Query psy3867
Match_columns 521
No_of_seqs 266 out of 2086
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:28:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wy5_A TILS, hypothetical UPF0 100.0 9.2E-31 3.1E-35 268.1 23.2 229 86-361 2-233 (317)
2 3a2k_A TRNA(Ile)-lysidine synt 100.0 3.6E-30 1.2E-34 276.6 25.2 227 92-361 2-231 (464)
3 1ni5_A Putative cell cycle pro 100.0 1.1E-27 3.7E-32 255.2 18.1 208 104-361 9-220 (433)
4 2dpl_A GMP synthetase, GMP syn 99.8 8.4E-20 2.9E-24 186.0 21.1 209 84-347 3-227 (308)
5 3tqi_A GMP synthase [glutamine 99.8 3E-19 1E-23 194.4 12.0 168 109-320 231-407 (527)
6 2der_A TRNA-specific 2-thiouri 99.8 2.1E-19 7.3E-24 187.9 6.1 205 105-347 14-232 (380)
7 3k32_A Uncharacterized protein 99.8 5.6E-19 1.9E-23 169.4 6.9 155 109-320 7-163 (203)
8 2hma_A Probable tRNA (5-methyl 99.8 3E-19 1E-23 186.6 5.4 203 107-347 8-224 (376)
9 1sur_A PAPS reductase; assimil 99.7 1E-17 3.4E-22 161.7 11.6 167 92-314 33-201 (215)
10 2ywb_A GMP synthase [glutamine 99.7 7.9E-17 2.7E-21 174.5 19.2 175 86-314 194-374 (503)
11 3bl5_A Queuosine biosynthesis 99.7 3.5E-18 1.2E-22 164.4 5.4 166 108-313 3-177 (219)
12 2c5s_A THII, probable thiamine 99.7 1.8E-16 6E-21 167.8 16.7 156 108-313 187-345 (413)
13 3uow_A GMP synthetase; structu 99.7 6.2E-16 2.1E-20 169.2 16.9 179 94-319 244-435 (556)
14 1zun_A Sulfate adenylyltransfe 99.7 3E-16 1E-20 160.8 12.1 182 89-315 33-226 (325)
15 1gpm_A GMP synthetase, XMP ami 99.7 1.3E-15 4.6E-20 165.7 17.2 161 109-313 228-395 (525)
16 1k92_A Argininosuccinate synth 99.6 4.7E-15 1.6E-19 157.3 16.4 167 104-315 6-184 (455)
17 2pg3_A Queuosine biosynthesis 99.6 2.9E-15 9.8E-20 146.0 13.7 165 109-313 3-181 (232)
18 2o8v_A Phosphoadenosine phosph 99.6 1E-15 3.5E-20 151.5 10.5 166 93-314 35-202 (252)
19 2e18_A NH(3)-dependent NAD(+) 99.6 3.7E-15 1.3E-19 147.7 13.9 164 89-313 7-172 (257)
20 3p52_A NH(3)-dependent NAD(+) 99.6 4E-15 1.4E-19 147.0 14.0 161 91-312 13-175 (249)
21 1kor_A Argininosuccinate synth 99.6 6E-15 2.1E-19 155.1 15.7 157 109-315 1-166 (400)
22 1xng_A NH(3)-dependent NAD(+) 99.6 1.4E-14 4.9E-19 144.5 12.8 149 108-313 25-175 (268)
23 2oq2_A Phosphoadenosine phosph 99.5 2.4E-14 8.1E-19 142.4 13.0 171 92-314 31-207 (261)
24 2nz2_A Argininosuccinate synth 99.5 3.8E-14 1.3E-18 149.4 15.2 158 108-316 5-175 (413)
25 2vxo_A GMP synthase [glutamine 99.5 1.9E-14 6.3E-19 160.9 13.4 186 108-314 240-435 (697)
26 3fiu_A NH(3)-dependent NAD(+) 99.5 3.7E-14 1.3E-18 140.1 13.5 167 89-312 14-184 (249)
27 1vl2_A Argininosuccinate synth 99.5 4.2E-13 1.4E-17 140.9 14.8 157 108-315 14-183 (421)
28 2wsi_A FAD synthetase; transfe 99.4 2.7E-13 9.1E-18 137.9 10.0 185 63-313 6-213 (306)
29 2goy_A Adenosine phosphosulfat 99.4 3.5E-12 1.2E-16 127.7 14.7 169 92-314 43-216 (275)
30 1kqp_A NAD+ synthase, NH(3)-de 99.2 7.2E-11 2.5E-15 117.9 14.6 176 87-313 21-200 (271)
31 1wxi_A NH(3)-dependent NAD(+) 99.2 1.3E-10 4.4E-15 116.3 14.4 179 85-313 20-203 (275)
32 3q4g_A NH(3)-dependent NAD(+) 99.2 3.2E-10 1.1E-14 113.5 15.2 185 83-313 19-212 (279)
33 3dpi_A NAD+ synthetase; ssgcid 99.2 8.4E-11 2.9E-15 117.9 10.5 181 87-313 29-212 (285)
34 1vbk_A Hypothetical protein PH 99.1 5.5E-11 1.9E-15 120.8 8.1 121 108-311 179-307 (307)
35 3n05_A NH(3)-dependent NAD(+) 99.1 2.1E-10 7.1E-15 126.5 12.1 160 89-310 311-473 (590)
36 3fwk_A FMN adenylyltransferase 98.8 2.5E-08 8.6E-13 100.4 13.8 163 89-314 33-217 (308)
37 3ilv_A Glutamine-dependent NAD 98.7 7.2E-08 2.5E-12 107.1 13.6 177 92-312 291-505 (634)
38 3sdb_A Glutamine-dependent NAD 98.6 3.4E-07 1.2E-11 102.3 15.1 169 90-309 347-521 (680)
39 3rjz_A N-type ATP pyrophosphat 98.5 4E-07 1.4E-11 88.8 10.8 138 109-316 5-145 (237)
40 4f4h_A Glutamine dependent NAD 98.1 3E-05 1E-09 84.8 14.2 173 82-310 279-453 (565)
41 1ct9_A Asparagine synthetase B 97.9 0.00011 3.7E-09 80.3 13.8 138 90-259 210-354 (553)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 97.7 0.00012 4.2E-09 78.9 11.1 129 89-259 221-351 (503)
43 1jgt_A Beta-lactam synthetase; 97.7 0.00018 6.1E-09 77.9 11.9 130 88-259 223-354 (513)
44 3hgm_A Universal stress protei 91.3 0.86 3E-05 38.9 8.9 39 109-152 3-41 (147)
45 2dum_A Hypothetical protein PH 90.1 3.5 0.00012 36.2 12.1 39 108-151 5-43 (170)
46 3s3t_A Nucleotide-binding prot 89.8 3 0.0001 35.4 11.1 39 109-152 6-44 (146)
47 3idf_A USP-like protein; unive 89.3 2.1 7.3E-05 36.1 9.7 41 109-153 2-42 (138)
48 1tq8_A Hypothetical protein RV 89.2 2.2 7.5E-05 37.7 10.0 39 106-150 15-55 (163)
49 3tnj_A Universal stress protei 88.7 6.2 0.00021 33.6 12.4 40 108-152 6-45 (150)
50 3dlo_A Universal stress protei 88.0 6.5 0.00022 34.3 12.2 66 109-180 25-96 (155)
51 1mjh_A Protein (ATP-binding do 87.8 3.5 0.00012 35.8 10.3 39 108-151 5-43 (162)
52 2z08_A Universal stress protei 86.4 6.9 0.00024 32.8 11.1 38 109-151 3-40 (137)
53 3fdx_A Putative filament prote 86.0 3.3 0.00011 35.0 8.8 39 109-152 2-42 (143)
54 3loq_A Universal stress protei 85.4 6.1 0.00021 38.1 11.5 93 107-257 169-263 (294)
55 3fg9_A Protein of universal st 83.5 7.4 0.00025 33.5 10.1 40 108-152 15-56 (156)
56 2gm3_A Unknown protein; AT3G01 82.8 7.7 0.00026 34.1 10.2 41 109-151 6-55 (175)
57 1jmv_A USPA, universal stress 81.5 20 0.00069 29.8 12.0 37 109-150 3-39 (141)
58 3mt0_A Uncharacterized protein 78.4 20 0.0007 34.2 12.3 41 107-152 133-180 (290)
59 2p09_A A non-biological ATP bi 77.6 1.9 6.5E-05 32.5 3.3 32 60-91 21-56 (81)
60 3olq_A Universal stress protei 74.2 43 0.0015 32.2 13.4 33 236-268 257-290 (319)
61 3nbm_A PTS system, lactose-spe 71.2 10 0.00035 31.7 6.8 71 108-184 6-87 (108)
62 3mt0_A Uncharacterized protein 66.5 15 0.0005 35.3 7.9 62 108-181 7-70 (290)
63 3olq_A Universal stress protei 64.7 22 0.00074 34.3 8.8 38 109-151 8-45 (319)
64 2d8v_A Zinc finger FYVE domain 57.0 8.8 0.0003 29.3 3.2 28 62-90 9-38 (67)
65 3d00_A Tungsten formylmethanof 52.5 2.4 8.3E-05 39.4 -0.6 47 32-88 140-186 (191)
66 1e2b_A Enzyme IIB-cellobiose; 52.0 19 0.00064 29.8 5.0 40 109-153 4-43 (106)
67 3j20_P 30S ribosomal protein S 50.6 16 0.00053 27.1 3.6 29 61-91 18-47 (56)
68 2gvi_A Conserved hypothetical 50.0 5.6 0.00019 37.2 1.5 32 58-89 169-202 (204)
69 3loq_A Universal stress protei 49.2 24 0.00081 33.8 6.0 40 107-151 21-60 (294)
70 3u5c_d S36, YS29, 40S ribosoma 46.7 15 0.00051 27.2 3.0 29 62-91 19-47 (56)
71 3ab8_A Putative uncharacterize 45.3 30 0.001 32.4 6.0 38 109-151 1-38 (268)
72 2xzm_N RPS29E; ribosome, trans 39.6 20 0.0007 26.3 2.8 29 61-91 17-46 (55)
73 2d8x_A Protein pinch; LIM doma 37.8 19 0.00064 26.8 2.5 29 62-90 32-62 (70)
74 3zqu_A Probable aromatic acid 35.7 41 0.0014 31.4 5.1 34 108-147 4-37 (209)
75 1q77_A Hypothetical protein AQ 35.1 35 0.0012 28.3 4.1 37 109-150 5-41 (138)
76 2cur_A Skeletal muscle LIM-pro 35.0 27 0.00093 25.8 3.1 30 62-91 32-63 (69)
77 1x61_A Thyroid receptor intera 34.7 30 0.001 25.8 3.3 30 62-91 34-65 (72)
78 3ab8_A Putative uncharacterize 34.3 1.1E+02 0.0038 28.3 8.1 63 107-180 153-217 (268)
79 2dar_A PDZ and LIM domain prot 32.2 23 0.00078 27.9 2.3 29 62-90 52-82 (90)
80 3nwp_A 6-phosphogluconolactona 30.2 80 0.0027 29.7 6.2 69 89-173 23-92 (233)
81 1x62_A C-terminal LIM domain p 29.9 25 0.00086 26.9 2.1 29 62-90 42-72 (79)
82 3iz6_N 40S ribosomal protein S 29.8 16 0.00054 27.0 0.8 28 61-90 18-46 (56)
83 3lwd_A 6-phosphogluconolactona 28.2 83 0.0028 29.5 5.9 53 90-155 20-73 (226)
84 1x4k_A Skeletal muscle LIM-pro 27.8 36 0.0012 25.2 2.7 29 62-90 34-64 (72)
85 2l4z_A DNA endonuclease RBBP8, 27.7 21 0.0007 30.4 1.3 16 74-89 105-120 (123)
86 3f6q_B LIM and senescent cell 27.5 29 0.00099 25.6 2.0 29 62-90 40-70 (72)
87 2vqe_N 30S ribosomal protein S 27.2 45 0.0015 24.9 3.0 29 60-91 20-48 (61)
88 3lhi_A Putative 6-phosphogluco 27.1 83 0.0028 29.5 5.7 69 89-173 20-89 (232)
89 1x64_A Alpha-actinin-2 associa 26.8 30 0.001 27.2 2.1 28 63-90 53-82 (89)
90 1wig_A KIAA1808 protein; LIM d 26.6 30 0.001 26.1 2.0 28 62-89 32-62 (73)
91 2dj7_A Actin-binding LIM prote 26.5 25 0.00087 27.2 1.6 28 63-90 44-72 (80)
92 1nyp_A Pinch protein; LIM doma 26.4 28 0.00095 25.5 1.7 29 62-90 32-62 (66)
93 1p3y_1 MRSD protein; flavoprot 26.0 43 0.0015 30.9 3.3 35 108-148 8-42 (194)
94 2l2q_A PTS system, cellobiose- 25.6 57 0.0019 26.8 3.7 37 109-150 5-41 (109)
95 2ejb_A Probable aromatic acid 25.4 68 0.0023 29.3 4.6 33 109-147 2-34 (189)
96 1qzu_A Hypothetical protein MD 25.3 48 0.0016 30.8 3.5 36 107-148 18-54 (206)
97 1wyh_A SLIM 2, skeletal muscle 25.1 38 0.0013 25.1 2.4 29 62-90 34-64 (72)
98 2l3k_A Rhombotin-2, linker, LI 25.1 52 0.0018 27.5 3.4 30 62-91 37-69 (123)
99 1x63_A Skeletal muscle LIM-pro 25.0 43 0.0015 25.6 2.7 29 62-90 44-74 (82)
100 2d8z_A Four and A half LIM dom 24.8 36 0.0012 25.1 2.2 29 62-90 32-62 (70)
101 3tx2_A Probable 6-phosphogluco 24.5 1.2E+02 0.0043 28.7 6.4 71 89-173 25-96 (251)
102 3qjg_A Epidermin biosynthesis 24.3 59 0.002 29.4 3.9 34 109-148 6-39 (175)
103 3oc6_A 6-phosphogluconolactona 24.0 1.2E+02 0.0042 28.7 6.3 71 89-173 25-96 (248)
104 3e15_A Glucose-6-phosphate 1-d 23.7 1.9E+02 0.0066 28.5 7.8 46 105-154 56-102 (312)
105 1x4l_A Skeletal muscle LIM-pro 23.7 34 0.0012 25.5 1.8 28 62-89 36-65 (72)
106 1g63_A Epidermin modifying enz 23.7 55 0.0019 29.8 3.5 34 109-148 3-36 (181)
107 3lqk_A Dipicolinate synthase s 23.2 55 0.0019 30.3 3.5 36 107-148 6-42 (201)
108 2eqe_A Tumor necrosis factor, 22.7 75 0.0026 22.3 3.1 13 78-90 30-42 (48)
109 2iyb_E Testin, TESS, TES; LIM 22.5 30 0.001 25.4 1.2 28 62-89 33-63 (65)
110 3ico_A 6PGL, 6-phosphogluconol 22.1 1.4E+02 0.0049 28.6 6.4 71 89-173 41-112 (268)
111 1g47_A Pinch protein; LIM doma 22.1 36 0.0012 25.7 1.6 29 62-90 40-70 (77)
112 1sbz_A Probable aromatic acid 21.5 97 0.0033 28.6 4.8 33 110-148 2-35 (197)
113 2cuq_A Four and A half LIM dom 21.4 53 0.0018 24.9 2.6 29 62-90 42-72 (80)
114 1tqe_X Histone deacetylase 9; 20.8 19 0.00064 22.1 -0.2 12 510-521 9-20 (26)
115 1x3h_A Leupaxin; paxillin fami 20.8 60 0.002 24.6 2.7 29 62-90 42-72 (80)
116 3czc_A RMPB; alpha/beta sandwi 20.2 1.3E+02 0.0045 24.5 4.9 24 109-132 19-43 (110)
No 1
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.97 E-value=9.2e-31 Score=268.11 Aligned_cols=229 Identities=17% Similarity=0.132 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhccccccee-EEEEEEeCCCCCccChHHHHH
Q psy3867 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFS-VCAIYIDDGSISQVSISERKA 164 (521)
Q Consensus 86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~-v~~v~ID~g~~~~~s~~e~~~ 164 (521)
|....+.++|+++|.+++++.++++|+||+|||+||++||+++.+.. ++.+++ +.++|||+|.+ + +..+
T Consensus 2 ~~~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~-----~~~g~~~v~av~vd~g~r-~----~s~~ 71 (317)
T 1wy5_A 2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLK-----NYFSLKEVALAHFNHMLR-E----SAER 71 (317)
T ss_dssp CHHHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHST-----TTTTCSEEEEEEEECCSS-T----HHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHH-----HHcCCCEEEEEEEECCCC-c----ccHH
Confidence 66778899999999999999999999999999999999999997621 235788 99999999974 1 2234
Q ss_pred HHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867 165 NNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK 242 (521)
Q Consensus 165 ~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~ 242 (521)
+.+.++++|+ |+|+++++++. ..+.... ..+.|..++.+|+..|.++|+
T Consensus 72 ~~~~v~~~a~~lgi~~~v~~~~~-------~~~~~~~----------------------~~~~e~~ar~~Ry~~l~~~a~ 122 (317)
T 1wy5_A 72 DEEFCKEFAKERNMKIFVGKEDV-------RAFAKEN----------------------RMSLEEAGRFLRYKFLKEILE 122 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCH-------HHHHHHT----------------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEec-------hhhhccC----------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 5778999998 99999998762 1111000 124678889999999999999
Q ss_pred hcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCC
Q psy3867 243 KLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATL 322 (521)
Q Consensus 243 ~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~ 322 (521)
++|+++|++|||+||.++++|+++.+|.|. .+..++... . ..++|||.+++++||..|++..|+|++.++|+..
T Consensus 123 ~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~--~gl~~~~~~-~--~~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~- 196 (317)
T 1wy5_A 123 SEGFDCIATAHHLNDLLETSLLFFTRGTGL--DGLIGFLPK-E--EVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE- 196 (317)
T ss_dssp HTTCSEEECCCCHHHHHHHHHHHHHHCCCH--HHHHCSCSE-E--TTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGT-
T ss_pred HcCCCEEEEeCchhHHHHHHHHHHHhCCCc--ccccCCCCC-C--CeEECCCccCCHHHHHHHHHHcCCCeeECCCCCC-
Confidence 999999999999999999999999999872 112222111 1 2689999999999999999999999999998863
Q ss_pred CCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhh
Q psy3867 323 ADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLD 361 (521)
Q Consensus 323 ~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~ 361 (521)
..+.++++++++++.|++.+|++..+++|+++++...
T Consensus 197 --~~~~Rn~iR~~~lp~L~~~~p~~~~~l~~~~~~~~~~ 233 (317)
T 1wy5_A 197 --VSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAE 233 (317)
T ss_dssp --CCHHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHH
Confidence 4578888888999999999999999999999999865
No 2
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.97 E-value=3.6e-30 Score=276.64 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=187.4
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT 171 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~ 171 (521)
.+||+++|.+++++.++++|+||||||+||++||+++.+.. ++.++++.++|||+|.+ + .+..++.+.+++
T Consensus 2 ~~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~-----~~~~~~v~avhvdhglr-g---~~s~~~~~~v~~ 72 (464)
T 3a2k_A 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLR-----DEWKLQVIAAHVDHMFR-G---RESEEEMEFVKR 72 (464)
T ss_dssp CSHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHH-----HTTTCBCEEEEEECTTC-T---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHH-----HHcCCeEEEEEEECCCC-c---cccHHHHHHHHH
Confidence 35899999999999999999999999999999999998732 23578999999999974 1 123346788999
Q ss_pred Hhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeE
Q psy3867 172 AMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKI 249 (521)
Q Consensus 172 ~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V 249 (521)
+|+ |+|+++++++. ..|.... ..+.|..++.+|+++|.++|+++|+++|
T Consensus 73 ~~~~lgi~~~v~~~~~-------~~~~~~~----------------------~~~~e~~aR~~Ry~~l~~~a~~~g~~~I 123 (464)
T 3a2k_A 73 FCVERRILCETAQIDV-------PAFQRSA----------------------GLGAQEAARICRYRFFAELMEKHQAGYV 123 (464)
T ss_dssp HHHHTTCEEEEEECCC-------HHHHTTT----------------------TCCSHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHcCCcEEEEEech-------hhhhhcc----------------------CCCHHHHHHHHHHHHHHHHHHHcCcCEE
Confidence 998 99999998862 1121110 1135788999999999999999999999
Q ss_pred EeccCcchhHHHHHHHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhH
Q psy3867 250 FTAETQTDLATKIIANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLAS 328 (521)
Q Consensus 250 ~tGh~~dDlA~~~L~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~S 328 (521)
++|||+||+++++|+++.+|.|. .|.++.... ..++..++|||.+++++||..|++.+|++++.++|+.. ..+.
T Consensus 124 atgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~--~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~---~~~~ 198 (464)
T 3a2k_A 124 AVGHHGDDQVETILMRLVRGSTSKGYAGIPVKR--PFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEK---DDYT 198 (464)
T ss_dssp ECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEE--ECSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCC---TTSH
T ss_pred EEeCChHHHHHHHHHHHHcCCCcccccCCCccc--cCCCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCC---ccch
Confidence 99999999999999999999883 343332211 12346899999999999999999999999999998863 4578
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhh
Q psy3867 329 LQKAAESFVTDLQTNFPSTVSTVFRTADKLSLD 361 (521)
Q Consensus 329 i~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~ 361 (521)
++++++++++.|++.+|++..+++|+++++...
T Consensus 199 Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~~~~ 231 (464)
T 3a2k_A 199 RNRFRHHIVPLLRQENPRLHERFQQYSEMMAED 231 (464)
T ss_dssp HHHHHHTHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.95 E-value=1.1e-27 Score=255.18 Aligned_cols=208 Identities=17% Similarity=0.119 Sum_probs=168.7
Q ss_pred CCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccc-cceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEE
Q psy3867 104 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKR-ILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYF 180 (521)
Q Consensus 104 li~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr-~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~i 180 (521)
++.++++|+||||||+||++||+++.+.. ++ .++++.++|||+|... . ..++.+.++++|+ |+|+++
T Consensus 9 ~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~-----~~~~g~~v~avhvdhglr~-~----s~~~~~~v~~~~~~lgi~~~v 78 (433)
T 1ni5_A 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWR-----TENPGVALRAIHVHHGLSA-N----ADAWVTHCENVCQQWQVPLVV 78 (433)
T ss_dssp HHTTCSEEEEECCSBHHHHHHHHHHHHHH-----TTSTTCEEEEEEECCSCCS-S----HHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEEEEcchHHHHHHHHHHHHHH-----HhcCCCeEEEEEEECCCCc-c----cHHHHHHHHHHHHHcCCcEEE
Confidence 35678899999999999999999998732 12 6799999999999752 2 2235678999998 999999
Q ss_pred EEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHH
Q psy3867 181 TCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLAT 260 (521)
Q Consensus 181 v~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~ 260 (521)
++++.. ..+ .+.|..++.+|+.+|.++|+ ++++|++|||+||+++
T Consensus 79 ~~~~~~-----------~~~----------------------~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aE 123 (433)
T 1ni5_A 79 ERVQLA-----------QEG----------------------LGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCE 123 (433)
T ss_dssp ECCCCC-----------CSS----------------------STTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHH
T ss_pred EEecCC-----------CCC----------------------CCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHH
Confidence 988631 000 12345678999999999987 4999999999999999
Q ss_pred HHHHHHhcCCCC-CCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCChhHHHHHHHHHHHH
Q psy3867 261 KIIANISLGKGA-HVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTD 339 (521)
Q Consensus 261 ~~L~nl~~GrG~-~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~~~Si~~l~~~fI~~ 339 (521)
++|+++.+|.|. .++.+.... ..+++.++|||.+++++||..|++.+|++++.++|+.. ..+.++++++++++.
T Consensus 124 t~L~~l~RG~g~~gL~gm~~~~--~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~---~~~~Rn~iR~~~lp~ 198 (433)
T 1ni5_A 124 TFLLALKRGSGPAGLSAMAEVS--EFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQD---DSYDRNFLRLRVVPL 198 (433)
T ss_dssp HHHHHHTTTCCTTGGGCCCSEE--EETTEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGG---TTSHHHHHHHTHHHH
T ss_pred HHHHHHHcCCCcccccCCCCcc--ccCCceEEccCccCCHHHHHHHHHHcCCCeEECCCCCC---cccchHHHHHHHHHH
Confidence 999999999873 233322211 12457899999999999999999999999999999863 357888999999999
Q ss_pred HHHHCCCHHHHHHHHHHHhhhh
Q psy3867 340 LQTNFPSTVSTVFRTADKLSLD 361 (521)
Q Consensus 340 Le~~~Pstv~tV~rT~~KL~~~ 361 (521)
|++.||++..++.|+++++...
T Consensus 199 L~~~~p~~~~~l~r~~~~~~~~ 220 (433)
T 1ni5_A 199 LQQRWPHFAEATARSAALCAEQ 220 (433)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 4
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.84 E-value=8.4e-20 Score=186.05 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHH
Q psy3867 84 KACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERK 163 (521)
Q Consensus 84 r~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~ 163 (521)
.+||.+.....+|+.++ +++|+|++|||+||+++|+++++. +|+++.++|||+|.... .
T Consensus 3 ~~~~~~~~~~~ir~~v~-------~~kvlvalSGGvDSsvla~ll~~~--------~g~~v~av~vd~g~~~~---~--- 61 (308)
T 2dpl_A 3 WGRFVEEKVREIRETVG-------DSKAIIALSGGVDSSTAAVLAHKA--------IGDRLHAVFVNTGFLRK---G--- 61 (308)
T ss_dssp HHHHHHHHHHHHHHHHT-------TSCEEEECCSSHHHHHHHHHHHHH--------HGGGEEEEEEECSCCCT---T---
T ss_pred HHHHHHHHHHHHHHHhC-------CCCEEEEEeChHHHHHHHHHHHHh--------hCCCEEEEEEcCCCCCh---H---
Confidence 35788888888888775 368999999999999999999873 36789999999997421 1
Q ss_pred HHHHHHHH-Hhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHH
Q psy3867 164 ANNAQIAT-AMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQA 240 (521)
Q Consensus 164 ~~l~~v~~-~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~ 240 (521)
+.+.+++ +++ |++++++++++.|. ....+. .....++.+|...+++++.++
T Consensus 62 -e~~~~~~~~a~~lgi~~~vv~~~~~f~-------~~l~~~------------------~~pe~~~~~~~~~~~~~l~~~ 115 (308)
T 2dpl_A 62 -EPEFVVKTFRDEFGMNLHYVDAQDRFF-------SALKGV------------------TDPEEKRKIIGRVFIEVFEEV 115 (308)
T ss_dssp -HHHHHHHHHTTTTCCEEEEEECHHHHH-------HHTTTC------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCcEEEEECCHHHH-------HhhhCC------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 2344666 454 99999999875321 000010 011124567788899999999
Q ss_pred HHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce---ecC
Q psy3867 241 AKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV---HVP 317 (521)
Q Consensus 241 A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~---~~~ 317 (521)
|+++|+++|++||+.+|++++.. .-.++....++. ...++.++|||++++++||+.|++.+|+|+. ..|
T Consensus 116 A~~~g~~~la~Gh~~dD~~Et~~------~iks~~~~~~l~--~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P 187 (308)
T 2dpl_A 116 AKKIGAEYLIQGTIAPDWIESQG------KIKSHHNVGGLP--EKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMP 187 (308)
T ss_dssp HHHHTCSEEECCCCCC-----------------------------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCC
T ss_pred HHHcCcCEEEECCCCccchhhcc------chhhhhccccCC--ccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecCC
Confidence 99999999999999999998732 011111111121 1345789999999999999999999999963 223
Q ss_pred CCCCC--------CC-C-hhHHHHHHHHHHHHHHHHCCCH
Q psy3867 318 SLATL--------AD-P-LASLQKAAESFVTDLQTNFPST 347 (521)
Q Consensus 318 ~~~~~--------~~-~-~~Si~~l~~~fI~~Le~~~Pst 347 (521)
++... .. . ...++...+.++..|++.||..
T Consensus 188 ~~~~~La~R~~g~~t~~~l~~~r~~~~~l~~~~~~~~~~~ 227 (308)
T 2dpl_A 188 FPGPGLAVRVIGEVTPEKIRIVREANAIVEEEVERAGLRP 227 (308)
T ss_dssp CCTTGGGGGBSSSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcccccccccCcccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33210 00 0 1133444455666777777765
No 5
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.78 E-value=3e-19 Score=194.42 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=114.4
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH-Hhc--cCCEEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT-AMK--YFDSYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~-~~e--g~p~~iv~l~e 185 (521)
++|+||||||+||+++|+++++. +|+++.++|||+|... .. +.+.+.+ +++ |++++++++++
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~--------~G~~v~av~vd~g~~~---~~----e~~~~~~~~a~~lgi~~~vv~~~~ 295 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA--------IGDQLVCVLVDTGLLR---LN----EVDEVLNVFQKHLGAKVICVDAKD 295 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH--------HGGGEEEEEECCSCSC---TT----HHHHHHHHHTTSSCCEEEEECCHH
T ss_pred CeEEEEEecCcCHHHHHHHHHHH--------hCCeEEEEEeccCCCC---hh----HHHHHHHHHHHHcCCcEEEEeChH
Confidence 68999999999999999999873 3678999999999742 11 2334444 777 99999999886
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
.|... ..+. .+...++.+|...+++++.++|+++|+++|++|||.+|++++.+.+
T Consensus 296 ~~~~~-------l~g~------------------~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~ 350 (527)
T 3tqi_A 296 RFMKA-------LKGI------------------SDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTK 350 (527)
T ss_dssp HHHSS-------SSSC------------------CCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC----
T ss_pred HHHHh-------hcCC------------------CChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccC
Confidence 43210 0111 0111246678888899999999999999999999999999988766
Q ss_pred HhcCCCCCCCCC---CcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc---eecCCCC
Q psy3867 266 ISLGKGAHVPLD---VGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP---VHVPSLA 320 (521)
Q Consensus 266 l~~GrG~~l~~~---~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~---~~~~~~~ 320 (521)
. |++..+... .++.. ..++.++|||++++|+||+.|++.+|+|+ +..|++.
T Consensus 351 ~--g~~~~ik~~~~l~gl~~--~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p~ 407 (527)
T 3tqi_A 351 T--GKGHIIKTHHNVGGLPL--NMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPG 407 (527)
T ss_dssp --------------------------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCCT
T ss_pred C--ChhheeeeecccccCcc--cccCccccchhcCCHHHHHHHHHHcCCChhhhccCCCCC
Confidence 2 333323221 12211 23467999999999999999999999998 4556554
No 6
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.76 E-value=2.1e-19 Score=187.93 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=133.1
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccCh-HHHHHHHHHHHHHhc--cCCEEEE
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSI-SERKANNAQIATAMK--YFDSYFT 181 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~-~e~~~~l~~v~~~~e--g~p~~iv 181 (521)
-.++++|+||+|||+||+++|++|++ .++++.++|++++...+... ....++++.++++|+ |+|++++
T Consensus 14 ~~~~~kVvVa~SGGvDSsv~a~lL~~---------~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vv 84 (380)
T 2der_A 14 SETAKKVIVGMSGGVDSSVSAWLLQQ---------QGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTV 84 (380)
T ss_dssp ---CCEEEEECCSCSTTHHHHHHHHT---------TCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCEEEEEEEChHHHHHHHHHHHH---------cCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 34578999999999999999999975 47999999999875311000 112346788999998 9999999
Q ss_pred EcccccCCch----hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHH-HHHHHHHHHHHh-cCCCeEEeccCc
Q psy3867 182 CLEQALEPDN----MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQT-LRQNLLLQAAKK-LNCTKIFTAETQ 255 (521)
Q Consensus 182 ~l~evf~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~-lR~~lL~~~A~~-lg~~~V~tGh~~ 255 (521)
++++.|.... .+.|... . ..++|.+|++ +|++.|.++|++ +|+++|+|||++
T Consensus 85 d~~~~f~~~v~~~~~~ey~~G---------------------~-tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 85 NFAAEYWDNVFELFLAEYKAG---------------------R-TPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp ECHHHHHHHTHHHHHHHHHTT---------------------C-CCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred eCcHHHHHHHHHHHHHHHHcC---------------------C-CCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 9985432100 0111100 0 1257888976 589999999998 999999999999
Q ss_pred chhHHHHHHHHhcCCCCCCCCCCc-CCCC-CCCC-eeeeecCCCCCHHHHHHHHHHCCCCceecCCCCC--CCCChhHHH
Q psy3867 256 TDLATKIIANISLGKGAHVPLDVG-FSDD-RTGD-IITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLAT--LADPLASLQ 330 (521)
Q Consensus 256 dDlA~~~L~nl~~GrG~~l~~~~~-~~d~-~~~~-v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~--~~~~~~Si~ 330 (521)
+|.+++.+.++.+|.+ ...+.. |... ..++ ..++|||.+++++||+.|++.+||++...|.+.. ..+ +
T Consensus 143 ~d~~~~~~~~l~rg~~--~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~~-----~ 215 (380)
T 2der_A 143 RRADVDGKSRLLRGLD--SNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIG-----E 215 (380)
T ss_dssp EEEEETTEEEEECCSS--TTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC--------------------
T ss_pred ccccccchHHHhcccc--cccccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccccC-----c
Confidence 9987655555555533 122111 1110 0112 5799999999999999999999999876553321 111 1
Q ss_pred HHHHHHHHHHHHHCCCH
Q psy3867 331 KAAESFVTDLQTNFPST 347 (521)
Q Consensus 331 ~l~~~fI~~Le~~~Pst 347 (521)
+..++||..+....|+.
T Consensus 216 ~~~~~fL~~~~~~~pG~ 232 (380)
T 2der_A 216 RKFREFLGRYLPAQPGK 232 (380)
T ss_dssp -CHHHHHHTTSCCCCCE
T ss_pred hHHHHHHHHhhhhCCCC
Confidence 23577887766666775
No 7
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=5.6e-19 Score=169.42 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=111.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQA 186 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ev 186 (521)
++|+|++|||+||+++|+++++ .++++.++|||+|... +++.++++++ |+|+++++++..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~---------~g~~v~~~~v~~~~~~---------~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK---------LGYNPHLITINFGVIP---------SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH---------TTEEEEEEEEECSSSC---------TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred CeEEEEEECcHHHHHHHHHHHH---------cCCCeEEEEEeCCCch---------HHHHHHHHHHHhCCCEEEEECCHH
Confidence 5899999999999999999865 4789999999999632 2356778887 999999998752
Q ss_pred cCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHH
Q psy3867 187 LEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANI 266 (521)
Q Consensus 187 f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl 266 (521)
+.....+... ..+ .++..|...++.+|.++|+ |+++|++|||+||++++++..-
T Consensus 69 ~~~~~~~~~~-~~~-----------------------~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~~g 122 (203)
T 3k32_A 69 IVEKAADMII-EHK-----------------------YPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSYSE 122 (203)
T ss_dssp HHHHHHHHHH-HHS-----------------------SSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCHHH
T ss_pred HHHHHHHHHH-hcC-----------------------CCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcchhh
Confidence 2100000000 000 1233466678888888887 9999999999999998653211
Q ss_pred hcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCC
Q psy3867 267 SLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA 320 (521)
Q Consensus 267 ~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~ 320 (521)
. .++. . ..++.++|||..++++||+.|++.+ +.|..+|++.
T Consensus 123 l----------~~~~-~-~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~ 163 (203)
T 3k32_A 123 I----------QSLE-M-RKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGT 163 (203)
T ss_dssp H----------HHHH-H-HHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC--
T ss_pred c----------cCcc-c-ccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCC
Confidence 1 1111 1 1247899999999999999999999 9999999875
No 8
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.75 E-value=3e-19 Score=186.62 Aligned_cols=203 Identities=14% Similarity=0.116 Sum_probs=135.3
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccCh-HHHHHHHHHHHHHhc--cCCEEEEEc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSI-SERKANNAQIATAMK--YFDSYFTCL 183 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~-~e~~~~l~~v~~~~e--g~p~~iv~l 183 (521)
++++|+|++|||+||+++|++|++ .++++.++|++++.....+. ....++++.++++|+ |+|++++++
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~---------~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE---------QGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH---------TTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH---------cCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 457999999999999999999976 47999999999885311000 012345778889998 999999999
Q ss_pred ccccCCch----hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHH-HHHHHHHHHHHHhcCCCeEEeccCcchh
Q psy3867 184 EQALEPDN----MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQ-TLRQNLLLQAAKKLNCTKIFTAETQTDL 258 (521)
Q Consensus 184 ~evf~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~-~lR~~lL~~~A~~lg~~~V~tGh~~dDl 258 (521)
++.|.... .+.|... . .-++|.+|. .+|+..|.++|+++|+++|+|||+++|.
T Consensus 79 ~~~~~~~v~~~~l~~y~~G---------------------~-tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~ 136 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAG---------------------R-TPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVA 136 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTT---------------------C-CCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEE
T ss_pred hHHHHHHHHHHHHHHHhcC---------------------C-CCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhh
Confidence 85432100 0011100 0 114788885 4568999999999999999999999998
Q ss_pred H-HHHHHHHhcCCCCCCCC-CCcCCCC-CC-CCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCC--CCCCChhHHHHH
Q psy3867 259 A-TKIIANISLGKGAHVPL-DVGFSDD-RT-GDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLA--TLADPLASLQKA 332 (521)
Q Consensus 259 A-~~~L~nl~~GrG~~l~~-~~~~~d~-~~-~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~--~~~~~~~Si~~l 332 (521)
+ ++.+.++.+|.+ ... ++-|... .. ....++|||.+++++||+.|++.+||++...|... +..+. . .
T Consensus 137 ~~~~~~~~l~rg~d--~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~~~-~----~ 209 (376)
T 2hma_A 137 RDEDGTVHMLRGVD--NGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGE-K----N 209 (376)
T ss_dssp ECSSSCEEEEECSS--TTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTT-S----C
T ss_pred hCCCchhhhhhccc--cccccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCccccCc-h----h
Confidence 7 444444444432 111 1111111 01 12578999999999999999999999986644221 11121 1 2
Q ss_pred HHHHHHHHHHHCCCH
Q psy3867 333 AESFVTDLQTNFPST 347 (521)
Q Consensus 333 ~~~fI~~Le~~~Pst 347 (521)
.++||..+....|+.
T Consensus 210 ~~~fL~~~~~~~pG~ 224 (376)
T 2hma_A 210 FKNFLSNYLPAQPGR 224 (376)
T ss_dssp HHHHHHTTSCCCCEE
T ss_pred HHHHHHHHhhcCCCC
Confidence 477777766556774
No 9
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.73 E-value=1e-17 Score=161.70 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=116.2
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT 171 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~ 171 (521)
...++.++.++ +++|+||||||+||++|||++.+. ++++.++|||+|... + ++.+++++
T Consensus 33 ~~~l~~~~~~~-----~~~v~Va~SGGkDS~vLL~ll~~~---------~~~v~~v~vd~g~~~---~----e~~~~v~~ 91 (215)
T 1sur_A 33 EGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI---------RPDIPVILTDTGYLF---P----ETYRFIDE 91 (215)
T ss_dssp HHHHHHHHHHC-----CSEEEEECCCCTTHHHHHHHHHHH---------STTCEEEEEECSCBC---H----HHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHHh---------CCCCeEEEeeCCCCC---H----HHHHHHHH
Confidence 34566666664 479999999999999999999862 356889999999732 1 35678888
Q ss_pred Hhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeE
Q psy3867 172 AMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKI 249 (521)
Q Consensus 172 ~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V 249 (521)
+++ |++++++..+..+ ..+....+ +. ... +...++..|..+|...|.++++++|+++|
T Consensus 92 ~~~~~gi~~~v~~~~~~~-----~~~~~~~g-~~--~~~------------~~~~~~~~~~~~K~~~l~~~~~~~~~~~i 151 (215)
T 1sur_A 92 LTDKLKLNLKVYRATESA-----AWQEARYG-KL--WEQ------------GVEGIEKYNDINKVEPMNRALKELNAQTW 151 (215)
T ss_dssp HHHHTTCEEEEEECSSCH-----HHHHHHHC-CG--GGS------------HHHHHHHHHHHHTHHHHHHHHHHTTEEEE
T ss_pred HHHHhCCcEEEEeCCCCH-----HHHHHhcC-CC--CCC------------CccHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 887 9999999876311 01100000 00 000 00123456777888899999999999999
Q ss_pred EeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 250 FTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 250 ~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++||+.+|... |. .++ .+ + ..+++.++|||.+|+++||+.|++.+|||+.
T Consensus 152 ~~G~r~dd~~~---------r~-~~~---~~-~-~~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~ 201 (215)
T 1sur_A 152 FAGLRREQSGS---------RA-NLP---VL-A-IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp ECCCCTTSSST---------TT-TCC---SE-E-EETTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred EEEeehhhhhh---------hc-CCC---cc-c-cCCCEEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 99999988432 11 111 11 1 1234788999999999999999999999875
No 10
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.73 E-value=7.9e-17 Score=174.53 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHH
Q psy3867 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKAN 165 (521)
Q Consensus 86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~ 165 (521)
.|.+....++|+.++ +++|+||+|||+||+++|+++++ .++++.++|||+|.... + +
T Consensus 194 ~~~~~~i~~ir~~~~-------~~kvvvalSGGvDSsvla~ll~~---------~g~~v~av~vd~g~~~~---~----e 250 (503)
T 2ywb_A 194 HVLEELLREVRERAG-------KDRVLLAVSGGVDSSTLALLLAK---------AGVDHLAVFVDHGLLRL---G----E 250 (503)
T ss_dssp HHHHHHHHHHHHHHT-------TSEEEEEECSSHHHHHHHHHHHH---------HTCEEEEEEEECSCSCT---T----H
T ss_pred hhhHHHHHhhhhhcc-------CccEEEEecCCcchHHHHHHHHH---------cCCeEEEEEEeCCCCCh---H----H
Confidence 444444444444442 36999999999999999999976 26899999999997421 1 3
Q ss_pred HHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 166 NAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 166 l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
.+.++++++ |+++++++.++.|.. .. .+. .....++.+|...+.+.|.++|++
T Consensus 251 ~~~v~~~~~~lgi~~~vv~~~~~f~~----~l---~g~------------------~~pe~~r~~~~~~~~~~l~~~A~~ 305 (503)
T 2ywb_A 251 REEVEGALRALGVNLLVVDAKERFLK----AL---KGV------------------EDPEEKRKIIGREFVAAFSQVARE 305 (503)
T ss_dssp HHHHHHHHHHTTCCEEEEECHHHHHH----HH---TTC------------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECcHHHHH----hh---cCC------------------CChHHHhhhhhHHHHHHHHHHHHh
Confidence 456777776 999999998853310 00 010 001124566777888999999999
Q ss_pred c-CCCeEEeccCcchhHHHHHHHHhcCCCCCCC---CCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 244 L-NCTKIFTAETQTDLATKIIANISLGKGAHVP---LDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 244 l-g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~---~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+ |+++|++||+.+|++++.+. |....+. ...++. . ..++.++|||++++|+||+.|++.+|+|+.
T Consensus 306 ~~g~~~la~G~~~~D~~Et~~~----g~~~~iks~~~l~~l~-~-~~~~~ii~PL~~l~K~EVr~~a~~~glp~~ 374 (503)
T 2ywb_A 306 RGPFRFLAQGTLYPDVIESAGG----HGAAKIKSHHNVGGLP-E-DLEFELLEPFRLLFKDEVRELALLLGLPDT 374 (503)
T ss_dssp HCCCSEEECCCCHHHHHC---------------------CCC-S-SCCCEEECTTTTCCHHHHHHHHHHTTCCHH
T ss_pred cCCCCEEEECCcCccchhhccC----Cccccccccccccccc-c-cccCceEehhhcCCHHHHHHHHHHcCCChh
Confidence 9 99999999999999987442 2111111 111221 1 235789999999999999999999999963
No 11
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.71 E-value=3.5e-18 Score=164.40 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=106.2
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
+++|+|+||||+||+++|+++.+ .++++.++|||+|... . ++.+.++++++ |++++++++++
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~---------~~~~v~~~~~~~~~~~---~----~e~~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALK---------EFEEVETVTFHYNQRH---S----QEVEVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH---------HCSEEEEEEEESSCTT---C----HHHHHHHHHHHTTCCCEEEEECGG
T ss_pred CCCEEEEccCcHHHHHHHHHHHH---------cCCceEEEEEeCCCCC---H----HHHHHHHHHHHHhCCCeEEEeChH
Confidence 46899999999999999999976 2478999999998632 1 23567888887 99999999875
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHH-HHHHHHHHhcCCCeEEeccCcchhHHH---
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQ-NLLLQAAKKLNCTKIFTAETQTDLATK--- 261 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~-~lL~~~A~~lg~~~V~tGh~~dDlA~~--- 261 (521)
+...... .+. ...+. .+ +. ..+..+++..++.+++ .++.++|+++|+++|++||+++|+++.
T Consensus 67 ~~~~~~~-~l~-~~~~~-----~~--~~-----~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~ 132 (219)
T 3bl5_A 67 LNQLAPN-ALT-RNDIE-----IE--VK-----DGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDC 132 (219)
T ss_dssp GGGGSTG-GGC---------------------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGG
T ss_pred Hhhhccc-ccc-ccccc-----cc--cc-----ccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCC
Confidence 3211000 000 00000 00 00 0000122334677777 688899999999999999999998641
Q ss_pred ---HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 262 ---IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 262 ---~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
++..+..+. .. ....++.++|||.+++++||+.|++.+|+|.
T Consensus 133 ~~~~~~~l~~~~--------~~--~~~~~~~ii~PL~~~~K~ei~~~a~~~glp~ 177 (219)
T 3bl5_A 133 RDEFVKSCNVTV--------NL--AMEKPFVIHTPLMWLNKAETWKLADELGALD 177 (219)
T ss_dssp SHHHHHHHHHHH--------HH--HHTSCCEEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHH--------Hh--ccCCCeEEEeccccCCHHHHHHHHHHcCCCc
Confidence 122221110 00 0013578999999999999999999999953
No 12
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.70 E-value=1.8e-16 Score=167.75 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=115.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc---cCCEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK---YFDSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e---g~p~~iv~l~ 184 (521)
+++|+|++|||+||+++++++.+ .|+++.++|||.+. ..+..+.+...+.++.+++ |+++++++++
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~---------~G~~v~av~v~~~~--~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~ 255 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK---------RGVSVEAVHFHSPP--FTSERAKQKVIDLAQELTKYCKRVTLHLVPFT 255 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH---------BTEEEEEEEEECTT--TSCHHHHHHHHHHHHHHGGGSSCEEEEEEECH
T ss_pred CCeEEEEeCCCChHHHHHHHHHH---------cCCcEEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 67899999999999999999975 47999999999752 1122333333344444443 5999999987
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~ 264 (521)
+.+. .+. ...+ ...+|..|++++++.+.++|+++|+++|++||+++|.+++++.
T Consensus 256 ~~~~-----~i~--------------------~~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~ 309 (413)
T 2c5s_A 256 EVQK-----TIN--------------------KEIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLD 309 (413)
T ss_dssp HHHH-----HHH--------------------HHSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHH
T ss_pred HHHH-----HHH--------------------hcCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHH
Confidence 5321 000 0000 1136778888888999999999999999999999999988888
Q ss_pred HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 265 NISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 265 nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
++.... ...++.++|||..++++||+.|++..|++.
T Consensus 310 ~l~~~~-------------~~~~~~virPL~~l~K~eI~~~a~~~Gl~~ 345 (413)
T 2c5s_A 310 SMHTIN-------------EVTNYPVIRPLITMDKLEIIKIAEEIGTYD 345 (413)
T ss_dssp HHHHHG-------------GGCCSCEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred HHhccc-------------ccCCCEEEeccCCCCHHHHHHHHHHcCCCc
Confidence 875310 012467899999999999999999999853
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.67 E-value=6.2e-16 Score=169.17 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred HHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHh
Q psy3867 94 KFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAM 173 (521)
Q Consensus 94 Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~ 173 (521)
+..+.|++. .++++|+||+|||+||+++|+++++.+ |.++.++|||+|... ..+.++ .++.++
T Consensus 244 ~~i~~ir~~---g~~~~vvvalSGGvDSsv~a~ll~~~~--------G~~v~~v~vd~g~~~---~~e~~~---~~~~~~ 306 (556)
T 3uow_A 244 LELKNIEKY---KHDHYVIAAMSGGIDSTVAAAYTHKIF--------KERFFGIFIDNGLLR---KNEAEN---VYTFLK 306 (556)
T ss_dssp HHHHHHGGG---TTTCEEEEECCSSHHHHHHHHHHHHHH--------GGGEEEEEEECSCSC---TTHHHH---HHHHHH
T ss_pred cceeeeeec---CCCceEEEEcccCCCHHHHHHHHHHHh--------CCeEEEEEEecCCCC---hHHHHH---HHHHHH
Confidence 334445554 457899999999999999999998743 678999999999742 112222 223344
Q ss_pred c---cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC----
Q psy3867 174 K---YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC---- 246 (521)
Q Consensus 174 e---g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~---- 246 (521)
+ |++++++++++.|... ..++ .....+..++...+.+++.++|+++|.
T Consensus 307 ~~l~gi~~~~vd~~~~f~~~-------l~g~------------------~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~ 361 (556)
T 3uow_A 307 STFPDMNITKIDASENFLSN-------LQGV------------------TDPEQKRKIIGKLFIEEFEKAVNNIDIDINK 361 (556)
T ss_dssp HHCTTSEEEEEECHHHHHHH-------TTTC------------------CCHHHHHHHHHHHHHHHHHHHHHTTCCCGGG
T ss_pred HhcCCCCeEEeccHHHHHHh-------hcCC------------------CChHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 4 7999999998644210 0011 011123445666678899999999996
Q ss_pred CeEEeccCcchhHHHHHHHHhcCCCCCCCC---CCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC---ceecCCC
Q psy3867 247 TKIFTAETQTDLATKIIANISLGKGAHVPL---DVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS---PVHVPSL 319 (521)
Q Consensus 247 ~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~---~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~---~~~~~~~ 319 (521)
++|++||+.+|++++...+ |.-..+.. ..++.. ...+.+++||++++|+||+.|++.+||| .+..|+|
T Consensus 362 ~~la~Gt~y~D~ies~~~~---g~~~~iks~~n~~gl~~--~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p 435 (556)
T 3uow_A 362 TFLLQGTLYPDIIESKCSK---NLSDTIKTHHNVGGLPK--NLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFP 435 (556)
T ss_dssp EEEECCCCHHHHHHHSCC------------------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCC
T ss_pred cccccCccChHHHhhcccc---cccceeccccccccccc--ccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCC
Confidence 8999999999998875321 10011111 112211 2357899999999999999999999999 3344544
No 14
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.66 E-value=3e-16 Score=160.85 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
....+.++.++..+ ++++|+||||+||+||||++.+.+. ..++.+.++|||+|... + ++.++
T Consensus 33 ~~a~~ilr~~~~~~------~~ivVa~SGGkDS~vLL~Ll~~~~~-----~~~~~i~vv~vDtg~~~---~----et~~~ 94 (325)
T 1zun_A 33 AESIHIIREVAAEF------DNPVMLYSIGKDSAVMLHLARKAFF-----PGKLPFPVMHVDTRWKF---Q----EMYRF 94 (325)
T ss_dssp HHHHHHHHHHHHHC------SSEEEECCSSHHHHHHHHHHHHHHT-----TSCCSSCEEEECCSCCC---H----HHHHH
T ss_pred HHHHHHHHHHHHhC------CCEEEEEcChHHHHHHHHHHHHhcc-----ccCCCEEEEEEECCCCC---H----HHHHH
Confidence 33455666666664 4799999999999999999987542 23456778999999732 1 36778
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++++ |++++++..+..+. .+.+. +. ..+...|..+|...|.++++++|+
T Consensus 95 v~~~~~~~gi~l~v~~~~~~~~----------~G~~~------------~~-----~~~~~cc~~~K~~pL~~~l~e~g~ 147 (325)
T 1zun_A 95 RDQMVEEMGLDLITHINPDGVA----------QGINP------------FT-----HGSAKHTDIMKTEGLKQALDKHGF 147 (325)
T ss_dssp HHHHHHTTTCCEEEECC-----------------------------------------CCHHHHHHTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEEeCchHHh----------cCCCc------------cc-----cChHHHHHHHHHHHHHHHHHHcCC
Confidence 888887 99999988763211 00000 00 012245667777889999999999
Q ss_pred CeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCC--------CC--CCCCeeeeecCCCCCHHHHHHHHHHCCCCcee
Q psy3867 247 TKIFTAETQTDLATKIIANISLGKGAHVPLDVGFS--------DD--RTGDIITLRPLRDFSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 247 ~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~--------d~--~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~ 315 (521)
+++++||+.||...+..+++...||..-.|+.... .. ..++..+++||.+|+++||+.|++.++||+..
T Consensus 148 ~~i~tG~R~Des~~Ra~~~~~~~r~~~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~ 226 (325)
T 1zun_A 148 DAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVP 226 (325)
T ss_dssp SEEECCCCTTSSGGGGGCCSEEEECTTCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCS
T ss_pred CEEEEecccchhhhhhcccceeccccccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcch
Confidence 99999999999776544444332232222222100 00 01246679999999999999999999999743
No 15
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.65 E-value=1.3e-15 Score=165.67 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=110.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH-Hhc--cCCEEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT-AMK--YFDSYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~-~~e--g~p~~iv~l~e 185 (521)
++|+|++|||+||+++|+++++.+ |.++.++|+|+|.... . +.+.+.+ +++ |++++++++++
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~--------G~~v~av~v~~g~~~~---~----e~~~~~~~la~~lgi~~~~v~~~~ 292 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI--------GKNLTCVFVDNGLLRL---N----EAEQVLDMFGDHFGLNIVHVPAED 292 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--------GGGEEEEEEECSCSCT---T----HHHHHHHHHTTTTCCCEEEEECHH
T ss_pred cceEEEecCCCCHHHHHHHHHHHh--------CCCEEEEEEeCCCCCc---h----HHHHHHHHHHHHhCCcEEEEeccH
Confidence 689999999999999999998743 6789999999997421 1 2334544 676 99999999885
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc-CCCeEEeccCcchhHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL-NCTKIFTAETQTDLATKIIA 264 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l-g~~~V~tGh~~dDlA~~~L~ 264 (521)
.|.. .. .+. .+...++.++...++++|.++|+++ |+++|++||+.+|+++++ .
T Consensus 293 ~f~~----~l---~~~------------------~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~-~ 346 (525)
T 1gpm_A 293 RFLS----AL---AGE------------------NDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA-A 346 (525)
T ss_dssp HHHH----HH---TTC------------------CCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT-C
T ss_pred HHHH----hh---cCC------------------CChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhc-C
Confidence 3310 00 000 0111245677788889999999999 999999999999999863 1
Q ss_pred HHhcCCCCCCC---CCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 265 NISLGKGAHVP---LDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 265 nl~~GrG~~l~---~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
...+|.+ .+. ...++. ...+..++|||++++|+||+.|++.+|+|.
T Consensus 347 ~~~~~s~-~iks~~~l~gl~--~~~~~~~i~PL~~l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 347 SATGKAH-VIKSHHNVGGLP--KEMKMGLVEPLKELFKDEVRKIGLELGLPY 395 (525)
T ss_dssp -------------------------CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred ccccccc-cccccccccccc--cccCCcEEehhhcCCHHHHHHHHHHcCCCH
Confidence 0111211 111 111221 123468999999999999999999999995
No 16
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.62 E-value=4.7e-15 Score=157.25 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=115.4
Q ss_pred CCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEE
Q psy3867 104 MMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYF 180 (521)
Q Consensus 104 li~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~i 180 (521)
.+++++||+||||||+||+++|++|++ .++++.++|+|+|.... ++++.++++|+ |+ ++++
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e---------~G~eViavtvd~Gq~~~-------~ele~a~~~A~~lGi~~~~v 69 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQ---------KGAVPYAYTANLGQPDE-------EDYDAIPRRAMEYGAENARL 69 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHH---------TTCEEEEEEEECCCTTC-------SCTTHHHHHHHHHTCSEEEE
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHH---------cCCEEEEEEEEcCCCCH-------HHHHHHHHHHHHhCCCeEEE
Confidence 367789999999999999999999976 37899999999996311 14567888887 99 8999
Q ss_pred EEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccC--cchh
Q psy3867 181 TCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAET--QTDL 258 (521)
Q Consensus 181 v~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~--~dDl 258 (521)
+++.+.|.....+.+.... . +....+ ...-....+.|.++...+.++|++.|+++|++||+ .+|.
T Consensus 70 vD~~eef~~~v~p~i~~na-~----y~~eg~--------rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq 136 (455)
T 1k92_A 70 IDCRKQLVAEGIAAIQCGA-F----HNTTGG--------LTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI 136 (455)
T ss_dssp EECHHHHHHHHHHHHHHTC-C----CCEETT--------EECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHH
T ss_pred EeChHHHHHHhHHHHHcCC-c----ccccCc--------eecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCH
Confidence 9997644311001111000 0 000000 00001234567888899999999999999999997 4777
Q ss_pred HHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC-------CCHHHHHHHHHHCCCCcee
Q psy3867 259 ATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRD-------FSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 259 A~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd-------~~kkEI~~Ya~~~~L~~~~ 315 (521)
+.--+. ..+ . ..++.+++|+++ ++++||+.|++.+|||+..
T Consensus 137 ~rf~~~--~~a----------l----~p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 137 ERFYRY--GLL----------T----NAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp HHHHHH--HHH----------H----CTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCC
T ss_pred HHHHHH--HHh----------c----CCCCEEECeeccccccccCCCHHHHHHHHHHcCCCccc
Confidence 642111 110 0 124789999998 8999999999999999864
No 17
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.62 E-value=2.9e-15 Score=146.02 Aligned_cols=165 Identities=15% Similarity=0.061 Sum_probs=105.8
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCC-EEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFD-SYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p-~~iv~l~e 185 (521)
++++|+||||+||+++|+++.+ .++++.++|||+|... . .+++.++++++ |++ +++++++.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~---------~~~~v~av~~~~g~~~---~----~e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQ---------DYDDVHCITFDYGQRH---R----AEIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---------HCSEEEEEEEESSSSC---H----HHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCEEEEecCcHHHHHHHHHHHH---------cCCCEEEEEEECCCCC---H----HHHHHHHHHHHHhCCCceEEEeChh
Confidence 5899999999999999999876 2468999999999632 1 24677888887 999 99999873
Q ss_pred c--cCCchhhhhhcc-cCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHH-HHHHHhcCCCeEEeccCcchhHH-
Q psy3867 186 A--LEPDNMKLYTDV-AELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLL-LQAAKKLNCTKIFTAETQTDLAT- 260 (521)
Q Consensus 186 v--f~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL-~~~A~~lg~~~V~tGh~~dDlA~- 260 (521)
+ |... .+... .+++...... . +.-+++..++.+++..+ ..+|+++|+++|++||+++|.++
T Consensus 67 l~~~~~~---~l~~~~~~v~~~~~~~-~----------~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~ 132 (232)
T 2pg3_A 67 LNELATS---SLTRDSIPVPDYDANA-Q----------GIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGY 132 (232)
T ss_dssp HHHTSHH---HHHHTTCCCCC--------------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCC
T ss_pred HHHHhhh---hccccccccccccccc-C----------CCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCC
Confidence 2 2110 00000 0000000000 0 00012234566665555 78999999999999999999763
Q ss_pred -----HHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCC-Cc
Q psy3867 261 -----KIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDL-SP 313 (521)
Q Consensus 261 -----~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L-~~ 313 (521)
.++..+..- ..+.. ..++.++|||.+++|.||+.|++..|+ |+
T Consensus 133 ~~~r~~~~~~~~~~--------~~~~~--~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 133 PDCRDEFVKALNQA--------IVLGI--ARDIRFETPLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp GGGSHHHHHHHHHH--------HHHHH--TSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHH--------HHHhC--CCCeEEEEecCCCCHHHHHHHHHHcCCCcc
Confidence 111111100 00000 124789999999999999999999999 64
No 18
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.62 E-value=1e-15 Score=151.47 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=113.6
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHH
Q psy3867 93 HKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATA 172 (521)
Q Consensus 93 ~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~ 172 (521)
..++.++..+ +++|+|++|||+||+|||+++.+. +.++.++|+|+|... + ++.++++++
T Consensus 35 ~~l~~a~~~~-----~~~v~va~SGG~DS~vLL~ll~~~---------~~~v~vv~idtg~~~---~----et~~~~~~~ 93 (252)
T 2o8v_A 35 GRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI---------RPDIPVILTDTGYLF---P----ETYRFIDEL 93 (252)
T ss_dssp HHHHHHHTTS-----CSCEEEECCCSTTHHHHHHHHHHH---------STTCEEEECCCSCBC---H----HHHHHHHHH
T ss_pred HHHHHHHHHc-----CCCEEEEeCCCHHHHHHHHHHHHh---------CCCCeEEEecCCCCC---H----HHHHHHHHH
Confidence 3455555553 468999999999999999999862 346789999999732 1 356788888
Q ss_pred hc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy3867 173 MK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIF 250 (521)
Q Consensus 173 ~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~ 250 (521)
++ |++++++..+.-+ ..+....+ . ++.. +...++..|...|...|.++++++|+++++
T Consensus 94 ~~~~gi~~~v~~~~~~~-----~~~~~~~g-~------------~~~~--~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~ 153 (252)
T 2o8v_A 94 TDKLKLNLKVYRATESA-----AWQEARYG-K------------LWEQ--GVEGIEKYNDINKVEPMNRALKELNAQTWF 153 (252)
T ss_dssp HHHTTCEEEECCCSSCH-----HHHHHHTC-C------------GGGS--HHHHHHHHHHHHTHHHHHHHHHHTTCSEEE
T ss_pred HHHhCCceEEEcCCCCH-----HHHHHHcC-C------------cccc--CCchHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 87 9999988765210 01110000 0 0000 001234566777888899999999999999
Q ss_pred eccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 251 TAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 251 tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+|++.+|.+. |. .++ .+ +. ..++.++|||.+|+++||+.|++.++||+.
T Consensus 154 tG~r~dds~~---------R~-~l~---~~-~~-~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~ 202 (252)
T 2o8v_A 154 AGLRREQSGS---------RA-NLP---VL-AI-QRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp ECCCSTTTTC---------CT-TSC---SE-EE-SSSSEEECGGGSCCHHHHHHHHHHTTCCCC
T ss_pred Eecccccccc---------cc-cCc---ee-ec-CCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 9999998432 21 111 11 11 234778999999999999999999999864
No 19
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.61 E-value=3.7e-15 Score=147.73 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+..++.+.|+++ ..++|+|++|||+||+++++++.+.+. ..++.++|++++.. . +.+.
T Consensus 7 ~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~~~~~g-------~~~v~av~~~~~~~-----~----~~~~ 66 (257)
T 2e18_A 7 DKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLATKALG-------KEKVLGLIMPYFEN-----K----DVED 66 (257)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHHHHHHC-------GGGEEEEECCSSCS-----T----HHHH
T ss_pred HHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHHHHhcC-------CCcEEEEEeCCCCc-----h----HHHH
Confidence 34566777777776 457899999999999999999987431 15789999998841 1 3456
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++++ |++++++++++.++ .+... +. ........+.++.++|+.++..+|+++|+
T Consensus 67 a~~~a~~lgi~~~~i~i~~~~~-----~~~~~-------------l~----~~~~~~~~~n~~ar~r~~~l~~~A~~~g~ 124 (257)
T 2e18_A 67 AKLVAEKLGIGYKVINIKPIVD-----SFVEN-------------LE----LNLDRKGLGNIMSRTRMIMLYAHANSLGR 124 (257)
T ss_dssp HHHHHHHHTCEEEECCCHHHHH-----HHHHH-------------HC----SCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCEEEEEChHHHH-----HHHHH-------------hc----cccccchhHHHHHHHHHHHHHHHHHHcCC
Confidence 788887 99999999875331 11100 00 00011135667778999999999999999
Q ss_pred CeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 247 TKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 247 ~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.+|.+||+.++. .|-+ . .+ .....+++||.++++.||+.|++..|+|.
T Consensus 125 ~vl~tg~~~e~~---------~Gy~--t----~~----g~~~~~i~Pl~~l~K~ev~~la~~~gip~ 172 (257)
T 2e18_A 125 IVLGTSNRSEFL---------TGYF--T----KW----GDGASDYAPIINLYKTEVWEIAKRIGVPE 172 (257)
T ss_dssp EEECCCCHHHHH---------HTCS--C----TT----STTCSSBCTTTTSCHHHHHHHHHHHTCCH
T ss_pred EEEEcCchhHHh---------cCCe--e----cc----CCCccCEeecCCCcHHHHHHHHHHcCCCH
Confidence 999999976553 2321 1 11 12456899999999999999999999995
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.61 E-value=4e-15 Score=147.03 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHH
Q psy3867 91 LNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIA 170 (521)
Q Consensus 91 i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~ 170 (521)
+..-++..+++++ .++|+|++|||+||+++++++.+.+ |+++.++|++++... . .+.+.++
T Consensus 13 l~~~l~d~v~~~g----~~~vvv~lSGGiDSsv~a~l~~~~~--------g~~v~av~~~~~~~~---~----~~~~~a~ 73 (249)
T 3p52_A 13 MCDFIQEKVKNSQ----SQGVVLGLSGGIDSALVATLCKRAL--------KENVFALLMPTQISN---K----ANLEDAL 73 (249)
T ss_dssp HHHHHHHHHHTSS----CSEEEEECCSSHHHHHHHHHHHHHH--------TTSEEEEECCSCCSS---C----HHHHHHH
T ss_pred HHHHHHHHHHHhC----CCCEEEEcCCCHHHHHHHHHHHHHc--------CCcEEEEEecCCCCC---H----HHHHHHH
Confidence 3344444555543 4689999999999999999998743 578999999987521 1 2345677
Q ss_pred HHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCe
Q psy3867 171 TAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTK 248 (521)
Q Consensus 171 ~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~ 248 (521)
++++ |++++++++++++. .+... ++ -.+..++|.+|.++|+.+|..+|+++|+.+
T Consensus 74 ~~a~~lgi~~~~v~i~~~~~-----~~~~~--~~----------------~~~~~~~~n~~~r~R~~~l~~~A~~~g~~v 130 (249)
T 3p52_A 74 RLCADLNLEYKIIEIQSILD-----AFIKQ--SE----------------NTTLVSLGNFAARIRMSLLYDYSALKNSLV 130 (249)
T ss_dssp HHHHHHTCEEEECCCHHHHH-----HHHTT--CS----------------CCCHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHhCCCEEEEECcHHHH-----HHHHh--cc----------------ccCCccHhHHHHHHHHHHHHHHHHHCCCeE
Confidence 8887 99999999885431 11100 00 011225789999999999999999999988
Q ss_pred EEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 249 IFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 249 V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
|.|||. ++.+ .|- . +.+ .....++|||.+++|.||+.+++..|+|
T Consensus 131 l~tgn~-se~~--------~g~--~----t~~----gd~~~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 131 IGTSNK-SELL--------LGY--G----TIY----GDLACAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp BCCCCH-HHHH--------HTC--S----CTT----TTTCCSEETTTTSCHHHHHHHHHHTTCC
T ss_pred EeCCCH-HHHH--------ccc--h----hhh----ccccCccccccCCcHHHHHHHHHHcCCc
Confidence 877764 3332 221 1 111 1123579999999999999999999999
No 21
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.61 E-value=6e-15 Score=155.08 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=109.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~e 185 (521)
+||+||||||+||+++|+++++. +++++.++|||+|. +. +++.++++++ |+ +++++++.+
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~--------~g~~V~av~vd~g~--~~-------e~e~a~~~A~~lGi~~~~vvd~~~ 63 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET--------YRAEVIAFTADIGQ--GE-------EVEEAREKALRTGASKAIALDLKE 63 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH--------HTCEEEEEEEESSC--SS-------CHHHHHHHHHHHTCSEEEEEECHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHh--------hCCcEEEEEEeCCC--HH-------HHHHHHHHHHHhCCCeEEEEeCcH
Confidence 48999999999999999999762 36899999999996 11 3566888887 99 799999885
Q ss_pred ccCCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcc--hhHHHH
Q psy3867 186 ALEPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQT--DLATKI 262 (521)
Q Consensus 186 vf~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~d--DlA~~~ 262 (521)
.|.... .+.+... ... ...+ ...+ .+++.++...|.++|+++|+++|++||+++ |+++..
T Consensus 64 ef~~~~~~~~i~~~-~~~------e~~y-------~~g~---~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~ 126 (400)
T 1kor_A 64 EFVRDFVFPMMRAG-AVY------EGYY-------LLGT---SIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFE 126 (400)
T ss_dssp HHHHHTHHHHHHTT-CCB------TTTB-------CCTT---TTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHH
T ss_pred HHHHHhhHHHHHcC-Ccc------cccc-------ccCC---ccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHH
Confidence 431100 0011100 000 0000 0000 135667778999999999999999999997 887742
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCC---CHHHHHHHHHHCCCCcee
Q psy3867 263 IANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDF---SSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 263 L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~---~kkEI~~Ya~~~~L~~~~ 315 (521)
+. + . .+ .+++.++|||+++ +++||+.|++.+|||+..
T Consensus 127 ~g-~-~----------~l----~p~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~ 166 (400)
T 1kor_A 127 LT-A-Y----------AL----KPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPV 166 (400)
T ss_dssp HH-H-H----------HH----CTTCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-
T ss_pred HH-H-H----------hc----CCCCEEEEeecccccCCHHHHHHHHHHcCCCccc
Confidence 21 1 0 11 1246889999999 999999999999999874
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.56 E-value=1.4e-14 Score=144.46 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=107.3
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
.++|+|++|||+||+++++++.+.+ ++++.++|++++.. +. ++.+.++++++ |++++++++++
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~--------~~~v~av~~~~~~~---~~----~e~~~a~~~a~~lgi~~~~i~i~~ 89 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF--------KENAHALLMPSSVS---MP----ENKTDALNLCEKFSIPYTEYSIAP 89 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH--------GGGEEEEECCCSSS---CH----HHHHHHHHHHHHHTCCEEECCCHH
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC--------CCCEEEEEeCCCCC---CH----HHHHHHHHHHHHcCCCEEEEeChH
Confidence 5689999999999999999997733 36788999998742 22 24567888887 99999999875
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
.++ .+... + .. . .....+.++.++|+.++..+|+++|+.+|.+||. ++.+
T Consensus 90 ~~~-----~~~~~--~-----~~----------~-~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~----~E~~--- 139 (268)
T 1xng_A 90 YDA-----IFSSH--F-----KD----------A-SLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SERM--- 139 (268)
T ss_dssp HHH-----HHHHH--C-----TT----------C-CHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHHH---
T ss_pred HHH-----HHHHH--h-----hh----------c-CCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH----HHHh---
Confidence 331 11100 0 00 0 1124577788999999999999999999999973 2222
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
.|-+ +.+ .....+++||.++++.||+.|++..|+|.
T Consensus 140 --~Gy~------t~~----gd~~~~i~PL~~l~K~ev~~la~~~gip~ 175 (268)
T 1xng_A 140 --LGYG------TLF----GDLACAINPIGELFKTEVYELARRLNIPK 175 (268)
T ss_dssp --HTCS------CTT----TTTCCSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred --cCcc------ccc----CCCCeeEEecCCCCHHHHHHHHHHcCCcH
Confidence 2311 111 12356899999999999999999999994
No 23
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.4e-14 Score=142.40 Aligned_cols=171 Identities=10% Similarity=0.066 Sum_probs=114.9
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT 171 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~ 171 (521)
...++.++..+ .+|+|++|||+||+||||++.+... + +..+.++|+|+|... + ++.+++++
T Consensus 31 ~~~l~~a~~~~------~~v~va~SGGkDS~vLL~ll~~~~~-----~-~~~i~vv~iDtg~~~---~----et~~~v~~ 91 (261)
T 2oq2_A 31 QEIIAWSIVTF------PHLFQTTAFGLTGLVTIDMLSKLSE-----K-YYMPELLFIDTLHHF---P----QTLTLKNE 91 (261)
T ss_dssp HHHHHHHHHHC------SSEEEECCCCHHHHHHHHHHHHHTT-----T-SCCCEEEEECCSCBC---H----HHHHHHHH
T ss_pred HHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHHhCc-----c-CCCeeEEEecCCCCC---H----HHHHHHHH
Confidence 34566666665 2799999999999999999987321 1 356789999999732 1 35778888
Q ss_pred Hhc--cC----CEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcC
Q psy3867 172 AMK--YF----DSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLN 245 (521)
Q Consensus 172 ~~e--g~----p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg 245 (521)
+++ |+ +++++..+.... ...+....+.+ ++. .++...|...|...|.++++++|
T Consensus 92 ~~~~~gl~~~~~l~v~~~~~~~~---~~~~~~~~G~~------------~~~-----~~~~~cc~~~K~~pl~~~l~~~g 151 (261)
T 2oq2_A 92 IEKKYYQPKNQTIHVYKPDGCES---EADFASKYGDF------------LWE-----KDDDKYDYLAKVEPAHRAYKELH 151 (261)
T ss_dssp HHHHHTGGGTCCCEEECSTTCSS---HHHHHHHHCTT------------HHH-----HCHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCeEEEecCCccC---HHHHHHHhCCC------------ccc-----cChHHHHHHHhHHHHHHHHHHcC
Confidence 887 98 999887652100 01111000000 000 12345566667788889999999
Q ss_pred CCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 246 CTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 246 ~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++++++||+.+|... |. .++ .+......++..++||.+|+++||+.|++.++||+.
T Consensus 152 ~~~~~tG~R~dds~~---------R~-~~~---~~~~~~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 152 ISAVFTGRRKSQGSA---------RS-QLS---IIEIDELNGILKINPLINWTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp CSEEECCCCGGGCGG---------GG-GCC---SEEEETTTTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred CCEEEEeccccchHH---------Hc-cCC---ceeecCCCCeEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 999999999999533 11 111 111111245778999999999999999999999964
No 24
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.55 E-value=3.8e-14 Score=149.43 Aligned_cols=158 Identities=13% Similarity=0.165 Sum_probs=109.4
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCC-EEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFD-SYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p-~~iv~l~ 184 (521)
+++|+||||||+||+++|+++++ .++++.++|+|+|.. . +++.++++++ |++ ++++++.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e---------~G~eV~av~vd~g~~--~-------e~e~a~~~A~~lGi~~~~vvd~~ 66 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKE---------QGYDVIAYLANIGQK--E-------DFEEARKKALKLGAKKVFIEDVS 66 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHH---------TTEEEEEEEEESSCC--C-------CHHHHHHHHHHHTCSEEEEEECH
T ss_pred CCeEEEEEcChHHHHHHHHHHHH---------cCCEEEEEEEECCcH--H-------HHHHHHHHHHHhCCCEEEEEeCh
Confidence 56899999999999999999975 278999999999962 1 3566888887 998 8999987
Q ss_pred cccCCchh-hhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCc--chhHHH
Q psy3867 185 QALEPDNM-KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQ--TDLATK 261 (521)
Q Consensus 185 evf~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~--dDlA~~ 261 (521)
+.|..... +.+... .. +.. . .... ..+.+.++++.+.++|+++|+++|++||++ +|+++.
T Consensus 67 ~ef~~~~~~~~i~~~-a~----~e~--~------y~~g----~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf 129 (413)
T 2nz2_A 67 REFVEEFIWPAIQSS-AL----YED--R------YLLG----TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRF 129 (413)
T ss_dssp HHHHHHTHHHHHHTT-CC----BTT--T------BCCT----TTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhC-cc----ccc--c------cccc----cccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHH
Confidence 54321000 000000 00 000 0 0000 012456777889999999999999999999 787763
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCC------CC-CHHHHHHHHHHCCCCceec
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLR------DF-SSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLr------d~-~kkEI~~Ya~~~~L~~~~~ 316 (521)
.+.... + ..++.+++||+ ++ +++||..|++.+|||+..+
T Consensus 130 ~lg~~~------------l----~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~ 175 (413)
T 2nz2_A 130 ELSCYS------------L----APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVT 175 (413)
T ss_dssp HHHHHH------------H----CTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSS
T ss_pred HHHHHh------------c----CCCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecC
Confidence 321111 1 12478999999 88 9999999999999998754
No 25
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=160.92 Aligned_cols=186 Identities=18% Similarity=0.159 Sum_probs=115.8
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccc-eeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~-f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
+++|+|++|||+||+++|+++++. +| +++.++|||+|..... +.+.++++++ |+++++++++
T Consensus 240 ~~~vvv~lSGGvDSsVla~Ll~~a--------lG~~~V~aV~vd~g~~~~~-------e~e~a~~~a~~lGI~~~vvdi~ 304 (697)
T 2vxo_A 240 TSKVLVLLSGGVDSTVCTALLNRA--------LNQEQVIAVHIDNGFMRKR-------ESQSVEEALKKLGIQVKVINAA 304 (697)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH--------SCGGGEEEEEEECSCCCSS-------TTHHHHHHHHHTTCCEEEEECH
T ss_pred ccceEEEccCchHHHHHHHHHHHh--------cCCceEEEEEeccccCCcc-------hHHHHHHHHHHhCCcEEEecch
Confidence 369999999999999999999873 35 7899999999974321 2355777777 9999999998
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCC----eEEeccCcchhHH
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCT----KIFTAETQTDLAT 260 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~----~V~tGh~~dDlA~ 260 (521)
+.|............+.. +... ...-+..+.....+......++.+++..+|+++|++ +|++||+.+|+++
T Consensus 305 ~~f~~~~~~l~~~~~~~~---Y~~g--~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D~iE 379 (697)
T 2vxo_A 305 HSFYNGTTTLPISDEDRT---PRKR--ISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIE 379 (697)
T ss_dssp HHHHTCCCBCC-------------C--BCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBC
T ss_pred HHHHhhhhhhcccccccc---hhcc--cCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChhhhh
Confidence 654221000000000000 0000 000001111111111222334566667888999998 9999999999999
Q ss_pred HHHHHHhcCCCCCCCC---CCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 261 KIIANISLGKGAHVPL---DVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 261 ~~L~nl~~GrG~~l~~---~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
+++..+.+|.+. +.. ..++.........+++||++++|+||+.|++..|+|+.
T Consensus 380 s~~~~l~~g~~~-iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGlP~~ 435 (697)
T 2vxo_A 380 SASLVASGKAEL-IKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEE 435 (697)
T ss_dssp CHHHHHHSCCCG-GGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHH
T ss_pred hhhhhhhcCccc-cccccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCCCcc
Confidence 887666555321 111 12221110123579999999999999999999999984
No 26
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.54 E-value=3.7e-14 Score=140.08 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+..-++..+.+++ .++|+|++|||+||+++++++.+.+ .+..++|++.+.. +. .+.+.
T Consensus 14 ~~l~~~l~~~v~~~~----~~~vvv~lSGGiDSsv~a~l~~~~~---------~~~~av~~~~~~~---~~----~~~~~ 73 (249)
T 3fiu_A 14 QKLVNWLSDSCMNYP----AEGFVIGLSGGIDSAVAASLAVKTG---------LPTTALILPSDNN---QH----QDMQD 73 (249)
T ss_dssp HHHHHHHHHHHHTTT----CSEEEEECCSSHHHHHHHHHHHHTT---------SCEEEEECCCTTS---CH----HHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCEEEEecCcHHHHHHHHHHHHhC---------CCCEEEEecCCCC---CH----HHHHH
Confidence 344444555555433 4689999999999999999997622 2344899997641 22 24567
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhc--cCCCccHHHHHHHHHHHHHHHHHHhc
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQT--VTTLSSRQYLLQTLRQNLLLQAAKKL 244 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s--~~s~Tsre~l~~~lR~~lL~~~A~~l 244 (521)
++++++ |++++++++++.|+. +.. .+...+.. .......+.+..++|+.+|..+|+++
T Consensus 74 a~~~a~~lgi~~~~v~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~ 135 (249)
T 3fiu_A 74 ALELIEMLNIEHYTISIQPAYEA-----FLA-------------STQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY 135 (249)
T ss_dssp HHHHHHHHTCEEEECCCHHHHHH-----HHH-------------HTGGGC------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEChHHHHH-----HHH-------------HHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHc
Confidence 888887 999999999865421 100 00000000 00001223333899999999999999
Q ss_pred CCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCC
Q psy3867 245 NCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312 (521)
Q Consensus 245 g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~ 312 (521)
|+.+|.|||. ++. + .| .. +.+ .....+++||.+++|.||+.+++..|+|
T Consensus 136 g~~vl~TGn~-sE~---~-----~G--~~----t~~----gd~~~~i~PL~~l~K~eVr~lA~~lglp 184 (249)
T 3fiu_A 136 NRIVIGTDNA-CEW---Y-----MG--YF----TKF----GDGAADILPLVNLKKSQVFELGKYLDVP 184 (249)
T ss_dssp TEEEBCCCCH-HHH---H-----HT--CS----CTT----TTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCH-HHH---h-----cC--ch----hcc----CCCCcceeecccCcHHHHHHHHHHcCCc
Confidence 9999999953 322 1 22 11 111 1124589999999999999999999999
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.46 E-value=4.2e-13 Score=140.89 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=107.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cC-CEEEEEcc
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YF-DSYFTCLE 184 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~-p~~iv~l~ 184 (521)
.+||+||||||+||+++|++|++ .|+++.++++|.|.. ++++.++++|+ |+ +++++++.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke---------~G~eViavt~d~Gq~---------~Ele~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE---------KGFDVIAYVANVGQK---------DDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH---------TTCEEEEEEEESSCC---------CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH---------CCCeEEEEEEEcCCH---------HHHHHHHHHHHHcCCceEEEEecH
Confidence 46899999999999999999976 389999999999862 13567888887 99 99999998
Q ss_pred cccCCch-hhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCc--chhHHH
Q psy3867 185 QALEPDN-MKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQ--TDLATK 261 (521)
Q Consensus 185 evf~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~--dDlA~~ 261 (521)
+.|.... .+.+... .+ + ...+ . ....+++.+....+.++|+++|+++|++||++ +|....
T Consensus 76 eef~~~v~~p~i~~n-a~----y--eg~Y-------~---~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf 138 (421)
T 1vl2_A 76 REFVTDYIFTALLGN-AM----Y--EGRY-------L---LGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRF 138 (421)
T ss_dssp HHHHHHTHHHHHTTT-CC----B--TTTB-------C---CHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH
T ss_pred HHHHHhhhhHHHhcC-Cc----c--cCce-------e---CCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHH
Confidence 6553110 0111000 00 0 0000 0 11234566667888999999999999999997 354321
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCC-------CCHHHHHHHHHHCCCCcee
Q psy3867 262 IIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRD-------FSSKEVIYYNIFNDLSPVH 315 (521)
Q Consensus 262 ~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd-------~~kkEI~~Ya~~~~L~~~~ 315 (521)
-+.-.+. ..+++++.||++ ++++||+.|++.+|||...
T Consensus 139 ~~~~~al----------------~p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 139 ELTYAAL----------------NPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp HHHHHHH----------------CTTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred HHHHHhc----------------CCCCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 1110010 124689999999 7999999999999999764
No 28
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.7e-13 Score=137.87 Aligned_cols=185 Identities=11% Similarity=0.127 Sum_probs=113.0
Q ss_pred cccccCCCCceEEec-CCcccchHHHHHHHHHHHHHHHh-----hcCCCCC-CCeEEEecCCCccHHHHHHHHHHHhhhh
Q psy3867 63 LCPRCNTNNGEVVLR-LKDIYCKACLLQYLNHKFRAALG-----KSKMMRP-QDKVLVAFSGSHSSMALLHLLQEGMQLS 135 (521)
Q Consensus 63 ~C~kCk~~~a~i~~r-~~~~~Cr~CF~~~i~~Kfr~~L~-----k~kli~~-~~kVLVa~SGG~DS~vLL~lL~~~l~~~ 135 (521)
.|.+|....++++-. .+..+ ...+..+++.+++ ....+.+ +++|+|+||||+||+||||++.+.+...
T Consensus 6 ~c~~c~~~~~~~~~~~~~~~l-----~~~~~e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~ 80 (306)
T 2wsi_A 6 AAEMCYEITNSYLHIDQKSQI-----IASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEY 80 (306)
T ss_dssp HHHHHHHHHHHHHTCCCSCHH-----HHHHHHHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchHHH-----HHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhh
Confidence 399997434444322 23233 4555555555444 2222332 4789999999999999999998765321
Q ss_pred c------------c-cccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccC
Q psy3867 136 S------------H-KRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAE 200 (521)
Q Consensus 136 ~------------~-kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~ 200 (521)
. + ...+.++.++|||.|.. + .++.++++++++ |++++++..+..+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--f-----pet~~fv~~~~~~ygl~l~v~~~~~~~--------~---- 141 (306)
T 2wsi_A 81 FFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--F-----PTLENFVLETSERYCLSLYESQRQSGA--------S---- 141 (306)
T ss_dssp HHHHHHHC--------CCCCCEEEEECCCTTC--C-----HHHHHHHHHHHHHTTEEEEECCC-----------------
T ss_pred cccccccccccccccccCCCCeeEEEEeCCCC--C-----HHHHHHHHHHHHHcCCCEEEEeCCccc--------c----
Confidence 0 0 01135688999999862 2 246778888887 8888776554211 0
Q ss_pred CchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh-cCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCc
Q psy3867 201 LPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK-LNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVG 279 (521)
Q Consensus 201 ~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~-lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~ 279 (521)
. .+ .+ .+.++++. -+..+|++|++.+|.. +|+ +... .
T Consensus 142 ~---------~l------------~~---------~~~~~~k~~p~~~aii~G~Rrdds~---------~r~--l~~~-~ 179 (306)
T 2wsi_A 142 V---------NM------------AD---------AFRDFIKIYPETEAIVIGIRHTDPF---------GEA--LKPI-Q 179 (306)
T ss_dssp C---------CH------------HH---------HHHHHHHHCTTCCEEECCCCCCSSS---------CCC--CCSE-E
T ss_pred c---------cH------------HH---------HHHHHHhhCCCCcEEEEEEeccccc---------ccc--cCce-e
Confidence 0 00 00 11123344 4788999999999943 332 2111 1
Q ss_pred CCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 280 FSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 280 ~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
..+....++..++||.+|+++||+.|++.++||+
T Consensus 180 ~~d~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy 213 (306)
T 2wsi_A 180 RTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPI 213 (306)
T ss_dssp ECCTTSCSCEEECTTTTCCHHHHHHHHHHHCCCB
T ss_pred ccCCCCCCcEEEeChHHCCHHHHHHHHHHcCCCC
Confidence 1122123467899999999999999999999997
No 29
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.38 E-value=3.5e-12 Score=127.66 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHH
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIAT 171 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~ 171 (521)
...++.++..+ +++|+|++| |+||+|||+++.+ + ++++.++|||+|... + ++.+++++
T Consensus 43 ~~~l~~a~~~~-----g~~i~Va~S-GkDS~vLL~Ll~~-~--------~~~i~vv~iDtg~~~---~----et~~~v~~ 100 (275)
T 2goy_A 43 QDILKAAFEHF-----GDELWISFS-GAEDVVLVDMAWK-L--------NRNVKVFSLDTGRLH---P----ETYRFIDQ 100 (275)
T ss_dssp HHHHHHHHHHH-----STTEEEECC-SSTTHHHHHHHHH-H--------CTTCCEEEECCSCCC---H----HHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCEEEEee-cHHHHHHHHHHHH-h--------CCCceEEEEeCCCCC---H----HHHHHHHH
Confidence 44556666655 468999999 9999999999976 2 456779999999732 1 35678888
Q ss_pred Hhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeE
Q psy3867 172 AMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKI 249 (521)
Q Consensus 172 ~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V 249 (521)
+++ |++++++..+.. . ...+....+.+ .+... .+...|...|...|.++.+ +++.+
T Consensus 101 ~~~~~gi~l~v~~~~~~-~---~~~~~~~~g~~-----------~~~~~-----~~~~cc~~~K~~pl~r~l~--~~~~~ 158 (275)
T 2goy_A 101 VREHYGIAIDVLSPDPR-L---LEPLVKEKGLF-----------SFYRD-----GHGECCGIRKIEPLKRKLA--GVRAW 158 (275)
T ss_dssp HHHHHTCCCEEECCCHH-H---HHHHHHHHCSC-----------HHHHH-----CTHHHHHHHTHHHHHHHHH--TCSEE
T ss_pred HHHHHCCeEEEEeCCcc-C---HHHHHHHhCCC-----------Ccccc-----CHHHHHHHHHHHHHHHHHH--hcCch
Confidence 887 999998765520 0 00111000100 00000 1234556666666777666 56799
Q ss_pred EeccCcchhHHHHHHHHhcCCCCCCCC---CCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCce
Q psy3867 250 FTAETQTDLATKIIANISLGKGAHVPL---DVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPV 314 (521)
Q Consensus 250 ~tGh~~dDlA~~~L~nl~~GrG~~l~~---~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~ 314 (521)
++|++.+|.. ..|. .++. +..+. ....++.+++||.+++++||..|++.++||+.
T Consensus 159 itG~r~dds~--------~~R~-~~~~~~~d~~~~-~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 159 ATGQRRDQSP--------GTRS-QVAVLEIDGAFS-TPEKPLYKFNPLSSMTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp ECCCCGGGTT--------SCSC-CCCSEEECTTTC-CSSSCCEEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred hcCchhhhhh--------hhhh-hCcccccccccc-cCCCCeEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 9999999852 1221 1111 10010 01245778999999999999999999999964
No 30
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.24 E-value=7.2e-11 Score=117.90 Aligned_cols=176 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccc-eeEEEEEEeCCCCCccChHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGSISQVSISERKAN 165 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~-f~v~~v~ID~g~~~~~s~~e~~~~ 165 (521)
+...+...++..+++.+ .++|+|++|||+||++++.++++....-. ...+ +++.+++++++. .. .
T Consensus 21 ~i~~~~~~L~d~v~~~g----~~~vvvgLSGGvDSsv~a~La~~a~~~lg-~~~~~~~v~av~~~~~~--~~-------d 86 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTG----AKGFVLGISGGQDSTLAGRLAQLAVESIR-EEGGDAQFIAVRLPHGT--QQ-------D 86 (271)
T ss_dssp HHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHH-HTTCCCEEEEEECCSSS--CT-------T
T ss_pred HHHHHHHHHHHHHHHcC----CCCEEEECCCCHHHHHHHHHHHHHHHHhc-ccCCCceEEEEEeCCCC--CC-------C
Confidence 34445566666666643 24899999999999999999876442100 0000 578889888653 11 2
Q ss_pred HHHHHHHhc--cC-CEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867 166 NAQIATAMK--YF-DSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK 242 (521)
Q Consensus 166 l~~v~~~~e--g~-p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~ 242 (521)
.+.++++++ |+ +++++++++.++.-. ..+. ..+..-....+.+.+..++|..++..+|.
T Consensus 87 ~~~A~~va~~lgi~~~~~i~i~~~~~~~~-~~l~-----------------~~~~~~~~~~~~~N~~aR~r~~~l~~~A~ 148 (271)
T 1kqp_A 87 EDDAQLALKFIKPDKSWKFDIKSTVSAFS-DQYQ-----------------QETGDQLTDFNKGNVKARTRMIAQYAIGG 148 (271)
T ss_dssp HHHHHHHHHHHCCSEEEECCCHHHHHHHH-HHHH-----------------HHHSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeccHHHHHHHH-HHHh-----------------hhcCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 345667776 98 899999886442100 0111 00000000112344455688899999999
Q ss_pred hcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 243 KLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 243 ~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
++|+..+.+||. ++. ..| .. +.+ ......+.||.+++|.||+..++..|+|.
T Consensus 149 ~~g~lvl~tgn~-~E~--------~~G--y~----t~~----gd~~~~~~Pl~~l~K~eVr~la~~lglp~ 200 (271)
T 1kqp_A 149 QEGLLVLGTDHA-AEA--------VTG--FF----TKY----GDGGADLLPLTGLTKRQGRTLLKELGAPE 200 (271)
T ss_dssp HHTCEEBCCCCH-HHH--------TTT--CS----CTT----TTTCCSBCTTTTCCHHHHHHHHHHTTCCT
T ss_pred HCCCEEEECccH-HHh--------ccC--Cc----ccc----ccccccccccccCCHHHHHHHHHHcCCCH
Confidence 999887777664 332 122 11 111 11245689999999999999999999983
No 31
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.20 E-value=1.3e-10 Score=116.31 Aligned_cols=179 Identities=10% Similarity=-0.002 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhh-c-ccccceeEEEEEEeCCCCCccChHHH
Q psy3867 85 ACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLS-S-HKRILFSVCAIYIDDGSISQVSISER 162 (521)
Q Consensus 85 ~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~-~-~kr~~f~v~~v~ID~g~~~~~s~~e~ 162 (521)
+-+...+...++..+++++ ..++|+|++|||.||++++.+++.++..- . .+..++++.+++++.+.. .
T Consensus 20 ~~~i~~~~~~L~~~l~~~g---~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~--~----- 89 (275)
T 1wxi_A 20 EEEIRRSVDFLKSYLQTYP---FIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ--A----- 89 (275)
T ss_dssp HHHHHHHHHHHHHHHHHST---TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC--T-----
T ss_pred HHHHHHHHHHHHHHHHHcC---CCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc--c-----
Confidence 3445556666777776643 13589999999999999999987754210 0 000146888999886631 1
Q ss_pred HHHHHHHHHHhc--cC-CEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHH
Q psy3867 163 KANNAQIATAMK--YF-DSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQ 239 (521)
Q Consensus 163 ~~~l~~v~~~~e--g~-p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~ 239 (521)
+++.++++++ |+ +++++++.+++..-. ..+.. .+.+ ......+.+..++|..++..
T Consensus 90 --~~~dA~~va~~lgi~~~~~i~i~~~~~~~~-~~l~~-~g~~-----------------~~~~~~~N~~aR~r~~~l~~ 148 (275)
T 1wxi_A 90 --DEQDCQDAIAFIQPDRVLTVNIKGAVLASE-QALRE-AGIE-----------------LSDFVRGNEKARERMKAQYS 148 (275)
T ss_dssp --THHHHHHHHHHHCCSEEEECCCHHHHHHHH-HHHHH-HTCC-----------------CCHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCCeEEEEecHHHHHHHH-HHHHh-cCCC-----------------CCCchhhhhhhhHHHHHHHH
Confidence 2445677777 99 899999886542210 11110 0000 00012344445788889999
Q ss_pred HHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 240 AAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 240 ~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
+|.++|+.+|.|||..+. ..| .. +.+ ......+.||.+++|.||+..++..|+|.
T Consensus 149 ~A~~~g~lvlgTgn~~E~---------~~G--y~----t~~----gd~~~~~~PL~~l~K~eVr~la~~lglp~ 203 (275)
T 1wxi_A 149 IAGMTSGVVVGTDHAAEA---------ITG--FF----TKY----GDGGTDINPLYRLNKRQGKQLLAALACPE 203 (275)
T ss_dssp HHHHTTEEEBCCCCHHHH---------TTT--CS----CTT----TTTCCSBCTTTTCCHHHHHHHHHHTTCCG
T ss_pred HHHHCCCEEEECccHHHH---------ccC--cc----ccc----CCCccceeeccCCCHHHHHHHHHHhCCcH
Confidence 999999988888765432 122 11 111 11245699999999999999999999983
No 32
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.17 E-value=3.2e-10 Score=113.50 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=117.2
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhh--cccccceeEEEEEEeCCCCCccChH
Q psy3867 83 CKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLS--SHKRILFSVCAIYIDDGSISQVSIS 160 (521)
Q Consensus 83 Cr~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~--~~kr~~f~v~~v~ID~g~~~~~s~~ 160 (521)
-.+-.++.+...++..+++++ -++++|++|||.||++++.+++++...- .....++++.+++++++.. .
T Consensus 19 ~~~~~i~~~v~~L~d~l~~~g----~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~--~--- 89 (279)
T 3q4g_A 19 DPQFEIERRVAFIKRKLTEAR----YKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQ--K--- 89 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSC--S---
T ss_pred CHHHHHHHHHHHHHHHHHHcC----CCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCCh--H---
Confidence 344556666677777777765 3589999999999999999977653210 0011256889999997642 1
Q ss_pred HHHHHHHHHHHHhc--cC-CEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhh----hccCCCccHHHHHHHHH
Q psy3867 161 ERKANNAQIATAMK--YF-DSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMF----QTVTTLSSRQYLLQTLR 233 (521)
Q Consensus 161 e~~~~l~~v~~~~e--g~-p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~s~~s~Tsre~l~~~lR 233 (521)
..+.++++++ |+ +++++++++.|+.-. ..+ ...+...+ ..-.+..+.+.+..++|
T Consensus 90 ----~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~-~~~-------------~~~l~~~~~~~~~~~~~~~~~~NiqaR~R 151 (279)
T 3q4g_A 90 ----DEDEAQLALSFIRPTHSVSVNIKAGVDGLH-AAS-------------HHALANTGLIPSDPAKVDFIKGNVKARAR 151 (279)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECCCHHHHHHHH-HHH-------------HHHHHHHTCSCSSCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCeEEEEECHHHHHHHH-HHH-------------HHHhhhhcccccCCCcccchhhhHHHHHH
Confidence 2345667776 99 899999987553200 000 00011111 00111224678889999
Q ss_pred HHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 234 QNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 234 ~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
..+|..+|.++|+-.|-||| .++++ .| . .+-+.| ....+.||.+++|.||+..+++.|+|.
T Consensus 152 ~~~Ly~~A~~~g~lVlgTgn-~sE~~--------~G--y----~TkyGD----~~~di~Pl~dl~Kt~Vr~LA~~lgiP~ 212 (279)
T 3q4g_A 152 MVAQYEIAGYVGGLVLGTDH-SAENI--------TG--F----YTKFGD----GACDLAPLFGLNKRQVRLLAKTLGAPE 212 (279)
T ss_dssp HHHHHHHHHHHTEEEBCCCC-HHHHH--------HT--C----SCTTTT----TCCSBCTTTTCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCEEecCcc-HHhhh--------cc--c----hhhcCC----cccceeecCCCcHHHHHHHHHHhCCcH
Confidence 99999999999984444444 33322 23 1 122211 133589999999999999999999983
No 33
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.16 E-value=8.4e-11 Score=117.90 Aligned_cols=181 Identities=12% Similarity=-0.014 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 87 LLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 87 F~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
.++.+..-++..+++++ -++++|++|||.||+++++++..+...-...+...++.++++..+.. . ..
T Consensus 29 ~i~~~v~~L~d~l~~~g----~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~~--~-------~~ 95 (285)
T 3dpi_A 29 EAERRIGFVADYLRTAG----LRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQ--H-------DE 95 (285)
T ss_dssp HHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC------------C
T ss_pred HHHHHHHHHHHHHHHcC----CCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCCH--H-------HH
Confidence 33445555666666655 25899999999999999988765432110011223677787776531 1 23
Q ss_pred HHHHHHhc--c-CCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHh
Q psy3867 167 AQIATAMK--Y-FDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKK 243 (521)
Q Consensus 167 ~~v~~~~e--g-~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~ 243 (521)
+.++++++ | ++++++++.++|+.-. ..+.. .+... .. .. .+....+.+..++|..+|..+|.+
T Consensus 96 ~dA~~~a~~lg~i~~~~i~i~~~~~~~~-~~l~~-~g~~~---~~-~~--------~~~~~~~NiqaR~Rm~~L~~~A~~ 161 (285)
T 3dpi_A 96 ADARRALAFVRADETLTVDVKPAADAML-AALAA-GGLAY---LD-HA--------QQDFVLGNIKARERMIAQYAVAGA 161 (285)
T ss_dssp HHHHHHHHHHCCSEEEECCCHHHHHHHH-HHHHH-TTCCC---CC-HH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEChHHHHHHH-HHHHh-cCccc---cc-cC--------CCchhhhhHHHHHHHHHHHHHHHH
Confidence 34556665 6 7999999987553100 11110 00000 00 00 001246788899999999999999
Q ss_pred cCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCc
Q psy3867 244 LNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313 (521)
Q Consensus 244 lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~ 313 (521)
+|+-.|-|||.. +++ +....+ .| .....++||.+++|.||+..++..|+|.
T Consensus 162 ~g~lVlgTgn~s-E~~---~Gy~T~-~G--------------D~~~~~~Pl~~l~K~eV~~la~~lg~p~ 212 (285)
T 3dpi_A 162 RNGVVIGTDHAA-ESV---MGFFTK-FG--------------DGGADVLPLAGLTKRRVRALARMLGADE 212 (285)
T ss_dssp TTEEEBCCCCHH-HHH---HHHHHC-CC--------------CCCCSBCTTTTCCHHHHHHHHHHTTCCH
T ss_pred CCCEEEeCccHH-hhh---CCcccc-cC--------------CCceeEeeecCCcHHHHHHHHHHcCCCH
Confidence 998555555433 322 222211 11 1123689999999999999999999984
No 34
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.14 E-value=5.5e-11 Score=120.82 Aligned_cols=121 Identities=9% Similarity=0.046 Sum_probs=85.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHH----hc-cCCEEEEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATA----MK-YFDSYFTC 182 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~----~e-g~p~~iv~ 182 (521)
..|++|++|| .||+++++++.+ .|+++.++|++.+. .+.+...+.++.+ +. ++|+++++
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~---------~G~~v~~v~~~~~~------~~~~~a~~~a~~l~~~~~~~~i~~~vv~ 242 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMK---------RGVEVIPVYIGKDD------KNLEKVRSLWNLLKRYSYGSKGFLVVAE 242 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHH---------BTCEEEEEEESCSS------HHHHHHHHHHHHHHTTCTTSCCCCEEES
T ss_pred CCcEEEEEeC-CcHHHHHHHHHh---------CCCeEEEEEEEECH------HHHHHHHHHHHHHhhhccCCCCcEEEeC
Confidence 4699999999 999999999875 58999999999442 1111222223333 22 67777776
Q ss_pred -cccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHH
Q psy3867 183 -LEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATK 261 (521)
Q Consensus 183 -l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~ 261 (521)
+.+ .+ ++|+++|+++|+|||++.|.+.+
T Consensus 243 ~~~~-----------------------------------------~~----------~~A~~~ga~~I~tG~~~~~~~~q 271 (307)
T 1vbk_A 243 SFDR-----------------------------------------VL----------KLIRDFGVKGVIKGLRPNDLNSE 271 (307)
T ss_dssp SHHH-----------------------------------------HH----------HHHHHHTCCEEECCCCGGGCCTT
T ss_pred CCHH-----------------------------------------HH----------HHHHHcCCCEEEECcccchhccc
Confidence 441 00 78999999999999999876532
Q ss_pred HHH--HHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCC
Q psy3867 262 IIA--NISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDL 311 (521)
Q Consensus 262 ~L~--nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L 311 (521)
.+. .+.. .....++|||..++|+||+.+++..|+
T Consensus 272 t~~l~~~~~----------------~~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 272 VSEITEDFK----------------MFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp CHHHHHHHH----------------HCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred cHHHhhhcc----------------CcCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 222 1111 113568999999999999999998875
No 35
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.11 E-value=2.1e-10 Score=126.50 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccc-eeEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL-FSVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~-f~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.+..-+++.+++.+ .++|+|++|||+||++++.++.+.+ | .++.+++++.+.. +. .+++
T Consensus 311 ~~~~~~l~~~~~~~g----~~~vvvglSGGvDSsv~a~la~~al--------G~~~v~~v~m~~~~~---~~----~~~~ 371 (590)
T 3n05_A 311 SALVVGLRAYVAKNG----FRSVLIGLSGGIDSALVAAIACDAL--------GAQNVYGVSMPSKYS---SD----HSKG 371 (590)
T ss_dssp HHHHHHHHHHHHTTT----CCCEEEECCSSHHHHHHHHHHHHHH--------CGGGEEEEECCCSSC---CH----HHHH
T ss_pred HHHHHHHHHHHHHhC----CCcEEEEcCCCHHHHHHHHHHHHHh--------CcccEEEEEECCCCC---CH----HHHH
Confidence 344444555555543 3589999999999999999998744 4 5788999987642 22 3566
Q ss_pred HHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcC
Q psy3867 168 QIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLN 245 (521)
Q Consensus 168 ~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg 245 (521)
.++++++ |++++++++++.|.. +... + . ......+.+..++|..++..+|.++|
T Consensus 372 ~A~~la~~lgi~~~~i~i~~~~~~-----~~~~-------------l----~--~~~~~~~n~~ar~r~~~l~~~A~~~g 427 (590)
T 3n05_A 372 DAAELARRTGLNFRTVSIEPMFDA-----YMAS-------------L----G--LTGLAEENLQSRLRGTTLMAISNQEG 427 (590)
T ss_dssp HHHHHHHHHTCEEEECCSHHHHHH-----HHHH-------------H----C--CCTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEEEChHHHHH-----HHHH-------------h----c--ccchhhhHHHHHHHHHHHHHHHHhcC
Confidence 7888887 999999999864421 1000 0 0 01112345557789999999999999
Q ss_pred CCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCC
Q psy3867 246 CTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFND 310 (521)
Q Consensus 246 ~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~ 310 (521)
+..|.|| |.++.+ .| .. +.+ ......+.||.+++|.||+.+++..|
T Consensus 428 ~~vl~TG-n~se~~--------~G--y~----t~~----gd~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 428 HIVLAPG-NKSELA--------VG--YS----TLY----GDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp CEEBCCC-CHHHHH--------HT--CC----CSS----CTTSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred CEEEeCC-CHHHHh--------cC--ch----hhc----CCCccceeecCCCcHHHHHHHHHHhC
Confidence 9999999 555543 23 11 111 11245689999999999999999987
No 36
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.84 E-value=2.5e-08 Score=100.43 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHh----h-cCCCCC-CCeEEEecCCCccHHHHHHHHHHHhhhh----c---------ccccceeEEEEEE
Q psy3867 89 QYLNHKFRAALG----K-SKMMRP-QDKVLVAFSGSHSSMALLHLLQEGMQLS----S---------HKRILFSVCAIYI 149 (521)
Q Consensus 89 ~~i~~Kfr~~L~----k-~kli~~-~~kVLVa~SGG~DS~vLL~lL~~~l~~~----~---------~kr~~f~v~~v~I 149 (521)
+.+..++|.++. . ..-+.+ +++++|+||||+||+|||||+.+.+.+. . ++.....+.++||
T Consensus 33 ~~~q~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifi 112 (308)
T 3fwk_A 33 AQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFI 112 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEE
Confidence 445566665553 1 111222 4689999999999999999998865221 0 0001136778999
Q ss_pred eCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHH
Q psy3867 150 DDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQY 227 (521)
Q Consensus 150 D~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~ 227 (521)
|.|.. + .++.+++.++.+ |++++++.-+. . . .+ ++.
T Consensus 113 DTG~~--F-----pET~ef~d~~~~~ygL~L~v~~p~~----------~----~---------~~------------~~~ 150 (308)
T 3fwk_A 113 DHDDT--F-----KTLENFIEETSLRYSLSLYESDRDK----------C----E---------TM------------AEA 150 (308)
T ss_dssp CCTTC--C-----HHHHHHHHHHHHHTTEEEEECCTTS----------C----C---------CH------------HHH
T ss_pred eCCCC--C-----HHHHHHHHHHHHHhCCcEEEeCCCC----------C----H---------HH------------HHH
Confidence 99963 2 236777777776 66655533220 0 0 00 111
Q ss_pred HHHHHHHHHHHHHHHhc-CCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHH
Q psy3867 228 LLQTLRQNLLLQAAKKL-NCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYN 306 (521)
Q Consensus 228 l~~~lR~~lL~~~A~~l-g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya 306 (521)
+|+ +-+.. +++.+++|-..++ .. | +.++.. ...+..+.++..+.||.+|+..||+.|.
T Consensus 151 cc~---------~~K~~P~~~AwitG~RR~e-~~---------R-a~l~~~-e~~d~~w~~~iKVnPL~dWT~~DVW~YI 209 (308)
T 3fwk_A 151 FET---------FLQVFPETKAIVIGIRHTD-PF---------G-EHLKPI-QKTDANWPDFYRLQPLLHWNLANIWSFL 209 (308)
T ss_dssp HHH---------HHHHCTTCCEEECCCCTTS-TT---------C-TTCCSE-EECCTTSCSCEEECTTTTCCHHHHHHHH
T ss_pred HHH---------HHHhCCCCCEEEEEeecCC-cc---------c-CCCCee-eccCCCCCCeEEEechhhCCHHHHHHHH
Confidence 222 22223 6899999976653 10 1 112211 1111223456788999999999999999
Q ss_pred HHCCCCce
Q psy3867 307 IFNDLSPV 314 (521)
Q Consensus 307 ~~~~L~~~ 314 (521)
+.++||+.
T Consensus 210 ~~~~LPyn 217 (308)
T 3fwk_A 210 LYSNEPIC 217 (308)
T ss_dssp HHHTCCCC
T ss_pred HHcCCCCC
Confidence 99999964
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.71 E-value=7.2e-08 Score=107.05 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=105.2
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHH-------HHhhhhc-c--------ccc---------------
Q psy3867 92 NHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQ-------EGMQLSS-H--------KRI--------------- 140 (521)
Q Consensus 92 ~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~-------~~l~~~~-~--------kr~--------------- 140 (521)
..-+++.+++.+ .++|+|++|||.||++++.++. +.+.... . .+.
T Consensus 291 ~~~l~d~~~~~g----~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (634)
T 3ilv_A 291 SLGLFDYMRKSR----SKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKI 366 (634)
T ss_dssp HHHHHHHHHHTT----CCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHH
T ss_pred HHHHHHHHHHhC----CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHh
Confidence 444566666654 3689999999999999888854 2232110 0 000
Q ss_pred -ceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhh
Q psy3867 141 -LFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQ 217 (521)
Q Consensus 141 -~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 217 (521)
+.-+..+|+..-. .+. .+.+.++++++ |++++++++.+.|..-. ..+....+... ...
T Consensus 367 ~~~~~~~v~m~~~~---ss~----~~~~dA~~la~~LGi~~~~IdI~~~~~~~~-~~~~~~~g~~p----~~~------- 427 (634)
T 3ilv_A 367 TAVFLTTAYQSTRN---SGD----ETYTSAKTLAESIGATFYNWSVDEEIEQYK-ATIENVIERPL----TWE------- 427 (634)
T ss_dssp HHHHEEEEEEECTT---CCS----HHHHHHHHHHHHHTCEEEEEECHHHHHHHH-HHHHHHTTSCC----CTT-------
T ss_pred hhheeeeeecCCCC---CCH----HHHHHHHHHHHHhCCcEEEEccHHHHHHHH-HHHHHhhCCCc----ccc-------
Confidence 0116678877322 111 24556777777 99999999987653211 11110000000 000
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCC
Q psy3867 218 TVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDF 297 (521)
Q Consensus 218 s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~ 297 (521)
......+.+..++|..+|..+|.++|+..+.||| .+.+..|- .+-+.| ....+.||.++
T Consensus 428 --~~~~~~~N~qaR~R~~~l~~~A~~~g~lvlgTgn---------ksE~~~Gy------~T~ygD----~~~~~~Pl~~l 486 (634)
T 3ilv_A 428 --KDDITLQNIQARGRAPIIWMLTNVKQALLITTSN---------RSEGDVGY------ATMDGD----TAGGIAPIAGV 486 (634)
T ss_dssp --TCHHHHHHHHHHTTHHHHHHHHHHHTCEEBCCCC---------HHHHHTTC------SCTTTT----TCSSBBTTTTS
T ss_pred --cCcchhhhhhHHHHHHHHHHHHHhcCCEEeccCc---------hhhHhhCC------ccccCC----cccCCcccCCC
Confidence 0111346667788999999999999997777775 12223331 122211 12357899999
Q ss_pred CHHHHHHHHHHC----CCC
Q psy3867 298 SSKEVIYYNIFN----DLS 312 (521)
Q Consensus 298 ~kkEI~~Ya~~~----~L~ 312 (521)
+|.||+..+++. ++|
T Consensus 487 ~KteVr~la~~l~~~~glp 505 (634)
T 3ilv_A 487 DKDFIRSWLRWAEKNRNQH 505 (634)
T ss_dssp CHHHHHHHHHHHHHHSCCG
T ss_pred cHHHHHHHHHHHHHcCCCc
Confidence 999999999998 888
No 38
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.61 E-value=3.4e-07 Score=102.31 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccc---eeEEEEEEeCCCCCccChHHHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRIL---FSVCAIYIDDGSISQVSISERKANN 166 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~---f~v~~v~ID~g~~~~~s~~e~~~~l 166 (521)
.+..-+++.+++.+ .++|+|++|||+||++++.++.++.. .+| .++.+++++.... + +++.
T Consensus 347 ~~~~~l~~~l~~~g----~~~vvvglSGGvDSsvaa~l~~~a~~-----~lg~~~~~v~~v~m~~~~~---~----~~~~ 410 (680)
T 3sdb_A 347 IQVSGLEQRLRALD----YPKVVIGVSGGLDSTHALIVATHAMD-----REGRPRSDILAFALPGFAT---G----EHTK 410 (680)
T ss_dssp HHHHHHHHHHHHTT----SCEEEEECCSSHHHHHHHHHHHHHHH-----HTTCCGGGEEEEECCC---------------
T ss_pred HHHHHHHHHHHHcC----CCcEEEEecCCccHHHHHHHHHHHHH-----HhCCCCceEEEEEECCCCC---C----HHHH
Confidence 34455666666654 35899999999999998888766442 133 5788898885431 1 1245
Q ss_pred HHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhc
Q psy3867 167 AQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKL 244 (521)
Q Consensus 167 ~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~l 244 (521)
+.++++++ |++++++++++.|..-. ..+... +..... ......+.+..++|..+|..+|.+.
T Consensus 411 ~~A~~la~~lgi~~~~i~i~~~~~~~~-~~l~~~-------~~~~~~--------~~~~~~~N~~ar~R~~~l~~~A~~~ 474 (680)
T 3sdb_A 411 NNAIKLARALGVTFSEIDIGDTARLML-HTIGHP-------YSVGEK--------VYDVTFENVQAGLRTDYLFRIANQR 474 (680)
T ss_dssp CHHHHHHHHHTCEEEECCCHHHHHHHH-HHC---------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECHHHHHHHH-HHhchh-------hcCCCC--------CcchhHHHhhHHHHHHHHHHHHHHc
Confidence 56777777 99999999987553210 000000 000000 0112356667789999999999999
Q ss_pred CCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcC-CCCCCCCeeeeecCCCCCHHHHHHHHHHC
Q psy3867 245 NCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGF-SDDRTGDIITLRPLRDFSSKEVIYYNIFN 309 (521)
Q Consensus 245 g~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~-~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~ 309 (521)
|+-.+-||+ .+++ ..|-+ +-+ .| ....+.||.+++|.||+..+++.
T Consensus 475 g~lvlgTgn-~sE~--------~~Gy~------T~~~gD----~~~~~~Pl~~l~K~eVr~lar~l 521 (680)
T 3sdb_A 475 GGIVLGTGD-LSEL--------ALGWS------TYGVGD----QMSHYNVNAGVPKTLIQHLIRWV 521 (680)
T ss_dssp TEEEEECCC-HHHH--------HHTCS------CCSSST----TCCSEETTTTSCHHHHHHHHHHH
T ss_pred CCEEEeCCc-HHhH--------hcCee------eccCCC----ccccccccCCCcHHHHHHHHHHH
Confidence 985555553 3222 22311 111 11 12347899999999999999887
No 39
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.51 E-value=4e-07 Score=88.77 Aligned_cols=138 Identities=14% Similarity=0.025 Sum_probs=88.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCc-cChHHHHHHHHHHHHHhc--cCCEEEEEccc
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQ-VSISERKANNAQIATAMK--YFDSYFTCLEQ 185 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~-~s~~e~~~~l~~v~~~~e--g~p~~iv~l~e 185 (521)
.|++|++|||+||++.|+++.+ .|+++.+++...+...+ +.. .....+.++.+++ |+|++++++..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~---------~G~eV~~L~~~~~~~~~s~~~--h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK---------NRFSVKFLVTMVSENEESYMY--HTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH---------TTCEEEEEEEEECC----------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred CEEEEEecCcHHHHHHHHHHHH---------cCCeEEEEEEEcCCCCCcccc--CCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4899999999999999998875 47899888776554210 000 0012345667777 99999999863
Q ss_pred ccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHH
Q psy3867 186 ALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIAN 265 (521)
Q Consensus 186 vf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~n 265 (521)
. . +.+ .++ |.+..++.|.+.|++|+-..+--..-..+
T Consensus 74 ~--------~--~~e------------------------~e~---------l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~ 110 (237)
T 3rjz_A 74 E--------K--EKE------------------------VED---------LKRVLSGLKIQGIVAGALASKYQRKRIEK 110 (237)
T ss_dssp --------------C------------------------HHH---------HHHHHTTSCCSEEECC---CCSHHHHHHH
T ss_pred C--------c--hHH------------------------HHH---------HHHHHHhcCCcEEEECCcchHHHHHHHHH
Confidence 1 0 000 012 12222445999999998765544455566
Q ss_pred HhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceec
Q psy3867 266 ISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHV 316 (521)
Q Consensus 266 l~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~ 316 (521)
++.. -+++.+.||......|+..-.-..|+..+..
T Consensus 111 vc~~----------------~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv 145 (237)
T 3rjz_A 111 VAKE----------------LGLEVYTPAWGRDAKEYMRELLNLGFKIMVV 145 (237)
T ss_dssp HHHH----------------TTCEEECSSSSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHH----------------cCCEEEccccCCCHHHHHHHHHHCCCEEEEE
Confidence 6532 1367899999999999988888889887654
No 40
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.07 E-value=3e-05 Score=84.82 Aligned_cols=173 Identities=12% Similarity=0.179 Sum_probs=107.8
Q ss_pred cchHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHH
Q psy3867 82 YCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISE 161 (521)
Q Consensus 82 ~Cr~CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e 161 (521)
.|.+.|.. +.--+|+.+++.+. ++++|++|||.||++++.+..+++.. -++.++++-.-. .+.
T Consensus 279 ~~~~~~~a-~~~gl~dy~~k~g~----~~~vlglSGGiDSal~~~la~~alg~-------~~v~~v~mp~~~---ts~-- 341 (565)
T 4f4h_A 279 VEAQVYRA-LVLGVRDYIGKNGF----PGAIIGLSGGVDSALVLAVAVDALGA-------ERVRAVMMPSRY---TAG-- 341 (565)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTTC----CCEEEECCSSHHHHHHHHHHHHHHCG-------GGEEEEECCCTT---CCH--
T ss_pred hHHHHHHH-HHHHHHHHHHHcCC----CcEEEecCCCccHHHHHHHHHHHhCC-------ccEEEEeccccc---ccc--
Confidence 34455533 33446666777653 57999999999999999998776632 246666654321 222
Q ss_pred HHHHHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHH
Q psy3867 162 RKANNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQ 239 (521)
Q Consensus 162 ~~~~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~ 239 (521)
.+...++++++ |+.++.++++.+++. +.. .+...+.......+.+.+-.++|..+|..
T Consensus 342 --~t~~~a~~la~~lg~~~~~i~i~~~~~~-----~~~-------------~~~~~~~~~~~d~~~eN~qaR~R~~~l~~ 401 (565)
T 4f4h_A 342 --ISTTDAADMARRVGVRYDEIAIAPMFDA-----FRA-------------SLAAEFAGLAEDATEENIQARIRGTLLMA 401 (565)
T ss_dssp --HHHHHHHHHHHHHTCEEEECCCHHHHHH-----HHH-------------HHTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHhCCceeeeecchHHHH-----HHH-------------HhhhcccCccchhhHhhhcchhhHHHHHH
Confidence 24455677777 999999999864421 110 11111111112234567778999999999
Q ss_pred HHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCC
Q psy3867 240 AAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFND 310 (521)
Q Consensus 240 ~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~ 310 (521)
+|.+.|.=.+-||+ .++ ++.| +.+-+.| ..--+-|+.+++|.+|...+++.+
T Consensus 402 ~an~~g~lvlgTgn-~sE--------~a~G------y~T~~Gd----~~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 402 LSNKFGSIVLTTGN-KSE--------MAVG------YCTLYGD----MAGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp HHHHHCCEEEECCC-HHH--------HHHT------CSCTTTT----TCSSEETTTTCCHHHHHHHHHHHH
T ss_pred HHhhcCCcccCCCc-hhh--------Hhhc------cccccCC----cccCchhccCccHHHHHHHHHHHh
Confidence 99999985555553 222 2333 1122222 123488999999999999998865
No 41
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.86 E-value=0.00011 Score=80.26 Aligned_cols=138 Identities=7% Similarity=0.023 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhc-c--cccce--eEEEEEEeCCCCCccChHHHHH
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSS-H--KRILF--SVCAIYIDDGSISQVSISERKA 164 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~-~--kr~~f--~v~~v~ID~g~~~~~s~~e~~~ 164 (521)
.++..+.+++++ + +..+.+|.|++|||+||++++.++.+...... . ....| .+..++|... +. .
T Consensus 210 ~lr~~L~~aV~~-r-l~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~---~~------~ 278 (553)
T 1ct9_A 210 ELRQALEDSVKS-H-LMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP---GS------P 278 (553)
T ss_dssp HHHHHHHHHHHH-H-TCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST---TC------H
T ss_pred HHHHHHHHHHHH-H-hcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC---CC------c
Confidence 445555555554 2 23456899999999999999999987432100 0 00001 2455666532 11 1
Q ss_pred HHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867 165 NNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK 242 (521)
Q Consensus 165 ~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~ 242 (521)
+...++++++ |++++++.+... .+. +.+..+.....+..... ....+...++.+.|+
T Consensus 279 E~~~A~~vA~~lg~~h~~i~~~~~-------~~~-------------~~l~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~ 337 (553)
T 1ct9_A 279 DLKAAQEVANHLGTVHHEIHFTVQ-------EGL-------------DAIRDVIYHIETYDVTT-IRASTPMYLMSRKIK 337 (553)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCHH-------HHH-------------HHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEECCHH-------HHH-------------HHHHHHHHHhcCCCccc-chHHHHHHHHHHHHH
Confidence 3456778887 999999988631 000 00111110011100001 111233456778889
Q ss_pred hcCCCeEEeccCcchhH
Q psy3867 243 KLNCTKIFTAETQTDLA 259 (521)
Q Consensus 243 ~lg~~~V~tGh~~dDlA 259 (521)
+.|++.|++|+.+|++.
T Consensus 338 ~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 338 AMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HTTCCEEECCTTHHHHH
T ss_pred HcCCeEEEECCCchhcc
Confidence 99999999999999865
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.71 E-value=0.00012 Score=78.92 Aligned_cols=129 Identities=11% Similarity=-0.023 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~ 168 (521)
+.+...+++++++. +..+.+|.+++|||.||++++.++++ .+.++..+++.... .. +...
T Consensus 221 ~~l~~~L~~aV~~r--l~sd~~v~v~LSGGlDSs~vaala~~---------~~~~~~~~t~~~~~---~~------E~~~ 280 (503)
T 1q15_A 221 ALIDRYLNAPLEDL--APRFDTVGIPLSGGLDSSLVTALASR---------HFKKLNTYSIGTEL---SN------EFEF 280 (503)
T ss_dssp HHHHHHHHHHHHHH--GGGCSEEEEECCSSHHHHHHHHHHTT---------TCSEEEEEEEEETT---BC------CHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCcEEEECCCCHHHHHHHHHHHH---------hCCCcEEEEEeCCC---cc------HHHH
Confidence 44455555555442 23356899999999999999998864 12356667766431 11 2455
Q ss_pred HHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3867 169 IATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNC 246 (521)
Q Consensus 169 v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~ 246 (521)
++++++ |++++++.+++. .+.. .+.......... .+......+...++.+.| +.|+
T Consensus 281 A~~vA~~lg~~h~~i~~~~~-------~~~~-------------~l~~~~~~~~~~-~p~~~~~~~~~~~l~~~a-~~~~ 338 (503)
T 1q15_A 281 SQQVADALGTHHQMKILSET-------EVIN-------------GIIESIYYNEIF-DGLSAEIQSGLFNVYRQA-QGQV 338 (503)
T ss_dssp HHHHHHHHTCEEEEEEECHH-------HHHH-------------HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH-BTTB
T ss_pred HHHHHHHhCCceEEEECCHH-------HHHH-------------HHHHHHHHhcCC-CcccchhHHHHHHHHHHH-HCCC
Confidence 777777 999999988741 0100 000000000000 012222334445666777 6899
Q ss_pred CeEEeccCcchhH
Q psy3867 247 TKIFTAETQTDLA 259 (521)
Q Consensus 247 ~~V~tGh~~dDlA 259 (521)
..|++|+.+|++.
T Consensus 339 ~VvltG~GaDElf 351 (503)
T 1q15_A 339 SCMLTGYGSDLLF 351 (503)
T ss_dssp SEEECCTTHHHHH
T ss_pred CEEEeCCChhhhc
Confidence 9999999998864
No 43
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.69 E-value=0.00018 Score=77.85 Aligned_cols=130 Identities=10% Similarity=0.056 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 88 LQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 88 ~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
.+.+...+++++++. +..+.+|.+.+|||.||++++.++.+.. .++..++|.... .. +..
T Consensus 223 ~~~l~~~L~~aV~~r--l~sd~~vgv~LSGGlDSS~vaala~~~~---------~~v~tfti~~~~---~~------E~~ 282 (513)
T 1jgt_A 223 VAAVRAALEKAVAQR--VTPGDTPLVVLSGGIDSSGVAACAHRAA---------GELDTVSMGTDT---SN------EFR 282 (513)
T ss_dssp HHHHHHHHHHHHHHH--SCTTCCCEEECCSSHHHHHHHHHHHHHH---------SSCEEEEEECSS---CC------CHH
T ss_pred HHHHHHHHHHHHHHH--HhCCCcEEEECCCcHHHHHHHHHHHHhC---------CCceEEEcCCCC---CC------HHH
Confidence 344555555555542 2345689999999999999999987632 134556665431 11 345
Q ss_pred HHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcC
Q psy3867 168 QIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLN 245 (521)
Q Consensus 168 ~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg 245 (521)
.++++++ |++++++.++.. .+.. .+..+....... .+......+-..++.+.| +.|
T Consensus 283 ~A~~vA~~lg~~h~~i~i~~~-------~~~~-------------~l~~~~~~~~~~-~p~~~~~~~~~~~l~~~a-~~g 340 (513)
T 1jgt_A 283 EARAVVDHLRTRHREITIPTT-------ELLA-------------QLPYAVWASESV-DPDIIEYLLPLTALYRAL-DGP 340 (513)
T ss_dssp HHHHHHHHHTCEEEEEECCHH-------HHHT-------------THHHHHHHHCCC-CHHHHHHHHHHHHHHHHC-CSS
T ss_pred HHHHHHHHhCCCcEEEECCHH-------HHHH-------------HHHHHHHHhCCC-CcccchhHHHHHHHHHHH-HcC
Confidence 5777777 999999988741 0100 000000000000 122222233334555666 689
Q ss_pred CCeEEeccCcchhH
Q psy3867 246 CTKIFTAETQTDLA 259 (521)
Q Consensus 246 ~~~V~tGh~~dDlA 259 (521)
++.|++|+.+|++.
T Consensus 341 ~~VvltG~GaDElf 354 (513)
T 1jgt_A 341 ERRILTGYGADIPL 354 (513)
T ss_dssp CCEEECCTTTHHHH
T ss_pred CCEEEeCCChhhcc
Confidence 99999999999864
No 44
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=91.30 E-value=0.86 Score=38.94 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=30.1
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++|||++.|+..|..++....+ +. ++.+-++.++||-..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~-la----~~~~a~l~ll~v~~~ 41 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVG-LQ----QLTGAELYILCVFKH 41 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHH-HH----HHHCCEEEEEEEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHH-HH----HhcCCEEEEEEEecC
Confidence 4899999999999888887765 32 224678899999753
No 45
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=90.06 E-value=3.5 Score=36.17 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=30.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
-++|||+++|+.+|..++..+.. + .++.+-++.++||-.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~-l----a~~~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEK-R----NKMEVGEVILLHVID 43 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHH-H----CCSCCSEEEEEEEEE
T ss_pred cceEEEEecCCHHHHHHHHHHHH-H----HHhcCCEEEEEEEec
Confidence 35899999999999888877755 3 234567899999853
No 46
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=89.77 E-value=3 Score=35.38 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=29.9
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++|||++.|+..|..++..... +. ++.+-++.++||-+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~-la----~~~~a~l~ll~v~~~ 44 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVN-IA----QRHQANLTALYVVDD 44 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH-HH----HHHTCEEEEEEEEEC
T ss_pred ceEEEEcCCCHHHHHHHHHHHH-HH----HhcCCEEEEEEEecC
Confidence 5899999999999888887765 32 224668889998654
No 47
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=89.32 E-value=2.1 Score=36.05 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.8
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
++|||++.|+..|..++..+.. +. .++.+-++.++||-+..
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~-la---~~~~~a~l~ll~v~~~~ 42 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILD-MF---GKDADCTLTLIHVKPEF 42 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHH-HH---TTCTTEEEEEEEEECCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHH-Hh---ccCCCCEEEEEEEecCC
Confidence 4799999999999988888765 32 03467789999997654
No 48
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=89.24 E-value=2.2 Score=37.75 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE--EEe
Q psy3867 106 RPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI--YID 150 (521)
Q Consensus 106 ~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v--~ID 150 (521)
...++|||+++|+..|..++..+.+ +. + .+-++.++ ||-
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~-lA----~-~~a~l~ll~a~v~ 55 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQ-IA----G-ADAKLIIASAYLP 55 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHH-HH----T-TTSEEEEEEECCC
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHH-Hh----C-CCCEEEEEEeeec
Confidence 3456999999999999888877765 32 3 46688888 764
No 49
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.69 E-value=6.2 Score=33.58 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
-++|||++.|+..|..++..+.. +.+ +.+-++.++||-..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~-la~----~~~a~l~ll~v~~~ 45 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRN-LAS----QIGARLSLIHVLDN 45 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHH-HHH----HHTCEEEEEEEEC-
T ss_pred cceEEEEeCCCHHHHHHHHHHHH-HHh----hcCCEEEEEEEEcC
Confidence 46899999999999888887765 322 24668889998643
No 50
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=87.99 E-value=6.5 Score=34.26 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=40.6
Q ss_pred CeEEEecCC-CccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChH---HHHHHHHHHHHHhc--cCCEEE
Q psy3867 109 DKVLVAFSG-SHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSIS---ERKANNAQIATAMK--YFDSYF 180 (521)
Q Consensus 109 ~kVLVa~SG-G~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~---e~~~~l~~v~~~~e--g~p~~i 180 (521)
++|||++.| +..|..++..+.. +.+ +.+-++.++||-+.... .... +.++.++.+.+.++ |+++.+
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~-la~----~~~a~l~llhV~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 96 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAE-EAR----LRGVPVYVVHSLPGGGR-TKDEDIIEAKETLSWAVSIIRKEGAEGEE 96 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHH-HHH----HHTCCEEEEEEECCSTT-SCHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHH-HHH----hcCCEEEEEEEEcCCCc-ccHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 589999999 9999888887765 322 24568899999765321 1111 12233444444444 776654
No 51
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=87.85 E-value=3.5 Score=35.78 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=30.2
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
-++|||++.|+..|..++..+.+ + .++.+-++.++||-.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~-l----a~~~~a~l~ll~v~~ 43 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKA-F----KTLKAEEVILLHVID 43 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHH-T----CCSSCCEEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHH-H----HhhcCCeEEEEEEec
Confidence 35899999999999988877765 3 234577899999854
No 52
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=86.38 E-value=6.9 Score=32.84 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=29.1
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
++|||+++|+..|..++..+.. +. ++.+-++.++||..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~-la----~~~~a~l~ll~v~~ 40 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKA-EA----EAHGARLIVVHAYE 40 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH-HH----HHHTCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHH-HH----hhcCCEEEEEEEec
Confidence 4899999999999888877655 32 23466888999875
No 53
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=85.95 E-value=3.3 Score=35.04 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=29.4
Q ss_pred CeEEEecCCCcc--HHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 109 DKVLVAFSGSHS--SMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 109 ~kVLVa~SGG~D--S~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
++|||++.|+.. |..++..+.. +. ++.+-++.++||-+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~-la----~~~~a~l~ll~v~~~ 42 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVES-EA----RIDDAEVHFLTVIPS 42 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHH-HH----HHHTCEEEEEEEECC
T ss_pred CEEEEEecCChHhhHHHHHHHHHH-HH----HhcCCeEEEEEEecC
Confidence 589999999999 8877777654 32 224668889998754
No 54
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=85.43 E-value=6.1 Score=38.07 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEEEcc
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFTCLE 184 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv~l~ 184 (521)
..++|+|++.|+..|.-++..+..... ..+-++.++||..... . ++.++.+.+.++ |++..+.-..
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~-----~~~~~l~ll~v~~~~~---~----~~~l~~~~~~l~~~~~~~~~~~~~ 236 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVK-----KTGGELHIIHVSEDGD---K----TADLRVMEEVIGAEGIEVHVHIES 236 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHH-----HHTCEEEEEEECSSSC---C----HHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhh-----hcCCEEEEEEEccCch---H----HHHHHHHHHHHHHcCCcEEEEEec
Confidence 447899999999999888887765322 2466899999986531 1 123455555554 7774432211
Q ss_pred cccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcch
Q psy3867 185 QALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTD 257 (521)
Q Consensus 185 evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dD 257 (521)
+ + -...|.++|++.+++.|++|.+...
T Consensus 237 -----------g-~----------------------------------~~~~I~~~a~~~~~dLlV~G~~~~~ 263 (294)
T 3loq_A 237 -----------G-T----------------------------------PHKAILAKREEINATTIFMGSRGAG 263 (294)
T ss_dssp -----------S-C----------------------------------HHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred -----------C-C----------------------------------HHHHHHHHHHhcCcCEEEEeCCCCC
Confidence 0 0 0123558899999999999977543
No 55
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=83.48 E-value=7.4 Score=33.48 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=29.7
Q ss_pred CCeEEEecC--CCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 108 QDKVLVAFS--GSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 108 ~~kVLVa~S--GG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
-++|||++. |+..|..++..+.+ +.+ +.+-++.++||-+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~-la~----~~~a~l~ll~v~~~ 56 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATT-LAH----DYDVPLGICSVLES 56 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHH-HHH----HHTCCEEEEEEECC
T ss_pred CceEEEEECCCCCHHHHHHHHHHHH-HHH----hcCCEEEEEEEEeC
Confidence 458999999 99999988888765 322 24568889998654
No 56
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=82.83 E-value=7.7 Score=34.13 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=28.4
Q ss_pred CeEEEecCCCc---------cHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSH---------SSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~---------DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
++|||++.|.. .|..++....+.+.+. ...+-++.++||..
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~--~~~~a~l~ll~v~~ 55 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS--NTSDFKILLLHVQV 55 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTT--CTTSEEEEEEEEEC
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcc--cCCCCEEEEEEEee
Confidence 58999999999 8887777765522110 01466888999853
No 57
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=81.54 E-value=20 Score=29.85 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=28.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEe
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID 150 (521)
++|||++.|+..|..++..+.+ +. ++.+-++.++||.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~-la----~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVG-IA----KRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHH-HH----HHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHH-HH----HhcCCEEEEEEEe
Confidence 4899999999999888877655 32 2345688899986
No 58
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=78.39 E-value=20 Score=34.23 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=30.0
Q ss_pred CCCeEEEecCCCcc-------HHHHHHHHHHHhhhhcccccceeEEEEEEeCC
Q psy3867 107 PQDKVLVAFSGSHS-------SMALLHLLQEGMQLSSHKRILFSVCAIYIDDG 152 (521)
Q Consensus 107 ~~~kVLVa~SGG~D-------S~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g 152 (521)
+.++|||++.|+.. |.-++..+.. +. +..+-++.++||...
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~-la----~~~~a~l~ll~v~~~ 180 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYD-IA----GLAKATLHVISAHPS 180 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHH-HH----HHTTCEEEEEEEEC-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHH-HH----HHcCCeEEEEEEecC
Confidence 45799999999998 7777776655 32 234678999999764
No 59
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=77.61 E-value=1.9 Score=32.45 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=22.7
Q ss_pred cCccccccCCCCceEEecCC----cccchHHHHHHH
Q psy3867 60 ADKLCPRCNTNNGEVVLRLK----DIYCKACLLQYL 91 (521)
Q Consensus 60 ~~~~C~kCk~~~a~i~~r~~----~~~Cr~CF~~~i 91 (521)
..+.|+||+..|..-.+..+ -..|+.||...|
T Consensus 21 rvrpcvkckvaprdwkvknkhlriynmcktcfnnsi 56 (81)
T 2p09_A 21 RVRPCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSI 56 (81)
T ss_dssp HHSCCTTTSSSCCCEEEETTEEEEESSCHHHHHHHH
T ss_pred hcccceeeeecCccceeccceeeHHHHHHHHhcCce
Confidence 44789999987766555421 357999998765
No 60
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=74.17 E-value=43 Score=32.17 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCeEEeccCc-chhHHHHHHHHhc
Q psy3867 236 LLLQAAKKLNCTKIFTAETQ-TDLATKIIANISL 268 (521)
Q Consensus 236 lL~~~A~~lg~~~V~tGh~~-dDlA~~~L~nl~~ 268 (521)
.|.++|++++++.|++|.+. ..+...++.+++.
T Consensus 257 ~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~ 290 (319)
T 3olq_A 257 VIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAE 290 (319)
T ss_dssp HHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEeccCccCCccccccHHHH
Confidence 46689999999999999864 3455555555553
No 61
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=71.20 E-value=10 Score=31.72 Aligned_cols=71 Identities=21% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccC---------hHHHHHHHHHHHHHhc--cC
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVS---------ISERKANNAQIATAMK--YF 176 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s---------~~e~~~~l~~v~~~~e--g~ 176 (521)
.-||+|+.+||.+|+.|+.-+++.... .++++.+.....+.....- +. -.-..+++++.++ |+
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~-----~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQ-V~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANL-----TEVRVIANSGAYGAHYDIMGVYDLIILAPQ-VRSYYREMKVDAERLGI 79 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHH-----HTCSEEEEEEETTSCTTTGGGCSEEEECGG-GGGGHHHHHHHHTTTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-----CCCceEEEEcchHHHHhhccCCCEEEEChH-HHHHHHHHHHHhhhcCC
Confidence 348999999999999988877775432 3555555554443321110 11 1113566777776 88
Q ss_pred CEEEEEcc
Q psy3867 177 DSYFTCLE 184 (521)
Q Consensus 177 p~~iv~l~ 184 (521)
|..+++..
T Consensus 80 pV~vI~~~ 87 (108)
T 3nbm_A 80 QIVATRGM 87 (108)
T ss_dssp EEEECCHH
T ss_pred cEEEeCHH
Confidence 88888765
No 62
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=66.47 E-value=15 Score=35.25 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=40.6
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYFT 181 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~iv 181 (521)
-++|||++.|+..|..++..... +.+ +.+-++.++|+.+. .. .++.++.+.+.+. |+++...
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~-la~----~~~a~l~ll~v~~~---~~----~~~~l~~~~~~~~~~~~~~~~~ 70 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQL-IAG----VTQSHLHLLVCEKR---RD----HSAALNDLAQELREEGYSVSTN 70 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHH-HHH----HHCCEEEEEEECSS---SC----CHHHHHHHHHHHHHTTCCEEEE
T ss_pred hceEEEEeCCCccchHHHHHHHH-HHH----hcCCeEEEEEeeCc---HH----HHHHHHHHHHHHhhCCCeEEEE
Confidence 46999999999999888887765 322 34668899999763 11 1223444444443 7776654
No 63
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=64.68 E-value=22 Score=34.34 Aligned_cols=38 Identities=13% Similarity=-0.005 Sum_probs=28.8
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
++|||++.|...|..++..... +. ++.+-.+.++|+-.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~-lA----~~~~a~l~ll~v~~ 45 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVY-IV----QRNGGRIKAFLPVY 45 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHH-HH----HHHCCEEEEEEEEC
T ss_pred ceEEEEECCCcccHHHHHHHHH-HH----HHcCCeEEEEEEec
Confidence 5899999999999888877654 32 23466888999853
No 64
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.99 E-value=8.8 Score=29.31 Aligned_cols=28 Identities=25% Similarity=0.594 Sum_probs=23.3
Q ss_pred ccccccCCCCceEEec--CCcccchHHHHHH
Q psy3867 62 KLCPRCNTNNGEVVLR--LKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~~a~i~~r--~~~~~Cr~CF~~~ 90 (521)
..|..|.+ .|++.-. .++-||..||.+.
T Consensus 9 pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNE-DATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCS-CCCEEETTTTSEEECSSHHHHH
T ss_pred CeeEEeCC-CCeEEecCCCCceehHHHHHHH
Confidence 57999998 6887665 5799999999875
No 65
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=52.48 E-value=2.4 Score=39.39 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=27.8
Q ss_pred CCCcccccccccchhhhhcccccccCcccCccccccCCCCceEEecCCcccchHHHH
Q psy3867 32 PRACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLL 88 (521)
Q Consensus 32 ~~mc~~~e~~~~~~~~~~~~~~~~~~~~~~~~C~kCk~~~a~i~~r~~~~~Cr~CF~ 88 (521)
+.++++.+-...++. +|+ .++.....|.+|++. +.. .+..+|+.||.
T Consensus 140 ~elf~v~~v~~~~~~-----~p~-~~~~~~~~C~~CGE~--~~~--~g~~~C~~C~~ 186 (191)
T 3d00_A 140 PDILELRNVKLKPGF-----LEK-KHKGKIVLCPQCREA--YPA--QDGELCLSCQG 186 (191)
T ss_dssp GGGEEEEEEECCGGG-----GCC-CCCCCEEECTTTCCE--EEG--GGCSSCHHHHT
T ss_pred hheEEEEEecccccc-----CCC-cCCcCCEECCcCCCC--hhh--CCCcCCccccC
Confidence 455666555443111 122 223456789999983 222 27899999995
No 66
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=52.02 E-value=19 Score=29.85 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=30.3
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGS 153 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~ 153 (521)
.||||+.++|..|+.++.-+++.+. +.++++.+-+++.+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~-----~~gi~~~i~a~~~~~ 43 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAE-----KYEVPVIIEAFPETL 43 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHH-----HSCCSEEEEEECSSS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHH-----HCCCCeEEEEecHHH
Confidence 3799999999999988887777654 346666667666654
No 67
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.60 E-value=16 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=21.1
Q ss_pred CccccccCCCCceEEec-CCcccchHHHHHHH
Q psy3867 61 DKLCPRCNTNNGEVVLR-LKDIYCKACLLQYL 91 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r-~~~~~Cr~CF~~~i 91 (521)
...|..|+.. ..+ +| .+..+|+.||.+..
T Consensus 18 ~~rC~vcGr~-~g~-iRkfGL~~cR~cfRe~A 47 (56)
T 3j20_P 18 ARRCIRCGQY-GPI-IRIQGLMLCRHCFREVA 47 (56)
T ss_dssp TCCCSSSCCS-SSC-CCTTTCCCCHHHHHHHH
T ss_pred ceEeecCCCC-ccc-ccccCChHHHHHHHHHH
Confidence 3679999983 333 34 57778999998764
No 68
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=49.95 E-value=5.6 Score=37.25 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=21.6
Q ss_pred cccCccccccCCCCce--EEecCCcccchHHHHH
Q psy3867 58 SRADKLCPRCNTNNGE--VVLRLKDIYCKACLLQ 89 (521)
Q Consensus 58 ~~~~~~C~kCk~~~a~--i~~r~~~~~Cr~CF~~ 89 (521)
......|.+|++.-+. .++..+..+|+.||..
T Consensus 169 ~~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 169 NGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp CCCEEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred CCCceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3455789999984222 2334578999999953
No 69
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=49.23 E-value=24 Score=33.78 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
.-++|||+++|+..|..++..... +. ++.+-++.++||-+
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~-lA----~~~~a~l~ll~v~~ 60 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGD-FK----KVGVEEIGVLFVIN 60 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHH-HH----HTTCCEEEEECCEE
T ss_pred hhccEEEecCCCHHHHHHHHHHHH-HH----hhcCCEEEEEEEec
Confidence 346999999999999888877655 32 23567888888754
No 70
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=46.72 E-value=15 Score=27.15 Aligned_cols=29 Identities=14% Similarity=0.500 Sum_probs=20.8
Q ss_pred ccccccCCCCceEEecCCcccchHHHHHHH
Q psy3867 62 KLCPRCNTNNGEVVLRLKDIYCKACLLQYL 91 (521)
Q Consensus 62 ~~C~kCk~~~a~i~~r~~~~~Cr~CF~~~i 91 (521)
..|..|+.. ..++-..+..+|+.||.++.
T Consensus 19 ~rC~vcGr~-~g~iRkfGl~lcR~cfRe~A 47 (56)
T 3u5c_d 19 RQCRVCSSH-TGLIRKYGLNICRQCFREKA 47 (56)
T ss_dssp CCCTTTCCC-SSEECGGGCCEEHHHHHHHH
T ss_pred ceeecCCCC-cccccccCcchhHHHHHHHH
Confidence 679999983 33322346779999998764
No 71
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=45.34 E-value=30 Score=32.38 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.3
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeC
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDD 151 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~ 151 (521)
++|||+++|+..|..++..... +.+ +.+-++.++|+-+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~-lA~----~~~a~l~ll~v~~ 38 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEW-LAY----KLSAPLTVLFVVD 38 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHH-HHH----HHTCCEEEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHH-HHH----HhCCcEEEEEEec
Confidence 3799999999999988877655 322 2456788888753
No 72
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=39.59 E-value=20 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.597 Sum_probs=21.4
Q ss_pred CccccccCCCCceEEec-CCcccchHHHHHHH
Q psy3867 61 DKLCPRCNTNNGEVVLR-LKDIYCKACLLQYL 91 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r-~~~~~Cr~CF~~~i 91 (521)
...|..|+...+. +| .+..+|+.||.+..
T Consensus 17 ~nrC~~cGr~rg~--iRkfgl~lcR~cFRe~A 46 (55)
T 2xzm_N 17 SKECRVCGARQGL--ITKYEMMTCRRCFREQA 46 (55)
T ss_dssp GCCCTTTCCSSTT--CCCSSSCCCHHHHHHHH
T ss_pred ceEeecCCCCcch--HHHhCCchhhHHHHHHH
Confidence 4779999984343 34 46789999998764
No 73
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.78 E-value=19 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=18.8
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 356666542 22344556889999999754
No 74
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=35.70 E-value=41 Score=31.42 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI 147 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v 147 (521)
+++|+|++|||....-.+.++.. |. +.++++.++
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~-L~-----~~g~eV~vv 37 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDC-LV-----QEEREVHFL 37 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHH-HH-----HTTCEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHH-HH-----HCCCEEEEE
Confidence 46899999999999999998876 43 247788776
No 75
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=35.14 E-value=35 Score=28.27 Aligned_cols=37 Identities=5% Similarity=0.009 Sum_probs=29.0
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEe
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID 150 (521)
++|||++.|...|..++..... +. ++.+-++.++|+-
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~-la----~~~~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVN-FS----EKLGAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHH-HH----TTTCCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHH-HH----HHcCCeEEEEEEe
Confidence 4899999999999888877655 32 3456789999986
No 76
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.03 E-value=27 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.558 Sum_probs=19.5
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQYL 91 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~i 91 (521)
-.|..|+.. ......+.+..||+.||.+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 356666542 234555668899999996543
No 77
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.74 E-value=30 Score=25.76 Aligned_cols=30 Identities=20% Similarity=0.599 Sum_probs=19.4
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQYL 91 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~i 91 (521)
-.|..|+.. ......+.+..||+.||.+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 346666542 233556667899999996554
No 78
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=34.31 E-value=1.1e+02 Score=28.32 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEeCCCCCccChHHHHHHHHHHHHHhc--cCCEEE
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMK--YFDSYF 180 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID~g~~~~~s~~e~~~~l~~v~~~~e--g~p~~i 180 (521)
+.++|+|++.|+..|..++..+.. +.. ..+-++.++|+.... ++.++.++.+.+.++ |++..+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~-la~----~~~a~l~ll~v~~~~------~~~~~~l~~~~~~l~~~~~~~~~ 217 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAP-LAR----ALGLGVRVVSVHEDP------ARAEAWALEAEAYLRDHGVEASA 217 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHH-HHH----HHTCCEEEEEECSSH------HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHH-hhh----cCCCEEEEEEEcCcH------HHHHHHHHHHHHHHHHcCCceEE
Confidence 346999999999999887776654 321 235678899997531 122334555555554 777554
No 79
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.24 E-value=23 Score=27.94 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=18.2
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 345666542 22344566789999999754
No 80
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=30.22 E-value=80 Score=29.73 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.+...+++.+.+. .+..|++|||..=..+...|.+ .++.| ++.++++||-..+...++ .+..
T Consensus 23 ~~i~~~i~~~i~~~------~~~~l~lsgGstp~~~y~~L~~-------~~idw~~v~~f~~DEr~vp~~~~~---Sn~~ 86 (233)
T 3nwp_A 23 SKIASQLQEAVDAR------GKASLVVSGGSTPLKLFQLLSM-------KSIDWSDVYITLADERWVEADADA---SNER 86 (233)
T ss_dssp HHHHHHHHHHHHHH------SCEEEEECCSSTTHHHHHHHHH-------CCSCGGGEEEEESEEESSCTTSTT---CHHH
T ss_pred HHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHHHh-------cCCChhHeEEEeCeecccCCCChH---HHHH
Confidence 45566666666653 3789999999877777776643 23455 788999998664322221 2344
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++..
T Consensus 87 ~~~~~l 92 (233)
T 3nwp_A 87 LVREHL 92 (233)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
No 81
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.95 E-value=25 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=17.8
Q ss_pred ccccccCCCC--ceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTNN--GEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~~--a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+..- .....+.+..||+.||.+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 72 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 3466665531 2234556789999999654
No 82
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=29.84 E-value=16 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.638 Sum_probs=20.1
Q ss_pred CccccccCCCCceEEec-CCcccchHHHHHH
Q psy3867 61 DKLCPRCNTNNGEVVLR-LKDIYCKACLLQY 90 (521)
Q Consensus 61 ~~~C~kCk~~~a~i~~r-~~~~~Cr~CF~~~ 90 (521)
...|..|+.. .. ++| .+..+|+.||.+.
T Consensus 18 ~~rC~vcGr~-~g-~iRkfGL~~cR~cfRe~ 46 (56)
T 3iz6_N 18 SRVCRVCGNS-HG-LIRKYGLMCCRQCFRSD 46 (56)
T ss_dssp CCCCSSCCCS-CC-CTTTTSCTTHHHHHHTT
T ss_pred cceeecCCCC-cc-cccccCCcHHHHHHHHH
Confidence 3679999983 33 345 5677799999754
No 83
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=28.21 E-value=83 Score=29.50 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCC
Q psy3867 90 YLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSIS 155 (521)
Q Consensus 90 ~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~ 155 (521)
.+...+++.+.+ +.+..|++|||..=..+...|.+ .++.| ++.++++||-..+
T Consensus 20 ~i~~~i~~~i~~------~~~~~l~LsgGstp~~~y~~L~~-------~~idw~~v~~f~~DEr~vp 73 (226)
T 3lwd_A 20 TVAQALEADLAK------RERALLVVSGGSTPKPFFTSLAA-------KALPWARVDVTLADERWVT 73 (226)
T ss_dssp HHHHHHHHHHTT------SSCEEEEECCSSTTHHHHHHHHT-------SCSCGGGEEEEESEEESSC
T ss_pred HHHHHHHHHHHh------CCCEEEEEcCCCCHHHHHHHHHh-------cCCCchhEEEEEeeecccC
Confidence 344444555443 44799999999877777666642 23555 7889999987643
No 84
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.81 E-value=36 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.549 Sum_probs=18.8
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 356666653 23345566889999999653
No 85
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.67 E-value=21 Score=30.36 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=10.3
Q ss_pred EEecCCcccchHHHHH
Q psy3867 74 VVLRLKDIYCKACLLQ 89 (521)
Q Consensus 74 i~~r~~~~~Cr~CF~~ 89 (521)
...+.+..||+.||.+
T Consensus 105 f~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 105 SYTKSGMILCRNDYIR 120 (123)
T ss_dssp CBCSSSCCBCHHHHHH
T ss_pred eEEECCEEeCHHHhhh
Confidence 3444567788888754
No 86
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.50 E-value=29 Score=25.60 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=18.4
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHHHHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHHHHHh
Confidence 346666653 12234556889999999653
No 87
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=27.16 E-value=45 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=19.9
Q ss_pred cCccccccCCCCceEEecCCcccchHHHHHHH
Q psy3867 60 ADKLCPRCNTNNGEVVLRLKDIYCKACLLQYL 91 (521)
Q Consensus 60 ~~~~C~kCk~~~a~i~~r~~~~~Cr~CF~~~i 91 (521)
....|..|+...++ +| .-.+|+.||.++.
T Consensus 20 ~~nRC~~~GR~rg~--iR-kfglcR~~FRe~A 48 (61)
T 2vqe_N 20 AYTRCVRCGRARSV--YR-FFGLCRICLRELA 48 (61)
T ss_dssp CCCCCTTTCCCTTC--CT-TTSSCHHHHHHHH
T ss_pred CceeeecCCCCcee--ec-cCceeHHHHHHHH
Confidence 34779999984343 35 2339999998764
No 88
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=27.07 E-value=83 Score=29.55 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+++...+++.+.+. .+..|++|||..=..+...|.+ .++.| ++.++++||-..+...+ +.+..
T Consensus 20 ~~i~~~i~~~i~~~------~~~~l~lsgGstp~~~y~~L~~-------~~i~w~~v~~f~~DEr~vp~~~~---~Sn~~ 83 (232)
T 3lhi_A 20 DAVADALQGALDEK------GGAVLAVSGGRSPIAFFNALSQ-------KDLDWKNVGITLADERIVPTNHA---DSNTG 83 (232)
T ss_dssp HHHHHHHHHHHHHH------SCEEEEECCSSTTHHHHHHHHT-------SCCCGGGEEEEESEEESSCTTST---TCHHH
T ss_pred HHHHHHHHHHHHhC------CCEEEEEeCCCCHHHHHHHHHh-------cCCCchheEEEEeeeccCCCCCh---HHHHH
Confidence 45566667777653 3789999999876666666642 23555 78899999866432222 12344
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++..
T Consensus 84 ~~~~~l 89 (232)
T 3lhi_A 84 LVREYL 89 (232)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 565544
No 89
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.85 E-value=30 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=17.4
Q ss_pred cccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 63 LCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 63 ~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
.|..|+.. ......+.+..||+.||.+.
T Consensus 53 ~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 53 VCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred EecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 45666543 12344556789999999653
No 90
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=30 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=18.4
Q ss_pred ccccccCCCC---ceEEecCCcccchHHHHH
Q psy3867 62 KLCPRCNTNN---GEVVLRLKDIYCKACLLQ 89 (521)
Q Consensus 62 ~~C~kCk~~~---a~i~~r~~~~~Cr~CF~~ 89 (521)
-.|..|+..- .....+.+..||+.|+..
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 4577776532 234555678999999954
No 91
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.53 E-value=25 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=17.2
Q ss_pred cccccCCC-CceEEecCCcccchHHHHHH
Q psy3867 63 LCPRCNTN-NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 63 ~C~kCk~~-~a~i~~r~~~~~Cr~CF~~~ 90 (521)
.|..|+.. ......+.+..||+.||.+.
T Consensus 44 ~C~~C~~~L~~~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 44 KCQTCSVILTGEYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp BCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred CcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence 45555542 12344556789999998654
No 92
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.39 E-value=28 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=18.7
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 356666542 22345566889999999653
No 93
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=26.00 E-value=43 Score=30.85 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 108 QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 108 ~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
+.+|+|+++||....-.+.++.. |. +.++++.++.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~-L~-----~~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLY-FK-----SFFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHH-HT-----TTSSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHH-HH-----HCCCEEEEEE
Confidence 46899999999998888888865 53 3477887763
No 94
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.55 E-value=57 Score=26.77 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=25.2
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEEEe
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ID 150 (521)
-||+++.++|..|+.|+.-+++.+. +.++++.+-+++
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~-----~~gi~~~i~~~~ 41 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAK-----SKNINATIEAIA 41 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHH-----HHTCSEEEEEEC
T ss_pred eEEEEECCChHhHHHHHHHHHHHHH-----HCCCCeEEEEec
Confidence 4799999999999977776766553 245554444444
No 95
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=25.37 E-value=68 Score=29.33 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=25.5
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAI 147 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v 147 (521)
++|+|++|||....-...++.. |. +.++++.++
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~-L~-----~~g~~V~vv 34 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQV-LE-----ELDFSVDLV 34 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHH-HH-----HTTCEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHH-HH-----HCCCEEEEE
Confidence 4899999999998888888765 53 237787776
No 96
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=25.27 E-value=48 Score=30.83 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCccHHHHHHHHHHHhhhhcccc-cceeEEEEE
Q psy3867 107 PQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKR-ILFSVCAIY 148 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr-~~f~v~~v~ 148 (521)
.+.+|+|+++||....-.+.++.. |. + .++++.++.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~-L~-----~~~g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSK-LL-----DIPGLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHH-HC--------CEEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHH-Hh-----cccCCEEEEEE
Confidence 456899999999998888888765 42 3 477877763
No 97
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.12 E-value=38 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=18.6
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||...
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 346666542 22345566889999999653
No 98
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.11 E-value=52 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=19.3
Q ss_pred ccccccCCCC---ceEEecCCcccchHHHHHHH
Q psy3867 62 KLCPRCNTNN---GEVVLRLKDIYCKACLLQYL 91 (521)
Q Consensus 62 ~~C~kCk~~~---a~i~~r~~~~~Cr~CF~~~i 91 (521)
-.|..|+..- .....+.+..||+.||.+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 3466665432 24566678899999996543
No 99
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.98 E-value=43 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=18.8
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 346666543 23445566889999999653
No 100
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.84 E-value=36 Score=25.10 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=18.4
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 346666542 22344566789999999653
No 101
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=24.46 E-value=1.2e+02 Score=28.68 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.+...+++++.+. .+..|++|||..=..+...|.+.. .++.| ++.++++||-..+...++ .+..
T Consensus 25 ~~i~~~i~~a~~~~------~~~~l~LsgGstP~~~y~~L~~~~-----~~idw~~v~~f~~DEr~vp~~~~~---Sn~~ 90 (251)
T 3tx2_A 25 DRLASAITGALAER------GKAMIVLTGGGTGIALLKHLRDVA-----SGLDWTNVHVFWGDDRYVPKTDPE---RNAW 90 (251)
T ss_dssp HHHHHHHHHHHHHH------SCEEEEECCSHHHHHHHHHHHHHH-----TTSCGGGEEEEESEEESSCTTCTT---CHHH
T ss_pred HHHHHHHHHHHHhC------CCEEEEECCCchHHHHHHHHHhhc-----cCCCCceeEEEeeeeccCCCCChH---HHHH
Confidence 45666667766653 378999999976666666665411 23555 788999998764322221 2344
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++.+
T Consensus 91 ~~~~~l 96 (251)
T 3tx2_A 91 QAWEAL 96 (251)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 565544
No 102
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.35 E-value=59 Score=29.43 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
++|+|+++||....-.+.++.. |. +.++++.++.
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~-L~-----~~g~~V~vv~ 39 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIE-LK-----SKFDEVNVIA 39 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHH-HT-----TTCSEEEEEE
T ss_pred CEEEEEEeCHHHHHHHHHHHHH-HH-----HCCCEEEEEE
Confidence 6899999999998888888865 43 3478887764
No 103
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=23.99 E-value=1.2e+02 Score=28.71 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.+...+++++.+. .+..|++|||..=..+...|.+.. .++.| ++.++++||-..+...++ .+..
T Consensus 25 ~~i~~~i~~~~~~~------~~~~l~LsgGstP~~~y~~L~~~~-----~~idw~~v~~f~~DEr~vp~~~~~---Sn~~ 90 (248)
T 3oc6_A 25 DRLVDAISSAIGER------GQATIVLTGGGTGIGLLKRVRERS-----GEIDWSKVHIYWGDERFVPQDDDE---RNDK 90 (248)
T ss_dssp HHHHHHHHHHHHHH------SCEEEEECCSHHHHHHHHHHHHTG-----GGSCGGGEEEEESEEECSCTTCTT---CHHH
T ss_pred HHHHHHHHHHHHhC------CCEEEEECCCccHHHHHHHHHhhc-----cCCCcceEEEEEeeeccCCCCChH---HHHH
Confidence 45666677776653 378999999976666666664311 23455 788999998764322221 2344
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++.+
T Consensus 91 ~~~~~l 96 (248)
T 3oc6_A 91 QAREAL 96 (248)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 565544
No 104
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=23.68 E-value=1.9e+02 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=29.9
Q ss_pred CCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCC
Q psy3867 105 MRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSI 154 (521)
Q Consensus 105 i~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~ 154 (521)
+..+.+..|++|||..=..+...|.. . ...++.| ++.++++||-..
T Consensus 56 ~~~~~~~~l~LsgGsTP~~ly~~L~~-~---~~~~idw~~V~~f~~DEr~v 102 (312)
T 3e15_A 56 SKEGGHVVIGLSGGKTPIDVYKNIAL-V---KDIKIDTSKLIFFIIDERYK 102 (312)
T ss_dssp HSTTCCCEEEECCSHHHHHHHHHHTT-C---CSSCCCGGGCEEEESEEECC
T ss_pred hhhCCCEEEEEeCCCCHHHHHHHHHH-h---hccCCCccceEEEEeeeecC
Confidence 33445789999999776666665532 1 1123455 688899998654
No 105
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.67 E-value=34 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.505 Sum_probs=17.5
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQ 89 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~ 89 (521)
-.|..|+.. ......+.+..||+.||.+
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 346666542 2233446678999999953
No 106
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=23.66 E-value=55 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.7
Q ss_pred CeEEEecCCCccHHHHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
+||+|+++||....-.+.++.. |. +.++++.++.
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~-L~-----~~g~~V~vv~ 36 (181)
T 1g63_A 3 GKLLICATASINVININHYIVE-LK-----QHFDEVNILF 36 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHH-HT-----TTSSCEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHH-HH-----HCCCEEEEEE
Confidence 4799999999999988888875 53 3477887764
No 107
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=23.21 E-value=55 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCccHH-HHHHHHHHHhhhhcccccceeEEEEE
Q psy3867 107 PQDKVLVAFSGSHSSM-ALLHLLQEGMQLSSHKRILFSVCAIY 148 (521)
Q Consensus 107 ~~~kVLVa~SGG~DS~-vLL~lL~~~l~~~~~kr~~f~v~~v~ 148 (521)
.+++|+|+++||.... -.+.++.. |. +.++++.++.
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~-L~-----~~g~eV~vv~ 42 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMER-LV-----ELGAKVTPFV 42 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHH-HH-----HTTCEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHH-Hh-----hCCCEEEEEE
Confidence 4679999999997666 56777765 43 2477877764
No 108
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=22.74 E-value=75 Score=22.27 Aligned_cols=13 Identities=23% Similarity=0.904 Sum_probs=11.3
Q ss_pred CCcccchHHHHHH
Q psy3867 78 LKDIYCKACLLQY 90 (521)
Q Consensus 78 ~~~~~Cr~CF~~~ 90 (521)
.++.||--||++|
T Consensus 30 en~GFCTlCf~ey 42 (48)
T 2eqe_A 30 ENKGFCTLCFIEY 42 (48)
T ss_dssp TTTTCCHHHHHHH
T ss_pred ccCceeeeehhhh
Confidence 4689999999987
No 109
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.47 E-value=30 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=17.8
Q ss_pred ccccccCCC--CceEEecCCcccc-hHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYC-KACLLQ 89 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~C-r~CF~~ 89 (521)
-.|..|+.. ......+.+.+|| ++||..
T Consensus 33 F~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 33 FLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp SBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred EECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 346666542 2234556689999 999854
No 110
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=22.15 E-value=1.4e+02 Score=28.64 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA 167 (521)
Q Consensus 89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~ 167 (521)
+.+...+++++.+. .+..|++|||..=..+...|.+.. .++.| ++.++++||-..+...+ +.+..
T Consensus 41 ~~i~~~i~~ai~~~------~~~~l~LsgGstP~~~y~~L~~~~-----~~idw~~v~~f~~DEr~vp~~~~---~Sn~~ 106 (268)
T 3ico_A 41 KRLVGAIGAAVAAR------GQALIVLTGGGNGIALLRYLSAQA-----QQIEWSKVHLFWGDERYVPEDDD---ERNLK 106 (268)
T ss_dssp HHHHHHHHHHHHHH------SCEEEEECCSHHHHHHHHHHHHHG-----GGSCGGGEEEEESEEECSCTTCT---TCHHH
T ss_pred chhhhHhHHHHHhc------CceEEEEecCCchhHHHHHHHHHh-----hhhhheeeEEeecccccCCCCcc---hhHHH
Confidence 55666667766653 378999999976666666665411 23555 78899999876432222 12345
Q ss_pred HHHHHh
Q psy3867 168 QIATAM 173 (521)
Q Consensus 168 ~v~~~~ 173 (521)
.+++.+
T Consensus 107 ~~~~~L 112 (268)
T 3ico_A 107 QARRAL 112 (268)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 565544
No 111
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.10 E-value=36 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=18.3
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp CCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred CeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 346666553 12344566889999999643
No 112
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=21.52 E-value=97 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=25.9
Q ss_pred eEEEecCCCccHHHHHHHHHHHhhhhccccc-ceeEEEEE
Q psy3867 110 KVLVAFSGSHSSMALLHLLQEGMQLSSHKRI-LFSVCAIY 148 (521)
Q Consensus 110 kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~-~f~v~~v~ 148 (521)
||+|++|||....-.+.++.. |. +. ++++.++.
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~-L~-----~~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQA-LR-----EMPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHH-HH-----TCTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHH-HH-----hccCCEEEEEE
Confidence 799999999999888888875 53 34 67887763
No 113
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.44 E-value=53 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=18.8
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 346666542 12455566789999999653
No 114
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=20.79 E-value=19 Score=22.11 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.9
Q ss_pred HHHHHHhhhhcC
Q psy3867 510 NEMEDQIRDFLL 521 (521)
Q Consensus 510 ~~~~~~i~~fll 521 (521)
.++++.++||||
T Consensus 9 teVKqkLqefll 20 (26)
T 1tqe_X 9 TEVKQKLQEFLL 20 (26)
T ss_dssp SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357788888875
No 115
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.76 E-value=60 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=18.8
Q ss_pred ccccccCCC--CceEEecCCcccchHHHHHH
Q psy3867 62 KLCPRCNTN--NGEVVLRLKDIYCKACLLQY 90 (521)
Q Consensus 62 ~~C~kCk~~--~a~i~~r~~~~~Cr~CF~~~ 90 (521)
-.|..|+.. ......+.+..||+.||.+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 356666642 22345566789999999654
No 116
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=20.17 E-value=1.3e+02 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.9
Q ss_pred CeEEEecCCCccHHHHHH-HHHHHh
Q psy3867 109 DKVLVAFSGSHSSMALLH-LLQEGM 132 (521)
Q Consensus 109 ~kVLVa~SGG~DS~vLL~-lL~~~l 132 (521)
.+|+|+.++|..|+.|+. -+++.+
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~ 43 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENAL 43 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHH
Confidence 479999999999999888 666644
Done!