC
Confidence 1111221111 011234678999999999999999999999964
No 88
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.17 E-value=0.00011 Score=74.95 Aligned_cols=186 Identities=14% Similarity=0.090 Sum_probs=101.1
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc----cCC---EEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK----YFD---SYF 180 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e----g~p---~~i 180 (521)
-++|.|+|||||||.+||||+.+...+.. .-++.|+|||.-. .+ +.+++.|.+..+ -++ |..
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~----~~~i~VlfiD~E~--QY-----s~TidyV~em~~~~~dv~~~~yWvc 95 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENG----RDKISVLFIDWEA--QY-----SCTIDYVQEMRESYHDVIETFYWVC 95 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhC----CCceEEEEEcchh--hh-----hhHHHHHHHHHhcccCccccceEEE
Confidence 46899999999999999999988443321 1158999999532 23 235667777654 234 233
Q ss_pred EEcccccCCchhh--hhhcc--------cCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy3867 181 TCLEQALEPDNMK--LYTDV--------AELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIF 250 (521)
Q Consensus 181 v~l~evf~~~~~~--~~~~~--------~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~ 250 (521)
+++...-+++... .+--+ ..+|.. ....+ ...|.-..-.-.-+++. ..+..=++++.+..+++
T Consensus 96 LPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~-~ii~d--~~~F~Fyr~~M~feeFv----~~F~~Wl~~~~~~ta~L 168 (407)
T COG3969 96 LPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQ-VAITD--PAFFPFYRYGMTFEEFV----PAFAAWLSQKRPATAVL 168 (407)
T ss_pred eehhcccchhhcCceeecCCCCCccccccCCchh-ccccC--CCcccceeccccHHHHH----HHHHHHHhccCCceEEE
Confidence 3443211111000 00000 111100 00000 00111111111233333 33344466777889999
Q ss_pred eccCcchhHHHHHHHHhcCCCCCCC---CCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 251 TAETQTDLATKIIANISLGKGAHVP---LDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 251 tGh~~dDlA~~~L~nl~~GrG~~l~---~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
+|-.+++..-+++.-..+-++..-. |-+.. ...+.+--+.|+.|+.-.+|..+...++.++
T Consensus 169 vGiRadESlNRf~ai~~~~k~~~~~~~pWtt~~--~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~y 232 (407)
T COG3969 169 VGIRADESLNRFNAIARKEKLRFADDKPWTTRI--FPNGHVWTFYPIYDWKVEDIWTANAKFSYAY 232 (407)
T ss_pred EeecchhhHHHHHHHHHhhhcccCCCCCceeee--cCCCceEEEEecccchHHHHHHHHHhcCCcc
Confidence 9999998877776544444433111 22211 1234467789999999999999888777654
No 89
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.13 E-value=3.2e-05 Score=76.12 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT 171 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~ 171 (521)
++.|++++.+. ++.+.+|.+.+|||.||++++.++.+ ..+..+..++++.+.. .. . +...+++
T Consensus 3 r~~l~~av~~r--l~~~~~i~~~LSGGlDSs~i~~~~~~--------~~~~~~~~~t~~~~~~-~~--~----e~~~a~~ 65 (255)
T PF00733_consen 3 RELLEEAVARR--LRSDKPIGILLSGGLDSSAIAALAAR--------QGGPPIKTFTIGFEDD-DY--D----EREYARK 65 (255)
T ss_dssp HHHHHHHHHHH--CGCTSEEEEE--SSHHHHHHHHHHHH--------TCCSEEEEEEEECSSC-C--------HHHHHHH
T ss_pred HHHHHHHHHHH--HhcCCCEEEECCCChhHHHHHHHHHH--------hhCCceeEEEEEcCCC-cc--h----hHHHHHH
Confidence 44555555542 34577999999999999999999976 1356778888876642 11 1 3445677
Q ss_pred Hhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeE
Q psy3867 172 AMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKI 249 (521)
Q Consensus 172 ~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V 249 (521)
+++ |++++++.++.. .+.. .+........... .......+-...+.+.|++.|.+.|
T Consensus 66 va~~~~~~~~~~~~~~~-------~~~~-------------~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~a~~~~~~~~ 124 (255)
T PF00733_consen 66 VARHLGLEHHEIELDPE-------DLLD-------------NLEDIIWRLDGPS-PLDDPNSLPLYLLARLARENGIRVL 124 (255)
T ss_dssp HHHHHT-EEEEEEE-HH-------HHHH-------------HHHHHHHHHT----HHHHHHHHHHHHHHHHHCHTTBSEE
T ss_pred Hhcccccccceeeechh-------hHHH-------------hHHHHHHHHhCCc-ccccccccHHHHHHHhhcccceeEE
Confidence 776 999998887741 0100 0000000000000 0012334445556778888999999
Q ss_pred EeccCcchhH
Q psy3867 250 FTAETQTDLA 259 (521)
Q Consensus 250 ~tGh~~dDlA 259 (521)
++|+-+|.+.
T Consensus 125 ltG~GgDelf 134 (255)
T PF00733_consen 125 LTGQGGDELF 134 (255)
T ss_dssp E--TTHHHHH
T ss_pred Eecccccccc
Confidence 9999988754
No 90
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=98.11 E-value=3e-05 Score=74.46 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=87.9
Q ss_pred CccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhh
Q psy3867 118 SHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLY 195 (521)
Q Consensus 118 G~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~ 195 (521)
|.||+|||||+.+. ..++.++|||.|.. + .++.+++.++.+ |++++++..+.. .. ..+
T Consensus 2 ~~~s~Vll~L~~~~---------~~~~~vifvDTg~~--F-----pET~~~~d~~~~~~~l~i~~~~~~~~-~~---~~~ 61 (191)
T TIGR02055 2 GAEDVVLVDLAAKV---------RPDVKVFFLDTGRL--F-----KETYETIDQVRERYDILIDVLSPPPL-TV---EEQ 61 (191)
T ss_pred ChHHHHHHHHHHhc---------CCCCcEEEecCCCC--C-----HHHHHHHHHHHHHhCCceEEEcCCcc-cH---HHH
Confidence 88999999999873 33567899999973 2 235667777766 888777754310 00 000
Q ss_pred hcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCC
Q psy3867 196 TDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVP 275 (521)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~ 275 (521)
....+++. + . ...+...|..++..-|.++.+. .+.+++|...++-..+....+ +
T Consensus 62 ~~~~G~~~--------~---~-----~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~~~-------~- 115 (191)
T TIGR02055 62 VKEYGLNL--------F---Y-----RSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRAQAPF-------L- 115 (191)
T ss_pred HHHcCccc--------c---c-----ccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhcCCce-------e-
Confidence 00001100 0 0 0013345677777777776654 578899987776544321111 0
Q ss_pred CCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 276 LDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 276 ~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.. +... ++..++||.+++..||..|.+.++||+
T Consensus 116 ---~~-~~~~-~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 116 ---EI-DEAF-GLVKINPLADWTSEDVWEYIADNELPY 148 (191)
T ss_pred ---ee-cCCC-CeEEEEecccCCHHHHHHHHHHcCCCC
Confidence 11 1112 256789999999999999999999985
No 91
>KOG1706|consensus
Probab=98.08 E-value=1.9e-05 Score=79.13 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=100.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--c-CCEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--Y-FDSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g-~p~~iv~l~ 184 (521)
..+|++|+|||.|-++.|.+|++ .|+++++..-|-|.. ++++.+++-+. | -.+.+.++.
T Consensus 5 ~~~vVLAySGgLDTscil~WLke---------qGyeViay~AnvGQ~---------edfe~ar~kAlk~Gakk~~~ed~~ 66 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKE---------QGYEVIAYLANVGQK---------EDFEEARKKALKSGAKKVVVEDVR 66 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHh---------cCceEEEeeccccch---------hhHHHHHHhhhhcCceEEEehhhh
Confidence 45899999999999888888876 489999988888751 24555666554 4 346666666
Q ss_pred cccCCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHH
Q psy3867 185 QALEPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKII 263 (521)
Q Consensus 185 evf~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L 263 (521)
+.|-.+. .+...... + +++ ++ ++. | .+.|....+...++|++.|+.+|.-|
T Consensus 67 ~eFvedfi~Pa~qs~a-~----YEd--~Y--LLG-----T---SlaRp~ia~~qv~va~~eg~~aVsHG----------- 118 (412)
T KOG1706|consen 67 EEFVEDFIWPALQSSA-L----YED--RY--LLG-----T---SLARPVIAKAQVDVAQREGAKAVSHG----------- 118 (412)
T ss_pred HHHHhhcchhhhhhcc-h----hhc--ee--eec-----c---ccccchhhhhhhhHHhhcCceeeecc-----------
Confidence 5432110 01100000 0 111 00 111 1 13344555556689999999999999
Q ss_pred HHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCC-------CCHHHHHHHHHHCCCCceecC
Q psy3867 264 ANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRD-------FSSKEVIYYNIFNDLSPVHVP 317 (521)
Q Consensus 264 ~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd-------~~kkEI~~Ya~~~~L~~~~~~ 317 (521)
+.|.|. ++.....|. +-..+++++-|+|. -..+++..|++.+|||...+|
T Consensus 119 ---cTGKGNDQvrFELt~y-sl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~ 176 (412)
T KOG1706|consen 119 ---CTGKGNDQVRFELTFY-SLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTP 176 (412)
T ss_pred ---cccCCCcceeeeeeee-ccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccC
Confidence 567774 444333332 22457999999986 257899999999999966543
No 92
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.00 E-value=3.1e-05 Score=84.36 Aligned_cols=132 Identities=12% Similarity=0.082 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+.+.|.+++++. +..+.+|.+.+|||.||++++.++.+... + ..+..++|+.+...+. . +...
T Consensus 236 e~l~~~l~~aV~~r--~~~~~~vg~~LSGGlDSs~iaa~a~~~~~-----~--~~~~~~t~~~~~~~~~--~----E~~~ 300 (467)
T TIGR01536 236 DELRSLLEDAVKRR--LVADVPVGVLLSGGLDSSLVAAIARREAP-----R--GPVHTFSIGFEGSPDF--D----ESPY 300 (467)
T ss_pred HHHHHHHHHHHHHH--hccCCceEEEecCChhHHHHHHHHHHhcC-----C--CCceEEEEecCCCCCC--C----hHHH
Confidence 45566666666552 33567899999999999999998875211 0 2455677765421122 1 2345
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++++ |++++++.+.+. .+.. .+..+...... +......+...++.+.|++.|+
T Consensus 301 A~~vA~~lg~~~~~i~~~~~-------~~~~-------------~~~~~v~~~~~---p~~~~~~~~~~~l~~~a~~~G~ 357 (467)
T TIGR01536 301 ARKVADHLGTEHHEVLFSVE-------EGLD-------------ALPEVIYHLED---PTTIRASIPLYLLSKLAREDGV 357 (467)
T ss_pred HHHHHHHhCCcCeEEECCHH-------HHHH-------------HHHHHHHhhCC---CCCCchHHHHHHHHHHHHhcCC
Confidence 677777 999999988631 0000 00000000000 1112234455677888999999
Q ss_pred CeEEeccCcchh
Q psy3867 247 TKIFTAETQTDL 258 (521)
Q Consensus 247 ~~V~tGh~~dDl 258 (521)
+.+++|+.+|++
T Consensus 358 ~vlltG~GaDEl 369 (467)
T TIGR01536 358 KVVLSGEGADEL 369 (467)
T ss_pred EEEEecCcchhc
Confidence 999999999885
No 93
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.89 E-value=0.00031 Score=69.05 Aligned_cols=135 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEE-EEE-eCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCA-IYI-DDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~-v~I-D~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
|+++.|||||||+..|+.+.+ . ++|.+ +++ ..+... +.- ..-..+.++.+++ |+|++.+....
T Consensus 2 k~~~l~SGGKDS~~al~~a~~---------~-~~v~~L~t~~~~~~~s-~~~--H~~~~~~~~~qA~algipl~~~~~~~ 68 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALK---------E-HEVISLVNIMPENEES-YMF--HGVNAHLTDLQAESIGIPLIKLYTEG 68 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHH---------h-CeeEEEEEEecCCCCc-ccc--cccCHHHHHHHHHHcCCCeEEeecCC
Confidence 578999999999999998865 2 44433 333 222100 000 0012345666776 99987654331
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
.+ ++... -|.++.++.|++.|++|+-..+--.+-+.+
T Consensus 69 --------~~------------------------------e~~~e-----~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~ 105 (223)
T TIGR00290 69 --------TE------------------------------EDEVE-----ELKGILHTLDVEAVVFGAIYSEYQKTRIER 105 (223)
T ss_pred --------Cc------------------------------cHHHH-----HHHHHHHHcCCCEEEECCcccHHHHHHHHH
Confidence 00 01111 122333455999999998766554455555
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
++.. -++..+.||-.....|+..=.-..|+..+..
T Consensus 106 v~~~----------------lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv 140 (223)
T TIGR00290 106 VCRE----------------LGLKSFAPLWHRDPEKLMEEFVEEKFEARII 140 (223)
T ss_pred HHHh----------------cCCEEeccccCCCHHHHHHHHHHcCCeEEEE
Confidence 5532 2477899999999999887777788887654
No 94
>PLN02309 5'-adenylylsulfate reductase
Probab=97.82 E-value=0.00031 Score=75.90 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=90.3
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
.++++++|||.|+ ||+||+.+ .+..+.|++||.|...+ ++.+++.++.+ |++++++.-+.
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~---------~~~~ipV~flDTG~lfp-------ETy~~~d~v~~~ygl~i~~~~P~~- 172 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHL---------TGRPFRVFSLDTGRLNP-------ETYRLFDAVEKHYGIRIEYMFPDA- 172 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHH---------hCCCCcEEEecCCCCCH-------HHHHHHHHHHHHhCCceEEECCCc-
Confidence 5799999966665 77788765 23345689999997422 36666766665 88887763221
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhH-HHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLA-TKIIAN 265 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA-~~~L~n 265 (521)
-. ...+....++.. | . .+.+...|+..|-.-|.++.+ |++..++|-..++-. .+.
T Consensus 173 ~~---~~~~~~~~g~~~------------~---~-~~~~~~Cc~irKVePL~raL~--~~~awitG~Rr~Qs~~~Ra--- 228 (457)
T PLN02309 173 VE---VQALVRNKGLFS------------F---Y-EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRA--- 228 (457)
T ss_pred ch---HHHHHHhcCccc------------c---c-cCChHHhhhhHhHHHHHHHHh--hCCEEEEeeccccCccccc---
Confidence 00 000000001000 0 0 012334455555555655554 457899996655422 110
Q ss_pred HhcCCCCCCCCCCcCCCC--CCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 266 ISLGKGAHVPLDVGFSDD--RTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~--~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
.-..+.++..+... ..+++..+.||.+|+..||+.|.+.++||+.
T Consensus 229 ----~l~~ve~d~~~~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~n 275 (457)
T PLN02309 229 ----EVPVVQVDPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVN 275 (457)
T ss_pred ----cCCeeeecccccccccCCCCeeEEcccccCCHHHHHHHHHHcCCCCC
Confidence 00112222211100 0234678999999999999999999999964
No 95
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.82 E-value=7.6e-05 Score=71.46 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=83.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhccCCEEEEEccccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQAL 187 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~iv~l~evf 187 (521)
+-+++||+|||.||++.+.+|+. .+ ++||.|... .+++-+ ++.+.+.+.. |.....+..+
T Consensus 60 ~~kiaVA~SGG~DSsas~iilR~---------~g-----~~v~p~t~~-Lp~~ir-~n~~~l~~~l-g~~p~yveed--- 119 (255)
T COG1365 60 KPKIAVAYSGGVDSSASAIILRW---------AG-----FTVDPGTAI-LPDHIR-RNKEELETLL-GEVPEYVEED--- 119 (255)
T ss_pred CceEEEEecCCcchHHHHHHHHh---------hc-----eeecccccc-CCHHHh-HHHHHHHHHH-ccCHHHHHHH---
Confidence 36899999999999999888764 23 566777531 222212 2222222222 3322222111
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHh
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANIS 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~ 267 (521)
..+.+.. .+ ...-.+|--|..+..+.....|++++.+.|++||-+ +
T Consensus 120 ---l~~i~kG-------------al-------nGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlL-----------s 165 (255)
T COG1365 120 ---LEDIEKG-------------AL-------NGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLL-----------S 165 (255)
T ss_pred ---HHHHHhh-------------hc-------cCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEcccc-----------c
Confidence 0011110 01 112245667878888888899999999999999743 3
Q ss_pred cCCCCCCCCCCcCCCCCCCCeeeeec-CCCCCHHHHHHHHHHCCCCc
Q psy3867 268 LGKGAHVPLDVGFSDDRTGDIITLRP-LRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 268 ~GrG~~l~~~~~~~d~~~~~v~iiRP-Lrd~~kkEI~~Ya~~~~L~~ 313 (521)
.|.|. + +. .++-+.+-=| +..+++.|++..+.++++..
T Consensus 166 ~G~~s-v-----y~--eD~i~rlnlPAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 166 TGYGS-V-----YR--EDGIFRLNLPAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred ccccc-e-----ec--cCCEEEEccHHHHhhCcHHHHHHHHhcCccc
Confidence 45431 1 11 1222333233 56789999999999999854
No 96
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=97.66 E-value=0.00039 Score=68.15 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=77.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEE-EEE-EeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC-AIY-IDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~-~v~-ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
|+++.|||||||+..|+.+.+ . +++. +++ +.++... +.... -..+.++.+++ |+|++.+.+..
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~---------~-~~v~~L~t~~~~~~~s-~~~H~--~~~~~~~~qA~algipl~~~~~~g 68 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALR---------Q-HEVVCLLTMVPEEEDS-YMFHG--VNIELIEAQAEALGIPLIEIPTSG 68 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHH---------T--EEEEEEEEEESTTT--SSS-S--TTGTCHHHHHHHHT--EEEEEE--
T ss_pred cEEEEEcCcHHHHHHHHHHHH---------h-CCccEEEEeccCCCCc-ccccc--cCHHHHHHHHHHCCCCEEEEEccC
Confidence 788999999999999988765 1 3443 333 3333221 00000 01334556666 99999887751
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
.- +.| .++ |.+..++++++.|++|+-..+--..-..+
T Consensus 69 ~~-----~~~-----------------------------~~~---------l~~~l~~~~v~~vv~GdI~~~~~r~~~e~ 105 (218)
T PF01902_consen 69 DE-----EDY-----------------------------VED---------LKEALKELKVEAVVFGDIDSEYQRNWVER 105 (218)
T ss_dssp -C-----CCH-----------------------------HHH---------HHHHHCTC--SEEE--TTS-HHHHHHHHH
T ss_pred cc-----chh-----------------------------hHH---------HHHHHHHcCCCEEEECcCCcHHHHHHHHH
Confidence 00 000 011 12333567799999998765444445566
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQT 342 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~Le~ 342 (521)
++.. -++..+.||-....+++..-.-..|+............++..--+.+.++++..|.+
T Consensus 106 vc~~----------------lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~ 166 (218)
T PF01902_consen 106 VCER----------------LGLEAVFPLWGRDREELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPE 166 (218)
T ss_dssp HHHH----------------CT-EEE-TTTT--HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHH
T ss_pred HHHH----------------cCCEEEecccCCCHHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHH
Confidence 6542 247889999999999997777777888765422111222222222344566666554
No 97
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=97.31 E-value=0.0056 Score=59.59 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=86.4
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE-EEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI-YIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v-~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
|+++.+||||||...+|.+.+ .|+++..+ ++-......+.. .--+...+..+++ |+|+......-.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~---------~G~eV~~Ll~~~p~~~dS~m~--H~~n~~~~~~~Ae~~gi~l~~~~~~g~ 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE---------EGHEVVYLLTVKPENGDSYMF--HTPNLELAELQAEAMGIPLVTFDTSGE 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH---------cCCeeEEEEEEecCCCCeeee--eccchHHHHHHHHhcCCceEEEecCcc
Confidence 678889999999999998764 46766544 332211000100 0013455666666 898776554421
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
. +. . .++ |.++-+.++++.|+.|+-+.+-=.+-+.++
T Consensus 71 ~----------e~-----------e-------------ve~---------L~~~l~~l~~d~iv~GaI~s~yqk~rve~l 107 (223)
T COG2102 71 E----------ER-----------E-------------VEE---------LKEALRRLKVDGIVAGAIASEYQKERVERL 107 (223)
T ss_pred c----------hh-----------h-------------HHH---------HHHHHHhCcccEEEEchhhhHHHHHHHHHH
Confidence 0 00 0 011 223334566999999988777666667777
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
+.- -+++.+-||-.....|+..-.-..|+.+...
T Consensus 108 c~~----------------lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 108 CEE----------------LGLKVYAPLWGRDPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred HHH----------------hCCEEeecccCCCHHHHHHHHHHcCCeEEEE
Confidence 642 2478899999999999988888888887654
No 98
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.03 E-value=0.0041 Score=69.58 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcc-cccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSH-KRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~-kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
.++..+.+++++. +..+.+|.|.+|||.||++++.++.+.+..... ...+..+..+.| |.. +. + +...
T Consensus 209 ~lr~~L~~aV~~r--l~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsi--g~~-~~-~-----D~~~ 277 (578)
T PLN02549 209 VLREAFEKAVIKR--LMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCV--GLE-GS-P-----DLKA 277 (578)
T ss_pred HHHHHHHHHHHHH--hccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEec--CCC-CC-C-----HHHH
Confidence 3444444444442 223557999999999999999998774432100 000012333333 331 11 1 3456
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCC--C-ccHHHHHHHHHHHHHHHHHHh
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTT--L-SSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s--~-Tsre~l~~~lR~~lL~~~A~~ 243 (521)
++++++ |.+++.+.+.. +.+.. .+..+.-.+.+ . +.+ ..+-..++.+.|++
T Consensus 278 Ar~vA~~lg~~h~ev~~~~-------~e~~~-------------~l~~~i~~le~~dp~~~~----~s~p~yll~r~a~~ 333 (578)
T PLN02549 278 AREVADYLGTVHHEFHFTV-------QEGID-------------AIEDVIYHLETYDVTTIR----ASTPMFLMSRKIKS 333 (578)
T ss_pred HHHHHHHhCCCCeEEEECh-------HHHHH-------------HHHHHHHHhcCCCCccch----hHHHHHHHHHHHHh
Confidence 777777 88988877652 00000 00011100110 0 001 12223456778899
Q ss_pred cCCCeEEeccCcchhH
Q psy3867 244 LNCTKIFTAETQTDLA 259 (521)
Q Consensus 244 lg~~~V~tGh~~dDlA 259 (521)
.|+..|++|+-+|++.
T Consensus 334 ~gvkVvLsGeGaDElF 349 (578)
T PLN02549 334 LGVKMVLSGEGSDEIF 349 (578)
T ss_pred cCCEEEEecCchHhhh
Confidence 9999999999999883
No 99
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=96.79 E-value=0.015 Score=66.60 Aligned_cols=172 Identities=9% Similarity=0.053 Sum_probs=87.0
Q ss_pred CCeEEEecCCCccHHHHHHHH-------HHHhhhhccc------c-cc---------------eeEEEEEEeCCCCCccC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLL-------QEGMQLSSHK------R-IL---------------FSVCAIYIDDGSISQVS 158 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL-------~~~l~~~~~k------r-~~---------------f~v~~v~ID~g~~~~~s 158 (521)
.++++|++|||.||++.+.++ .+++...... + ++ --+.++++..- ..+
T Consensus 348 ~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~---~ss 424 (700)
T PLN02339 348 ASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSE---NSS 424 (700)
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCC---CCC
Confidence 468999999999999877775 3344211000 0 00 01344444311 122
Q ss_pred hHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHH
Q psy3867 159 ISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNL 236 (521)
Q Consensus 159 ~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~l 236 (521)
. ++.+.++++++ |+.++.+++++++..-. ..+....+.+ ..+......-....+.+.+-.++|..+
T Consensus 425 ~----~t~~~A~~la~~lG~~~~~i~I~~~~~~~~-~~~~~~~g~~-------~~f~~~~~~~~~d~~~~NiQAR~R~~~ 492 (700)
T PLN02339 425 E----ETRSRAKQLADEIGSSHLDVKIDGVVSAVL-SLFQTLTGKR-------PRYKVDGGSNAENLALQNIQARIRMVL 492 (700)
T ss_pred H----HHHHHHHHHHHHHCCCEEEEeCHHHHHHHH-HHhhhhcCCC-------ccccccCCCcccchhhhcccHHHHHHH
Confidence 2 35566888888 99999999996442110 0010000000 000000000001123455567888888
Q ss_pred HHHHHHhcC------CCeEEecc-CcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHH--
Q psy3867 237 LLQAAKKLN------CTKIFTAE-TQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNI-- 307 (521)
Q Consensus 237 L~~~A~~lg------~~~V~tGh-~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~-- 307 (521)
+..+|...+ ...+++|. |.+++ +.| +.+-+.|. .--+-|+.+++|.+|+.+++
T Consensus 493 l~~~A~l~~~~~~~~g~~LvlgTgN~sE~--------~~G------y~T~ygd~----~~~~~pi~~l~Kt~v~~l~~~~ 554 (700)
T PLN02339 493 AFMLASLLPWVRGKSGFLLVLGSANVDEG--------LRG------YLTKYDCS----SADINPIGGISKQDLRSFLRWA 554 (700)
T ss_pred HHHHHhhcchhhccCCceEEEcCCCcchh--------hee------eeeecCCC----CcCccccCCCcHHHHHHHHHHH
Confidence 888776554 22355553 22222 222 12222121 22378999999999998844
Q ss_pred --HCCCC
Q psy3867 308 --FNDLS 312 (521)
Q Consensus 308 --~~~L~ 312 (521)
..++|
T Consensus 555 ~~~~~~~ 561 (700)
T PLN02339 555 ATNLGYP 561 (700)
T ss_pred HHhcCCC
Confidence 44555
No 100
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=96.79 E-value=0.012 Score=65.91 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhccc---ccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHK---RILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~k---r~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
.++..+.+++++. +....+|.+.+|||.||++++.++.+...+.... .....+..+.|... + ++ +.
T Consensus 221 ~lr~~L~~AV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~---~-~~-----D~ 289 (586)
T PTZ00077 221 EIREALEAAVRKR--LMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE---G-SP-----DL 289 (586)
T ss_pred HHHHHHHHHHHHH--hcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC---C-Cc-----hH
Confidence 3444455555442 3345689999999999999999987633210000 00012334444321 1 11 35
Q ss_pred HHHHHHhc--cCCEEEEEccc--ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCC---CccHHHHHHHHHHHHHHH
Q psy3867 167 AQIATAMK--YFDSYFTCLEQ--ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTT---LSSRQYLLQTLRQNLLLQ 239 (521)
Q Consensus 167 ~~v~~~~e--g~p~~iv~l~e--vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s---~Tsre~l~~~lR~~lL~~ 239 (521)
..++++++ |.+++.+.+.. .++ .+..+.-.+.+ .+.+. .+-..++.+
T Consensus 290 ~~Ar~vA~~lg~~h~~i~~~~~e~~~----------------------~l~~~i~~le~~~~~~~~~----~~p~yll~r 343 (586)
T PTZ00077 290 KAARKVAEYLGTEHHEFTFTVEEGID----------------------ALPDVIYHTETYDVTTIRA----STPMYLLSR 343 (586)
T ss_pred HHHHHHHHHhCCcCcEEEECHHHHHH----------------------HHHHHHHHhcCCCCCCcch----HHHHHHHHH
Confidence 56777877 89988877642 110 01111100100 01111 122345677
Q ss_pred HHHhcCCCeEEeccCcchhH
Q psy3867 240 AAKKLNCTKIFTAETQTDLA 259 (521)
Q Consensus 240 ~A~~lg~~~V~tGh~~dDlA 259 (521)
.|++.|+..|++|+-+|++.
T Consensus 344 ~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 344 RIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHhcCCeEEEecCchhhhc
Confidence 88899999999999999874
No 101
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=96.53 E-value=0.019 Score=64.07 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcc--cc---cceeEEEEEEeCCCCCccChHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSH--KR---ILFSVCAIYIDDGSISQVSISERK 163 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~--kr---~~f~v~~v~ID~g~~~~~s~~e~~ 163 (521)
+.++..+.+++++. +..+.+|.+.+|||.||++++.++.+...+... .+ ....+..+.|... + ++
T Consensus 210 ~~lr~~L~~aV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~---~-~~---- 279 (554)
T PRK09431 210 NELRDALEAAVKKR--LMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE---G-SP---- 279 (554)
T ss_pred HHHHHHHHHHHHHH--hcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC---C-CC----
Confidence 34455555555442 334568999999999999999998763321000 00 0013444555432 1 11
Q ss_pred HHHHHHHHHhc--cCCEEEEEccc--ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCC---CccHHHHHHHHHHHH
Q psy3867 164 ANNAQIATAMK--YFDSYFTCLEQ--ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTT---LSSRQYLLQTLRQNL 236 (521)
Q Consensus 164 ~~l~~v~~~~e--g~p~~iv~l~e--vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s---~Tsre~l~~~lR~~l 236 (521)
+...++++++ |.++|.+.+.. +++ .+..+...+.+ .+.+. .+-..+
T Consensus 280 -D~~~A~~vA~~lg~~h~~v~~t~~e~~~----------------------~l~~vi~~le~~dp~~~~~----~~p~yl 332 (554)
T PRK09431 280 -DLKAAREVADHLGTVHHEIHFTVQEGLD----------------------ALRDVIYHLETYDVTTIRA----STPMYL 332 (554)
T ss_pred -hHHHHHHHHHHhCCccEEEEeCHHHHHH----------------------HHHHHHHHHhccCCccchh----HHHHHH
Confidence 3456777777 99999888752 110 00111000000 01111 122334
Q ss_pred HHHHHHhcCCCeEEeccCcchhH
Q psy3867 237 LLQAAKKLNCTKIFTAETQTDLA 259 (521)
Q Consensus 237 L~~~A~~lg~~~V~tGh~~dDlA 259 (521)
+.+.|++.|+..|++|+=+|.+.
T Consensus 333 l~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 333 MARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHcCCEEEEecCchhhhh
Confidence 56666778999999999998875
No 102
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=96.27 E-value=0.039 Score=62.51 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.+...|.++++. + +..+.+|.+.+|||.||++++.++.+.. ...+..++|.... ... + +...+
T Consensus 242 ~l~~~l~~aV~~-r-l~~d~~vg~~LSGGlDSs~Iaa~~~~~~--------~~~i~t~s~~~~~-~~~--d----E~~~A 304 (628)
T TIGR03108 242 ELIERLREAVRS-R-MVADVPLGAFLSGGVDSSAVVALMAGLS--------DTPVNTCSIAFDD-PAF--D----ESAYA 304 (628)
T ss_pred HHHHHHHHHHHH-H-HhcCCcceEeecCCccHHHHHHHHHHhc--------CCCCcEEEEecCC-CCC--C----hHHHH
Confidence 344555555544 2 2345679999999999999998876411 1123344444321 111 1 23557
Q ss_pred HHHhc--cCCEEEEEccc
Q psy3867 170 ATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~e 185 (521)
+.+++ |++++++.++.
T Consensus 305 ~~vA~~~g~~h~~~~~~~ 322 (628)
T TIGR03108 305 RQVAERYGTNHRVETVDP 322 (628)
T ss_pred HHHHHHhCCCCeEEecCH
Confidence 77777 99999988763
No 103
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=96.08 E-value=0.03 Score=63.00 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQI 169 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v 169 (521)
.+...+++++++. +..+.+|.+.+|||.||++++.++.+ +. .-.+..++|......+...+ +...+
T Consensus 244 ~l~~~L~~AV~~r--l~sd~pvg~~LSGGlDSs~Iaa~~~~-~~-------~~~l~tftigf~~~~~~~~d----E~~~A 309 (589)
T TIGR03104 244 AILEALRLAVKRR--LVADVPVGVLLSGGLDSSLIVGLLAE-AG-------VDGLRTFSIGFEDVGGEKGD----EFEYS 309 (589)
T ss_pred HHHHHHHHHHHHH--hhcCCceeEEecCCccHHHHHHHHHH-hc-------CCCceEEEEEecCCCCCCCC----hHHHH
Confidence 4455555555542 24456899999999999999988765 21 11233444443211000011 34567
Q ss_pred HHHhc--cCCEEEEEcc
Q psy3867 170 ATAMK--YFDSYFTCLE 184 (521)
Q Consensus 170 ~~~~e--g~p~~iv~l~ 184 (521)
+++++ |.+++.+.+.
T Consensus 310 ~~vA~~~g~~h~~i~~~ 326 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIP 326 (589)
T ss_pred HHHHHHhCCcCeEEEcC
Confidence 77777 9999988875
No 104
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=95.83 E-value=0.087 Score=58.64 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
..+.+...++.++++.- .....|.+.+|||.||++++.++.+..... .. . -++|+.... +. + +.
T Consensus 211 ~~~~l~~~l~~sV~~r~--~advpvg~~lSGGlDSS~Iaa~a~~~~~~~----~~-~--~fsvg~~~~-~~-~-----D~ 274 (542)
T COG0367 211 LAEHLRSLLEDAVKRRL--VADVPVGVFLSGGLDSSLIAAIAAEELGKE----GK-T--TFTVGFEDS-DS-P-----DA 274 (542)
T ss_pred HHHHHHHHHHHHHHHHh--ccCCcEEEEeCCCccHHHHHHHHHHhcccc----ce-e--eeEeecCCC-CC-c-----hH
Confidence 34455566666655532 345689999999999999999998743211 11 0 244443321 11 1 34
Q ss_pred HHHHHHhc--cCCEEEEEccc--ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867 167 AQIATAMK--YFDSYFTCLEQ--ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK 242 (521)
Q Consensus 167 ~~v~~~~e--g~p~~iv~l~e--vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~ 242 (521)
+.+++.++ |.+++.+.+.. +... +..++-.+.+... +-..+-..++.+.|+
T Consensus 275 ~~a~~~A~~lg~~h~~~~~~~~e~~~~----------------------~~~vv~~~~~p~~---~~~~~ply~~~~~a~ 329 (542)
T COG0367 275 KYARAVAKFLGTPHHEIILTNEELLNA----------------------LPEVVKALDTPGG---MAASIPLYLLSRKAR 329 (542)
T ss_pred HHHHHHHHHhCCCcEEEeecHHHHHHH----------------------HHHHHhhcCCCCc---ccchhHHHHHHHhhh
Confidence 55777776 88888776653 2111 1111111111111 112233456678899
Q ss_pred hcCCCeEEeccCcchhH
Q psy3867 243 KLNCTKIFTAETQTDLA 259 (521)
Q Consensus 243 ~lg~~~V~tGh~~dDlA 259 (521)
+.|...|++|+-+|.+.
T Consensus 330 ~~g~kVvLSGeGADElF 346 (542)
T COG0367 330 AEGEKVVLSGEGADELF 346 (542)
T ss_pred hcCcEEeecCccHHHHh
Confidence 99999999999988764
No 105
>KOG0571|consensus
Probab=95.13 E-value=0.1 Score=55.16 Aligned_cols=136 Identities=15% Similarity=0.048 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHH
Q psy3867 91 LNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIA 170 (521)
Q Consensus 91 i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~ 170 (521)
+++-|.++.+|.-| ..-++-|.+|||.||+..+.++.+.+.+....+ +-.++.+.|-.. .|+ ++...+
T Consensus 210 ~r~~~~~aV~KRLM--~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~-~~~lhsFaIGle----~SP-----DL~aar 277 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLM--TDVPFGVLLSGGLDSSLVASIAARELKKAQAAR-GSKLHSFAIGLE----DSP-----DLLAAR 277 (543)
T ss_pred HHHHHHHHHHHHhh--ccCceeEEeeCCchHHHHHHHHHHHHHHhhhhc-CCCceEEEecCC----CCh-----hHHHHH
Confidence 44444444444222 233688999999999999999877675422212 445555544322 122 466788
Q ss_pred HHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCe
Q psy3867 171 TAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTK 248 (521)
Q Consensus 171 ~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~ 248 (521)
++++ |.++|.+.+.---+++..+... -+-+++.- .|-|+. .-..+|.+.-+++|...
T Consensus 278 kVAd~igt~Hhe~~ft~qegidal~eVI----------~hLETYDv-------ttIRas----tpmyLlsr~Ikk~gvkm 336 (543)
T KOG0571|consen 278 KVADFIGTIHHEHTFTIQEGIDALDEVI----------YHLETYDV-------TTIRAS----TPMYLLSRKIKKLGVKM 336 (543)
T ss_pred HHHHHhCCcceEEEEcHHHHHHHHHHHh----------eeeecccc-------ceEecC----CchHHHHHHHHhcceEE
Confidence 8888 9888876654211111111000 00001100 000000 11234556778899999
Q ss_pred EEeccCcchhH
Q psy3867 249 IFTAETQTDLA 259 (521)
Q Consensus 249 V~tGh~~dDlA 259 (521)
|+.|+-+|++.
T Consensus 337 vlSGEGsDEif 347 (543)
T KOG0571|consen 337 VLSGEGSDEIF 347 (543)
T ss_pred EEecCCchhhh
Confidence 99999888764
No 106
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=95.03 E-value=0.37 Score=45.64 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=73.8
Q ss_pred EEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccC
Q psy3867 111 VLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALE 188 (521)
Q Consensus 111 VLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~ 188 (521)
+||-.=-|++|++.+..|.+ .||+|.+.+-|..+. +..|..+-++.++++++ ++++.+-+.+
T Consensus 1 lLLH~CCaPCs~~~~~~L~~---------~g~~vt~~fyNPNIh---P~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~---- 64 (176)
T PF02677_consen 1 LLLHICCAPCSTYPLERLRE---------EGFDVTGYFYNPNIH---PYEEYERRLEELKRFAEKLGIPLIEGDYD---- 64 (176)
T ss_pred CeeeecCccccHHHHHHHHH---------CCCCeEEEEeCCCCC---cHHHHHHHHHHHHHHHHHcCCCEEecCCC----
Confidence 35556679999999988876 489999999998874 23455556677888887 8888765533
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTA 252 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tG 252 (521)
. .+++....+.. ..+-...||..|-.+|-..-.++|+++|+++.-|-
T Consensus 65 ~--~~w~~~v~~~e---------------~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTT 111 (176)
T PF02677_consen 65 P--EEWLRAVKGLE---------------DEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTTT 111 (176)
T ss_pred H--HHHHHHHhhCc---------------cCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 1 12221111110 00112358999999999999999999999887553
No 107
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.89 E-value=0.6 Score=40.52 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=60.2
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccccc
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQAL 187 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf 187 (521)
+|||+++|+..|--++..... +. ++.+-++.++||..+... ...++.++.++.+.+.++ +++.+++.-.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~-la----~~~~~~l~ll~v~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAAR-LA----DRLKAPWYVVYVETPRLN-RLSEAERRRLAEALRLAEELGAEVVTLPGDD-- 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHH-HH----HHhCCCEEEEEEecCccc-cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCc--
Confidence 589999999999988887765 32 234668899999876421 112223444555555554 44433221100
Q ss_pred CCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcch
Q psy3867 188 EPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTD 257 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dD 257 (521)
....|.++|++++++.|++|.+...
T Consensus 73 ---------------------------------------------~~~~I~~~~~~~~~dllviG~~~~~ 97 (124)
T cd01987 73 ---------------------------------------------VAEAIVEFAREHNVTQIVVGKSRRS 97 (124)
T ss_pred ---------------------------------------------HHHHHHHHHHHcCCCEEEeCCCCCc
Confidence 1134568899999999999988653
No 108
>PRK10490 sensor protein KdpD; Provisional
Probab=94.28 E-value=0.42 Score=56.57 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEc
Q psy3867 106 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCL 183 (521)
Q Consensus 106 ~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l 183 (521)
.-+++|||++||++.|-.|+.-..+ +. .+++-++.++||+.+.....+.+++....+.+ ++++ |-+++++.-
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~r-lA----~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~-~lA~~lGa~~~~~~~ 321 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAAR-LA----ARLGSVWHAVYVETPRLHRLPEKKRRAILSAL-RLAQELGAETATLSD 321 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHH-HH----HhcCCCEEEEEEecCCcCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeC
Confidence 4568999999999999887766544 32 34677899999997642233344443333444 4666 777665532
Q ss_pred ccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcch
Q psy3867 184 EQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTD 257 (521)
Q Consensus 184 ~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dD 257 (521)
+++ -..|.++|++.|++.|++|++...
T Consensus 322 ~dv-----------------------------------------------a~~i~~~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 322 PAE-----------------------------------------------EKAVLRYAREHNLGKIIIGRRASR 348 (895)
T ss_pred CCH-----------------------------------------------HHHHHHHHHHhCCCEEEECCCCCC
Confidence 210 023568999999999999998643
No 109
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=92.90 E-value=1.1 Score=40.08 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=29.8
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
+||||++|+..|..++....+ + .++.+.++.++||-..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~-~----a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALD-N----LATKGQTIVLVHVHPP 38 (146)
T ss_pred CEEEEecCccccHHHHHHHHH-h----ccCCCCcEEEEEeccC
Confidence 589999999999999888765 2 2345778999999643
No 110
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=91.76 E-value=1.6 Score=37.06 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
+|||+++++..+..++..+.... +..+.++.++||....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a-----~~~~~~i~~l~v~~~~ 39 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA-----RRLGAELVLLHVVDPP 39 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-----HhcCCEEEEEEEecCC
Confidence 58999999999999988876632 2356789999998654
No 111
>KOG0189|consensus
Probab=91.59 E-value=2.2 Score=41.26 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=86.1
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhccCCEEEEEcccccC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALE 188 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~iv~l~evf~ 188 (521)
.-+.+++|| ...+|+.++++. .+-.+.+++||.+-..+ + --...+.+++-+-+++.|+.--+.+-.
T Consensus 47 ~~~q~a~~G-~~~lvlid~~~~---------~~~~~~l~~idT~~~~P---e-T~~l~d~VekkY~~i~I~~~~pd~~e~ 112 (261)
T KOG0189|consen 47 NLFQTAASG-LEGLVLIDMLSK---------TGRPFRLFFIDTLHHFP---E-TLRLFDAVEKKYGNIRIHVYFPDAVEV 112 (261)
T ss_pred hHHHHHhcc-ccchHHHHHHHH---------cCCCceeEEeeccccCh---H-HHHHHHHHHHhcCceEEEEEcchhHHH
Confidence 345677775 456788888875 34456789999985322 1 112233444444347777655443110
Q ss_pred CchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhc
Q psy3867 189 PDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISL 268 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~ 268 (521)
. ..+....+.+. ++ +--.++ |+..+-+-+.+.-+.++..+++||..-+.-
T Consensus 113 e---a~~~~K~~~~~--~E-------------~~~q~~--~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~---------- 162 (261)
T KOG0189|consen 113 E---ALFASKGGFSL--WE-------------DDHQEY--DRLRKVEPARRAYKGLNVKAVFTGRRKSQG---------- 162 (261)
T ss_pred H---HHHHhccchhh--ee-------------cCchhh--hhhhhccHHHHHhhccceeeEEecccccCC----------
Confidence 0 01110000000 00 111122 333334445555677889999999765431
Q ss_pred CCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 269 GKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 269 GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
|.-..|+- +.+ |..+ ++.-+.||..+.-.||..|.+-+++|+-
T Consensus 163 gtRselpi-Vqv-D~~f-ellK~NPlaN~~~~dV~nyi~t~nVP~N 205 (261)
T KOG0189|consen 163 GTRSELPI-VQV-DPVF-ELLKINPLANWEFNDVWNYIRTNNVPYN 205 (261)
T ss_pred Ccccccce-EEe-cCcc-ceeeecccccccHHHHHHHHHhcCCcHH
Confidence 11122332 111 2222 3677999999999999999999999864
No 112
>KOG0573|consensus
Probab=91.39 E-value=0.65 Score=49.67 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
..+|.|.||||+||+++++++++.+..+ -.+..+.|-.|
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~vp~n------e~IdLINVaF~ 288 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVVPEN------EPIDLINVAFG 288 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhcCCC------CceeEEEeecc
Confidence 4689999999999999999999866432 34445555443
No 113
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=90.59 E-value=3.6 Score=35.56 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=29.4
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
+|||++.|+.+|..++..... +. +..+-++.++|+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~-la----~~~~~~v~ll~v~~~ 38 (132)
T cd01988 1 RILVPVANPNTARDLLELAAA-LA----RAQNGEIIPLNVIEV 38 (132)
T ss_pred CEEEecCCchhHHHHHHHHHH-Hh----hcCCCeEEEEEEEec
Confidence 589999999999988887764 43 234668899999754
No 114
>PRK09982 universal stress protein UspD; Provisional
Probab=90.33 E-value=3.3 Score=37.22 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=29.7
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++||||+.|+..|.-++....+ +. +..+-+++++||-+.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~-lA----~~~~a~l~llhV~~~ 42 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALE-LA----RHNDAHLTLIHIDDG 42 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHH-HH----HHhCCeEEEEEEccC
Confidence 4899999999999888876654 32 235668999999653
No 115
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.86 E-value=7.6 Score=44.88 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=48.7
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
-+++|||++||+..|--+..-..+ +. .+++-+..++||+.+.....+..+ .+.+....++++ |-++.++.-+
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~R-lA----~~~~a~~~av~v~~~~~~~~~~~~-~~~l~~~~~Lae~lGae~~~l~~~ 320 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAAR-LA----SRLHAKWTAVYVETPELHRLSEKE-ARRLHENLRLAEELGAEIVTLYGG 320 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHH-HH----HHhCCCeEEEEEeccccccccHHH-HHHHHHHHHHHHHhCCeEEEEeCC
Confidence 358999999999999888776654 32 246778899999987543333333 334566667777 6666665533
No 116
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=86.79 E-value=9.7 Score=33.83 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=29.1
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++|||++.|...|..+|..... +. ++.+-++.++|++..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~-la----~~~~a~l~ll~v~~~ 42 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVS-MA----RPYNAKVSLIHVDVN 42 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHH-HH----HhhCCEEEEEEEccC
Confidence 4899999999999888877654 32 234668889999643
No 117
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.36 E-value=10 Score=36.32 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=72.4
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
.+|||-.=-++||+.+|.-|.+ .++++.+.+-|..+. +.+ |...-.+..+++++ |+++.--+.++.
T Consensus 4 ~kiLlH~CCAPcs~y~le~l~~---------~~~~i~~yFYNPNIh-P~~--EY~~R~~e~~~f~~~~~i~~iegdY~~~ 71 (204)
T COG1636 4 PKLLLHSCCAPCSGYVLEKLRD---------SGIKITIYFYNPNIH-PLS--EYELRKEEVKRFAEKFGINFIEGDYEDL 71 (204)
T ss_pred CeeEEEeecCCCcHHHHHHHHh---------cCcceEEEEeCCCCC-chH--HHHHHHHHHHHHHHHcCCeeeecCcccH
Confidence 4799988899999999888765 367887777787763 332 33334466777787 877776554321
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIF 250 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~ 250 (521)
..++...+++..+ +-..-||..|=-+|...-.+.|+++|++++-
T Consensus 72 -----~~w~~~vKg~E~E---------------pE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ft 115 (204)
T COG1636 72 -----EKWFERVKGMEDE---------------PEGGKRCTMCFDMRLEKTAKKAKELGFDVFT 115 (204)
T ss_pred -----HHHHHHhhcchhC---------------CCCCchhHhHHHHHHHHHHHHHHHcCCchhh
Confidence 1233322222110 1122478899889999889999999997653
No 118
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=80.80 E-value=6 Score=33.99 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=42.5
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC--CCcc-----ChHHHHHHHHHHHHHhc--cCCEEE
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS--ISQV-----SISERKANNAQIATAMK--YFDSYF 180 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~--~~~~-----s~~e~~~~l~~v~~~~e--g~p~~i 180 (521)
+|+|+.+||..|++++.-+++.++.+ .+.+++.+..+.+-. ..++ .+. -.-.++.+++.++ |+|..+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~---gi~~~i~a~~~~e~~~~~~~~Dvill~PQ-v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKER---GVPLEAAAGAYGSHYDMIPDYDLVILAPQ-MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEEeeHHHHHHhccCCCEEEEcCh-HHHHHHHHHHHhhhcCCCEEE
Confidence 68999999999999999998866531 233344433322100 0000 011 1124566778776 899988
Q ss_pred EEcc
Q psy3867 181 TCLE 184 (521)
Q Consensus 181 v~l~ 184 (521)
++..
T Consensus 78 I~~~ 81 (99)
T cd05565 78 TTGK 81 (99)
T ss_pred eCHH
Confidence 8765
No 119
>PRK15005 universal stress protein F; Provisional
Probab=77.71 E-value=20 Score=31.64 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=24.8
Q ss_pred CeEEEecCCCccHH--HHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSHSSM--ALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~DS~--vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
++|||++.|+..|. -++....+ + .++.+-++.++|+-+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~-l----a~~~~~~l~ll~v~~ 42 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEA-E----AKIDDAEVHFLTVIP 42 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHH-H----HhccCCeEEEEEEEc
Confidence 47999999999853 34433322 2 234567888888864
No 120
>PRK10116 universal stress protein UspC; Provisional
Probab=76.28 E-value=42 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=27.0
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEe
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID 150 (521)
.+|||++.|..+|..+|..... |. ++.+-++.++|+-
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~-lA----~~~~a~l~ll~v~ 40 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVS-IA----RPVNGKISLITLA 40 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHH-HH----HHhCCEEEEEEEc
Confidence 5899999999999887776654 32 2345677788773
No 121
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=76.06 E-value=1.9 Score=32.77 Aligned_cols=31 Identities=13% Similarity=0.462 Sum_probs=22.4
Q ss_pred CccccccCCCCceEEecCCcccchHHHHHHHH
Q psy3867 61 DKLCPRCNTNNGEVVLRLKDIYCKACLLQYLN 92 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r~~~~~Cr~CF~~~i~ 92 (521)
...|..|+.. ..++-..+..+|+.||.++..
T Consensus 16 sr~C~vCg~~-~gliRkygL~~CRqCFRe~A~ 46 (54)
T PTZ00218 16 SRQCRVCSNR-HGLIRKYGLNVCRQCFRENAE 46 (54)
T ss_pred CCeeecCCCc-chhhhhcCcchhhHHHHHhhH
Confidence 3779999984 333333578899999987643
No 122
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=74.22 E-value=30 Score=29.21 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
++|||+++|+.+|..++..+.. +. +..+.++.++||.+..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~-la----~~~~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALE-LA----KRSGAEITLLHVIPPP 42 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHH-HH----HHHTCEEEEEEEEESC
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HH----HhhCCeEEEEEeeccc
Confidence 4899999999999999887765 32 2356789999998654
No 123
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=73.51 E-value=10 Score=32.78 Aligned_cols=71 Identities=13% Similarity=-0.103 Sum_probs=43.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCC------cc----ChHHHHHHHHHHHHHhc--cCC
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS------QV----SISERKANNAQIATAMK--YFD 177 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~------~~----s~~e~~~~l~~v~~~~e--g~p 177 (521)
||||+..+|..|++++..+++.++. .|+++.+-+...+... ++ ....-.-..+.+++.++ ++|
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e-----~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ip 77 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKE-----QGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKP 77 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHH-----CCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCC
Confidence 7999999999999999988876643 3444433333321100 00 00112224567888875 899
Q ss_pred EEEEEccc
Q psy3867 178 SYFTCLEQ 185 (521)
Q Consensus 178 ~~iv~l~e 185 (521)
..+++...
T Consensus 78 v~~I~~~~ 85 (104)
T PRK09590 78 VVQIPPQA 85 (104)
T ss_pred EEEeCHHH
Confidence 99988663
No 124
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.17 E-value=11 Score=31.87 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=43.4
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCC----Ccc-----ChHHHHHHHHHHHHHhc--cCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI----SQV-----SISERKANNAQIATAMK--YFD 177 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~----~~~-----s~~e~~~~l~~v~~~~e--g~p 177 (521)
.+|||+..+|..|+.++.-+++.+.. .++++.+-++..+.. ..+ .+ .-....+.+++.++ |+|
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~-----~gi~~~v~a~~~~~~~~~~~~~Dvill~p-qi~~~~~~i~~~~~~~~ip 77 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEE-----YGVPVKIAAGSYGAAGEKLDDADVVLLAP-QVAYMLPDLKKETDKKGIP 77 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHH-----CCCcEEEEEecHHHHHhhcCCCCEEEECc-hHHHHHHHHHHHhhhcCCC
Confidence 48999999999999888877775543 344444443332110 000 11 11224567777776 789
Q ss_pred EEEEEccc
Q psy3867 178 SYFTCLEQ 185 (521)
Q Consensus 178 ~~iv~l~e 185 (521)
..+++...
T Consensus 78 v~~I~~~~ 85 (95)
T TIGR00853 78 VEVINGAQ 85 (95)
T ss_pred EEEeChhh
Confidence 88887663
No 125
>PRK15456 universal stress protein UspG; Provisional
Probab=68.83 E-value=42 Score=29.65 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=25.6
Q ss_pred CeEEEecCCCc--cHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSH--SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~--DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++|||++.|+. .|..++..... +.+ ... +++++|+-+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~-la~----~~~-~l~llhv~~~ 42 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEF-LAQ----DDG-VIHLLHVLPG 42 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHH-HHh----cCC-eEEEEEEecC
Confidence 48999999984 57666666554 321 223 7888888654
No 126
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=63.21 E-value=20 Score=30.34 Aligned_cols=69 Identities=7% Similarity=0.023 Sum_probs=40.6
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCC----Ccc-----ChHHHHHHHHHHHHHhc--cCCE
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI----SQV-----SISERKANNAQIATAMK--YFDS 178 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~----~~~-----s~~e~~~~l~~v~~~~e--g~p~ 178 (521)
|||++..+|..|+.|+.-+++.+.. .++.+.+.+.+.+.. ..+ .+. .....+.+++.+. ++|.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~Diil~~Pq-v~~~~~~i~~~~~~~~~pv 74 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEK-----RGIDAEIEAVPESELEEYIDDADVVLLGPQ-VRYMLDEVKKKAAEYGIPV 74 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHH-----CCCceEEEEecHHHHHHhcCCCCEEEEChh-HHHHHHHHHHHhccCCCcE
Confidence 5899999999999988888776643 344333333332110 000 111 1224556666554 8888
Q ss_pred EEEEcc
Q psy3867 179 YFTCLE 184 (521)
Q Consensus 179 ~iv~l~ 184 (521)
.+++..
T Consensus 75 ~~I~~~ 80 (96)
T cd05564 75 AVIDMM 80 (96)
T ss_pred EEcChH
Confidence 888765
No 127
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=58.24 E-value=73 Score=27.51 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=26.4
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
.|||++.++|..|+.|+.-++..... ....+++.++..+.
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~---~gi~~~V~A~~~~~ 43 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEK---YEVPVIIEAFPETL 43 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHH---CCCCEEEEEeecch
Confidence 48999999999999999655553321 22344555544553
No 128
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=55.41 E-value=1.4e+02 Score=31.58 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhccccc--ceeEEEEEEeC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRI--LFSVCAIYIDD 151 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~--~f~v~~v~ID~ 151 (521)
-+||||++.|...|.-++.-..+ +. ++. +-+++++||-+
T Consensus 5 ykkILVavDGSe~S~~Al~~Aie-lA----~~~g~~AeL~lL~Vv~ 45 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVE-SA----EEAAETPTVHLVAAAS 45 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHH-HH----HhcCCCCEEEEEEEec
Confidence 35899999999999887776655 32 232 46889999854
No 129
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=12 Score=29.20 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=20.5
Q ss_pred cCccccccCCCCceEEecCCcccchHHHHHH
Q psy3867 60 ADKLCPRCNTNNGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 60 ~~~~C~kCk~~~a~i~~r~~~~~Cr~CF~~~ 90 (521)
....|..|+. +.-++| +..+|+-||.+.
T Consensus 20 ~~nRC~~cGR--prg~~R-kf~lcR~cfRE~ 47 (61)
T COG0199 20 GRNRCRRCGR--PRGVIR-KFGLCRICFREL 47 (61)
T ss_pred ccccccccCC--Cccchh-hhhhHHHHHHHH
Confidence 3467999997 333456 388999999765
No 130
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=49.71 E-value=42 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=28.1
Q ss_pred eEEEecCCCccHHHHH-HHHHHHhhhhcccccceeEEEEEEe
Q psy3867 110 KVLVAFSGSHSSMALL-HLLQEGMQLSSHKRILFSVCAIYID 150 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL-~lL~~~l~~~~~kr~~f~v~~v~ID 150 (521)
||+++..+|..|+.|+ .-+++.+. +.++++.+.+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~-----~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALK-----ELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHH-----HTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHH-----hccCceEEEEec
Confidence 6899999999999999 77777654 356777777666
No 131
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=48.36 E-value=14 Score=27.56 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=19.4
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ........+..||+.||.+.
T Consensus 27 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 27 FKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp SBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred cccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 356666642 23355566899999999764
No 132
>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed
Probab=47.78 E-value=19 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=21.5
Q ss_pred CccccccCCCCceEEecCCcccchHHHHHHHH
Q psy3867 61 DKLCPRCNTNNGEVVLRLKDIYCKACLLQYLN 92 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r~~~~~Cr~CF~~~i~ 92 (521)
...|..|+...+++ -..+..+|+.||.+...
T Consensus 14 ~nrC~~~Gr~rgvi-rkf~l~lcR~~FRe~A~ 44 (52)
T PRK05766 14 ARECQRCGRKQGLI-RKYGLYLCRQCFREVAP 44 (52)
T ss_pred CceeecCCCCceeH-HhhCCcccHHHHHHHHH
Confidence 46799999843333 23467799999976643
No 133
>KOG2316|consensus
Probab=46.04 E-value=24 Score=34.70 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=43.0
Q ss_pred HHHHHHHHhc-CCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 235 NLLLQAAKKL-NCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 235 ~lL~~~A~~l-g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.+|..+-+++ ....|..|..+.|--.+-..|++.-- ++..+-+|..-...++..=.-..|+..
T Consensus 96 ~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL----------------~L~~Ls~LW~rdQ~~LL~eMi~~g~~A 159 (277)
T KOG2316|consen 96 ELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRL----------------GLVSLSYLWQRDQEELLQEMILSGLDA 159 (277)
T ss_pred HHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhh----------------CceeehHHHhccHHHHHHHHHHcCCCe
Confidence 4555666677 78899999888877777777777521 133455666666677766666777765
Q ss_pred ee
Q psy3867 314 VH 315 (521)
Q Consensus 314 ~~ 315 (521)
..
T Consensus 160 ii 161 (277)
T KOG2316|consen 160 II 161 (277)
T ss_pred EE
Confidence 43
No 134
>PRK11175 universal stress protein UspE; Provisional
Probab=45.87 E-value=1.2e+02 Score=30.35 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCeEEeccCcc
Q psy3867 236 LLLQAAKKLNCTKIFTAETQT 256 (521)
Q Consensus 236 lL~~~A~~lg~~~V~tGh~~d 256 (521)
.|.++|++.+++.|++|++..
T Consensus 252 ~I~~~a~~~~~DLIVmG~~~~ 272 (305)
T PRK11175 252 VIPDLAEHLDAELVILGTVGR 272 (305)
T ss_pred HHHHHHHHhCCCEEEECCCcc
Confidence 466889999999999997643
No 135
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=45.25 E-value=1e+02 Score=30.01 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
..+...+++.+.+. .++.|++|||..=..++..|.+. + ++.| ++.++.+||-..+..++ +.+..
T Consensus 9 ~~i~~~i~~~i~~~------~~~~l~lsGGstp~~~y~~L~~~-----~-~i~w~~v~~f~~DEr~Vp~~~~---~Sn~~ 73 (219)
T cd01400 9 DRIAEALAAAIAKR------GRFSLALSGGSTPKPLYELLAAA-----P-ALDWSKVHVFLGDERCVPPDDP---DSNYR 73 (219)
T ss_pred HHHHHHHHHHHHhc------CeEEEEECCCccHHHHHHHhccc-----c-CCCCceEEEEEeeccccCCCCc---ccHHH
Confidence 45556666666553 47999999999998887776531 1 3454 78889999987533222 23455
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++..
T Consensus 74 ~~~~~l 79 (219)
T cd01400 74 LAREAL 79 (219)
T ss_pred HHHHHh
Confidence 666554
No 136
>PRK11175 universal stress protein UspE; Provisional
Probab=44.71 E-value=1.5e+02 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=25.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYI 149 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~I 149 (521)
++|||++.|...|-.++..... +. ++.+-++.++|+
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~-lA----~~~~a~l~ll~v 39 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVY-LA----QRNGGKITAFLP 39 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHH-HH----HhcCCCEEEEEe
Confidence 4799999999998877776654 32 234556777765
No 137
>PLN02360 probable 6-phosphogluconolactonase
Probab=41.63 E-value=1.1e+02 Score=30.80 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.|...++.++.+ ...+.||+|||. ..-++..|.+ .....++.| ++.++.+||-..+..++ +.+..
T Consensus 28 ~~i~~~~~~a~~~------~~~~~lalsGGS-~~~~~~~L~~---~~~~~~idW~~v~~f~~DER~Vp~~~~---~SN~~ 94 (268)
T PLN02360 28 EYIAELSEASVKE------RGVFAIALSGGS-LISFMGKLCE---APYNKTVDWAKWYIFWADERVVAKNHA---DSNYK 94 (268)
T ss_pred HHHHHHHHHHHHh------CCcEEEEECCCC-HHHHHHHHhc---cccccCCCCceEEEEeeecccCCCCCc---chHHH
Confidence 4445555555544 347999999995 3333333321 101124555 78889999987543222 23445
Q ss_pred HHHHH
Q psy3867 168 QIATA 172 (521)
Q Consensus 168 ~v~~~ 172 (521)
.+++.
T Consensus 95 ~~r~~ 99 (268)
T PLN02360 95 LAKDG 99 (268)
T ss_pred HHHHH
Confidence 56654
No 138
>KOG3425|consensus
Probab=40.36 E-value=1e+02 Score=27.64 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=38.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCCCc----------cHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCC
Q psy3867 95 FRAALGKSKMMRPQDKVLVAFSGSH----------SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS 155 (521)
Q Consensus 95 fr~~L~k~kli~~~~kVLVa~SGG~----------DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~ 155 (521)
|.+++.. +..+++|.|+|.|++ |-.++.-++.+++. ...-++.+||++-|.++
T Consensus 15 ~~~~~~~---~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk-----~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 15 FEETLKN---VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK-----HAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHH---HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH-----hCCCceEEEEEEecCCC
Confidence 4444444 446778999999999 55777777777774 24557888999999764
No 139
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=39.85 E-value=1.5e+02 Score=29.10 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+++...++++|.+. .++.||+|||..=..+...|.+ .++.| ++.++.+||-..+..++ +.+..
T Consensus 14 ~~i~~~i~~~i~~~------~~~~lalsGGstp~~~y~~L~~-------~~i~w~~v~~f~~DER~Vp~~~~---~SN~~ 77 (233)
T TIGR01198 14 ERIATKLQTALAER------GQFSLALSGGRSPIALLEALAA-------QPLDWSRIHLFLGDERYVPLDHA---DSNTG 77 (233)
T ss_pred HHHHHHHHHHHHhc------CcEEEEECCCccHHHHHHHHhh-------CCCCcceEEEEEecccccCCCCc---cchHH
Confidence 45555566666542 3799999999999888887764 13454 78889999976432221 22445
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++..
T Consensus 78 ~~~~~L 83 (233)
T TIGR01198 78 LAREAL 83 (233)
T ss_pred HHHHHH
Confidence 566543
No 140
>KOG2303|consensus
Probab=39.73 E-value=1.1e+02 Score=33.65 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.4
Q ss_pred CeEEEecCCCccHHHHHHHHHH
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQE 130 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~ 130 (521)
.-.++.+|||.||.+.+.++..
T Consensus 350 aGfflPLSGG~DSsatA~iV~s 371 (706)
T KOG2303|consen 350 AGFFLPLSGGVDSSATAAIVYS 371 (706)
T ss_pred CceEEecCCCccchHHHHHHHH
Confidence 4588999999999998887754
No 141
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=38.37 E-value=1.1e+02 Score=23.69 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=26.8
Q ss_pred eEEEEEEeCCCCCccChHHHHHHHHHHHHHhccCCEEEE
Q psy3867 143 SVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFT 181 (521)
Q Consensus 143 ~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~iv 181 (521)
.++++.+|....+|++.++.-...++++..+.+.|+.+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred ceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 456677898777899988777777888888877888765
No 142
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=36.62 E-value=1.1e+02 Score=30.43 Aligned_cols=77 Identities=9% Similarity=0.183 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCC-CCccChHHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS-ISQVSISERKANNA 167 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~-~~~~s~~e~~~~l~ 167 (521)
++-..+.+.|.+.. +..+..+.|++|||..=.-++..|.+...+ .++.| ++.++.+||-. .+. ++.+.+..
T Consensus 15 ~~a~~i~~~i~~~~-~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~---~~i~w~~v~if~~DEr~~Vp~---~~~~Sn~~ 87 (253)
T PTZ00285 15 YTSNYIIKRINDFK-PTSDRPFVLGLPTGSTPLPTYQELIRAYRE---GRVSFSNVVTFNMDEYVGLPR---DHPQSYHY 87 (253)
T ss_pred HHHHHHHHHHHHHh-hhcCCCeEEEEcCCCCHHHHHHHHHHHHhh---cCCchhHeEEECCcEEecCCC---CchHHHHH
Confidence 33344444444311 233458999999999988887777653221 23455 68888899865 332 22233445
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++.+
T Consensus 88 ~~~~~l 93 (253)
T PTZ00285 88 FMKENF 93 (253)
T ss_pred HHHHHH
Confidence 566544
No 143
>KOG3147|consensus
Probab=35.60 E-value=2.1e+02 Score=28.81 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCC
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSIS 155 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~ 155 (521)
.+.+.-|++|||.==.+|-..|.. ..+....+ +.+++++|+-..+
T Consensus 38 ~~g~F~i~lSGGSLi~~L~~~l~~----~~~~~i~w~kW~if~~DER~Vp 83 (252)
T KOG3147|consen 38 KRGRFTLALSGGSLIQVLSKLLES----PYQDDIDWSKWHIFFVDERVVP 83 (252)
T ss_pred cCCeEEEEEcCCcHHHHHHHHhcc----cccCCCCccceEEEEEeccccC
Confidence 345789999999644444333322 11222333 6778999998753
No 144
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.07 E-value=1.7e+02 Score=25.27 Aligned_cols=73 Identities=14% Similarity=0.030 Sum_probs=42.9
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCC--c-----cChHHHHHHHHHHHHHhc--cCCEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS--Q-----VSISERKANNAQIATAMK--YFDSY 179 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~--~-----~s~~e~~~~l~~v~~~~e--g~p~~ 179 (521)
.+|++..++|.+++.|..=++++... +.....+.++-.++.... . ..|.-+ -.+..+++.++ |+|..
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~---kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~-y~~~~~~~~~~~~giPV~ 77 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAES---KGKDVTIEAYSETELSEYIDNADVVLLGPQVR-YMLKQLKEAAEEKGIPVE 77 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHh---CCCceEEEEechhHHHHhhhcCCEEEEChHHH-HHHHHHHHHhcccCCCeE
Confidence 47999999999999999888775432 223344444432211100 0 001111 23456777776 89999
Q ss_pred EEEccc
Q psy3867 180 FTCLEQ 185 (521)
Q Consensus 180 iv~l~e 185 (521)
+++..+
T Consensus 78 vI~~~d 83 (102)
T COG1440 78 VIDMLD 83 (102)
T ss_pred EeCHHH
Confidence 998764
No 145
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=31.17 E-value=1.7e+02 Score=28.05 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+++...+++.|.+. .++.||+|||..-..+...|.+... .++.| ++.++.+||-..+...+ +.+..
T Consensus 7 ~~i~~~i~~~i~~~------~~~~i~LsgGstp~~~y~~L~~~~~----~~i~w~~v~~~~~DEr~v~~~~~---~Sn~~ 73 (199)
T PF01182_consen 7 EAIAEAIEEAIAER------GRAVIALSGGSTPKPLYQELAKLHK----ERIDWSRVHFFNVDERVVPPDDP---DSNYR 73 (199)
T ss_dssp HHHHHHHHHHHHHC------SSEEEEE--SCTHHHHHHHHHHHHH----TCSCGGGEEEEESEEESSTTTST---TSHHH
T ss_pred HHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhhhcc----ccCChhHeEEEeCcccccCCCCC---ccHHH
Confidence 34556666666553 4799999999999999888866331 13444 68888999876432211 22445
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++..
T Consensus 74 ~~~~~l 79 (199)
T PF01182_consen 74 MLREHL 79 (199)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 566644
No 146
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.92 E-value=1.1e+02 Score=25.32 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.5
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
+.++++|+|...+|..|..++.+|.+ .||+ +.++..|.
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~---------~G~~--~~~l~GG~ 95 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAE---------RGYD--VDYLAGGM 95 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHH---------cCce--eEEeCCcH
Confidence 34567888888888888888887764 5887 55666553
No 147
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=30.49 E-value=19 Score=34.80 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=19.8
Q ss_pred ccccccCCC---CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN---NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~---~a~i~~r~~~~~Cr~CF~~~ 90 (521)
..|.||++. +-++.+ .+..+|+.|+...
T Consensus 173 v~C~kCGE~~~e~~~~~~-ng~~vC~~C~~~~ 203 (206)
T COG2191 173 VRCSKCGELFMEPRAVVL-NGKPVCKPCAEKK 203 (206)
T ss_pred eeccccCcccccchhhhc-CCceecccccccc
Confidence 689999983 222333 3789999999643
No 148
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.17 E-value=76 Score=30.86 Aligned_cols=43 Identities=33% Similarity=0.432 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 103 KMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 103 kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
.++.++ .|++++||+-.+.-++.++.. + |+.+..+.+++-+.+
T Consensus 82 g~i~~~-DvviaiS~SGeT~el~~~~~~-a-----K~~g~~liaiT~~~~ 124 (202)
T COG0794 82 GMITPG-DVVIAISGSGETKELLNLAPK-A-----KRLGAKLIAITSNPD 124 (202)
T ss_pred cCCCCC-CEEEEEeCCCcHHHHHHHHHH-H-----HHcCCcEEEEeCCCC
Confidence 445555 499999999999999998864 3 467888888876654
No 149
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=27.94 E-value=3.1e+02 Score=27.37 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCC-CCccChHHHHHHHHH
Q psy3867 91 LNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGS-ISQVSISERKANNAQ 168 (521)
Q Consensus 91 i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~-~~~~s~~e~~~~l~~ 168 (521)
+-..+-..|.... .....++.|++|||..-..+...|.+... ..++.| ++.++.+|+-. .+.. +...+...
T Consensus 16 ~a~~i~~~i~~~~-~~~~~~~~i~lsgGstP~~~y~~L~~~~~---~~~i~w~~v~~f~~DEr~~vp~~---~~~Sn~~~ 88 (259)
T TIGR00502 16 AARHIANRINEFK-PTAARPFVLGLPTGGTPIGTYKQLIELHQ---AGKISFQNVTTFNMDEYAGLSEE---HPESYHSF 88 (259)
T ss_pred HHHHHHHHHHHhC-ccccCceEEEEcCCCChHHHHHHHHHHhh---ccCCchhHeEEEeCeecCCCCCC---chHHHHHH
Confidence 3334444444421 22245799999999998888888764221 123455 68889999874 4322 22234555
Q ss_pred HHHHh
Q psy3867 169 IATAM 173 (521)
Q Consensus 169 v~~~~ 173 (521)
+++.+
T Consensus 89 ~~~~l 93 (259)
T TIGR00502 89 MHNNF 93 (259)
T ss_pred HHHHh
Confidence 66544
No 150
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=27.64 E-value=6.3e+02 Score=28.61 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=37.8
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc-cCCEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK-YFDSYF 180 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e-g~p~~i 180 (521)
+..+++|+|.=.-..|+++-..+|.++|. +++..-+..||-+-...||-. ....++++.+ |..+.|
T Consensus 66 i~~~e~I~I~gDyD~DGitstail~~~L~-----~~g~~~~~~~IP~R~~eGYGl-----~~~~i~~~~~~~~~LiI 132 (575)
T PRK11070 66 LREGTRIIVVGDFDADGATSTALSVLALR-----SLGCSNVDYLVPNRFEDGYGL-----SPEVVDQAHARGAQLIV 132 (575)
T ss_pred HHCCCEEEEEEecCccHHHHHHHHHHHHH-----HcCCCceEEEeCCCCcCCCCC-----CHHHHHHHHhcCCCEEE
Confidence 45678999988888888888777777664 345422334554322222211 1123555554 666554
No 151
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=27.26 E-value=67 Score=22.08 Aligned_cols=30 Identities=33% Similarity=0.794 Sum_probs=20.6
Q ss_pred ccccCCC--CceEEecCCcccchHHHHHHHHH
Q psy3867 64 CPRCNTN--NGEVVLRLKDIYCKACLLQYLNH 93 (521)
Q Consensus 64 C~kCk~~--~a~i~~r~~~~~Cr~CF~~~i~~ 93 (521)
|..|.+. .+++.+.=|-.||++|+.+++..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence 5567543 34455566788999999887654
No 152
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.75 E-value=64 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI 147 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v 147 (521)
+||+|+++|+....-..+++.+ |. +.++++.++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~-L~-----~~g~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRR-LK-----RAGWEVRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHH-HH-----TTTSEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHH-Hh-----hCCCEEEEE
Confidence 4899999999999888888876 43 347787665
No 153
>KOG0933|consensus
Probab=26.54 E-value=70 Score=38.00 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=39.1
Q ss_pred cCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCC--ccChHHHHHHHHHHHHHhccCCEEEEEccc-cc
Q psy3867 115 FSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSIS--QVSISERKANNAQIATAMKYFDSYFTCLEQ-AL 187 (521)
Q Consensus 115 ~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~--~~s~~e~~~~l~~v~~~~eg~p~~iv~l~e-vf 187 (521)
+|||.-|+|+|.|+...| .|+|..+||=.-... ..|.. +-.-..|+.-+.+-.|.||+|.+ .|
T Consensus 1083 LSGGQRSLVALsLIlamL--------~fkPAPlYILDEVDAALDLSHT--QNIG~mIkthF~~sQFIVVSLKeGMF 1148 (1174)
T KOG0933|consen 1083 LSGGQRSLVALSLILAML--------KFKPAPLYILDEVDAALDLSHT--QNIGRMIKTHFTHSQFIVVSLKEGMF 1148 (1174)
T ss_pred hcCchHHHHHHHHHHHHH--------cCCCCceeehhhhHHhhcchhh--hhHHHHHHhhCCCCeEEEEEchhhcc
Confidence 899999999999998643 577877887322111 11111 11112333334477899999986 44
No 154
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.87 E-value=42 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.881 Sum_probs=12.8
Q ss_pred cccccCCCCceEEecCCcccchHHH
Q psy3867 63 LCPRCNTNNGEVVLRLKDIYCKACL 87 (521)
Q Consensus 63 ~C~kCk~~~a~i~~r~~~~~Cr~CF 87 (521)
.|.+|+.+ +..+..||..|-
T Consensus 1 ~Cp~CG~~-----~~~~~~fC~~CG 20 (23)
T PF13240_consen 1 YCPNCGAE-----IEDDAKFCPNCG 20 (23)
T ss_pred CCcccCCC-----CCCcCcchhhhC
Confidence 37788763 344577787773
No 155
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.83 E-value=1.9e+02 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCCCCeEEEec-CCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 105 MRPQDKVLVAF-SGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 105 i~~~~kVLVa~-SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
+.++++|+|.. +||.-|..+.++|+. +||+ +..++-|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~---------~G~~--v~~L~GG~ 121 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLES---------LGID--VPLLEGGY 121 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHH---------cCCc--eeEeCCcH
Confidence 56677888888 589889888888754 5785 45566553
No 156
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=25.06 E-value=1.1e+02 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCccHHH-HHHHHHHHhhhhcccccceeEEEEE
Q psy3867 107 PQDKVLVAFSGSHSSMA-LLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~v-LL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
.|.+|+|+++||.-..- ...++++ |. +.|+++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~-L~-----k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEK-LV-----DEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHH-HH-----hCcCEEEEEE
Confidence 46799999999988887 5888866 42 3477776653
No 157
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=23.23 E-value=33 Score=22.42 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=15.1
Q ss_pred CccccccCCCCceEEec-CCcccchHHH
Q psy3867 61 DKLCPRCNTNNGEVVLR-LKDIYCKACL 87 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r-~~~~~Cr~CF 87 (521)
+.+|.+|+.....+.+. ....||..|.
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq 28 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQ 28 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTC
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCc
Confidence 36899998855555553 2468898885
No 158
>PRK07667 uridine kinase; Provisional
Probab=23.01 E-value=1e+02 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.3
Q ss_pred HHHhhcCCCCCCCeEEEecCCCccH--HHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 97 AALGKSKMMRPQDKVLVAFSGSHSS--MALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 97 ~~L~k~kli~~~~kVLVa~SGG~DS--~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
..|.+++ +.+++|+++|+.-| +.+++.|.+.+.. .+..+.+++.|.
T Consensus 8 ~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l~~-----~~~~~~~i~~Dd 55 (193)
T PRK07667 8 NIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENMKQ-----EGIPFHIFHIDD 55 (193)
T ss_pred HHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEcCc
Confidence 3455544 45699999996555 7778888776642 356777888884
No 159
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.80 E-value=1.1e+02 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=26.7
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
+.+|+|+++||.-+.-.+.++++ |. +.|+++.++.
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~-L~-----~~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLEC-LL-----AADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHH-HH-----HCCCEEEEEE
Confidence 56899999999999888888876 42 2467776653
No 160
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.51 E-value=58 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.866 Sum_probs=15.5
Q ss_pred CccccccCCCCceEEecCCcccchHHH
Q psy3867 61 DKLCPRCNTNNGEVVLRLKDIYCKACL 87 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r~~~~~Cr~CF 87 (521)
.+.|..|+.. +..+..||..|-
T Consensus 2 ~~~Cp~Cg~~-----~~~~~~fC~~CG 23 (26)
T PF13248_consen 2 EMFCPNCGAE-----IDPDAKFCPNCG 23 (26)
T ss_pred cCCCcccCCc-----CCcccccChhhC
Confidence 3678999872 344688998884
No 161
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=22.51 E-value=7.1e+02 Score=25.48 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
..+||+|.+| +-+-.|.+||.++.. +.+..++.+|.=+|. .++.+++ |+|||-++.+
T Consensus 89 ~~~ri~i~VS--K~~HCL~DLL~r~~~----g~L~~eI~~VIsNH~---------------dl~~~v~~~~IPfhhip~~ 147 (287)
T COG0788 89 QRKRIAILVS--KEDHCLGDLLYRWRI----GELPAEIVAVISNHD---------------DLRPLVERFDIPFHHIPVT 147 (287)
T ss_pred cCceEEEEEe--chHHHHHHHHHHHhc----CCcCCceEEEEcCCH---------------HHHHHHHHcCCCeeeccCC
Confidence 3467888886 778888888866432 346667766643322 1445554 9999999887
No 162
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.95 E-value=95 Score=29.52 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=25.9
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI 147 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v 147 (521)
+||+|++||+..+.-..++++. |. +.++++.++
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~-L~-----~~g~~V~vv 34 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQ-LT-----KRGYQVTVL 34 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHH-HH-----HCCCEEEEE
Confidence 5899999999999998888876 43 246777665
No 163
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.81 E-value=1e+02 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=25.6
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
+||+|++||+....-..++++. |. +.++++.++.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~-L~-----~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQ-LT-----KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH-HH-----HCCCEEEEEE
Confidence 3799999999988888888765 53 2467777664
No 164
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=21.11 E-value=81 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=27.9
Q ss_pred ccccccCCCCceEEecCCcccchHHHH--HHHHHHHHHHHhhcC
Q psy3867 62 KLCPRCNTNNGEVVLRLKDIYCKACLL--QYLNHKFRAALGKSK 103 (521)
Q Consensus 62 ~~C~kCk~~~a~i~~r~~~~~Cr~CF~--~~i~~Kfr~~L~k~k 103 (521)
..|.+|+. ..+. .+..+|..|+. +....++++.|+++.
T Consensus 4 ~nC~~Cgk-lF~~---~~~~iCp~C~~~~e~~f~kV~~yLr~~p 43 (137)
T TIGR03826 4 ANCPKCGR-LFVK---TGRDVCPSCYEEEEREFEKVYKFLRKHE 43 (137)
T ss_pred ccccccch-hhhh---cCCccCHHHhHHHHHHHHHHHHHHHHCC
Confidence 57999997 2322 25679999997 456678888898753
No 165
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=20.83 E-value=68 Score=24.04 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=18.0
Q ss_pred cccccCCCCceE---EecCCcccchHHHHHH
Q psy3867 63 LCPRCNTNNGEV---VLRLKDIYCKACLLQY 90 (521)
Q Consensus 63 ~C~kCk~~~a~i---~~r~~~~~Cr~CF~~~ 90 (521)
.|..|+..-.-. .+..+ ..|.+|+...
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHh
Confidence 488998743333 34444 7999999654
No 166
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=20.52 E-value=6.9e+02 Score=23.39 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCeEEecc
Q psy3867 236 LLLQAAKKLNCTKIFTAE 253 (521)
Q Consensus 236 lL~~~A~~lg~~~V~tGh 253 (521)
++..+|+++|++.|+-|-
T Consensus 73 Llvd~ak~~~a~~ivRGL 90 (159)
T COG0669 73 LLVDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 566899999999999883
Done!