RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3867
(521 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 67/382 (17%), Positives = 117/382 (30%), Gaps = 138/382 (36%)
Query: 82 YCKAC-LLQY----LNHKFRAALGKSKMMRPQDKVLVA--FSGSHSSMALLHLLQEGMQL 134
Y LL + L + A G S+ ++ A + + S + +++ +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQ------GLVTAVAIAETDSWESFFVSVRKAI-- 300
Query: 135 SSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKL 194
+LF +I G R A +L P ++
Sbjct: 301 ----TVLF-----FI--GV--------R----CYEAYP-----------NTSLPPSILED 326
Query: 195 YTDVAE-LPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQ-NLLLQAAKKLNCTKIFTA 252
+ E +P + M +++ L+ Q + + + N L A K++
Sbjct: 327 SLENNEGVP----------SPML-SISNLTQEQ-VQDYVNKTNSHLPAGKQVE------- 367
Query: 253 ETQTDLATKIIANISL--GKGAHVPLDV-GFSDDRTGDIITLRPLR-----D-----FSS 299
ISL G V V G G +TLR + D FS
Sbjct: 368 -------------ISLVNGAKNLV---VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 300 KEVIYYNIFNDLSPVHVP--SLATLADPLASLQKAAESFVTDLQT-NFPSTVS----TVF 352
+++ + N F L PV P S L L A++ DL N V+
Sbjct: 412 RKLKFSNRF--L-PVASPFHS------HL--LVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 353 RTAD-----KLSLDLTSMNVNNTCLLCKAPLD-TRADLASSS----MGATRFSRYVSNAT 402
T D LS ++ V+ + + P+ ++ G S + T
Sbjct: 461 DTFDGSDLRVLSGSISERIVD---CIIRLPVKWETTTQFKATHILDFGPGGASG-LGVLT 516
Query: 403 REQLS----HVIISSE---SPD 417
VI++ +PD
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPD 538
Score = 55.4 bits (133), Expect = 4e-08
Identities = 77/452 (17%), Positives = 135/452 (29%), Gaps = 131/452 (28%)
Query: 105 MRPQDKVLVAFSGSHSSM-------ALLHLLQEGMQL-SSHKRILFSVCAIYI-DDGSIS 155
RP + SH S+ + QL +IL + DD +
Sbjct: 6 TRP-------LTLSHGSLEHVLLVPTASFFIAS--QLQEQFNKILPEPTEGFAADDEPTT 56
Query: 156 QVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFA----KDSE 211
+ + F Y + +EP + + V L L +F + ++
Sbjct: 57 PAELVGK-------------FLGY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 212 INKMFQTV-----TTLSSRQYLLQT--------------LRQNLLLQAAKKLNCTKIFTA 252
I+ + + TTL + L++ + L +A + ++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVA- 158
Query: 253 ETQTDLATKIIANISLGKGAHVPLDVGFSDDRT---------GDII-----TLRPL-RDF 297
I G+G D F + R GD+I TL L R
Sbjct: 159 ---------IFG----GQGN---TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 298 SSKEVIYYNIFNDLS----PVHVPSLATLAD-----PLASLQKAAESFVTDLQTNF-PST 347
E ++ N L P + P L PL + + A VT F P
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 348 VSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQLS 407
+ + + A S L + + A D+ S A ++ E
Sbjct: 263 LRSYLKGATGHSQGLVTA-------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 408 HVIISSESPDHASKVTTDVNQTVGSQDIPEKSVNG--SEDIPNQI--VNGMQYTPNEK-- 461
+ + + + + N+ V S P S++ E + + + N + P K
Sbjct: 316 NTSLPPS----ILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTN--SHLPAGKQV 366
Query: 462 -VSRTEDNEGPDNL-----QRSLCYACQYVVK 487
+S N G NL +SL + K
Sbjct: 367 EISLV--N-GAKNLVVSGPPQSLYGLNLTLRK 395
Score = 35.0 bits (80), Expect = 0.072
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 79/203 (38%)
Query: 101 KSKMMRPQDKVLVAFSGSHS----SMALLHL-----LQEGMQLSSHKRILFSVCAIYIDD 151
KSK + P D F+G HS + AL L ++ +++ R
Sbjct: 1748 KSKGLIPADAT---FAG-HSLGEYA-ALASLADVMSIESLVEVV-FYR------------ 1789
Query: 152 GSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSE 211
G QV++ + + A+ P + A E
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMI-------------AINPGRV-----AASFSQEALQ---- 1827
Query: 212 INKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQT----------DLATK 261
V + R L++ N + E Q D T
Sbjct: 1828 -----YVVERVGKRT--------GWLVEIV---N----YNVENQQYVAAGDLRALDTVTN 1867
Query: 262 IIANISLGKGAHVPLDVGFSDDR 284
++ I L K + L S +
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEE 1890
Score = 29.6 bits (66), Expect = 3.2
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 18/68 (26%)
Query: 287 DIITLRPLRDFSSKEVIYYNIFNDLSPVHVP-SLATLADPL-----ASLQKAAESFVTDL 340
D + RPL + + + VP + +A L L + E F D
Sbjct: 2 DAYSTRPL-------TLSHGSLE--HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 341 QTNFPSTV 348
+ P+T
Sbjct: 53 E---PTTP 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 46/433 (10%), Positives = 99/433 (22%), Gaps = 165/433 (38%)
Query: 188 EPDNMKL-YTDVAELPLEQFAKD----------------SEINKMFQTVTTLSSRQYLLQ 230
E + Y D+ + + F + EI+ + + +S L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 231 TLRQNLLLQAAKKLNCTKIFTAET-QTD---LATKIIANISLGKGAHVPLDVGFSDDRTG 286
TL K+ + F E + + L + I +T
Sbjct: 70 TLLS-------KQEEMVQKFVEEVLRINYKFLMSPI---------------------KTE 101
Query: 287 DIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAA-----ESFVT--- 338
R + + YN + +V L P L++A V
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLKLRQALLELRPAKNVLIDG 157
Query: 339 -----------------DLQTNFPS-----TVSTVFRTADKLSLDLTSMNVNNTCLLCKA 376
+Q + L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDP 211
Query: 377 PLDTRADLASSSMGATRFSRYVSNATREQLSHVIISSESP------------------DH 418
+R+D +S+ + ++ + +L ++ S +
Sbjct: 212 NWTSRSDHSSN-------IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 419 ASK--VTT---DVNQTVGSQDIPEKSVNGS---------------------EDIPNQIVN 452
+ K +TT V + + S++ +D+P +++
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 453 GMQYTP------NEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQE 506
P E + +G +T+ I++ L
Sbjct: 325 TN---PRRLSIIAESIR-----DGLATWDNWK----HVNCDKLTT-------IIESSLNV 365
Query: 507 KSLNEMEDQIRDF 519
E
Sbjct: 366 LEPAEYRKMFDRL 378
Score = 51.8 bits (123), Expect = 5e-07
Identities = 76/505 (15%), Positives = 156/505 (30%), Gaps = 157/505 (31%)
Query: 4 KWLTQ------IYVECM-----TVLSESSLIVVNVMDPHP---------RACSKEQVLNG 43
+ L + + ++ + T ++ + V S E VL
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-- 199
Query: 44 DEEITQNIRVVFS---FSRADKLC-PRCNTNNGEVVLR--LKDIYCKACLL-----QYLN 92
E+ Q + SR+D + ++ + LR LK + CLL Q
Sbjct: 200 --EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 93 HKFRAALGKSKMM---RPQDKVLVAF-SGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148
+ A K++ R K + F S + ++ L + K +L
Sbjct: 258 A-WNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 149 IDD-------GS---ISQV--SISE--------RKANNAQIATAMKYFDSYFTCLEQALE 188
D + +S + SI + + N ++ T ++ + L LE
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSLNV-LE 367
Query: 189 PDNMK-LYTDVAELPLEQFAKDSEINKMFQTVTTL------SSRQYLLQTLRQNLLLQAA 241
P + ++ ++ P + I ++ + S ++ L + L++
Sbjct: 368 PAEYRKMFDRLSVFP-----PSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 242 KKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKE 301
K+ + I +L K+ +L H R + D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYAL----H------------------RSIVD----- 451
Query: 302 VIYYNI-----FNDLSPVHVPS--LATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRT 354
+YNI +DL P ++ + + L +++ E T+FR
Sbjct: 452 --HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERM-------------TLFR- 494
Query: 355 ADKLSLDLTSMN--VNNTCLLCKAP---LDTRADLASSSMGATRFSRYV--SNATREQ-- 405
+ LD + + + A L+T L + Y+ ++ E+
Sbjct: 495 --MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-------KFYKPYICDNDPKYERLV 545
Query: 406 --LSHVIISSESPDHASKVTTDVNQ 428
+ + E SK TD+ +
Sbjct: 546 NAILDFLPKIEENLICSK-YTDLLR 569
Score = 48.7 bits (115), Expect = 4e-06
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 58/228 (25%)
Query: 5 WLTQIYVECMTVLSE---SSLIVVNVMDPHPRACS-----KEQVLNGDEEITQNIRVVFS 56
W I + M V+++ SL+ P S E + + E + +V
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 57 FSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAA--LGKSKMMRP------- 107
++ ++ + L D Y ++ H + + + R
Sbjct: 453 YNIPKTFD-----SDDLIPPYL-DQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 108 -QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANN 166
+ K+ + ++S ++L+ LQ QL +K YI D ER N
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQ---QLKFYKP--------YICD----NDPKYERLVNA 547
Query: 167 -----AQIATAMKYFDSYFTCLEQ-ALEPDNMKLYTDVAELPLEQFAK 208
+I + S +T L + AL ++ ++ + +Q +
Sbjct: 548 ILDFLPKIEENL--ICSKYTDLLRIALMAEDEAIFEEAH----KQVQR 589
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 46.9 bits (112), Expect = 7e-06
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVC 145
+ K A K+ + +VL+AFSG S+ L +L ++L ++ + V
Sbjct: 2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVL---LKLKNYFSL-KEVA 57
Query: 146 AIYID 150
+ +
Sbjct: 58 LAHFN 62
Score = 30.7 bits (70), Expect = 0.99
Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 231 TLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFS--DDRTGDI 288
LR L + + I TA DL + + G G G + I
Sbjct: 111 FLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLD-----GLIGFLPKEEVI 165
Query: 289 ITLRPLRDFSSKEVIYYNIFNDLSPVH 315
RPL E+ Y F L V
Sbjct: 166 R--RPLYYVKRSEIEEYAKFKGLRWVE 190
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 46.2 bits (110), Expect = 2e-05
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 91 LNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150
+ K RA + + +++ V+V SG S+ALLH+ + L ++ V A ++D
Sbjct: 1 MIDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVF---LSLRDEWKL--QVIAAHVD 55
Score = 28.1 bits (63), Expect = 9.0
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 13/91 (14%)
Query: 231 TLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFS------DDR 284
R + +K + D I+ + G + G++
Sbjct: 105 ICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSK-----GYAGIPVKRPFH 159
Query: 285 TGDIITLRPLRDFSSKEVIYYNIFNDLSPVH 315
G +I RP S E+ Y LSP
Sbjct: 160 GGYLI--RPFLAVSRAEIEAYCRQMGLSPRC 188
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 42.8 bits (101), Expect = 2e-04
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 101 KSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150
++ + ++LVAFSG S LLH L + + ++ AI++
Sbjct: 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRT----ENPGVALRAIHVH 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 39.6 bits (92), Expect = 9e-04
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 36 SKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLK--DIYCKAC 86
++E + N+ +V CP C ++V R D+ C C
Sbjct: 3 TRESIDKRAGRRGPNLNIV-------LTCPECKVYPPKIVERFSEGDVVCALC 48
Score = 31.9 bits (72), Expect = 0.29
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 459 NEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKC---LQEKSLNEMEDQ 515
E + + GP+ C C+ + G+ + C L +K + D
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK----LVDT 59
Query: 516 I---RDF 519
R F
Sbjct: 60 RSEWRTF 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.047
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 239 QAAKKLNCT-KIFTAETQTDLATKIIANI 266
QA KKL + K++ ++ LA K A +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK--ATM 46
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 32.5 bits (74), Expect = 0.33
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 386 SSSMGATRFSRYVSNATREQLSHVIISSESPDHASK 421
SMGA +++ ++++ VI+++ES A+K
Sbjct: 51 IVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAK 86
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 31.2 bits (70), Expect = 0.81
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 386 SSSMGATRFSRYVSNATREQLSHVIISSESPDHASKVTT 424
++ A + ++ +E++ VI+++ES SK
Sbjct: 85 VVTLAAGSANEILTAEDKEKIDMVILATESSVDQSKAGA 123
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus
thermophilus} PDB: 2yz5_A 2z4g_A
Length = 267
Score = 30.8 bits (70), Expect = 0.95
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 54/168 (32%)
Query: 171 TAMKYFDSYFTCLEQALE---------PDNMKLY------TDVAELPLE--QFAKDS--- 210
+ F +YF +E+A D K + + EL + ++
Sbjct: 128 DLKEVFRAYFQEVEKAARSGLFHAIGHLDLPKKFGHRLPEEALLELAEPALRAVAEAGLF 187
Query: 211 -EINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLG 269
++N T R+ + LL+ A++L + LG
Sbjct: 188 LDVN-------TAGLRRPAKEVYPAPALLRRARELGIG------------------LVLG 222
Query: 270 KGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVP 317
AH P +VGF+ + L +E Y F + SPV P
Sbjct: 223 SDAHRPEEVGFAFPEVQAL-----LAGLGFREAYY---FVEGSPVAYP 262
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus}
PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Length = 237
Score = 30.1 bits (67), Expect = 1.5
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 105 MRPQDKVLVAFS-GSHSSMALLHLLQEGMQL 134
M V V +S G S+ AL ++ +
Sbjct: 1 MVGLADVAVLYSGGKDSNYALYWAIKNRFSV 31
>3loq_A Universal stress protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Length = 294
Score = 29.6 bits (67), Expect = 2.2
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 97 AALGKSKMMRPQDKVLVAFSGSHSSMALL 125
LG + + +L+ S +S +L
Sbjct: 11 VDLGTENLYFQSNAMLLPTDLSENSFKVL 39
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 29.2 bits (65), Expect = 3.3
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 386 SSSMGATRFSRYVSNATREQLSHVIISSESPDHASK 421
+ A ++ +E + VI+ +ES SK
Sbjct: 56 IVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESK 91
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 27.4 bits (61), Expect = 5.2
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 268 LGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSP 313
+ K PL +TGD+I L ++ V Y ++ LS
Sbjct: 77 VVKKQTCPL-------QTGDVIYLVYRKNEPEHNVAY--LYESLSE 113
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 26.9 bits (60), Expect = 7.8
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 255 QTDLATKIIANIS---LGKGAHVPLDVGFS-DDRTGDIITLRPL 294
+DLA + I+ GKG P F + TG++ L
Sbjct: 35 HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSIL 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.367
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,270,182
Number of extensions: 418313
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 24
Length of query: 521
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 423
Effective length of database: 3,965,535
Effective search space: 1677421305
Effective search space used: 1677421305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)