RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3867
(521 letters)
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 43.4 bits (101), Expect = 2e-05
Identities = 16/94 (17%), Positives = 32/94 (34%)
Query: 89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148
+ K A K+ + +VL+AFSG S+ L +L + S K + +
Sbjct: 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64
Query: 149 IDDGSISQVSISERKANNAQIATAMKYFDSYFTC 182
+ + + + A + + D
Sbjct: 65 LRESAERDEEFCKEFAKERNMKIFVGKEDVRAFA 98
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 37.8 bits (86), Expect = 0.001
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 108 QDKVLVAFSGSHSSMALLHLLQE 130
++KV++A+SG + +L L E
Sbjct: 1 KEKVVLAYSGGLDTSVILKWLCE 23
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 37.8 bits (86), Expect = 0.002
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 103 KMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYID 150
+ + ++LVAFSG S LLH L + + ++ AI++
Sbjct: 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQ----WRTENPGVALRAIHVH 51
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 36.3 bits (82), Expect = 0.003
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 110 KVLVAFSGSHSSMALLHLLQE 130
K+++A+SG + +L L+E
Sbjct: 2 KIVLAYSGGLDTSIILKWLKE 22
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 33.1 bits (74), Expect = 0.060
Identities = 21/207 (10%), Positives = 57/207 (27%), Gaps = 28/207 (13%)
Query: 109 DKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168
D ++ +S S +LHL + +++D
Sbjct: 27 DNPVMLYSIGKDSAVMLHLA-----RKAFFPGKLPFPVMHVD------------------ 63
Query: 169 IATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYL 228
T K+ + Y + E + + + + + + +
Sbjct: 64 --TRWKFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQA 121
Query: 229 LQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDI 288
L + A++ + +K + + + G + G+
Sbjct: 122 LDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNG--NVNKGES 179
Query: 289 ITLRPLRDFSSKEVIYYNIFNDLSPVH 315
I + PL +++ ++ Y + P+
Sbjct: 180 IRVFPLSNWTELDIWQYIYLEGI-PIV 205
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.1 bits (69), Expect = 0.22
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 103 KMMRPQDKVLVAFSGSHSSMALLHLLQE 130
K + ++ +AFSG + A L +++
Sbjct: 5 KHLPVGQRIGIAFSGGLDTSAALLWMRQ 32
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 30.7 bits (68), Expect = 0.31
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 108 QDKVLVAFSGSHSSMALLHLLQE 130
KV+V SG S +L +
Sbjct: 4 GGKVMVLLSGGIDSPVAAYLTMK 26
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 29.2 bits (64), Expect = 1.3
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 80 DIYCKACLLQYLN----HKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQL 134
+ K ++L K R AL K+ + +L SG+H+ G++
Sbjct: 35 RLLLK---AEHLQKTGSFKARGALSKALALENPKGLLAVSSGNHAQGVAYAAQVLGVKA 90
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 26.9 bits (58), Expect = 3.1
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 33 RACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLK--DIYCKACLLQY 90
R ++E + +E+ + + S + V K + CLL
Sbjct: 14 RKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73
Query: 91 LNHKF----------RAALGKSKMMRPQDKVLVAFSGSHS 120
+ + G+ +P K+ V SG S
Sbjct: 74 YCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFRSGPSS 113
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 27.6 bits (60), Expect = 3.5
Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 25/151 (16%)
Query: 110 KVLVAFSGSH-SSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQ 168
+ +V FSG S+ L+ LQ+ V I D G + +
Sbjct: 3 RAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRA----------E 42
Query: 169 IATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYL 228
I A + + L+ + + D + N T + R L
Sbjct: 43 IEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNIL 102
Query: 229 LQTLRQNLLLQAAKKLNCTKIFTAETQTDLA 259
TL A ++ + T +TD +
Sbjct: 103 FLTLASIY----AYQVGAEAVITGVCETDFS 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.367
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,728,045
Number of extensions: 75144
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 14
Length of query: 521
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 432
Effective length of database: 1,185,626
Effective search space: 512190432
Effective search space used: 512190432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)