Query psy3868
Match_columns 69
No_of_seqs 130 out of 1071
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:28:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 4E-21 1.4E-25 129.7 8.2 65 3-67 196-260 (405)
2 4b4t_I 26S protease regulatory 99.8 3.2E-20 1.1E-24 126.2 7.8 65 3-67 230-294 (437)
3 4b4t_M 26S protease regulatory 99.8 4.9E-20 1.7E-24 125.2 6.9 65 3-67 229-293 (434)
4 4b4t_L 26S protease subunit RP 99.8 1E-19 3.6E-24 123.7 8.0 65 3-67 229-293 (437)
5 4b4t_H 26S protease regulatory 99.8 1.5E-19 5.3E-24 123.7 8.3 65 3-67 257-321 (467)
6 4b4t_K 26S protease regulatory 99.8 2.8E-19 9.6E-24 121.3 7.5 65 3-67 220-284 (428)
7 3cf2_A TER ATPase, transitiona 99.8 1.7E-19 5.8E-24 129.5 6.3 64 3-66 525-588 (806)
8 3cf2_A TER ATPase, transitiona 99.7 3.3E-18 1.1E-22 122.8 7.5 65 3-67 252-316 (806)
9 3eie_A Vacuolar protein sortin 99.6 4.9E-15 1.7E-19 96.0 8.0 64 3-66 65-128 (322)
10 3t15_A Ribulose bisphosphate c 99.6 3.9E-15 1.3E-19 95.9 5.8 64 3-66 50-117 (293)
11 1xwi_A SKD1 protein; VPS4B, AA 99.6 6.6E-15 2.3E-19 95.9 6.9 65 3-67 59-124 (322)
12 2qp9_X Vacuolar protein sortin 99.5 2.1E-14 7.2E-19 94.6 7.3 64 3-66 98-161 (355)
13 2ce7_A Cell division protein F 99.5 6.2E-14 2.1E-18 96.1 8.1 64 3-66 63-126 (476)
14 3cf0_A Transitional endoplasmi 99.5 2.4E-14 8.2E-19 92.2 4.8 63 3-65 63-125 (301)
15 3hu3_A Transitional endoplasmi 99.5 1.5E-13 5.1E-18 94.2 7.6 64 3-66 252-315 (489)
16 2c9o_A RUVB-like 1; hexameric 99.5 4E-14 1.4E-18 95.7 4.6 64 3-67 77-145 (456)
17 2zan_A Vacuolar protein sortin 99.5 5E-14 1.7E-18 95.1 4.8 65 3-67 181-246 (444)
18 3d8b_A Fidgetin-like protein 1 99.4 3.3E-13 1.1E-17 88.7 7.2 64 3-66 131-194 (357)
19 3vfd_A Spastin; ATPase, microt 99.4 2.1E-13 7.3E-18 90.2 6.3 64 3-66 162-225 (389)
20 3h4m_A Proteasome-activating n 99.4 5.1E-13 1.8E-17 84.3 7.5 64 3-66 65-128 (285)
21 3b9p_A CG5977-PA, isoform A; A 99.4 8.3E-13 2.8E-17 83.9 7.5 64 3-66 68-131 (297)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.4 6.9E-13 2.3E-17 82.5 6.9 63 3-65 53-115 (262)
23 1ypw_A Transitional endoplasmi 99.4 1.4E-13 4.9E-18 98.5 2.4 64 3-66 525-588 (806)
24 1lv7_A FTSH; alpha/beta domain 99.4 1.4E-12 4.7E-17 81.7 6.5 64 3-66 59-122 (257)
25 2x8a_A Nuclear valosin-contain 99.3 2.1E-12 7E-17 82.7 6.5 63 3-65 58-120 (274)
26 2dhr_A FTSH; AAA+ protein, hex 99.3 4.8E-12 1.6E-16 87.2 5.4 63 3-65 78-140 (499)
27 2r62_A Cell division protease 99.3 7.4E-13 2.5E-17 83.1 0.9 62 3-64 58-119 (268)
28 1ypw_A Transitional endoplasmi 99.2 3.9E-11 1.3E-15 86.1 7.6 64 3-66 252-315 (806)
29 1ixz_A ATP-dependent metallopr 99.1 1.9E-10 6.7E-15 71.7 6.5 63 3-65 63-125 (254)
30 3hws_A ATP-dependent CLP prote 99.1 6.1E-11 2.1E-15 77.6 3.9 65 3-67 65-135 (363)
31 1iy2_A ATP-dependent metallopr 99.0 7.5E-10 2.6E-14 70.1 6.9 63 3-65 87-149 (278)
32 3syl_A Protein CBBX; photosynt 99.0 1.4E-09 4.7E-14 69.1 7.5 60 3-65 81-147 (309)
33 1d2n_A N-ethylmaleimide-sensit 98.9 2.7E-09 9.2E-14 67.2 6.7 60 3-65 78-141 (272)
34 2p65_A Hypothetical protein PF 98.7 6.1E-08 2.1E-12 56.6 7.7 63 3-65 57-132 (187)
35 1jbk_A CLPB protein; beta barr 98.7 5.8E-08 2E-12 56.6 6.9 62 3-64 57-131 (195)
36 1qvr_A CLPB protein; coiled co 98.7 4.2E-08 1.5E-12 70.5 6.5 63 3-65 205-280 (854)
37 1um8_A ATP-dependent CLP prote 98.6 5E-08 1.7E-12 63.9 5.4 63 3-65 86-154 (376)
38 1ofh_A ATP-dependent HSL prote 98.6 4.6E-08 1.6E-12 61.7 4.5 62 3-64 64-132 (310)
39 1r6b_X CLPA protein; AAA+, N-t 98.6 1.1E-07 3.8E-12 67.2 6.8 64 3-66 221-296 (758)
40 3cmw_A Protein RECA, recombina 98.5 4.8E-08 1.7E-12 74.8 4.0 63 3-65 1096-1177(1706)
41 3m6a_A ATP-dependent protease 98.5 3.9E-08 1.4E-12 67.9 3.0 62 3-65 122-192 (543)
42 1l8q_A Chromosomal replication 98.3 1.5E-06 5E-11 55.8 5.1 60 3-63 51-113 (324)
43 3uk6_A RUVB-like 2; hexameric 98.2 1.3E-06 4.3E-11 56.5 4.8 30 3-32 84-115 (368)
44 3pvs_A Replication-associated 98.2 2.4E-06 8.2E-11 58.0 6.1 55 3-64 64-122 (447)
45 1sxj_A Activator 1 95 kDa subu 98.2 2.2E-07 7.5E-12 63.6 0.1 62 3-64 91-164 (516)
46 3te6_A Regulatory protein SIR3 98.1 2.5E-06 8.7E-11 56.0 4.6 59 3-61 59-145 (318)
47 1g41_A Heat shock protein HSLU 98.1 1.4E-06 4.6E-11 59.5 3.3 57 3-63 64-122 (444)
48 2z4s_A Chromosomal replication 98.1 4.5E-06 1.5E-10 56.3 4.6 61 3-63 144-209 (440)
49 3u61_B DNA polymerase accessor 98.0 6.4E-06 2.2E-10 52.6 4.8 52 3-61 62-118 (324)
50 1r6b_X CLPA protein; AAA+, N-t 98.0 8.2E-06 2.8E-10 57.7 4.7 58 3-62 502-571 (758)
51 3pfi_A Holliday junction ATP-d 97.9 1.8E-05 6.2E-10 50.7 5.5 52 3-62 69-120 (338)
52 3co5_A Putative two-component 97.9 2.4E-06 8.1E-11 49.4 1.1 50 3-63 41-90 (143)
53 3pxg_A Negative regulator of g 97.9 8.1E-06 2.8E-10 55.4 3.7 50 3-55 215-274 (468)
54 3n70_A Transport activator; si 97.9 5.2E-06 1.8E-10 48.0 2.4 51 3-63 38-91 (145)
55 3pxi_A Negative regulator of g 97.9 1.9E-05 6.6E-10 56.0 5.4 56 3-62 535-593 (758)
56 3pxi_A Negative regulator of g 97.9 9.1E-06 3.1E-10 57.7 3.7 50 3-55 215-274 (758)
57 2v1u_A Cell division control p 97.7 3.2E-05 1.1E-09 49.6 4.3 61 3-63 58-145 (387)
58 1hqc_A RUVB; extended AAA-ATPa 97.7 7.4E-05 2.5E-09 47.4 5.4 53 3-62 52-104 (324)
59 2qby_B CDC6 homolog 3, cell di 97.7 4.7E-05 1.6E-09 49.1 4.5 61 3-64 59-149 (384)
60 2qby_A CDC6 homolog 1, cell di 97.6 0.00014 4.7E-09 46.5 6.1 62 3-64 59-144 (386)
61 1qvr_A CLPB protein; coiled co 97.4 0.00013 4.6E-09 52.5 4.5 58 3-62 602-674 (854)
62 4fcw_A Chaperone protein CLPB; 97.4 9.3E-05 3.2E-09 46.7 3.1 58 3-62 61-133 (311)
63 1fnn_A CDC6P, cell division co 97.1 0.0023 7.8E-08 41.1 7.0 58 3-60 58-137 (389)
64 1in4_A RUVB, holliday junction 97.1 0.0012 4E-08 42.8 5.6 52 3-62 65-116 (334)
65 2bjv_A PSP operon transcriptio 97.1 0.0014 4.8E-08 40.6 5.7 57 3-62 43-114 (265)
66 2chg_A Replication factor C sm 97.1 0.0018 6.1E-08 38.0 5.8 54 3-62 52-116 (226)
67 1ojl_A Transcriptional regulat 96.9 0.00022 7.6E-09 45.8 0.8 56 3-62 39-110 (304)
68 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0014 4.9E-08 43.4 4.4 61 3-65 137-199 (331)
69 1sxj_B Activator 1 37 kDa subu 96.8 0.0015 5.2E-08 40.9 4.3 54 3-62 56-121 (323)
70 3bos_A Putative DNA replicatio 96.8 0.0013 4.3E-08 39.5 3.7 52 3-64 66-120 (242)
71 2w58_A DNAI, primosome compone 96.8 0.0011 3.9E-08 39.4 3.2 57 3-61 68-128 (202)
72 2kjq_A DNAA-related protein; s 96.7 0.0015 5.1E-08 38.0 3.3 45 3-62 50-97 (149)
73 3cmu_A Protein RECA, recombina 96.6 0.0033 1.1E-07 49.5 5.6 62 3-64 1441-1521(2050)
74 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.00047 1.6E-08 47.5 0.2 59 3-62 55-123 (500)
75 1njg_A DNA polymerase III subu 96.5 0.0047 1.6E-07 36.5 4.5 29 33-61 107-139 (250)
76 1sxj_D Activator 1 41 kDa subu 96.5 0.0023 7.8E-08 40.7 3.3 55 3-63 72-148 (353)
77 3ec2_A DNA replication protein 96.3 0.0021 7.3E-08 37.6 2.1 57 3-61 52-113 (180)
78 2chq_A Replication factor C sm 96.1 0.002 6.8E-08 40.3 1.6 58 3-62 52-116 (319)
79 1iqp_A RFCS; clamp loader, ext 96.1 0.012 4.3E-07 36.8 5.2 54 3-62 60-124 (327)
80 2r44_A Uncharacterized protein 95.8 0.0058 2E-07 39.0 2.8 56 3-63 60-124 (331)
81 2gno_A DNA polymerase III, gam 95.7 0.03 1E-06 36.1 5.9 55 3-62 32-96 (305)
82 1g8p_A Magnesium-chelatase 38 95.6 0.011 3.8E-07 37.5 3.5 16 48-63 144-159 (350)
83 1jr3_A DNA polymerase III subu 95.6 0.0098 3.3E-07 38.0 3.2 28 35-62 102-133 (373)
84 1w5s_A Origin recognition comp 95.5 0.026 9E-07 36.4 5.1 60 3-62 66-152 (412)
85 2fna_A Conserved hypothetical 95.5 0.032 1.1E-06 35.1 5.3 26 37-62 124-151 (357)
86 2qgz_A Helicase loader, putati 95.4 0.0085 2.9E-07 38.5 2.4 57 3-61 166-227 (308)
87 1a5t_A Delta prime, HOLB; zinc 95.1 0.056 1.9E-06 34.8 5.7 57 3-62 38-122 (334)
88 2r2a_A Uncharacterized protein 94.8 0.013 4.3E-07 35.8 1.9 19 46-64 85-103 (199)
89 4akg_A Glutathione S-transfera 94.7 0.04 1.4E-06 44.6 4.8 52 3-61 659-710 (2695)
90 2qen_A Walker-type ATPase; unk 94.3 0.23 7.7E-06 31.1 6.9 16 47-62 127-142 (350)
91 1sxj_C Activator 1 40 kDa subu 93.9 0.13 4.5E-06 32.9 5.3 54 3-62 60-124 (340)
92 1ny5_A Transcriptional regulat 93.8 0.16 5.3E-06 33.5 5.5 56 3-62 174-245 (387)
93 4akg_A Glutathione S-transfera 92.3 0.23 7.8E-06 40.5 5.3 56 3-64 1281-1352(2695)
94 1sxj_E Activator 1 40 kDa subu 92.2 0.33 1.1E-05 30.8 5.2 14 48-61 134-147 (354)
95 3dzd_A Transcriptional regulat 91.6 0.21 7.2E-06 32.8 3.9 54 3-62 166-236 (368)
96 3f9v_A Minichromosome maintena 90.2 0.011 3.9E-07 41.3 -3.4 58 3-63 341-406 (595)
97 3cmu_A Protein RECA, recombina 89.7 0.25 8.6E-06 39.4 3.3 60 3-62 746-824 (2050)
98 1xp8_A RECA protein, recombina 86.4 2.2 7.5E-05 28.1 5.9 20 43-62 147-166 (366)
99 2zr9_A Protein RECA, recombina 86.1 2.7 9.3E-05 27.4 6.1 28 35-62 126-153 (349)
100 1g41_A Heat shock protein HSLU 85.2 1.3 4.4E-05 30.2 4.3 15 50-64 252-266 (444)
101 1qhx_A CPT, protein (chloramph 84.6 3.8 0.00013 23.1 6.6 23 3-25 17-39 (178)
102 2fz4_A DNA repair protein RAD2 84.5 4.4 0.00015 24.6 6.2 15 48-62 192-206 (237)
103 3vkg_A Dynein heavy chain, cyt 83.5 1.4 4.9E-05 36.7 4.5 52 3-61 618-669 (3245)
104 3cmw_A Protein RECA, recombina 82.8 1.5 5.1E-05 34.6 4.2 42 24-65 1485-1526(1706)
105 3imk_A Putative molybdenum car 82.3 5.9 0.0002 23.6 5.9 45 2-52 88-132 (158)
106 2cvh_A DNA repair and recombin 81.1 4.2 0.00014 23.6 5.0 15 48-62 105-119 (220)
107 3guv_A Site-specific recombina 75.4 8.1 0.00028 22.1 5.0 58 6-63 31-90 (167)
108 3hr8_A Protein RECA; alpha and 75.3 12 0.00041 24.6 6.4 29 34-62 125-153 (356)
109 1uhe_A Aspartate 1-decarboxyla 75.2 2.2 7.5E-05 23.5 2.3 21 42-62 70-90 (97)
110 1vc3_B L-aspartate-alpha-decar 75.1 1.8 6.3E-05 23.8 2.0 21 42-62 72-92 (96)
111 3cg6_A Growth arrest and DNA-d 74.9 3.1 0.00011 24.5 3.1 28 4-31 66-93 (146)
112 3plx_B Aspartate 1-decarboxyla 74.1 2.4 8.3E-05 23.6 2.3 20 42-61 71-90 (102)
113 2w0m_A SSO2452; RECA, SSPF, un 72.3 5.3 0.00018 23.2 3.8 26 36-61 109-136 (235)
114 1u94_A RECA protein, recombina 70.9 19 0.00065 23.5 7.2 27 36-62 128-155 (356)
115 3ffm_A Growth arrest and DNA-d 69.3 4.5 0.00015 24.3 2.9 29 3-31 86-114 (167)
116 2z43_A DNA repair and recombin 68.9 9.5 0.00032 24.2 4.6 26 37-62 191-217 (324)
117 1n0w_A DNA repair protein RAD5 67.2 7.7 0.00026 22.8 3.7 26 38-63 109-134 (243)
118 2z5b_A Protein YPL144W, DMP1; 67.1 7.2 0.00024 23.1 3.4 25 2-26 100-124 (151)
119 1v5w_A DMC1, meiotic recombina 65.4 21 0.00073 22.8 5.8 26 37-62 206-233 (343)
120 2p5t_B PEZT; postsegregational 64.5 21 0.00072 21.6 6.7 23 3-25 46-68 (253)
121 2b8t_A Thymidine kinase; deoxy 63.0 6.8 0.00023 24.0 3.0 24 38-61 75-102 (223)
122 1ye8_A Protein THEP1, hypothet 62.6 11 0.00036 22.0 3.7 14 45-58 96-109 (178)
123 1pqh_A Aspartate 1-decarboxyla 62.1 4.7 0.00016 23.6 2.0 21 42-62 113-133 (143)
124 1svm_A Large T antigen; AAA+ f 61.3 11 0.00037 25.0 3.9 48 3-62 183-230 (377)
125 1zuh_A Shikimate kinase; alpha 60.9 5.4 0.00018 22.4 2.1 18 3-20 21-38 (168)
126 2c45_A Aspartate 1-decarboxyla 59.4 5 0.00017 23.4 1.7 21 42-62 96-116 (139)
127 1via_A Shikimate kinase; struc 59.4 5.9 0.0002 22.4 2.1 18 3-20 18-35 (175)
128 3fdi_A Uncharacterized protein 59.2 7 0.00024 23.2 2.5 18 2-19 19-36 (201)
129 4dkx_A RAS-related protein RAB 58.8 9.7 0.00033 22.8 3.1 33 3-44 138-170 (216)
130 3trf_A Shikimate kinase, SK; a 58.2 6.4 0.00022 22.3 2.1 27 3-31 19-45 (185)
131 4ag6_A VIRB4 ATPase, type IV s 58.0 12 0.00042 24.1 3.7 46 15-62 223-276 (392)
132 3bvp_A INT, TP901-1 integrase; 56.9 19 0.00066 19.9 4.0 31 34-64 57-87 (138)
133 3b6e_A Interferon-induced heli 56.7 3.9 0.00013 23.6 1.0 15 48-62 162-176 (216)
134 1iv0_A Hypothetical protein; r 56.5 12 0.00042 20.1 3.0 50 7-56 44-93 (98)
135 2iyv_A Shikimate kinase, SK; t 54.5 7.9 0.00027 21.9 2.1 18 3-20 16-33 (184)
136 2ehv_A Hypothetical protein PH 54.3 15 0.00051 21.6 3.4 25 37-61 124-148 (251)
137 1x6v_B Bifunctional 3'-phospho 53.6 58 0.002 23.2 6.8 42 3-44 66-117 (630)
138 2i3b_A HCR-ntpase, human cance 52.9 3.4 0.00012 24.5 0.3 15 46-60 103-117 (189)
139 3k1j_A LON protease, ATP-depen 52.7 8.2 0.00028 26.7 2.3 14 48-61 201-214 (604)
140 3oiy_A Reverse gyrase helicase 52.5 6.9 0.00024 25.2 1.8 21 41-61 132-152 (414)
141 3hdt_A Putative kinase; struct 52.3 9.6 0.00033 23.2 2.3 18 2-19 27-44 (223)
142 2grj_A Dephospho-COA kinase; T 51.6 17 0.00058 21.5 3.3 18 3-20 26-43 (192)
143 3p9x_A Phosphoribosylglycinami 50.8 40 0.0014 20.6 5.6 51 6-61 44-94 (211)
144 2dr3_A UPF0273 protein PH0284; 50.7 21 0.00071 20.9 3.6 25 37-61 117-141 (247)
145 1cr0_A DNA primase/helicase; R 50.1 17 0.00057 22.4 3.2 18 44-61 143-160 (296)
146 3vaa_A Shikimate kinase, SK; s 49.8 10 0.00035 22.0 2.1 19 3-21 39-57 (199)
147 3kcq_A Phosphoribosylglycinami 49.5 35 0.0012 20.9 4.5 44 7-60 51-94 (215)
148 4f1h_A Tyrosyl-DNA phosphodies 49.0 17 0.00059 20.5 3.0 25 34-58 20-44 (250)
149 1nu0_A Hypothetical protein YQ 48.8 35 0.0012 19.4 5.3 51 7-57 46-97 (138)
150 1vec_A ATP-dependent RNA helic 48.7 5.9 0.0002 22.8 0.9 15 48-62 146-160 (206)
151 1kag_A SKI, shikimate kinase I 47.4 33 0.0011 18.9 4.0 23 3-27 18-40 (173)
152 2ki0_A DS119; beta-alpha-beta, 47.0 18 0.0006 15.8 2.1 20 28-47 8-27 (36)
153 2orw_A Thymidine kinase; TMTK, 46.1 8.4 0.00029 22.5 1.3 14 48-61 76-89 (184)
154 2p10_A MLL9387 protein; putati 46.0 38 0.0013 21.9 4.5 48 6-54 176-231 (286)
155 4gz1_A Tyrosyl-DNA phosphodies 45.7 20 0.00069 20.6 3.0 25 34-58 26-50 (256)
156 2r6a_A DNAB helicase, replicat 45.7 63 0.0022 21.4 6.3 18 46-63 311-328 (454)
157 2ze6_A Isopentenyl transferase 45.7 16 0.00054 22.3 2.6 20 3-22 15-34 (253)
158 3a4m_A L-seryl-tRNA(SEC) kinas 45.6 49 0.0017 20.0 6.8 26 3-28 18-46 (260)
159 1e6c_A Shikimate kinase; phosp 45.5 13 0.00046 20.6 2.1 18 3-20 16-33 (173)
160 3auy_A DNA double-strand break 45.3 19 0.00065 23.2 3.0 15 46-60 302-317 (371)
161 3iuy_A Probable ATP-dependent 44.9 6.7 0.00023 23.1 0.7 14 49-62 168-181 (228)
162 2kg4_A Growth arrest and DNA-d 44.8 16 0.00053 21.9 2.3 28 4-31 76-103 (165)
163 2gxq_A Heat resistant RNA depe 44.7 6.6 0.00022 22.6 0.7 15 48-62 144-158 (207)
164 2v1x_A ATP-dependent DNA helic 44.7 43 0.0015 23.2 4.8 16 47-62 164-179 (591)
165 2q5c_A NTRC family transcripti 44.6 27 0.00094 20.7 3.5 35 2-46 148-182 (196)
166 3kb2_A SPBC2 prophage-derived 43.9 19 0.00065 19.8 2.6 19 3-21 15-33 (173)
167 1tue_A Replication protein E1; 43.9 7.3 0.00025 24.1 0.8 15 3-17 72-86 (212)
168 2bwj_A Adenylate kinase 5; pho 43.8 42 0.0014 18.8 4.2 18 3-20 26-43 (199)
169 1qde_A EIF4A, translation init 43.4 7.2 0.00025 22.8 0.7 15 48-62 155-169 (224)
170 4fva_A 5'-tyrosyl-DNA phosphod 43.3 23 0.00079 20.4 3.0 26 33-58 29-54 (256)
171 2pt5_A Shikimate kinase, SK; a 43.2 16 0.00053 20.2 2.1 18 3-20 14-31 (168)
172 3teb_A Endonuclease/exonucleas 43.1 25 0.00086 20.6 3.2 29 33-61 19-47 (266)
173 1q0u_A Bstdead; DEAD protein, 43.1 7.4 0.00025 22.8 0.8 15 48-62 150-164 (219)
174 3kta_B Chromosome segregation 42.9 37 0.0013 19.7 3.8 14 48-61 86-99 (173)
175 1t6n_A Probable ATP-dependent 42.7 7.6 0.00026 22.7 0.7 15 48-62 158-172 (220)
176 1e9r_A Conjugal transfer prote 42.6 28 0.00096 22.7 3.5 16 47-62 278-293 (437)
177 4a74_A DNA repair and recombin 42.3 21 0.00071 20.6 2.6 16 46-61 123-138 (231)
178 3rjz_A N-type ATP pyrophosphat 42.2 43 0.0015 20.8 4.2 19 5-23 54-72 (237)
179 2pez_A Bifunctional 3'-phospho 41.8 29 0.00099 19.5 3.2 23 3-25 19-44 (179)
180 1w2w_B 5-methylthioribose-1-ph 41.1 30 0.001 20.8 3.3 27 1-27 72-98 (191)
181 3dkp_A Probable ATP-dependent 41.0 8.3 0.00028 22.9 0.7 14 49-62 176-189 (245)
182 1hi9_A Dciaa, dipeptide transp 41.0 49 0.0017 21.2 4.4 23 4-26 135-157 (274)
183 1wj5_A Hypothetical protein (r 40.9 7.2 0.00025 22.2 0.4 36 11-46 50-85 (120)
184 3iij_A Coilin-interacting nucl 40.6 18 0.00061 20.4 2.1 19 3-21 25-43 (180)
185 3t5g_A GTP-binding protein RHE 40.3 46 0.0016 18.2 4.5 32 4-44 132-163 (181)
186 3ake_A Cytidylate kinase; CMP 40.1 24 0.00082 20.1 2.7 18 3-20 16-33 (208)
187 3bor_A Human initiation factor 40.0 8.8 0.0003 22.9 0.7 15 48-62 173-187 (237)
188 3av3_A Phosphoribosylglycinami 39.8 61 0.0021 19.5 6.0 50 6-60 45-94 (212)
189 2pl3_A Probable ATP-dependent 39.8 9 0.00031 22.6 0.8 14 48-61 171-184 (236)
190 1kao_A RAP2A; GTP-binding prot 39.7 43 0.0015 17.8 4.8 17 6-22 131-147 (167)
191 3nea_A PTH, peptidyl-tRNA hydr 39.6 22 0.00075 21.9 2.5 59 3-61 45-120 (207)
192 3tif_A Uncharacterized ABC tra 39.5 24 0.00082 21.4 2.7 17 41-57 156-172 (235)
193 3i42_A Response regulator rece 39.4 28 0.00096 17.8 2.7 17 40-56 39-55 (127)
194 3f6p_A Transcriptional regulat 39.3 26 0.0009 17.9 2.6 16 40-55 38-53 (120)
195 2oxc_A Probable ATP-dependent 39.1 9.3 0.00032 22.6 0.7 14 49-62 167-180 (230)
196 1vch_A Phosphoribosyltransfera 39.0 6.9 0.00024 22.5 0.1 18 3-20 64-81 (175)
197 1rif_A DAR protein, DNA helica 38.8 14 0.00048 22.6 1.5 13 50-62 227-239 (282)
198 4a1f_A DNAB helicase, replicat 38.8 50 0.0017 21.5 4.3 30 33-62 139-170 (338)
199 1eg5_A Aminotransferase; PLP-d 38.8 28 0.00095 21.5 3.0 25 37-61 158-183 (384)
200 3g13_A Putative conjugative tr 38.5 35 0.0012 19.3 3.2 29 35-63 62-90 (169)
201 3lte_A Response regulator; str 38.5 29 0.001 17.8 2.7 16 40-55 42-57 (132)
202 2c95_A Adenylate kinase 1; tra 38.4 20 0.00069 20.2 2.1 18 3-20 23-40 (196)
203 3fe2_A Probable ATP-dependent 38.4 9.7 0.00033 22.7 0.8 15 48-62 176-190 (242)
204 4hoy_A PTH, peptidyl-tRNA hydr 38.4 18 0.00062 22.0 2.0 61 2-62 25-102 (193)
205 2cdn_A Adenylate kinase; phosp 38.4 20 0.00068 20.6 2.1 18 3-20 34-51 (201)
206 3oes_A GTPase rhebl1; small GT 38.3 54 0.0019 18.5 4.5 32 4-44 150-181 (201)
207 3v2i_A PTH, peptidyl-tRNA hydr 38.3 23 0.0008 22.0 2.5 60 2-61 44-120 (222)
208 1wrb_A DJVLGB; RNA helicase, D 38.2 9.7 0.00033 22.8 0.7 13 49-61 175-187 (253)
209 2wji_A Ferrous iron transport 37.9 26 0.0009 19.2 2.5 16 7-22 131-146 (165)
210 3t6k_A Response regulator rece 37.9 30 0.001 18.2 2.7 16 40-55 40-55 (136)
211 3auf_A Glycinamide ribonucleot 37.8 70 0.0024 19.6 5.9 50 6-60 64-113 (229)
212 2pcj_A ABC transporter, lipopr 37.3 24 0.00084 21.1 2.5 17 41-57 151-167 (224)
213 3llm_A ATP-dependent RNA helic 37.1 25 0.00084 20.9 2.4 14 47-60 175-188 (235)
214 1ji0_A ABC transporter; ATP bi 37.1 27 0.00093 21.2 2.7 14 44-57 153-166 (240)
215 1tev_A UMP-CMP kinase; ploop, 37.0 22 0.00075 19.9 2.1 17 3-19 17-33 (196)
216 3gl9_A Response regulator; bet 36.9 27 0.00093 18.0 2.4 16 40-55 38-53 (122)
217 2rhm_A Putative kinase; P-loop 36.9 22 0.00075 20.0 2.1 18 3-20 19-36 (193)
218 3nhm_A Response regulator; pro 36.9 33 0.0011 17.7 2.7 16 40-55 39-54 (133)
219 1nlf_A Regulatory protein REPA 36.8 41 0.0014 20.5 3.5 15 48-62 133-147 (279)
220 3oug_A Aspartate 1-decarboxyla 36.7 5.2 0.00018 22.6 -0.6 14 44-58 101-114 (114)
221 4fyj_A PTH, peptidyl-tRNA hydr 36.7 22 0.00076 21.7 2.2 60 2-61 31-107 (199)
222 3grc_A Sensor protein, kinase; 36.6 36 0.0012 17.7 2.9 16 40-55 42-57 (140)
223 3rim_A Transketolase, TK; TPP, 36.5 1.1E+02 0.0036 22.1 5.9 39 9-56 226-267 (700)
224 1wd5_A Hypothetical protein TT 36.4 23 0.00078 21.0 2.2 17 3-19 35-51 (208)
225 3nwj_A ATSK2; P loop, shikimat 36.2 53 0.0018 20.2 3.9 18 3-20 62-79 (250)
226 1w1w_A Structural maintenance 36.1 47 0.0016 21.8 3.8 15 47-61 354-368 (430)
227 2nq2_C Hypothetical ABC transp 36.0 30 0.001 21.2 2.8 16 43-58 141-156 (253)
228 3l1w_A Uncharacterized protein 35.8 35 0.0012 20.0 3.0 25 35-59 22-46 (257)
229 1b0u_A Histidine permease; ABC 35.7 31 0.0011 21.3 2.8 17 41-57 164-180 (262)
230 2pth_A Peptidyl-tRNA hydrolase 35.4 25 0.00087 21.3 2.3 61 2-62 23-100 (193)
231 1vma_A Cell division protein F 35.3 85 0.0029 19.9 5.2 24 35-58 173-196 (306)
232 1jjv_A Dephospho-COA kinase; P 35.3 45 0.0015 19.1 3.3 16 3-19 16-31 (206)
233 2eyu_A Twitching motility prot 35.3 30 0.001 21.4 2.7 22 36-57 86-107 (261)
234 3mwy_W Chromo domain-containin 35.2 64 0.0022 23.1 4.6 14 48-61 367-380 (800)
235 3n0v_A Formyltetrahydrofolate 35.2 82 0.0028 20.0 4.8 45 6-56 130-174 (286)
236 3q3j_B RHO-related GTP-binding 35.1 62 0.0021 18.7 4.0 33 4-45 164-198 (214)
237 3q85_A GTP-binding protein REM 34.5 36 0.0012 18.3 2.7 18 5-22 131-148 (169)
238 2pze_A Cystic fibrosis transme 34.4 52 0.0018 19.7 3.6 19 40-58 140-158 (229)
239 3kom_A Transketolase; rossmann 34.3 1.1E+02 0.0038 21.8 5.7 38 9-55 206-246 (663)
240 2olj_A Amino acid ABC transpor 34.3 32 0.0011 21.4 2.7 17 41-57 170-186 (263)
241 2ixe_A Antigen peptide transpo 34.2 32 0.0011 21.4 2.7 18 41-58 167-184 (271)
242 2ihy_A ABC transporter, ATP-bi 34.2 33 0.0011 21.4 2.8 14 44-57 175-188 (279)
243 2d2e_A SUFC protein; ABC-ATPas 34.1 29 0.00099 21.2 2.5 16 43-58 156-171 (250)
244 3be4_A Adenylate kinase; malar 34.1 25 0.00087 20.6 2.1 18 3-20 19-36 (217)
245 3ber_A Probable ATP-dependent 34.1 12 0.00043 22.5 0.8 14 49-62 187-200 (249)
246 3ly5_A ATP-dependent RNA helic 33.8 13 0.00043 22.7 0.8 14 49-62 202-215 (262)
247 1qf9_A UMP/CMP kinase, protein 33.7 27 0.00092 19.5 2.1 18 3-20 20-37 (194)
248 2zu0_C Probable ATP-dependent 33.6 30 0.001 21.4 2.5 15 43-57 177-191 (267)
249 3hdg_A Uncharacterized protein 33.4 33 0.0011 17.8 2.4 17 40-56 43-59 (137)
250 3l84_A Transketolase; TKT, str 33.4 1.1E+02 0.0038 21.6 5.6 39 8-55 200-239 (632)
251 3a10_A Response regulator; pho 33.4 41 0.0014 16.8 2.7 15 41-55 38-52 (116)
252 3m49_A Transketolase; alpha-be 33.4 1.2E+02 0.004 21.8 5.7 39 8-55 229-270 (690)
253 1tmy_A CHEY protein, TMY; chem 33.4 34 0.0011 17.3 2.4 15 41-55 40-54 (120)
254 2i52_A Hypothetical protein; s 33.3 40 0.0014 19.1 2.7 20 32-51 41-60 (121)
255 4g1u_C Hemin import ATP-bindin 33.1 34 0.0012 21.2 2.7 10 48-57 165-174 (266)
256 1wp9_A ATP-dependent RNA helic 33.0 20 0.0007 22.7 1.7 15 48-62 125-139 (494)
257 1f2t_B RAD50 ABC-ATPase; DNA d 33.0 63 0.0022 18.2 3.7 12 46-57 79-90 (148)
258 2ywr_A Phosphoribosylglycinami 33.0 82 0.0028 19.0 6.0 51 6-61 43-93 (216)
259 1vpl_A ABC transporter, ATP-bi 33.0 52 0.0018 20.2 3.5 17 41-57 157-173 (256)
260 3gfo_A Cobalt import ATP-bindi 32.9 34 0.0012 21.4 2.7 14 44-57 157-170 (275)
261 3n53_A Response regulator rece 32.9 37 0.0013 17.7 2.5 16 40-55 38-53 (140)
262 2yz2_A Putative ABC transporte 32.8 35 0.0012 21.1 2.7 19 40-58 148-166 (266)
263 3q72_A GTP-binding protein RAD 32.8 46 0.0016 17.8 3.0 19 5-23 128-146 (166)
264 1g6h_A High-affinity branched- 32.7 56 0.0019 20.0 3.6 15 43-57 166-180 (257)
265 3fmo_B ATP-dependent RNA helic 32.7 13 0.00045 23.3 0.7 15 48-62 235-249 (300)
266 3kht_A Response regulator; PSI 32.7 37 0.0013 17.8 2.6 18 39-56 42-59 (144)
267 1ak2_A Adenylate kinase isoenz 32.6 27 0.00093 20.7 2.1 18 3-20 30-47 (233)
268 2pjz_A Hypothetical protein ST 32.6 56 0.0019 20.2 3.6 18 40-57 138-155 (263)
269 2cbz_A Multidrug resistance-as 32.5 49 0.0017 20.0 3.3 18 40-57 137-154 (237)
270 2jc4_A Exodeoxyribonuclease II 32.5 46 0.0016 19.3 3.1 24 36-59 14-37 (256)
271 1dku_A Protein (phosphoribosyl 32.5 19 0.00066 23.2 1.5 47 3-57 179-226 (317)
272 3crm_A TRNA delta(2)-isopenten 32.3 1E+02 0.0035 19.9 5.8 21 3-23 19-39 (323)
273 1y63_A LMAJ004144AAA protein; 32.3 21 0.00073 20.3 1.6 19 3-21 24-43 (184)
274 2pl1_A Transcriptional regulat 32.3 44 0.0015 16.8 2.7 16 40-55 36-51 (121)
275 3b85_A Phosphate starvation-in 32.3 21 0.00071 21.3 1.5 13 47-59 121-133 (208)
276 1aky_A Adenylate kinase; ATP:A 32.2 28 0.00097 20.3 2.1 18 3-20 18-35 (220)
277 2z0m_A 337AA long hypothetical 32.2 13 0.00046 22.6 0.7 14 49-62 130-143 (337)
278 3tqr_A Phosphoribosylglycinami 32.1 87 0.003 19.0 5.8 49 7-60 47-95 (215)
279 2pju_A Propionate catabolism o 32.1 51 0.0018 20.2 3.3 34 2-46 160-193 (225)
280 2ff7_A Alpha-hemolysin translo 32.1 56 0.0019 19.9 3.5 18 41-58 156-173 (247)
281 3dah_A Ribose-phosphate pyroph 32.1 56 0.0019 21.2 3.6 20 3-22 178-197 (319)
282 3hv2_A Response regulator/HD d 32.0 46 0.0016 17.7 2.9 17 40-56 50-66 (153)
283 1dz3_A Stage 0 sporulation pro 32.0 36 0.0012 17.5 2.4 16 40-55 40-55 (130)
284 2iec_A Uncharacterized protein 31.9 39 0.0013 19.4 2.6 21 32-52 38-58 (131)
285 3c97_A Signal transduction his 31.9 43 0.0015 17.5 2.7 16 40-55 46-61 (140)
286 1sgw_A Putative ABC transporte 31.9 52 0.0018 19.7 3.3 19 41-59 144-162 (214)
287 3cnb_A DNA-binding response re 31.8 43 0.0015 17.3 2.7 17 40-56 46-62 (143)
288 4e7p_A Response regulator; DNA 31.8 39 0.0013 18.0 2.6 18 39-56 57-74 (150)
289 3eod_A Protein HNR; response r 31.7 37 0.0013 17.4 2.4 16 40-55 43-58 (130)
290 3jvv_A Twitching mobility prot 31.6 36 0.0012 22.2 2.7 22 37-58 185-206 (356)
291 3kv1_A Transcriptional repress 31.6 37 0.0013 21.1 2.7 45 3-47 101-149 (267)
292 1srr_A SPO0F, sporulation resp 31.6 37 0.0013 17.2 2.4 16 41-56 40-55 (124)
293 1hjr_A Holliday junction resol 31.6 27 0.00091 20.4 1.9 53 6-61 87-144 (158)
294 1mb3_A Cell division response 31.5 37 0.0013 17.1 2.4 16 40-55 37-52 (124)
295 2vli_A Antibiotic resistance p 31.5 28 0.00095 19.4 1.9 16 3-18 19-34 (183)
296 2qv0_A Protein MRKE; structura 31.5 44 0.0015 17.4 2.7 16 40-55 47-62 (143)
297 1ryb_A CRS2; alpha-beta, hydro 31.4 30 0.001 21.2 2.2 60 2-61 38-113 (205)
298 2z2i_A PTH, peptidyl-tRNA hydr 31.3 28 0.00094 21.1 2.0 59 3-61 26-101 (191)
299 2qzj_A Two-component response 31.3 44 0.0015 17.5 2.7 16 40-55 40-55 (136)
300 1jkx_A GART;, phosphoribosylgl 31.3 88 0.003 18.8 5.8 51 6-61 42-92 (212)
301 1sky_E F1-ATPase, F1-ATP synth 31.3 18 0.00061 24.9 1.2 16 47-62 244-259 (473)
302 3lou_A Formyltetrahydrofolate 31.2 95 0.0033 19.8 4.6 45 6-56 135-179 (292)
303 2q6t_A DNAB replication FORK h 31.1 1.1E+02 0.0039 20.1 6.6 19 45-63 307-325 (444)
304 3cm0_A Adenylate kinase; ATP-b 31.0 37 0.0013 19.0 2.4 18 3-20 18-35 (186)
305 3cg4_A Response regulator rece 31.0 53 0.0018 17.0 3.0 18 39-56 42-59 (142)
306 3b2n_A Uncharacterized protein 31.0 38 0.0013 17.6 2.4 16 40-55 41-56 (133)
307 2ogf_A Hypothetical protein MJ 30.8 50 0.0017 18.8 2.9 20 32-51 46-65 (122)
308 3ilx_A First ORF in transposon 30.7 49 0.0017 18.5 2.9 30 34-63 49-78 (143)
309 3tkl_A RAS-related protein RAB 30.6 57 0.002 18.0 3.2 20 4-23 142-161 (196)
310 1dbw_A Transcriptional regulat 30.6 46 0.0016 17.0 2.7 16 40-55 39-54 (126)
311 3eul_A Possible nitrate/nitrit 30.5 42 0.0014 17.8 2.5 17 40-56 53-69 (152)
312 3a11_A Translation initiation 30.5 50 0.0017 21.5 3.2 28 1-28 230-257 (338)
313 2r2n_A Kynurenine/alpha-aminoa 30.4 52 0.0018 21.1 3.3 27 33-60 209-235 (425)
314 2i4i_A ATP-dependent RNA helic 30.3 15 0.00053 23.2 0.7 14 49-62 176-189 (417)
315 3lda_A DNA repair protein RAD5 30.3 61 0.0021 21.5 3.7 26 37-62 262-287 (400)
316 3m6m_D Sensory/regulatory prot 30.3 47 0.0016 17.6 2.7 16 40-55 50-65 (143)
317 3t61_A Gluconokinase; PSI-biol 30.2 39 0.0013 19.3 2.5 18 3-20 32-49 (202)
318 2p5s_A RAS and EF-hand domain 30.2 50 0.0017 18.6 2.9 18 5-22 161-178 (199)
319 3crn_A Response regulator rece 30.2 48 0.0017 17.1 2.7 16 40-55 39-54 (132)
320 2ga8_A Hypothetical 39.9 kDa p 30.0 8.3 0.00028 25.6 -0.6 17 3-19 38-54 (359)
321 1hv8_A Putative ATP-dependent 29.9 16 0.00054 22.6 0.7 14 49-62 148-161 (367)
322 1b5p_A Protein (aspartate amin 29.9 52 0.0018 20.7 3.2 27 34-61 183-209 (385)
323 2qxy_A Response regulator; reg 29.9 40 0.0014 17.6 2.4 18 39-56 39-56 (142)
324 1xhf_A DYE resistance, aerobic 29.9 50 0.0017 16.6 2.7 16 40-55 39-54 (123)
325 2o1e_A YCDH; alpha-beta protei 29.8 41 0.0014 21.4 2.7 43 2-44 250-300 (312)
326 2gkg_A Response regulator homo 29.8 42 0.0014 16.9 2.4 16 41-56 42-57 (127)
327 2ghi_A Transport protein; mult 29.7 38 0.0013 20.8 2.5 17 41-57 166-182 (260)
328 1mv5_A LMRA, multidrug resista 29.6 58 0.002 19.6 3.3 19 40-58 149-167 (243)
329 1sff_A 4-aminobutyrate aminotr 29.6 45 0.0015 21.1 2.9 26 33-59 218-243 (426)
330 1meo_A Phosophoribosylglycinam 29.6 95 0.0032 18.7 6.0 49 7-60 43-91 (209)
331 2lpm_A Two-component response 29.5 48 0.0016 18.1 2.7 16 40-55 45-60 (123)
332 3qgu_A LL-diaminopimelate amin 29.5 51 0.0017 21.2 3.1 29 33-62 227-255 (449)
333 1gvn_B Zeta; postsegregational 29.5 1E+02 0.0035 19.1 5.9 23 3-25 47-69 (287)
334 3ei9_A LL-diaminopimelate amin 29.4 47 0.0016 21.2 3.0 28 33-61 216-243 (432)
335 3crv_A XPD/RAD3 related DNA he 29.4 28 0.00096 23.7 1.9 15 48-62 173-187 (551)
336 1u6t_A SH3 domain-binding glut 29.3 78 0.0027 17.6 4.6 45 5-57 21-73 (121)
337 3pey_A ATP-dependent RNA helic 29.3 16 0.00056 22.7 0.7 15 48-62 145-159 (395)
338 1t5o_A EIF2BD, translation ini 29.3 55 0.0019 21.5 3.3 26 1-26 245-270 (351)
339 4dq6_A Putative pyridoxal phos 29.1 73 0.0025 19.7 3.8 28 34-62 183-210 (391)
340 2hxs_A RAB-26, RAS-related pro 29.0 66 0.0022 17.4 3.2 13 9-21 141-153 (178)
341 2xau_A PRE-mRNA-splicing facto 28.9 24 0.00083 25.4 1.6 26 34-59 194-219 (773)
342 1s2m_A Putative ATP-dependent 28.9 19 0.00063 22.8 0.9 14 49-62 164-177 (400)
343 2a9o_A Response regulator; ess 28.8 45 0.0016 16.6 2.4 14 42-55 39-52 (120)
344 3dz8_A RAS-related protein RAB 28.7 50 0.0017 18.4 2.7 18 5-22 150-167 (191)
345 3cz5_A Two-component response 28.7 53 0.0018 17.4 2.8 17 40-56 43-59 (153)
346 1zp6_A Hypothetical protein AT 28.6 39 0.0013 19.0 2.2 23 3-25 23-45 (191)
347 1ukz_A Uridylate kinase; trans 28.6 33 0.0011 19.6 1.9 18 3-20 29-46 (203)
348 3fht_A ATP-dependent RNA helic 28.5 17 0.00059 22.9 0.7 15 48-62 168-182 (412)
349 1zgz_A Torcad operon transcrip 28.5 55 0.0019 16.4 2.7 16 40-55 38-53 (122)
350 2j0s_A ATP-dependent RNA helic 28.5 23 0.00079 22.4 1.3 15 48-62 179-193 (410)
351 3iz5_H 60S ribosomal protein L 28.5 67 0.0023 20.6 3.4 28 5-32 161-188 (258)
352 2pt7_A CAG-ALFA; ATPase, prote 28.4 41 0.0014 21.5 2.5 24 36-59 228-251 (330)
353 1t9k_A Probable methylthioribo 28.4 58 0.002 21.4 3.3 27 1-27 248-274 (347)
354 3cfy_A Putative LUXO repressor 28.4 45 0.0015 17.5 2.4 16 40-55 40-55 (137)
355 1y0n_A Hypothetical UPF0270 pr 28.3 70 0.0024 16.7 3.5 26 34-60 37-62 (78)
356 2j48_A Two-component sensor ki 28.2 52 0.0018 16.1 2.5 15 42-56 39-53 (119)
357 3gt7_A Sensor protein; structu 28.1 48 0.0017 17.8 2.5 17 39-55 42-58 (154)
358 1p6q_A CHEY2; chemotaxis, sign 28.1 53 0.0018 16.7 2.6 16 40-55 43-58 (129)
359 3cg0_A Response regulator rece 28.0 50 0.0017 17.0 2.5 16 40-55 46-61 (140)
360 1zd8_A GTP:AMP phosphotransfer 28.0 33 0.0011 20.1 1.9 18 3-20 21-38 (227)
361 2if2_A Dephospho-COA kinase; a 27.9 87 0.003 17.7 3.8 17 3-20 15-31 (204)
362 3kyj_B CHEY6 protein, putative 27.8 62 0.0021 17.0 2.9 16 40-55 51-67 (145)
363 3o1l_A Formyltetrahydrofolate 27.8 97 0.0033 19.9 4.2 46 6-57 145-190 (302)
364 4gp7_A Metallophosphoesterase; 27.8 55 0.0019 18.4 2.8 14 46-59 99-112 (171)
365 3fb4_A Adenylate kinase; psych 27.7 38 0.0013 19.5 2.1 18 3-20 14-31 (216)
366 1ek0_A Protein (GTP-binding pr 27.7 67 0.0023 17.0 3.1 16 7-22 135-150 (170)
367 3c3m_A Response regulator rece 27.7 56 0.0019 17.0 2.7 16 40-55 39-54 (138)
368 2a0u_A Initiation factor 2B; S 27.6 60 0.0021 21.7 3.3 27 1-27 277-303 (383)
369 1fg7_A Histidinol phosphate am 27.6 63 0.0022 20.1 3.3 28 33-62 164-191 (356)
370 2yvk_A Methylthioribose-1-phos 27.6 61 0.0021 21.6 3.3 27 1-27 273-299 (374)
371 1xti_A Probable ATP-dependent 27.4 18 0.00062 22.6 0.7 15 48-62 152-166 (391)
372 2cy8_A D-phgat, D-phenylglycin 27.3 1.2E+02 0.0041 19.5 4.7 26 33-59 220-245 (453)
373 1vkf_A Glycerol uptake operon 27.3 28 0.00096 21.1 1.5 29 37-65 45-74 (188)
374 2qv5_A AGR_C_5032P, uncharacte 27.3 46 0.0016 21.0 2.5 44 4-51 167-214 (261)
375 2eh6_A Acoat, acetylornithine 27.2 59 0.002 20.1 3.1 28 33-61 191-219 (375)
376 4gew_A 5'-tyrosyl-DNA phosphod 27.1 56 0.0019 21.0 3.0 25 34-58 136-160 (362)
377 3g6s_A Putative endonuclease/e 27.1 41 0.0014 19.9 2.2 25 35-59 25-49 (267)
378 2qr3_A Two-component system re 27.0 55 0.0019 16.9 2.6 17 40-56 39-55 (140)
379 1fuu_A Yeast initiation factor 26.9 23 0.00078 22.2 1.1 15 48-62 162-176 (394)
380 2epj_A Glutamate-1-semialdehyd 26.9 1.1E+02 0.0036 19.6 4.3 26 33-59 222-247 (434)
381 2voa_A AF_EXO, XTHA, exodeoxyr 26.8 52 0.0018 19.1 2.7 23 37-59 16-38 (257)
382 3tbk_A RIG-I helicase domain; 26.8 29 0.001 22.7 1.6 15 49-63 128-142 (555)
383 3ilh_A Two component response 26.8 59 0.002 16.8 2.7 9 47-55 59-67 (146)
384 4adb_A Succinylornithine trans 26.7 64 0.0022 20.2 3.2 26 33-59 202-227 (406)
385 3mpr_A Putative endonuclease/e 26.7 80 0.0027 19.2 3.6 26 34-59 29-54 (298)
386 2fu5_C RAS-related protein RAB 26.6 63 0.0022 17.6 2.9 18 5-22 135-152 (183)
387 1mvo_A PHOP response regulator 26.5 51 0.0017 17.0 2.4 14 42-55 41-54 (136)
388 2zay_A Response regulator rece 26.5 55 0.0019 17.1 2.5 15 41-55 45-59 (147)
389 3qkt_A DNA double-strand break 26.4 71 0.0024 20.2 3.4 17 43-59 267-283 (339)
390 1zod_A DGD, 2,2-dialkylglycine 26.4 66 0.0022 20.5 3.2 28 33-61 222-250 (433)
391 1pzn_A RAD51, DNA repair and r 26.4 67 0.0023 20.6 3.3 15 47-61 230-244 (349)
392 2wjg_A FEOB, ferrous iron tran 26.4 53 0.0018 18.1 2.5 18 6-23 134-151 (188)
393 4a8j_C Elongator complex prote 26.4 1.3E+02 0.0046 19.3 6.2 55 8-62 98-163 (280)
394 1gd9_A Aspartate aminotransfer 26.4 70 0.0024 19.9 3.3 28 34-62 179-206 (389)
395 2onk_A Molybdate/tungstate ABC 26.3 31 0.0011 21.0 1.6 17 41-57 137-153 (240)
396 3lhk_A Putative DNA binding pr 26.3 64 0.0022 18.2 2.9 30 34-63 52-81 (154)
397 3c5c_A RAS-like protein 12; GD 26.3 90 0.0031 17.4 3.7 17 6-22 150-166 (187)
398 3eiq_A Eukaryotic initiation f 26.3 20 0.00069 22.6 0.8 13 49-61 184-196 (414)
399 3dl0_A Adenylate kinase; phosp 26.3 38 0.0013 19.5 2.0 18 3-20 14-31 (216)
400 3fvq_A Fe(3+) IONS import ATP- 26.3 50 0.0017 21.7 2.7 17 41-57 149-165 (359)
401 3kkq_A RAS-related protein M-R 26.3 54 0.0018 18.0 2.5 17 6-22 146-162 (183)
402 4eu1_A Mitochondrial aspartate 26.3 59 0.002 20.5 3.0 28 33-61 201-228 (409)
403 1e4v_A Adenylate kinase; trans 26.2 42 0.0014 19.4 2.1 18 3-20 14-31 (214)
404 3dm5_A SRP54, signal recogniti 26.2 1.4E+02 0.0049 20.2 5.0 26 33-58 167-192 (443)
405 3fdb_A Beta C-S lyase, putativ 26.1 93 0.0032 19.1 3.8 29 33-62 168-196 (377)
406 3ecs_A Translation initiation 26.1 64 0.0022 20.9 3.1 24 1-24 210-233 (315)
407 2h92_A Cytidylate kinase; ross 26.1 41 0.0014 19.4 2.1 18 3-20 17-34 (219)
408 2a6a_A Hypothetical protein TM 26.1 44 0.0015 20.3 2.2 23 2-24 85-107 (218)
409 3cu5_A Two component transcrip 26.1 52 0.0018 17.3 2.4 16 40-55 41-56 (141)
410 3f6t_A Aspartate aminotransfer 26.0 70 0.0024 21.6 3.4 28 33-60 262-289 (533)
411 2zj8_A DNA helicase, putative 25.9 31 0.0011 24.1 1.7 14 49-62 139-152 (720)
412 1urr_A CG18505 protein; acylph 25.9 82 0.0028 16.7 3.3 54 5-59 29-84 (102)
413 1xkp_C Chaperone protein YSCB; 25.9 1E+02 0.0035 17.9 3.6 28 33-60 61-91 (143)
414 3nra_A Aspartate aminotransfer 25.9 62 0.0021 20.2 3.0 28 33-61 197-224 (407)
415 2bbs_A Cystic fibrosis transme 25.9 85 0.0029 19.7 3.6 19 40-58 169-187 (290)
416 2jaq_A Deoxyguanosine kinase; 25.8 52 0.0018 18.5 2.4 17 3-19 14-30 (205)
417 2fwr_A DNA repair protein RAD2 25.7 33 0.0011 22.4 1.7 15 48-62 192-206 (472)
418 2rjn_A Response regulator rece 25.7 58 0.002 17.3 2.6 17 40-56 43-59 (154)
419 1z47_A CYSA, putative ABC-tran 25.6 53 0.0018 21.5 2.7 17 41-57 156-172 (355)
420 2w8t_A SPT, serine palmitoyltr 25.5 63 0.0022 20.7 3.1 24 37-61 213-236 (427)
421 3uk1_A Transketolase; structur 25.5 1.6E+02 0.0056 21.2 5.3 38 9-55 245-284 (711)
422 1vyb_A ORF2 contains A reverse 25.5 64 0.0022 18.4 2.8 22 37-58 24-45 (238)
423 3efb_A Probable SOR-operon reg 25.5 44 0.0015 20.7 2.2 44 3-46 108-155 (266)
424 3h5i_A Response regulator/sens 25.4 61 0.0021 16.9 2.6 16 40-55 41-57 (140)
425 3fsl_A Aromatic-amino-acid ami 25.4 67 0.0023 20.0 3.1 29 33-62 191-219 (397)
426 2nzj_A GTP-binding protein REM 25.4 63 0.0021 17.4 2.7 17 6-22 134-150 (175)
427 3t8y_A CHEB, chemotaxis respon 25.3 53 0.0018 17.9 2.4 16 40-55 63-78 (164)
428 4ds3_A Phosphoribosylglycinami 25.3 1.2E+02 0.004 18.4 5.6 49 7-60 50-98 (209)
429 1wdu_A TRAS1 ORF2P; four-layer 25.3 75 0.0026 18.5 3.2 24 36-59 33-56 (245)
430 3u5c_M 40S ribosomal protein S 25.2 29 0.00098 20.2 1.2 28 4-31 73-102 (143)
431 2cjg_A L-lysine-epsilon aminot 25.2 68 0.0023 20.9 3.2 26 33-59 250-275 (449)
432 4a2p_A RIG-I, retinoic acid in 25.2 32 0.0011 22.6 1.6 14 49-62 131-144 (556)
433 3i8s_A Ferrous iron transport 25.2 1.2E+02 0.0041 18.5 4.2 31 7-46 135-165 (274)
434 1jbe_A Chemotaxis protein CHEY 25.2 58 0.002 16.5 2.4 16 40-55 41-56 (128)
435 4ddu_A Reverse gyrase; topoiso 25.1 39 0.0013 25.5 2.2 27 36-62 184-210 (1104)
436 3l8a_A METC, putative aminotra 24.9 81 0.0028 20.1 3.4 28 34-62 213-240 (421)
437 1vb5_A Translation initiation 24.8 77 0.0026 19.9 3.3 27 1-27 198-224 (276)
438 2rdm_A Response regulator rece 24.8 66 0.0023 16.3 2.6 17 40-56 41-58 (132)
439 2v6i_A RNA helicase; membrane, 24.8 40 0.0014 22.1 2.0 25 37-61 82-106 (431)
440 1m32_A 2-aminoethylphosphonate 24.8 60 0.002 19.7 2.7 25 37-62 150-174 (366)
441 2jk1_A HUPR, hydrogenase trans 24.7 58 0.002 16.9 2.4 16 40-55 36-51 (139)
442 2r5f_A Transcriptional regulat 24.7 1.3E+02 0.0044 18.5 4.4 44 3-46 105-152 (264)
443 1q3t_A Cytidylate kinase; nucl 24.7 60 0.0021 19.2 2.7 17 3-19 30-46 (236)
444 2g3y_A GTP-binding protein GEM 24.6 50 0.0017 19.5 2.3 16 7-22 169-184 (211)
445 1e69_A Chromosome segregation 24.6 53 0.0018 20.6 2.5 14 47-60 240-253 (322)
446 1zak_A Adenylate kinase; ATP:A 24.6 31 0.0011 20.1 1.4 17 3-19 19-35 (222)
447 3sqw_A ATP-dependent RNA helic 24.6 64 0.0022 21.9 3.0 16 47-62 174-189 (579)
448 1g16_A RAS-related protein SEC 24.6 54 0.0018 17.5 2.3 17 6-22 130-146 (170)
449 2db3_A ATP-dependent RNA helic 24.5 23 0.00079 23.2 0.8 15 48-62 203-217 (434)
450 1iug_A Putative aspartate amin 24.5 68 0.0023 19.4 3.0 25 37-61 140-165 (352)
451 7aat_A Aspartate aminotransfer 24.5 67 0.0023 20.1 3.0 28 33-61 193-220 (401)
452 3dzz_A Putative pyridoxal 5'-p 24.4 81 0.0028 19.5 3.3 28 34-62 179-206 (391)
453 1kht_A Adenylate kinase; phosp 24.4 33 0.0011 19.1 1.4 17 3-19 17-38 (192)
454 1z0f_A RAB14, member RAS oncog 24.3 57 0.002 17.6 2.4 14 8-21 145-158 (179)
455 3piu_A 1-aminocyclopropane-1-c 24.3 66 0.0023 20.5 3.0 26 34-60 210-235 (435)
456 2vl7_A XPD; helicase, unknown 24.3 35 0.0012 23.2 1.7 15 48-62 175-189 (540)
457 3fvs_A Kynurenine--oxoglutarat 24.3 68 0.0023 20.2 3.0 28 33-61 192-219 (422)
458 3ele_A Amino transferase; RER0 24.2 73 0.0025 19.9 3.1 30 33-62 190-224 (398)
459 3nh6_A ATP-binding cassette SU 24.1 54 0.0018 20.9 2.5 17 41-57 201-217 (306)
460 1g5t_A COB(I)alamin adenosyltr 24.1 60 0.002 19.6 2.6 25 34-58 102-130 (196)
461 3kax_A Aminotransferase, class 24.1 88 0.003 19.2 3.4 29 33-62 174-202 (383)
462 2xzm_U Ribosomal protein L7AE 24.1 73 0.0025 17.7 2.8 28 4-31 57-84 (126)
463 2pbr_A DTMP kinase, thymidylat 24.0 74 0.0025 17.6 2.9 19 3-21 14-35 (195)
464 2a5j_A RAS-related protein RAB 23.9 89 0.0031 17.3 3.2 17 6-22 149-165 (191)
465 2gf9_A RAS-related protein RAB 23.8 55 0.0019 18.2 2.3 17 6-22 150-166 (189)
466 1zh2_A KDP operon transcriptio 23.8 63 0.0021 16.1 2.4 13 43-55 40-52 (121)
467 3tw8_B RAS-related protein RAB 23.8 72 0.0025 17.2 2.8 19 5-23 135-153 (181)
468 2r8o_A Transketolase 1, TK 1; 23.7 2E+02 0.0067 20.4 5.7 38 9-55 204-244 (669)
469 3i5x_A ATP-dependent RNA helic 23.7 24 0.00083 23.6 0.8 15 48-62 226-240 (563)
470 1knq_A Gluconate kinase; ALFA/ 23.7 67 0.0023 17.7 2.6 17 3-19 22-38 (175)
471 3gd7_A Fusion complex of cysti 23.7 64 0.0022 21.4 2.8 18 40-57 165-182 (390)
472 1oyw_A RECQ helicase, ATP-depe 23.6 49 0.0017 22.4 2.3 15 47-61 138-152 (523)
473 1z08_A RAS-related protein RAB 23.6 87 0.003 16.7 3.1 8 19-26 117-124 (170)
474 1r2q_A RAS-related protein RAB 23.5 73 0.0025 16.9 2.7 6 21-26 119-124 (170)
475 3rqi_A Response regulator prot 23.5 60 0.002 18.1 2.4 16 40-55 43-58 (184)
476 3ihw_A Centg3; RAS, centaurin, 23.5 93 0.0032 17.3 3.2 18 5-22 143-161 (184)
477 2ozp_A N-acetyl-gamma-glutamyl 23.3 60 0.0021 21.0 2.6 24 33-56 250-273 (345)
478 3e2y_A Kynurenine-oxoglutarate 23.3 74 0.0025 19.9 3.0 27 34-61 186-212 (410)
479 3tui_C Methionine import ATP-b 23.3 56 0.0019 21.6 2.5 14 44-57 177-190 (366)
480 2qsj_A DNA-binding response re 23.3 77 0.0026 16.7 2.8 17 40-56 41-58 (154)
481 3f6c_A Positive transcription 23.2 44 0.0015 17.2 1.7 16 41-56 39-54 (134)
482 2r25_B Osmosensing histidine p 23.2 77 0.0026 16.4 2.7 9 47-55 51-59 (133)
483 1cke_A CK, MSSA, protein (cyti 23.2 67 0.0023 18.5 2.6 17 3-19 19-35 (227)
484 3lw7_A Adenylate kinase relate 23.1 48 0.0017 17.8 1.9 17 3-20 15-31 (179)
485 3jtx_A Aminotransferase; NP_28 23.0 77 0.0026 19.7 3.0 29 33-62 186-214 (396)
486 3k7y_A Aspartate aminotransfer 23.0 1.5E+02 0.005 19.3 4.5 26 33-59 192-217 (405)
487 3i4j_A Aminotransferase, class 22.9 1.1E+02 0.0037 19.5 3.8 44 15-59 191-235 (430)
488 3r6m_A YEAZ, resuscitation pro 22.9 58 0.002 19.8 2.3 23 2-24 75-97 (213)
489 3g0t_A Putative aminotransfera 22.8 88 0.003 19.8 3.3 28 33-61 200-227 (437)
490 2yrr_A Aminotransferase, class 22.7 70 0.0024 19.3 2.7 24 37-61 143-166 (353)
491 2o0j_A Terminase, DNA packagin 22.7 55 0.0019 21.7 2.4 18 44-61 269-286 (385)
492 1z0j_A RAB-22, RAS-related pro 22.7 80 0.0027 16.8 2.8 12 9-20 137-148 (170)
493 4g9i_A Hydrogenase maturation 22.7 37 0.0013 24.7 1.6 21 2-22 466-486 (772)
494 3hzh_A Chemotaxis response reg 22.7 61 0.0021 17.4 2.3 16 40-55 73-90 (157)
495 2i1q_A DNA repair and recombin 22.7 42 0.0014 20.9 1.7 26 37-62 192-218 (322)
496 1oxx_K GLCV, glucose, ABC tran 22.6 97 0.0033 20.1 3.5 17 41-57 151-167 (353)
497 2ixd_A LMBE-related protein; h 22.6 1.4E+02 0.0048 18.2 4.9 45 7-54 58-103 (242)
498 1xyg_A Putative N-acetyl-gamma 22.5 67 0.0023 20.9 2.7 26 33-58 268-293 (359)
499 4aby_A DNA repair protein RECN 22.5 94 0.0032 19.9 3.4 14 46-59 311-326 (415)
500 1v43_A Sugar-binding transport 22.4 66 0.0022 21.2 2.7 14 44-57 155-168 (372)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4e-21 Score=129.74 Aligned_cols=65 Identities=31% Similarity=0.502 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++|+++|+.|+.++||||||||+|+++++|...
T Consensus 196 TllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~ 260 (405)
T 4b4t_J 196 TLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260 (405)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCS
T ss_pred HHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988653
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.2e-20 Score=126.25 Aligned_cols=65 Identities=37% Similarity=0.555 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++++.+|+.|+.++||||||||+|+++++|...
T Consensus 230 TlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 230 TLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp HHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCS
T ss_pred HHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999654
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-20 Score=125.22 Aligned_cols=65 Identities=37% Similarity=0.588 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+.++||||||||+|+++++|.+.
T Consensus 229 TllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~ 293 (434)
T 4b4t_M 229 TLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293 (434)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSG
T ss_pred HHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999998653
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=123.71 Aligned_cols=65 Identities=34% Similarity=0.519 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++++|+.+++++++++|+|+++++++.+|..|+.++||||||||+|+++++|.+.
T Consensus 229 TllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~ 293 (437)
T 4b4t_L 229 TLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293 (437)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSS
T ss_pred HHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccC
Confidence 89999999999999999999999999999999999999999999999999999999999998653
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-19 Score=123.73 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+.++||||||||+|+++++|++.
T Consensus 257 TlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 321 (467)
T 4b4t_H 257 TLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321 (467)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSS
T ss_pred HHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCc
Confidence 89999999999999999999999999999999999999999999999999999999999998653
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.8e-19 Score=121.34 Aligned_cols=65 Identities=42% Similarity=0.571 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++|+++|+.|+.++||||||||+|+++++|.+.
T Consensus 220 T~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~ 284 (428)
T 4b4t_K 220 TMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284 (428)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSS
T ss_pred HHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999998543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.7e-19 Score=129.48 Aligned_cols=64 Identities=38% Similarity=0.621 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.+++++++++|+|++|++++++|+.|++.+||||||||+|+++++|+.
T Consensus 525 T~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~ 588 (806)
T 3cf2_A 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588 (806)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-----
T ss_pred hHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999863
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.74 E-value=3.3e-18 Score=122.83 Aligned_cols=65 Identities=77% Similarity=1.114 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++.+|+.++++++.++|+|+++++++++|+.|+.++||||||||+|+|+++|++.
T Consensus 252 T~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~ 316 (806)
T 3cf2_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316 (806)
T ss_dssp HHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC
T ss_pred HHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999998764
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.59 E-value=4.9e-15 Score=96.05 Aligned_cols=64 Identities=34% Similarity=0.555 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.++|+|++++.++.+|+.++..+|+||||||+|.++++|+.
T Consensus 65 T~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~ 128 (322)
T 3eie_A 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 128 (322)
T ss_dssp HHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---
T ss_pred HHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999987754
No 10
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.56 E-value=3.9e-15 Score=95.89 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHH----HhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a----~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.++|+|++++.++++|+.+ +..+|+||||||||++++++++
T Consensus 50 T~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~ 117 (293)
T 3t15_A 50 SFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 117 (293)
T ss_dssp HHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------
T ss_pred HHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCC
Confidence 789999999999999999999999999999999999999999 5678999999999999986653
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.56 E-value=6.6e-15 Score=95.91 Aligned_cols=65 Identities=35% Similarity=0.564 Sum_probs=61.7
Q ss_pred hHHHHHHHHHh-CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSL-GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~-~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|+++ +.+|+.++++++.++|+|++++.++.+|+.++..+|+||||||+|.++++|...
T Consensus 59 T~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~ 124 (322)
T 1xwi_A 59 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 124 (322)
T ss_dssp HHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC
T ss_pred HHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc
Confidence 78999999999 899999999999999999999999999999999999999999999999887653
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.53 E-value=2.1e-14 Score=94.56 Aligned_cols=64 Identities=34% Similarity=0.555 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.++|+|++++.++.+|..++..+|+||||||+|.+.++|+.
T Consensus 98 T~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 161 (355)
T 2qp9_X 98 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161 (355)
T ss_dssp HHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----
T ss_pred HHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999987754
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.50 E-value=6.2e-14 Score=96.08 Aligned_cols=64 Identities=28% Similarity=0.524 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++++++|++++.+|+.++++++...|+|.++++++.+|+.|+..+||||||||+|.++++|+.
T Consensus 63 T~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 63 TLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred HHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 7899999999999999999999999999999999999999999999999999999999998753
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.49 E-value=2.4e-14 Score=92.17 Aligned_cols=63 Identities=38% Similarity=0.636 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++|+++|++++.+++.++++++.++|+|++++.++.+|+.++...|++|||||+|.+++.|+
T Consensus 63 T~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125 (301)
T ss_dssp HHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccC
Confidence 789999999999999999999999999999999999999999999999999999999988764
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.46 E-value=1.5e-13 Score=94.24 Aligned_cols=64 Identities=78% Similarity=1.132 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|++++++++.+|+.++++++.+.|.|+++..++.+|+.+...+|++|||||||.++++|+.
T Consensus 252 T~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (489)
T ss_dssp HHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS
T ss_pred HHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc
Confidence 7899999999999999999999999999999999999999999999999999999999998764
No 16
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.46 E-value=4e-14 Score=95.66 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhC--CcEEEEchhhhhhcccChHHHHHHHHHHHH---HhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLG--AFFFLINGPEIMSKLAGESESNLRKAFEEA---DKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~--~~~~~v~~~~l~~~~~ges~~~l~~if~~a---~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|++++ .+|+.++++++.++|+|++++ ++++|+.| +..+|+||||||+|+++++|+..
T Consensus 77 T~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 77 TALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 789999999999 999999999999999999998 99999999 77899999999999999988654
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.46 E-value=5e-14 Score=95.13 Aligned_cols=65 Identities=35% Similarity=0.564 Sum_probs=52.5
Q ss_pred hHHHHHHHHHh-CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSL-GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~-~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|+++ +.+|+.++++++.++|+|++++.++.+|+.++..+|+||||||+|.++++|...
T Consensus 181 T~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~ 246 (444)
T 2zan_A 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 246 (444)
T ss_dssp HHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC
T ss_pred HHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc
Confidence 78999999999 899999999999999999999999999999999999999999999999877653
No 18
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=88.70 Aligned_cols=64 Identities=33% Similarity=0.515 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.++|.|++++.++.+|..++..+|++|||||+|.++++|+.
T Consensus 131 T~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 131 TLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999887653
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=90.19 Aligned_cols=64 Identities=34% Similarity=0.485 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.+.|.|+++..++.+|+.++..+|+||||||||.++.+|..
T Consensus 162 T~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 162 TMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----
T ss_pred HHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999877654
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.43 E-value=5.1e-13 Score=84.34 Aligned_cols=64 Identities=39% Similarity=0.583 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+++.++++++.+.+.|+++..++.+|..++...|+||||||+|.++++|.+
T Consensus 65 T~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 65 TLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128 (285)
T ss_dssp HHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS
T ss_pred HHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc
Confidence 7899999999999999999999999999999999999999999999999999999999887754
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.41 E-value=8.3e-13 Score=83.90 Aligned_cols=64 Identities=33% Similarity=0.477 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+|+.++++++.+++.|++++.++.+|..+...+|++|||||+|.+..++..
T Consensus 68 T~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 131 (297)
T 3b9p_A 68 TLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131 (297)
T ss_dssp HHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--
T ss_pred HHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc
Confidence 7899999999999999999999999999999999999999999999999999999999887653
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=82.54 Aligned_cols=63 Identities=29% Similarity=0.515 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++|+++|++++.+++.++++++.+.+.|++++.++.+|+.++...|++|||||+|.++.+|.
T Consensus 53 T~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~ 115 (262)
T 2qz4_A 53 TLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRS 115 (262)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------
T ss_pred HHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccc
Confidence 789999999999999999999999999999999999999999999999999999999987764
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.37 E-value=1.4e-13 Score=98.54 Aligned_cols=64 Identities=38% Similarity=0.621 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|+++|++++.+++.++++++.++|+|++++.++.+|+.++...||||||||+|+++++|++
T Consensus 525 T~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~ 588 (806)
T 1ypw_A 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588 (806)
T ss_dssp HHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTT
T ss_pred HHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccC
Confidence 7899999999999999999999999999999999999999999999999999999999988864
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.36 E-value=1.4e-12 Score=81.66 Aligned_cols=64 Identities=34% Similarity=0.566 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|+++++++++++.+++.++++++.+.+.|++++.++.+|+.++...|+++|+||+|.+.+.+..
T Consensus 59 T~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~ 122 (257)
T 1lv7_A 59 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122 (257)
T ss_dssp HHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCST
T ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCC
Confidence 7899999999999999999999999999999999999999999889999999999999987653
No 25
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=82.70 Aligned_cols=63 Identities=35% Similarity=0.694 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++++++|++++.+++.+++.++.++|.|+++++++.+|+.++...|+++|+||+|.+++.|+
T Consensus 58 TtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~ 120 (274)
T 2x8a_A 58 TLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS 120 (274)
T ss_dssp HHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---
T ss_pred HHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccC
Confidence 789999999999999999999999999999999999999999889999999999999987764
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.27 E-value=4.8e-12 Score=87.19 Aligned_cols=63 Identities=29% Similarity=0.531 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++++++|++++.+++.++++++.+.++|+..++++.+|+.++...|+++||||||.++++|.
T Consensus 78 TtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 78 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSS
T ss_pred HHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhc
Confidence 789999999999999999999999999999999999999999888999999999999998775
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.26 E-value=7.4e-13 Score=83.12 Aligned_cols=62 Identities=37% Similarity=0.569 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r 64 (69)
|++|+++|++++.+++.++++++.+.+.|++++.++.+|+.+...+|++|||||+|.+.++|
T Consensus 58 T~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 58 TLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119 (268)
T ss_dssp HHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--
T ss_pred HHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999998876
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.21 E-value=3.9e-11 Score=86.08 Aligned_cols=64 Identities=78% Similarity=1.132 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++++++|++++.+++.++++++.+++.|+.++.++.+|+.+....|+++|+||+|.++++|+.
T Consensus 252 TtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 315 (806)
T 1ypw_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (806)
T ss_dssp HHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC
T ss_pred HHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc
Confidence 7899999999999999999999999999999999999999999999999999999999988764
No 29
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.11 E-value=1.9e-10 Score=71.73 Aligned_cols=63 Identities=29% Similarity=0.531 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++++++++.++.+++.+++.++.+.+.|+..+.++.+|+.+....|+++|+||+|.++++|.
T Consensus 63 Ttl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---
T ss_pred HHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC
Confidence 789999999999999999999999999999999999999999888899999999999987664
No 30
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.09 E-value=6.1e-11 Score=77.63 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhc-ccChH-HHHHHHHHHHH----HhcCCeEEEEccccccccccccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSK-LAGES-ESNLRKAFEEA----DKNSPSIIFIDELDAIAPKREKR 67 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~-~~ges-~~~l~~if~~a----~~~~p~iifiDEid~i~~~r~~~ 67 (69)
|++|+++|+.++.+|+.++++++... |+|++ ++.++.+|+.+ ....|+||||||+|.+.+.|++.
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~ 135 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNP 135 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccc
Confidence 78999999999999999999999855 88987 67788999886 44578999999999999886553
No 31
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.03 E-value=7.5e-10 Score=70.12 Aligned_cols=63 Identities=29% Similarity=0.531 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++++++++.++.+++.+++.++...+.|+..+.++.+|+.+....|+++|+||+|.++..+.
T Consensus 87 Ttl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 87 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--
T ss_pred HHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc
Confidence 789999999999999999999999999999999999999999888899999999999987654
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.01 E-value=1.4e-09 Score=69.10 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhC-------CcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLG-------AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~-------~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++|+++|+.++ .+++.++++++.+.++|.+++.++.+|+.+ .+++|||||+|.+++.++
T Consensus 81 T~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~ 147 (309)
T 3syl_A 81 TTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN 147 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-
T ss_pred HHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC
Confidence 789999999984 489999999999999999999999999887 578999999999987664
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.93 E-value=2.7e-09 Score=67.18 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccCh----HHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGE----SESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ge----s~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++|+++|++++.+|+.+++++. +.|. ....++.+|+.+....+++|||||+|.+++.+.
T Consensus 78 T~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 78 TALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp HHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred HHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 78999999999999999988753 3443 346789999999888899999999999976554
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.74 E-value=6.1e-08 Score=56.62 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=52.7
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhhh--cccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIMS--KLAGESESNLRKAFEEADKN-SPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~~--~~~ges~~~l~~if~~a~~~-~p~iifiDEid~i~~~r~ 65 (69)
|++++++++++ +.+++.+++..+.. .+.|..+..+++++..+... .|.+|||||+|.+.+.+.
T Consensus 57 T~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~ 132 (187)
T 2p65_A 57 TAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGA 132 (187)
T ss_dssp HHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSS
T ss_pred HHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccc
Confidence 68899999987 78999999988873 36677888899999888765 789999999999986543
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.71 E-value=5.8e-08 Score=56.62 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=51.4
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhh--hcccChHHHHHHHHHHHHHh-cCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~~~r 64 (69)
|++++++++++ +.+++.+++..+. ..+.|+.++.++++++.+.. ..|++|+|||+|.+.+.+
T Consensus 57 T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~ 131 (195)
T 1jbk_A 57 TAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 131 (195)
T ss_dssp HHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--
T ss_pred HHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccC
Confidence 78899999986 7899999999987 45778888899999987754 568999999999998654
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.67 E-value=4.2e-08 Score=70.46 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=42.8
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhh--hcccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEADKN-SPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~--~~~~ges~~~l~~if~~a~~~-~p~iifiDEid~i~~~r~ 65 (69)
|++++++|..+ +.+++.++++.+. .++.|+.+..++.+|+.+... .|+||||||+|.+.+.++
T Consensus 205 T~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~ 280 (854)
T 1qvr_A 205 TAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGK 280 (854)
T ss_dssp HHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------
T ss_pred HHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCC
Confidence 78999999998 8999999999997 568999999999999999875 799999999999986553
No 37
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.63 E-value=5e-08 Score=63.95 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhh-hcccChH-HHHHHHHHHHHH----hcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAD----KNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~-~~~~ges-~~~l~~if~~a~----~~~p~iifiDEid~i~~~r~ 65 (69)
|++|+++|+.++.+|+.++++.+. ..|.|+. +..+..+|..+. ...+++|||||+|.+.++|+
T Consensus 86 T~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~ 154 (376)
T 1um8_A 86 TLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 154 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred HHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC
Confidence 789999999999999999999876 4577775 556777776543 34789999999999988754
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.60 E-value=4.6e-08 Score=61.67 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhh-cccChH-HHHHHHHHHHH-----HhcCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMS-KLAGES-ESNLRKAFEEA-----DKNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~-~~~ges-~~~l~~if~~a-----~~~~p~iifiDEid~i~~~r 64 (69)
|++|+++++.++.+++.++++++.. .|+|.. +..++++|..+ ....+++|||||+|.+.+.+
T Consensus 64 T~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred HHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 7899999999999999999999876 577753 46678887743 12347999999999998765
No 39
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.60 E-value=1.1e-07 Score=67.20 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=53.6
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhh--hcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccccc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~--~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~~ 66 (69)
|++|++++..+ +.+++.++.+.+. .++.|+.++.++.+|+.+....+++|||||+|.+.++++.
T Consensus 221 T~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 296 (758)
T 1r6b_X 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA 296 (758)
T ss_dssp HHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS
T ss_pred HHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC
Confidence 78999999987 7788999888887 4689999999999999998888999999999999876543
No 40
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.55 E-value=4.8e-08 Score=74.79 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhC---CcEEEEchhh----hh--------hcccCh----HHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSLG---AFFFLINGPE----IM--------SKLAGE----SESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~~---~~~~~v~~~~----l~--------~~~~ge----s~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++|++++.+.. -|...++... +. ++|+++ +|+.|+.+|..|++..||+||+||+|+|+++
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 789999998774 3444444444 33 788999 9999999999999999999999999999998
Q ss_pred cc
Q psy3868 64 RE 65 (69)
Q Consensus 64 r~ 65 (69)
|+
T Consensus 1176 ~~ 1177 (1706)
T 3cmw_A 1176 AE 1177 (1706)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.53 E-value=3.9e-08 Score=67.92 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhh---------cccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMS---------KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~---------~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|++++++|+.++.++..++++.+.. +|+|.....+.+.|..+....| ++|+||+|.+.+++.
T Consensus 122 Ttlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~ 192 (543)
T 3m6a_A 122 TSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR 192 (543)
T ss_dssp HHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC----
T ss_pred HHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc
Confidence 7899999999999999998876544 6888888999999998876666 999999999988753
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.25 E-value=1.5e-06 Score=55.80 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=45.2
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++++++++++ +.+++.+++.++...+.+.........|.... ..+.+|||||+|.+..+
T Consensus 51 T~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~ 113 (324)
T 1l8q_A 51 THLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK 113 (324)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC
Confidence 78999999999 89999999999876666554433333343332 24899999999999764
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=1.3e-06 Score=56.53 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCC--cEEEEchhhhhhcccCh
Q psy3868 3 YRLTTLCRDSLGA--FFFLINGPEIMSKLAGE 32 (69)
Q Consensus 3 T~la~aia~~~~~--~~~~v~~~~l~~~~~ge 32 (69)
|++|++++++++. +++.+++..+.+.+.++
T Consensus 84 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 84 TAIAMGMAQALGPDTPFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp HHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCH
T ss_pred HHHHHHHHHHhcccCCcccccchhhhhcccch
Confidence 7899999999985 88899887765554444
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.23 E-value=2.4e-06 Score=57.97 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh----cCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~----~~p~iifiDEid~i~~~r 64 (69)
|++|+++++.++.+|+.+++... +.+.++++|+.+.. ..+.+|||||||.+....
T Consensus 64 TtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 64 TTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp HHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----
T ss_pred HHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH
Confidence 78999999999999999987543 46678888888764 468999999999997543
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=2.2e-07 Score=63.61 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHH-------HHHHHHHHH-----HhcCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESES-------NLRKAFEEA-----DKNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~-------~l~~if~~a-----~~~~p~iifiDEid~i~~~r 64 (69)
|++|+++|++++.+++.++++++.+.+..+..- .++.+|+.+ ...++++|||||+|.+....
T Consensus 91 Ttla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~ 164 (516)
T 1sxj_A 91 TTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD 164 (516)
T ss_dssp HHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh
Confidence 789999999999999999998875543222111 123344433 23578999999999997643
No 46
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.5e-06 Score=55.95 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=45.7
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhhh----------cc------cChHHHHHHHHHHHH--HhcCCeEEEE
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIMS----------KL------AGESESNLRKAFEEA--DKNSPSIIFI 54 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~~----------~~------~ges~~~l~~if~~a--~~~~p~iifi 54 (69)
|++++.+++++ +..++++||..+.+ .+ .|++...+++.|+.. ....++|+|+
T Consensus 59 T~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~l 138 (318)
T 3te6_A 59 FQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILI 138 (318)
T ss_dssp HHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEE
Confidence 78999999998 45788899865432 22 345678899999985 3567899999
Q ss_pred ccccccc
Q psy3868 55 DELDAIA 61 (69)
Q Consensus 55 DEid~i~ 61 (69)
||+|.+.
T Consensus 139 DE~d~l~ 145 (318)
T 3te6_A 139 QNPENLL 145 (318)
T ss_dssp ECCSSSC
T ss_pred ecHHHhh
Confidence 9999997
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.14 E-value=1.4e-06 Score=59.55 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhh-cccCh-HHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMS-KLAGE-SESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~-~~~ge-s~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++|+++|+.++.+|+.++++.+.+ +|+|+ .++.++++|+.++... ++||+|.+...
T Consensus 64 T~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~ 122 (444)
T 1g41_A 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRAR 122 (444)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC--
T ss_pred HHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhcc
Confidence 7899999999999999999999998 59995 8999999999987653 48888877543
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=4.5e-06 Score=56.32 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=43.9
Q ss_pred hHHHHHHHHHh-----CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSL-----GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~-----~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++++++++++ +.+++.+++.++...+.+.-.......|.......|.+|||||+|.+..+
T Consensus 144 TtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 144 THLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 78999999998 88999999998865554433322222343333337999999999999864
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.04 E-value=6.4e-06 Score=52.62 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhc-----CCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN-----SPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~-----~p~iifiDEid~i~ 61 (69)
|+++++++++++.+++++++++. ....+++.+...... .+.+|||||+|.+.
T Consensus 62 T~la~~la~~l~~~~~~i~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 62 TTVAKALCHDVNADMMFVNGSDC-------KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp HHHHHHHHHHTTEEEEEEETTTC-------CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred HHHHHHHHHHhCCCEEEEccccc-------CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 78999999999999999998774 255666666554332 67999999999986
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.97 E-value=8.2e-06 Score=57.71 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhc------------ccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSK------------LAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~------------~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++|+.++.+++.++++++..+ |+|..+. ..+....+...++||||||+|.+-+
T Consensus 502 T~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 502 TEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH
T ss_pred HHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH
Confidence 78999999999999999999988653 4443332 2234444556689999999998753
No 51
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.94 E-value=1.8e-05 Score=50.69 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|++++++++.+|+.++++.+. ....+...+.. ...+++|||||+|.+.+
T Consensus 69 T~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 69 TTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH
T ss_pred HHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH
Confidence 789999999999999999998762 34455555543 35689999999998864
No 52
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.92 E-value=2.4e-06 Score=49.43 Aligned_cols=50 Identities=4% Similarity=0.110 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++|+++++..+ +|+.++++++...+ .+.+|+.+ .+.+|||||+|.+.+.
T Consensus 41 t~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a---~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 41 ETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA---EGGVLYVGDIAQYSRN 90 (143)
T ss_dssp HHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT---TTSEEEEEECTTCCHH
T ss_pred HHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC---CCCeEEEeChHHCCHH
Confidence 689999999888 99999999885443 56677665 3689999999998653
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.91 E-value=8.1e-06 Score=55.38 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=37.4
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 55 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiD 55 (69)
|++|+++|..+ +.+++.++++ .+|.|+.+..++.+|+.++...|.|||||
T Consensus 215 T~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 215 TAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp HHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 78999999997 8899999988 78899999999999999998899999999
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.91 E-value=5.2e-06 Score=47.99 Aligned_cols=51 Identities=6% Similarity=-0.031 Sum_probs=39.2
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++|+++++.. +.+|+ ++++.+.+. ......|+.+ .+.+|||||+|.+.+.
T Consensus 38 t~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 38 MTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTRE 91 (145)
T ss_dssp HHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCHH
T ss_pred HHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCHH
Confidence 78999999987 67999 999887543 3345566665 4689999999998653
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.89 E-value=1.9e-05 Score=55.98 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=43.3
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++|..+ +.+|+.++++++...+.+. -..+++..+...+++|||||||.+.+
T Consensus 535 T~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~ 593 (758)
T 3pxi_A 535 TELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAHP 593 (758)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSCH
T ss_pred HHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccCH
Confidence 78999999998 6899999999998887765 22334444556779999999998753
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=9.1e-06 Score=57.67 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=37.8
Q ss_pred hHHHHHHHHHh----------CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEc
Q psy3868 3 YRLTTLCRDSL----------GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 55 (69)
Q Consensus 3 T~la~aia~~~----------~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiD 55 (69)
|++|+++|..+ +.+++.+++ ..+|.|+.+.+++.+|+.+....|+|||||
T Consensus 215 T~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 215 TAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp HHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 78999999997 889999988 677899999999999999999999999999
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.74 E-value=3.2e-05 Score=49.61 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.6
Q ss_pred hHHHHHHHHHh---------CCcEEEEchhhhhh------c----------ccChHH-HHHHHHHHHHHhc-CCeEEEEc
Q psy3868 3 YRLTTLCRDSL---------GAFFFLINGPEIMS------K----------LAGESE-SNLRKAFEEADKN-SPSIIFID 55 (69)
Q Consensus 3 T~la~aia~~~---------~~~~~~v~~~~l~~------~----------~~ges~-~~l~~if~~a~~~-~p~iifiD 55 (69)
|++++++++++ +.+++.+++....+ . ..|.+. ..++.+++..... +|++||||
T Consensus 58 T~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilD 137 (387)
T 2v1u_A 58 TAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLD 137 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc
Confidence 78899999988 88999999865321 1 123323 3356666665443 48999999
Q ss_pred cccccccc
Q psy3868 56 ELDAIAPK 63 (69)
Q Consensus 56 Eid~i~~~ 63 (69)
|+|.+...
T Consensus 138 Ei~~l~~~ 145 (387)
T 2v1u_A 138 EIDFLPKR 145 (387)
T ss_dssp TTTHHHHS
T ss_pred cHhhhccc
Confidence 99998765
No 58
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.70 E-value=7.4e-05 Score=47.36 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|++++++++.+++.++++.+. ....+...|..+ ...+.+|||||+|.+..
T Consensus 52 T~la~~i~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 52 TTLAHVIAHELGVNLRVTSGPAIE------KPGDLAAILANS-LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTCC------SHHHHHHHHTTT-CCTTCEEEETTTTSCCH
T ss_pred HHHHHHHHHHhCCCEEEEeccccC------ChHHHHHHHHHh-ccCCCEEEEECCccccc
Confidence 789999999999999999987762 233444444331 14689999999999864
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=4.7e-05 Score=49.13 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=41.8
Q ss_pred hHHHHHHHHHh-----------CCcEEEEchhhhh-h----------c-------ccChH-HHHHHHHHHHHHhcCCeEE
Q psy3868 3 YRLTTLCRDSL-----------GAFFFLINGPEIM-S----------K-------LAGES-ESNLRKAFEEADKNSPSII 52 (69)
Q Consensus 3 T~la~aia~~~-----------~~~~~~v~~~~l~-~----------~-------~~ges-~~~l~~if~~a~~~~p~ii 52 (69)
|++++++++++ +.+++.+++.... + . ..|.+ ...+..+++.+....+ +|
T Consensus 59 T~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vl 137 (384)
T 2qby_B 59 TFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-II 137 (384)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EE
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EE
Confidence 78899999987 9999999987643 1 1 11222 3345566665544444 99
Q ss_pred EEcccccccccc
Q psy3868 53 FIDELDAIAPKR 64 (69)
Q Consensus 53 fiDEid~i~~~r 64 (69)
||||+|.+...+
T Consensus 138 ilDEi~~l~~~~ 149 (384)
T 2qby_B 138 YLDEVDTLVKRR 149 (384)
T ss_dssp EEETTHHHHHST
T ss_pred EEECHHHhccCC
Confidence 999999997643
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.64 E-value=0.00014 Score=46.55 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=43.0
Q ss_pred hHHHHHHHHHh------CCcEEEEchhhhhh------c----------ccChH-HHHHHHHHHHHHhcC-CeEEEEcccc
Q psy3868 3 YRLTTLCRDSL------GAFFFLINGPEIMS------K----------LAGES-ESNLRKAFEEADKNS-PSIIFIDELD 58 (69)
Q Consensus 3 T~la~aia~~~------~~~~~~v~~~~l~~------~----------~~ges-~~~l~~if~~a~~~~-p~iifiDEid 58 (69)
|++++++++++ +.+++.+++..... . ..|.+ ....+.+++...... |++|+|||+|
T Consensus 59 Ttl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~ 138 (386)
T 2qby_A 59 TAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEID 138 (386)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 78999999988 88999999765321 1 12222 333566666665543 9999999999
Q ss_pred cccccc
Q psy3868 59 AIAPKR 64 (69)
Q Consensus 59 ~i~~~r 64 (69)
.+...+
T Consensus 139 ~l~~~~ 144 (386)
T 2qby_A 139 AFVKKY 144 (386)
T ss_dssp HHHHSS
T ss_pred hhhccC
Confidence 987543
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.45 E-value=0.00013 Score=52.47 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=38.8
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhc------------ccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSK------------LAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~------------~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++++.+ +.+|+.++++.+... |+|..+ ...+....+...+++|||||+|.+-+
T Consensus 602 T~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~ 674 (854)
T 1qvr_A 602 TELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP 674 (854)
T ss_dssp HHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCH
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH
Confidence 78999999999 789999999876543 223322 12344444455679999999998743
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.43 E-value=9.3e-05 Score=46.65 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=37.9
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhc-----cc-------ChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSK-----LA-------GESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~-----~~-------ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++++.+ +.+++.++++.+... ++ |.... ..+....+...+++|||||+|.+.+
T Consensus 61 t~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 61 TELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP 133 (311)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH
T ss_pred HHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH
Confidence 78999999998 567999998876322 11 11110 1233333445569999999998854
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.0023 Score=41.10 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=37.3
Q ss_pred hHHHHHHHHHh----CCcEEEEchhhhhh------c----------ccChH-HHHHHHHHHHHHh-cCCeEEEEcccccc
Q psy3868 3 YRLTTLCRDSL----GAFFFLINGPEIMS------K----------LAGES-ESNLRKAFEEADK-NSPSIIFIDELDAI 60 (69)
Q Consensus 3 T~la~aia~~~----~~~~~~v~~~~l~~------~----------~~ges-~~~l~~if~~a~~-~~p~iifiDEid~i 60 (69)
|++++++++++ +.+++.+++....+ . ..|.+ ....+.+.+.... ..|.+|+|||+|.+
T Consensus 58 Ttl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 58 TVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 78899999998 67889998754321 1 01222 2233333333333 45899999999988
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.10 E-value=0.0012 Score=42.76 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++++++|++++.++...+++.+. ....+..++.. ...+.|+||||+|.+.+
T Consensus 65 TTLa~~ia~~l~~~~~~~sg~~~~------~~~~l~~~~~~--~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 65 TTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTS--LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTCC------SHHHHHHHHHH--CCTTCEEEEETGGGCCH
T ss_pred HHHHHHHHHHhCCCEEEEechHhc------CHHHHHHHHHH--ccCCCEEEEcchhhcCH
Confidence 789999999999998887776542 23345555433 23578999999999865
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.09 E-value=0.0014 Score=40.62 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhC---CcEEEEchhhhhhc-----ccChHHH-------HHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLG---AFFFLINGPEIMSK-----LAGESES-------NLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~---~~~~~v~~~~l~~~-----~~ges~~-------~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++++.++ .+|+.++++.+... ..|.... .....|+. ..+.+|||||+|.+.+
T Consensus 43 t~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 43 ELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM 114 (265)
T ss_dssp HHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH
Confidence 789999999875 68999999876321 1111000 00112222 2468999999999864
No 66
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.0018 Score=38.01 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=35.3
Q ss_pred hHHHHHHHHHh-----CCcEEEEchhhhhhcccChHHHHHHHHHHHHH------hcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAD------KNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~-----~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~------~~~p~iifiDEid~i~~ 62 (69)
|++++++++++ +.+++.++++...+ ...++..+.... ...+.+|+|||+|.+.+
T Consensus 52 T~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 52 TATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp HHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred HHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 77889998876 45688887765421 223333333322 25689999999999864
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.88 E-value=0.00022 Score=45.82 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=36.2
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhc-----ccC--------hHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSK-----LAG--------ESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~-----~~g--------es~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++|+++++.. +.||+.++|+.+... .+| ... .....|+.+ .+.+|||||||.+..
T Consensus 39 t~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 39 ELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDISP 110 (304)
T ss_dssp HHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCCH
T ss_pred HHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCCH
Confidence 68999999965 578999998765321 111 111 122344444 357999999998864
No 68
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.84 E-value=0.0014 Score=43.36 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCc--EEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 3 YRLTTLCRDSLGAF--FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 3 T~la~aia~~~~~~--~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
|+|+.++|.+.|.+ |+.+...+.++.+..+.+..++.+++...+.. +|+|||++++...+.
T Consensus 137 TtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 137 TPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAG 199 (331)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC----
T ss_pred HHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccc
Confidence 67888888765544 44442233344444666777888888776654 999999999976543
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0015 Score=40.93 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=38.4
Q ss_pred hHHHHHHHHHh-----CCcEEEEchhhhhhcccChHHHHHHHHHHHHH-------hcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAD-------KNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~-----~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~-------~~~p~iifiDEid~i~~ 62 (69)
|++++++++++ +.+++.+++++.. +...++++++... ...+.+|+|||+|.+..
T Consensus 56 t~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 56 TTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp HHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred HHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 67899999886 4567888876531 2456666666654 23489999999999854
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.81 E-value=0.0013 Score=39.45 Aligned_cols=52 Identities=21% Similarity=0.110 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhC---CcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccccc
Q psy3868 3 YRLTTLCRDSLG---AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la~aia~~~~---~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r 64 (69)
|+++++++++++ .+++.++++++...+. +.++. -..|.+|+|||+|.+....
T Consensus 66 T~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 66 THLIHAACARANELERRSFYIPLGIHASIST--------ALLEG--LEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--------GGGTT--GGGSSEEEEETGGGGTTCH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHHHh--ccCCCEEEEeccccccCCH
Confidence 678888888775 7888899888755431 11111 1458999999999987643
No 71
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.76 E-value=0.0011 Score=39.39 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=35.7
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcccCh-HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~ge-s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
|++++++++++ +.+++.++++++...+.+. ....+.++++... .+.+|+|||++...
T Consensus 68 T~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 68 TYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 78899999888 6788889988876543211 0111233344333 34699999997754
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.70 E-value=0.0015 Score=38.02 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=33.7
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++++++++.. |...+.+++.++... +...+|.+|++||++.+..
T Consensus 50 TtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 50 SHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 67888898887 777888888777543 1123689999999998754
No 73
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.63 E-value=0.0033 Score=49.55 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=44.2
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhh----hhcccC------------hHHHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEI----MSKLAG------------ESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l----~~~~~g------------es~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|+||.+++.+. |..+..++.... ..+..| .+|+.++.++..+++.+|++|+|||++++.+.
T Consensus 1441 T~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1441 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhccc
Confidence 67787777765 334444554422 222233 56788999999999999999999999999985
Q ss_pred c
Q psy3868 64 R 64 (69)
Q Consensus 64 r 64 (69)
+
T Consensus 1521 ~ 1521 (2050)
T 3cmu_A 1521 A 1521 (2050)
T ss_dssp H
T ss_pred c
Confidence 4
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.49 E-value=0.00047 Score=47.55 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhCC--cEEEEc-----hhhhhhcccChHHHHHHHHHHHHHhc---CCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGA--FFFLIN-----GPEIMSKLAGESESNLRKAFEEADKN---SPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~--~~~~v~-----~~~l~~~~~ges~~~l~~if~~a~~~---~p~iifiDEid~i~~ 62 (69)
|++|+++|+.++. +|..++ ++++++.+.+..... ...|..+... .++|||||||+.+.+
T Consensus 55 T~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~ 123 (500)
T 3nbx_X 55 SLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP 123 (500)
T ss_dssp HHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH
Confidence 7899999998853 444433 356655554443222 1223322221 578999999987654
No 75
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.47 E-value=0.0047 Score=36.45 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHH----hcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEAD----KNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~----~~~p~iifiDEid~i~ 61 (69)
....++++++.+. ..+|.+|+|||+|.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~ 139 (250)
T 1njg_A 107 KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 139 (250)
T ss_dssp GHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC
T ss_pred cHHHHHHHHHHhhhchhcCCceEEEEECccccc
Confidence 3455677776653 2358999999999874
No 76
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0023 Score=40.73 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhC------CcEEEEchhhhhhcccChHHHHHHHHHHHHHh----------------cCCeEEEEcccccc
Q psy3868 3 YRLTTLCRDSLG------AFFFLINGPEIMSKLAGESESNLRKAFEEADK----------------NSPSIIFIDELDAI 60 (69)
Q Consensus 3 T~la~aia~~~~------~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~----------------~~p~iifiDEid~i 60 (69)
|+++++++++++ ..+..+++++.. +...+++.+..... ..+.+|||||+|.+
T Consensus 72 T~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 72 TSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS
T ss_pred HHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc
Confidence 788999998864 458888877641 12233333322211 24569999999998
Q ss_pred ccc
Q psy3868 61 APK 63 (69)
Q Consensus 61 ~~~ 63 (69)
.+.
T Consensus 146 ~~~ 148 (353)
T 1sxj_D 146 TAD 148 (353)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 77
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.25 E-value=0.0021 Score=37.63 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=34.6
Q ss_pred hHHHHHHHHHh----CCcEEEEchhhhhhcccChHHHH-HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSL----GAFFFLINGPEIMSKLAGESESN-LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~----~~~~~~v~~~~l~~~~~ges~~~-l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
|++++++++.+ |..++.++..++...+...-... ..++.+. -..|.+|++||++...
T Consensus 52 TtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 52 THLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER 113 (180)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc
Confidence 67888888876 66778888887754432111000 0112222 1368999999998643
No 78
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.14 E-value=0.002 Score=40.32 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=35.0
Q ss_pred hHHHHHHHHHh-----CCcEEEEchhhhhhcccChHHHHHHHHHHHH-H-hcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL-----GAFFFLINGPEIMSKLAGESESNLRKAFEEA-D-KNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~-----~~~~~~v~~~~l~~~~~ges~~~l~~if~~a-~-~~~p~iifiDEid~i~~ 62 (69)
|++++++++++ +.+++.+++++..+ .......+....... . ...+.+|+|||+|.+..
T Consensus 52 t~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 52 TATAIALARDLFGENWRDNFIEMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp HHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred HHHHHHHHHHhcCCcccCCeEEEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 78899999986 45688888876422 111112222222110 0 14589999999999854
No 79
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.012 Score=36.76 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhC-----CcEEEEchhhhhhcccChHHHHHHHHHHHHHh------cCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLG-----AFFFLINGPEIMSKLAGESESNLRKAFEEADK------NSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~-----~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~------~~p~iifiDEid~i~~ 62 (69)
|++++++++++. .+++.+++++..+ ...++..+..... ..+.+|+|||+|.+.+
T Consensus 60 T~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 60 TTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp HHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred HHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 788999998863 3577888765421 1223332222211 4588999999999854
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.84 E-value=0.0058 Score=38.96 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhCCcEEEEchh------hhhhcccChHHHHHHHHHHHHHhcC---CeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGP------EIMSKLAGESESNLRKAFEEADKNS---PSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~------~l~~~~~ges~~~l~~if~~a~~~~---p~iifiDEid~i~~~ 63 (69)
|++|+++|+.++.+++.+++. ++.+...-.... .-|. ...+ .+++||||+|.+.++
T Consensus 60 T~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 60 TLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPAK 124 (331)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCHH
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---CceE--eccCcccccEEEEEccccCCHH
Confidence 789999999999999988863 233221110000 0000 0112 379999999997653
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.03 Score=36.09 Aligned_cols=55 Identities=4% Similarity=0.080 Sum_probs=39.0
Q ss_pred hHHHHHHHHHh------CCcEEEEchhhhhhcccChHHHHHHHHHHHHHhc----CCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL------GAFFFLINGPEIMSKLAGESESNLRKAFEEADKN----SPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~------~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~----~p~iifiDEid~i~~ 62 (69)
|++++++|+.+ ...++.++++. + ..+...+|++.+.+... ...|++|||+|.+-.
T Consensus 32 tt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 32 REVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp HHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH
T ss_pred HHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH
Confidence 67889998874 35777887652 0 12456788898888542 247999999999854
No 82
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.60 E-value=0.011 Score=37.52 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.3
Q ss_pred CCeEEEEccccccccc
Q psy3868 48 SPSIIFIDELDAIAPK 63 (69)
Q Consensus 48 ~p~iifiDEid~i~~~ 63 (69)
.+.+|||||+|.+.+.
T Consensus 144 ~~~vl~iDEi~~l~~~ 159 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH 159 (350)
T ss_dssp TTEEEEETTGGGSCHH
T ss_pred CCCEEEEeChhhCCHH
Confidence 4789999999998654
No 83
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.58 E-value=0.0098 Score=38.03 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHh----cCCeEEEEcccccccc
Q psy3868 35 SNLRKAFEEADK----NSPSIIFIDELDAIAP 62 (69)
Q Consensus 35 ~~l~~if~~a~~----~~p~iifiDEid~i~~ 62 (69)
..++++++.+.. ..+.+|+|||+|.+..
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 102 EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 (373)
T ss_dssp SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhccccCCeEEEEEECcchhcH
Confidence 346677777643 3578999999998853
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.54 E-value=0.026 Score=36.42 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=35.7
Q ss_pred hHHHHHHHHHh---------CCcEEEEchhh------hhhcc----------cChH-HHHHHHHHHHHH-hcCCeEEEEc
Q psy3868 3 YRLTTLCRDSL---------GAFFFLINGPE------IMSKL----------AGES-ESNLRKAFEEAD-KNSPSIIFID 55 (69)
Q Consensus 3 T~la~aia~~~---------~~~~~~v~~~~------l~~~~----------~ges-~~~l~~if~~a~-~~~p~iifiD 55 (69)
|++++.++++. +.+++.+++.. +.... .|.+ ...++.+.+... ..+|.+|+||
T Consensus 66 T~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlD 145 (412)
T 1w5s_A 66 TTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILD 145 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 67888888776 56778888632 11110 1222 222334443333 3569999999
Q ss_pred ccccccc
Q psy3868 56 ELDAIAP 62 (69)
Q Consensus 56 Eid~i~~ 62 (69)
|+|.+..
T Consensus 146 e~~~l~~ 152 (412)
T 1w5s_A 146 EFQSMLS 152 (412)
T ss_dssp STHHHHS
T ss_pred CHHHHhh
Confidence 9999865
No 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.52 E-value=0.032 Score=35.08 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHHHhc--CCeEEEEcccccccc
Q psy3868 37 LRKAFEEADKN--SPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~~--~p~iifiDEid~i~~ 62 (69)
+.++++...+. +|.+|+|||++.+..
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 55566555443 499999999999865
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.38 E-value=0.0085 Score=38.53 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhC----CcEEEEchhhhhhcccCh-HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLG----AFFFLINGPEIMSKLAGE-SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~----~~~~~v~~~~l~~~~~ge-s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
|++++++++++. .++..+++++++..+.+. ....+.+.++.. ..+.+|+|||++...
T Consensus 166 T~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 166 SYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC--
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 778888888654 788889988876543321 111222333332 245799999997654
No 87
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.14 E-value=0.056 Score=34.79 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCCc------------------------EEEEchhhhhhcccChHHHHHHHHHHHHHh----cCCeEEEE
Q psy3868 3 YRLTTLCRDSLGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFI 54 (69)
Q Consensus 3 T~la~aia~~~~~~------------------------~~~v~~~~l~~~~~ges~~~l~~if~~a~~----~~p~iifi 54 (69)
|++|+++|+.+.++ ++.+++.+- ..+.+...++++.+.+.. ..+.|++|
T Consensus 38 t~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviI 114 (334)
T 1a5t_A 38 DALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWV 114 (334)
T ss_dssp HHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEE
Confidence 67899999888643 334433210 011245678888888753 34789999
Q ss_pred cccccccc
Q psy3868 55 DELDAIAP 62 (69)
Q Consensus 55 DEid~i~~ 62 (69)
||+|.+..
T Consensus 115 dead~l~~ 122 (334)
T 1a5t_A 115 TDAALLTD 122 (334)
T ss_dssp SCGGGBCH
T ss_pred CchhhcCH
Confidence 99999854
No 88
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.84 E-value=0.013 Score=35.80 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.0
Q ss_pred hcCCeEEEEcccccccccc
Q psy3868 46 KNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 46 ~~~p~iifiDEid~i~~~r 64 (69)
...+++|+|||++.+.+.|
T Consensus 85 ~~~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp GGTTCEEEETTGGGTSBCC
T ss_pred ccCceEEEEEChhhhccCc
Confidence 3568999999999998766
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.70 E-value=0.04 Score=44.57 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
|.+++++|+.+|.+++.++|++-+ ..+.+.++|..+... ++.+++||++.+-
T Consensus 659 Te~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~-Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 659 TETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQI-GAWGCFDEFNRLD 710 (2695)
T ss_dssp HHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHH-TCEEEEETTTSSC
T ss_pred HHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhc-CCEeeehhhhhcC
Confidence 789999999999999999998764 356778899888554 6899999998864
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.33 E-value=0.23 Score=31.08 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=13.5
Q ss_pred cCCeEEEEcccccccc
Q psy3868 47 NSPSIIFIDELDAIAP 62 (69)
Q Consensus 47 ~~p~iifiDEid~i~~ 62 (69)
.+|.+|+|||++.+..
T Consensus 127 ~~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 127 LGEFIVAFDEAQYLRF 142 (350)
T ss_dssp HSCEEEEEETGGGGGG
T ss_pred cCCEEEEEeCHHHHhc
Confidence 3599999999999864
No 91
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.94 E-value=0.13 Score=32.87 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhC-----CcEEEEchhhhhhcccChHHHHHHHHHHHHHh------cCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLG-----AFFFLINGPEIMSKLAGESESNLRKAFEEADK------NSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~-----~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~------~~p~iifiDEid~i~~ 62 (69)
|++++++|+.+. ..+..+++++. .| ...+++....... ..+.+++|||+|.+..
T Consensus 60 Ttla~~la~~l~~~~~~~~~~~~~~~~~----~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 60 TSTIVALAREIYGKNYSNMVLELNASDD----RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp HHHHHHHHHHHHTTSHHHHEEEECTTSC----CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHcCCCccceEEEEcCccc----cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence 789999999864 24677777652 12 3445554443321 2378999999998753
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.79 E-value=0.16 Score=33.54 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhC---CcEEEEchhhhhhc-------------ccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLG---AFFFLINGPEIMSK-------------LAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~---~~~~~v~~~~l~~~-------------~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+++|+++....+ .||+.++|+.+-.. |.|... .-...|+.| ....||+|||+.+-.
T Consensus 174 ~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a---~~gtlfldei~~l~~ 245 (387)
T 1ny5_A 174 EVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELA---DGGTLFLDEIGELSL 245 (387)
T ss_dssp HHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHT---TTSEEEEESGGGCCH
T ss_pred HHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeC---CCcEEEEcChhhCCH
Confidence 567888877654 69999999876221 111100 011233333 357999999998853
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.34 E-value=0.23 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=35.8
Q ss_pred hHHH-HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHH---------------hcCCeEEEEcccccccccc
Q psy3868 3 YRLT-TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEAD---------------KNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 3 T~la-~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~---------------~~~p~iifiDEid~i~~~r 64 (69)
|++| +.+++..+.+++.++.+... +...+.+.++..- ..+++||||||+|.-...+
T Consensus 1281 T~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~ 1352 (2695)
T 4akg_A 1281 TMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDK 1352 (2695)
T ss_dssp HHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCS
T ss_pred HHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccc
Confidence 6778 55666557788888876653 2344555555431 1235799999999765554
No 94
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.33 Score=30.79 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=12.0
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
.|.++++||+|.+-
T Consensus 134 ~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 134 RYKCVIINEANSLT 147 (354)
T ss_dssp CCEEEEEECTTSSC
T ss_pred CCeEEEEeCccccC
Confidence 67899999999864
No 95
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.64 E-value=0.21 Score=32.78 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCC--cEEEEchhhhhhcccChHHHHH---------------HHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGA--FFFLINGPEIMSKLAGESESNL---------------RKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~--~~~~v~~~~l~~~~~ges~~~l---------------~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+.+|+++....+. +|+.+||+.+-... .+..+ .-.|+.| ....||+|||+.+-.
T Consensus 166 e~lAr~ih~~s~r~~~fv~vnc~~~~~~~---~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~ 236 (368)
T 3dzd_A 166 EIVARLIHRYSGRKGAFVDLNCASIPQEL---AESELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELDQ 236 (368)
T ss_dssp HHHHHHHHHHHCCCSCEEEEESSSSCTTT---HHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSCH
T ss_pred HHHHHHHHHhccccCCcEEEEcccCChHH---HHHHhcCccccccCCcccccCChHhhc---CCCeEEecChhhCCH
Confidence 4678888777654 39999998762110 01110 1134443 346899999998854
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.17 E-value=0.011 Score=41.29 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhCCcEEEE----chhhhhhcccChHHHH----HHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLI----NGPEIMSKLAGESESN----LRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v----~~~~l~~~~~ges~~~----l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
|++|+++|+.++..++.. ++..+........... -...+..| .+.++||||+|.+.+.
T Consensus 341 T~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~ 406 (595)
T 3f9v_A 341 SQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDE 406 (595)
T ss_dssp HHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSH
T ss_pred HHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCCHh
Confidence 789999999988766553 3333332222111000 00012222 4589999999998653
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.72 E-value=0.25 Score=39.39 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=40.6
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhcc----cC--------hHHHHHHHHHHHHHh----cCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKL----AG--------ESESNLRKAFEEADK----NSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~----~g--------es~~~l~~if~~a~~----~~p~iifiDEid~i~~ 62 (69)
|.|+..+|... +.++++++..+...++ .| .++.++..+++.+++ ..|++|+||.+..+.+
T Consensus 746 TtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 746 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 56677666655 3468888887655543 33 223345666666654 6899999999999986
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.44 E-value=2.2 Score=28.13 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=16.2
Q ss_pred HHHhcCCeEEEEcccccccc
Q psy3868 43 EADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 43 ~a~~~~p~iifiDEid~i~~ 62 (69)
..+...+.+|+||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 33456799999999999985
No 99
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.05 E-value=2.7 Score=27.38 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 35 SNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 35 ~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
..+..+...+++..|.+|+||++.++.+
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 3333333344456799999999999985
No 100
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.22 E-value=1.3 Score=30.21 Aligned_cols=15 Identities=53% Similarity=0.888 Sum_probs=13.1
Q ss_pred eEEEEcccccccccc
Q psy3868 50 SIIFIDELDAIAPKR 64 (69)
Q Consensus 50 ~iifiDEid~i~~~r 64 (69)
.++|+||+|.++.+.
T Consensus 252 ~il~~DEidki~~~~ 266 (444)
T 1g41_A 252 GIVFIDEIDKICKKG 266 (444)
T ss_dssp CEEEEETGGGGSCCS
T ss_pred CeeeHHHHHHHhhcc
Confidence 689999999999764
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.57 E-value=3.8 Score=23.10 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEI 25 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l 25 (69)
|++++.++..++.+++.++...+
T Consensus 17 ST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 17 SGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp HHHHHHHHHHSSSCEEEEEHHHH
T ss_pred HHHHHHHHHhcCCCeEEeccchH
Confidence 78999999999999888766544
No 102
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.50 E-value=4.4 Score=24.60 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.6
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+|+|||+|.+..
T Consensus 192 ~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 192 RFMLLIFDEVHHLPA 206 (237)
T ss_dssp TCSEEEEECSSCCCT
T ss_pred cCCEEEEECCccCCC
Confidence 478999999999854
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.52 E-value=1.4 Score=36.70 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
|.+++.+|+.+|.+++.++|++-+ ..+.+.++|.-+-. ..+-..+||++.+-
T Consensus 618 Tet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~-~GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 618 TETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQ-CGAWGCFDEFNRLE 669 (3245)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHH-HTCEEEEETTTSSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhh-cCcEEEehhhhcCC
Confidence 678999999999999999997643 45677888888755 47778899998863
No 104
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.82 E-value=1.5 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=36.0
Q ss_pred hhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccccccc
Q psy3868 24 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 24 ~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~~r~ 65 (69)
+++-.++...|+.+..+...+++.+|.+|+||.+.++.++.+
T Consensus 1485 ~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1485 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 1526 (1706)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTT
T ss_pred HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcccc
Confidence 344447777899999999999999999999999999998764
No 105
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=82.35 E-value=5.9 Score=23.61 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEE
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSII 52 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~ii 52 (69)
+|.+...+|.+.+.|++.++...+ ........+.++...+...+|
T Consensus 88 GT~lT~~~a~~~~KP~l~i~l~~~------~~~~~~~~v~~wl~~~~i~vL 132 (158)
T 3imk_A 88 GSALTEFFAEQYKKPCLHIDLDRI------SIEDAATLINSWTVSHHIQVL 132 (158)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTTS------CHHHHHHHHHHHHHHTTCCEE
T ss_pred chHHHHHHHHHhCCCEEEEecccc------cccchHHHHHHHHHHCCceEE
Confidence 588899999999999999988764 135678888899988887777
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.06 E-value=4.2 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=12.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.|.+|+|||+..+..
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 599999999998854
No 107
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=75.40 E-value=8.1 Score=22.11 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=34.9
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcC--CeEEEEccccccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS--PSIIFIDELDAIAPK 63 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~--p~iifiDEid~i~~~ 63 (69)
.+..|.+.|+.+..+=...=.|....+.-..+.++.+.++... ..+|++.++|.|++.
T Consensus 31 l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~ 90 (167)
T 3guv_A 31 MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN 90 (167)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSS
T ss_pred HHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCC
Confidence 3455666677654321111012211122356888888887766 688999999999875
No 108
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.34 E-value=12 Score=24.58 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+..+..+-...+...|.+++||.+-.+.+
T Consensus 125 e~~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 125 EQALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 33344333334457899999999999886
No 109
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=75.16 E-value=2.2 Score=23.52 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=16.2
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy3868 42 EEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 42 ~~a~~~~p~iifiDEid~i~~ 62 (69)
+.++..+|.++|+||=-.+..
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~~ 90 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEILE 90 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEEE
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 346689999999999766644
No 110
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=75.12 E-value=1.8 Score=23.79 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=15.8
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy3868 42 EEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 42 ~~a~~~~p~iifiDEid~i~~ 62 (69)
+.++.++|.++|+||=-.+..
T Consensus 72 ~e~~~~~P~vV~vd~~N~i~~ 92 (96)
T 1vc3_B 72 EEARNLKPTVVLVDERNRILE 92 (96)
T ss_dssp HHHTTCCCEEEEECTTCCEEE
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 346688999999999665543
No 111
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=74.87 E-value=3.1 Score=24.50 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccC
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~g 31 (69)
.|++|++.+-+++++.|+...-++.|.|
T Consensus 66 kLveAlC~E~~I~lIkVdd~kkLgew~G 93 (146)
T 3cg6_A 66 TLIQAFCCENDIDIVRVGDVQRLAAIVG 93 (146)
T ss_dssp HHHHHHHHHTTCEEEEECCHHHHHHHC-
T ss_pred HHHHHHHhhcCCCeEEeCchhHHHHHhC
Confidence 5899999999999999999888899988
No 112
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=74.06 E-value=2.4 Score=23.56 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=15.1
Q ss_pred HHHHhcCCeEEEEccccccc
Q psy3868 42 EEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 42 ~~a~~~~p~iifiDEid~i~ 61 (69)
+.++..+|.++|+||=-.+-
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCcEE
Confidence 34667899999999955544
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=72.33 E-value=5.3 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCe--EEEEccccccc
Q psy3868 36 NLRKAFEEADKNSPS--IIFIDELDAIA 61 (69)
Q Consensus 36 ~l~~if~~a~~~~p~--iifiDEid~i~ 61 (69)
..+.+.+.+....|. +|++||...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 109 LVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 344445555556888 99999999875
No 114
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=70.93 E-value=19 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=19.0
Q ss_pred HHHHHHHH-HHhcCCeEEEEcccccccc
Q psy3868 36 NLRKAFEE-ADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 36 ~l~~if~~-a~~~~p~iifiDEid~i~~ 62 (69)
.+.++.+. .+...+.+|+||.+..+.+
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 33444433 3457899999999999985
No 115
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=69.33 E-value=4.5 Score=24.35 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~g 31 (69)
..|++|++.+-+++++.|+...-++.|.|
T Consensus 86 ~kLVeAlC~E~~I~LIkV~d~kkLgew~G 114 (167)
T 3ffm_A 86 FTLIQAFCCENDIDIVRVGDVQRLAAIVG 114 (167)
T ss_dssp HHHHHHHHHHTTCEEEEESCHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCeEEeCCcchHHHHhC
Confidence 35899999999999999999888888888
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.87 E-value=9.5 Score=24.19 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=19.5
Q ss_pred HHHHHHHHHh-cCCeEEEEcccccccc
Q psy3868 37 LRKAFEEADK-NSPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~-~~p~iifiDEid~i~~ 62 (69)
+..+.+..++ ..+.+|+||.+..+..
T Consensus 191 l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 191 VDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 4455555556 7899999999999864
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=67.19 E-value=7.7 Score=22.80 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCeEEEEccccccccc
Q psy3868 38 RKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 38 ~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
..+.+......|.+|+|||+..+...
T Consensus 109 ~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 109 YQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHhcCCceEEEEeCchHHHHH
Confidence 33445555578999999999988643
No 118
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=67.08 E-value=7.2 Score=23.07 Aligned_cols=25 Identities=4% Similarity=0.052 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhCCcEEEEchhhhh
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPEIM 26 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~l~ 26 (69)
++.+|+.+|.+.+.|+|.-..+++.
T Consensus 100 a~rlAkiLarR~~~P~YVg~S~~~s 124 (151)
T 2z5b_A 100 ARHMATIISERFNRPCYVTWSSLPS 124 (151)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEECTT
T ss_pred HHHHHHHHHHHhCCCeEEEeecccc
Confidence 6789999999999999876665554
No 119
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.45 E-value=21 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=19.0
Q ss_pred HHHHHHHHHh--cCCeEEEEcccccccc
Q psy3868 37 LRKAFEEADK--NSPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~--~~p~iifiDEid~i~~ 62 (69)
+..+.+..++ ..+.+|+||.+..+..
T Consensus 206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 206 LDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 3344455555 6799999999999874
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.45 E-value=21 Score=21.60 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhCCcEEEEchhhh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEI 25 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l 25 (69)
|++++.++..++.+++.+++..+
T Consensus 46 STla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 46 TTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHhcCCCcEEEecHHH
Confidence 68999999999876777787766
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=63.01 E-value=6.8 Score=24.03 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHh----cCCeEEEEccccccc
Q psy3868 38 RKAFEEADK----NSPSIIFIDELDAIA 61 (69)
Q Consensus 38 ~~if~~a~~----~~p~iifiDEid~i~ 61 (69)
.++++.+++ ..+.+|+|||+..+-
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGSC
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccCc
Confidence 356666654 358899999998653
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=62.57 E-value=11 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.6
Q ss_pred HhcCCeEEEEcccc
Q psy3868 45 DKNSPSIIFIDELD 58 (69)
Q Consensus 45 ~~~~p~iifiDEid 58 (69)
-...|.++++||++
T Consensus 96 l~~~p~llilDEig 109 (178)
T 1ye8_A 96 KKDRRKVIIIDEIG 109 (178)
T ss_dssp HHCTTCEEEECCCS
T ss_pred cccCCCEEEEeCCC
Confidence 45789999999964
No 123
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=62.08 E-value=4.7 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.2
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy3868 42 EEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 42 ~~a~~~~p~iifiDEid~i~~ 62 (69)
+.++..+|.++|+||=..+..
T Consensus 113 ~E~~~~~P~VV~vd~~N~i~~ 133 (143)
T 1pqh_A 113 EEARTWRPNVAYFEGDNEMKR 133 (143)
T ss_dssp HHHTTCCCEEEEEETTTEECC
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 346678999999999766654
No 124
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=61.31 E-value=11 Score=24.97 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
|++++++++..+..++.++++.- .....+.. ..+..++|+||++.++.
T Consensus 183 STl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~------~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 183 TTLAAALLELCGGKALNVNLPLD------RLNFELGV------AIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHHHHCCEEECCSSCTT------THHHHHGG------GTTCSCEEETTCCCSTT
T ss_pred HHHHHHHHhhcCCcEEEEeccch------hHHHHHHH------hcchhHHHHHHHHHHHH
Confidence 68899999998877666443321 00111222 23557789999999886
No 125
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.89 E-value=5.4 Score=22.38 Aligned_cols=18 Identities=11% Similarity=-0.190 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|..+|.+++..
T Consensus 21 STva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 21 SSLAQELGLALKLEVLDT 38 (168)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHhCCCEEEC
Confidence 789999999999998764
No 126
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=59.42 E-value=5 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy3868 42 EEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 42 ~~a~~~~p~iifiDEid~i~~ 62 (69)
+.++..+|.++|+||=..+..
T Consensus 96 ~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 96 ARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp HHHHSCCCEEEECCTTCC---
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 346688999999999766643
No 127
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.39 E-value=5.9 Score=22.43 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|..++.+++..
T Consensus 18 sTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 18 STLARALAKDLDLVFLDS 35 (175)
T ss_dssp HHHHHHHHHHHTCEEEEH
T ss_pred HHHHHHHHHHcCCCEEcc
Confidence 789999999999988653
No 128
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=59.16 E-value=7 Score=23.22 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhCCcEEE
Q psy3868 2 SYRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~ 19 (69)
.|++++.+|..+|.+|+.
T Consensus 19 k~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 19 GHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp HHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHHHhCcCEEC
Confidence 478999999999999874
No 129
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=58.77 E-value=9.7 Score=22.84 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHH
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEA 44 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a 44 (69)
..-++.+|.+.+++|+++|+-+ ..+|.++|+..
T Consensus 138 ~~e~~~~a~~~~~~~~e~SAkt---------g~nV~e~F~~i 170 (216)
T 4dkx_A 138 IEEGERKAKELNVMFIETSAKA---------GYNVKQLFRRV 170 (216)
T ss_dssp HHHHHHHHHHHTCEEEEEBTTT---------TBSHHHHHHHH
T ss_pred HHHHhhHHHHhCCeeEEEeCCC---------CcCHHHHHHHH
Confidence 3457789999999999997742 23566777765
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.18 E-value=6.4 Score=22.32 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccC
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~g 31 (69)
|++++.+|..+|.+++.. .++.....|
T Consensus 19 st~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 19 TSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp HHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 789999999999988654 444444444
No 131
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.01 E-value=12 Score=24.14 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=28.3
Q ss_pred CcEEEEchhhhhhcccChHH------HHHHHHHHHHHh--cCCeEEEEcccccccc
Q psy3868 15 AFFFLINGPEIMSKLAGESE------SNLRKAFEEADK--NSPSIIFIDELDAIAP 62 (69)
Q Consensus 15 ~~~~~v~~~~l~~~~~ges~------~~l~~if~~a~~--~~p~iifiDEid~i~~ 62 (69)
.+++.++-+.+... .+.. ..+..+|..+.. ..|.++++||++.+.+
T Consensus 223 ~~~vv~dl~~l~~~--~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 223 SDFIVFDVHDLQNA--EDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVD 276 (392)
T ss_dssp SSEEEEECGGGTTS--CHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCC
T ss_pred CCEEEEEchhhhcC--CHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhC
Confidence 35566666666431 1111 134555666544 4689999999999986
No 132
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=56.92 E-value=19 Score=19.86 Aligned_cols=31 Identities=6% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~~r 64 (69)
-..+.++.+.+++....+|++.++|.|+++.
T Consensus 57 Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~~ 87 (138)
T 3bvp_A 57 RPAMQRLINDIENKAFDTVLVYKLDRLSRSV 87 (138)
T ss_dssp CHHHHHHHHGGGGTSCSEEEESSHHHHCSCH
T ss_pred CHHHHHHHHHHHhCCCCEEEEEeCCcccccH
Confidence 3567888888877767899999999998753
No 133
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=56.70 E-value=3.9 Score=23.59 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=8.3
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+|++||+|.+..
T Consensus 162 ~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 162 DFSLIIIDECHHTNK 176 (216)
T ss_dssp GCSEEEETTC-----
T ss_pred cccEEEEECchhhcc
Confidence 347899999999853
No 134
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=56.45 E-value=12 Score=20.08 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=29.9
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDE 56 (69)
+.+..+.+..-+.+--+--++...|+..+.+++.-+..+...-.|.|.||
T Consensus 44 ~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DE 93 (98)
T 1iv0_A 44 LDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDE 93 (98)
T ss_dssp HHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34556667666666554444455566555566555554443457888898
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.52 E-value=7.9 Score=21.95 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|++++..
T Consensus 16 sT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 16 STIGRRLAKALGVGLLDT 33 (184)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHcCCCEEeC
Confidence 789999999999988654
No 136
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=54.26 E-value=15 Score=21.59 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
.+.+........|.++++||.-+..
T Consensus 124 ~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 124 LRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEccHHHHH
Confidence 4444445556789999999987765
No 137
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=53.58 E-value=58 Score=23.20 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=27.9
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhhhhccc-------ChHHHHHHHHHHHH
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEIMSKLA-------GESESNLRKAFEEA 44 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l~~~~~-------ges~~~l~~if~~a 44 (69)
|+++++++..+ |.+++.++...+-.... .+.+..++++.+.+
T Consensus 66 STlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva 117 (630)
T 1x6v_B 66 TTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVA 117 (630)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHH
Confidence 78999999999 99999998765532211 12345566665444
No 138
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=52.90 E-value=3.4 Score=24.52 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.1
Q ss_pred hcCCeEEEEcccccc
Q psy3868 46 KNSPSIIFIDELDAI 60 (69)
Q Consensus 46 ~~~p~iifiDEid~i 60 (69)
...|.++++||++.+
T Consensus 103 ~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKM 117 (189)
T ss_dssp SSCCCCEEECCCSTT
T ss_pred ccCCCEEEEeCCCcc
Confidence 457899999997655
No 139
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.71 E-value=8.2 Score=26.73 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=12.0
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
.+.+|||||+|.+.
T Consensus 201 ~~gvL~LDEi~~l~ 214 (604)
T 3k1j_A 201 HKGVLFIDEIATLS 214 (604)
T ss_dssp TTSEEEETTGGGSC
T ss_pred CCCEEEEechhhCC
Confidence 56799999999974
No 140
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.52 E-value=6.9 Score=25.16 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=14.6
Q ss_pred HHHHHhcCCeEEEEccccccc
Q psy3868 41 FEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 41 f~~a~~~~p~iifiDEid~i~ 61 (69)
++......-..|++||+|.+.
T Consensus 132 l~~~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 132 REKLSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHTTCCCSEEEESCHHHHH
T ss_pred HHHhccccccEEEEeChHhhh
Confidence 333434567899999998664
No 141
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=52.29 E-value=9.6 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhCCcEEE
Q psy3868 2 SYRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~ 19 (69)
.|++++.+|..+|.+|+.
T Consensus 27 k~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 27 GRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp HHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHcCCcEEc
Confidence 478999999999999865
No 142
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.60 E-value=17 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 26 STva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 26 STVCEILKNKYGAHVVNV 43 (192)
T ss_dssp HHHHHHHHHHHCCEEEEH
T ss_pred HHHHHHHHHhcCCEEEEC
Confidence 678999999889888653
No 143
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=50.83 E-value=40 Score=20.57 Aligned_cols=51 Identities=4% Similarity=-0.045 Sum_probs=32.7
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
++..|.+.|.|++.+++.++-+ .+.-=.++.+..++.+|.++++=-.-.+.
T Consensus 44 v~~~A~~~gIp~~~~~~~~~~~-----r~~~d~~~~~~l~~~~~Dliv~agy~~Il 94 (211)
T 3p9x_A 44 VVERVKVHEIPVCALDPKTYPS-----KEAYEIEVVQQLKEKQIDFVVLAGYMRLV 94 (211)
T ss_dssp HHHHHHTTTCCEEECCGGGSSS-----HHHHHHHHHHHHHHTTCCEEEESSCCSCC
T ss_pred HHHHHHHcCCCEEEeChhhcCc-----hhhhHHHHHHHHHhcCCCEEEEeCchhhc
Confidence 5677889999999888766522 11112345566677889888875444333
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=50.73 E-value=21 Score=20.87 Aligned_cols=25 Identities=4% Similarity=0.115 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+..+-+..++..|.++++|++..+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred HHHHHHHHHHhCCCEEEECCchHhh
Confidence 3444444455689999999999886
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=50.06 E-value=17 Score=22.41 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHhcCCeEEEEccccccc
Q psy3868 44 ADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 44 a~~~~p~iifiDEid~i~ 61 (69)
+....|.+|++||.-.+.
T Consensus 143 ~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 143 RSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHTTCCSEEEEEEEC---
T ss_pred HHhcCCCEEEEcCccccC
Confidence 355789999999999865
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=49.81 E-value=10 Score=21.97 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhCCcEEEEc
Q psy3868 3 YRLTTLCRDSLGAFFFLIN 21 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~ 21 (69)
|++++.++..++.+++..+
T Consensus 39 sTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 39 TTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp HHHHHHHHHHHTCCEEEHH
T ss_pred HHHHHHHHHHcCCCEEcch
Confidence 7899999999999986543
No 147
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=49.50 E-value=35 Score=20.87 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
...|.+.|.|++.++..++- + .++.+..++.+|.++++=-.-.+
T Consensus 51 l~~A~~~gIp~~~~~~~~~~------~----~~~~~~L~~~~~Dlivlagy~~I 94 (215)
T 3kcq_A 51 LLIAQSYGIPTFVVKRKPLD------I----EHISTVLREHDVDLVCLAGFMSI 94 (215)
T ss_dssp HHHHHHTTCCEEECCBTTBC------H----HHHHHHHHHTTCSEEEESSCCSC
T ss_pred HHHHHHcCCCEEEeCcccCC------h----HHHHHHHHHhCCCEEEEeCCceE
Confidence 35688899999988765541 1 34566666788888877544333
No 148
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=48.97 E-value=17 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid 58 (69)
..+++.+.+..++..|.||.+-|++
T Consensus 20 ~~r~~~i~~~i~~~~pDIi~LQEv~ 44 (250)
T 4f1h_A 20 ADRARGLCSYLALYTPDVVFLQELI 44 (250)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4556778888888899999999985
No 149
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=48.84 E-value=35 Score=19.37 Aligned_cols=51 Identities=12% Similarity=-0.034 Sum_probs=35.8
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh-cCCeEEEEccc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPSIIFIDEL 57 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~-~~p~iifiDEi 57 (69)
..+..+.+..-+.|--+--++...|+..+.+++.-+..++ ..-.|.|.||-
T Consensus 46 ~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 46 ERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp HHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4566677777777765555566677778887777766644 35678999984
No 150
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=48.67 E-value=5.9 Score=22.81 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|++||+|.+..
T Consensus 146 ~~~~lViDEah~~~~ 160 (206)
T 1vec_A 146 HVQMIVLDEADKLLS 160 (206)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhHh
Confidence 457899999998764
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.36 E-value=33 Score=18.94 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
|++++.++..++.+++ +...+..
T Consensus 18 STl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 18 STIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp HHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred HHHHHHHHHHhCCCEE--eccHHHH
Confidence 6899999999998665 4444443
No 152
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=47.04 E-value=18 Score=15.81 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=16.9
Q ss_pred cccChHHHHHHHHHHHHHhc
Q psy3868 28 KLAGESESNLRKAFEEADKN 47 (69)
Q Consensus 28 ~~~ges~~~l~~if~~a~~~ 47 (69)
-|+|.+...++++=+.|++.
T Consensus 8 iwvggtpeelkklkeeakka 27 (36)
T 2ki0_A 8 IWVGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHhc
Confidence 48999999999999988763
No 153
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.12 E-value=8.4 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.5
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
.+.+|+|||+..+-
T Consensus 76 ~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 76 DTRGVFIDEVQFFN 89 (184)
T ss_dssp TEEEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 46899999998763
No 154
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=46.05 E-value=38 Score=21.93 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHhCCcEEEEchh----hhhhcc----cChHHHHHHHHHHHHHhcCCeEEEE
Q psy3868 6 TTLCRDSLGAFFFLINGP----EIMSKL----AGESESNLRKAFEEADKNSPSIIFI 54 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~----~l~~~~----~ges~~~l~~if~~a~~~~p~iifi 54 (69)
++++| ++|..++.+.+. .+.+.- ..+....++++++.+++..|.++++
T Consensus 176 A~amA-~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivL 231 (286)
T 2p10_A 176 AVAMA-KAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIIL 231 (286)
T ss_dssp HHHHH-HHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEE
T ss_pred HHHHH-HcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 45554 678888888877 444321 1123568999999999988888776
No 155
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=45.74 E-value=20 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid 58 (69)
..+.+.+.+..++..|.||.+-|++
T Consensus 26 ~~r~~~i~~~i~~~~pDIi~LQEv~ 50 (256)
T 4gz1_A 26 PERARGVCSCLALYSPDVVFLQEVI 50 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4557778888888899999999985
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=45.72 E-value=63 Score=21.39 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.2
Q ss_pred hcCCeEEEEccccccccc
Q psy3868 46 KNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 46 ~~~p~iifiDEid~i~~~ 63 (69)
+..|.+|+||++..+...
T Consensus 311 ~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTCCCEEEEECGGGSCCS
T ss_pred HcCCCEEEEccHHHhccC
Confidence 468999999999998753
No 157
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=45.67 E-value=16 Score=22.33 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhCCcEEEEch
Q psy3868 3 YRLTTLCRDSLGAFFFLING 22 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~ 22 (69)
|++++.+|.+++.+++..+.
T Consensus 15 STla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 15 TDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp HHHHHHHHHHHCCCEEECCS
T ss_pred HHHHHHHHhcCCCeEEeccH
Confidence 78999999999999887655
No 158
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=45.56 E-value=49 Score=20.04 Aligned_cols=26 Identities=4% Similarity=-0.090 Sum_probs=19.6
Q ss_pred hHHHHHHHHH---hCCcEEEEchhhhhhc
Q psy3868 3 YRLTTLCRDS---LGAFFFLINGPEIMSK 28 (69)
Q Consensus 3 T~la~aia~~---~~~~~~~v~~~~l~~~ 28 (69)
|++++.++.. .|.+++.++...+...
T Consensus 18 STla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 18 STFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 6789999987 7888887777665433
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.53 E-value=13 Score=20.57 Aligned_cols=18 Identities=17% Similarity=0.026 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 16 sT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 16 TTVGRELARALGYEFVDT 33 (173)
T ss_dssp HHHHHHHHHHHTCEEEEH
T ss_pred HHHHHHHHHHhCCcEEcc
Confidence 789999999999887653
No 160
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=45.31 E-value=19 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.2
Q ss_pred hcC-CeEEEEcccccc
Q psy3868 46 KNS-PSIIFIDELDAI 60 (69)
Q Consensus 46 ~~~-p~iifiDEid~i 60 (69)
... |.++++||.++=
T Consensus 302 ~~~~~~~lllDEp~~~ 317 (371)
T 3auy_A 302 IGNRVECIILDEPTVY 317 (371)
T ss_dssp HSSCCSEEEEESTTTT
T ss_pred hcCCCCeEEEeCCCCc
Confidence 467 999999998764
No 161
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=44.89 E-value=6.7 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 57899999998764
No 162
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=44.81 E-value=16 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccC
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~g 31 (69)
.+..+++.+-++|++.|+...-+++|.|
T Consensus 76 ~li~alC~E~~Ip~i~V~s~k~LG~a~G 103 (165)
T 2kg4_A 76 TLIQAFCCENDINILRVSNPGRLAELLL 103 (165)
T ss_dssp HHHHHHHHHTTCCEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHHC
Confidence 4677999999999999987776666665
No 163
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=44.73 E-value=6.6 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=11.8
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-.++++||+|.+..
T Consensus 144 ~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 144 RVEVAVLDEADEMLS 158 (207)
T ss_dssp TCSEEEEESHHHHHH
T ss_pred hceEEEEEChhHhhc
Confidence 357899999998753
No 164
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=44.68 E-value=43 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.0
Q ss_pred cCCeEEEEcccccccc
Q psy3868 47 NSPSIIFIDELDAIAP 62 (69)
Q Consensus 47 ~~p~iifiDEid~i~~ 62 (69)
.....|+|||+|.+..
T Consensus 164 ~~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQ 179 (591)
T ss_dssp TCEEEEEEETGGGGST
T ss_pred cCCcEEEEECcccccc
Confidence 4668999999998753
No 165
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.56 E-value=27 Score=20.73 Aligned_cols=35 Identities=34% Similarity=0.228 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 46 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~ 46 (69)
|-.++..+|.+.|.+.+.+.. ++..+++.|+.|.+
T Consensus 148 G~~~~~~~A~~~Gl~~vli~s----------g~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 148 SGKTVTDEAIKQGLYGETINS----------GEESLRRAIEEALN 182 (196)
T ss_dssp ECHHHHHHHHHTTCEEEECCC----------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcEEEEec----------CHHHHHHHHHHHHH
Confidence 345667789999998877744 35677888888764
No 166
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=43.88 E-value=19 Score=19.77 Aligned_cols=19 Identities=5% Similarity=-0.155 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhCCcEEEEc
Q psy3868 3 YRLTTLCRDSLGAFFFLIN 21 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~ 21 (69)
|++++.++..++.+++..+
T Consensus 15 sT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 15 STVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp HHHHHHHHHHHCCCEEECC
T ss_pred HHHHHHHHHHhCCeeecCc
Confidence 6899999999998886554
No 167
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.86 E-value=7.3 Score=24.13 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhCCcE
Q psy3868 3 YRLTTLCRDSLGAFF 17 (69)
Q Consensus 3 T~la~aia~~~~~~~ 17 (69)
|++|.++|+.+.-.+
T Consensus 72 Tt~a~ala~~l~g~i 86 (212)
T 1tue_A 72 SYFGMSFIHFIQGAV 86 (212)
T ss_dssp HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhCCCe
Confidence 667888888876443
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=43.78 E-value=42 Score=18.83 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 26 sT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 26 GTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HHHHHHHHHHHTCEEEEH
T ss_pred HHHHHHHHHHhCCeEEcH
Confidence 689999999999776543
No 169
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=43.36 E-value=7.2 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|++||+|.+..
T Consensus 155 ~~~~iViDEah~~~~ 169 (224)
T 1qde_A 155 KIKMFILDEADEMLS 169 (224)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEcChhHHhh
Confidence 357899999998754
No 170
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=43.31 E-value=23 Score=20.42 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid 58 (69)
...+...+.+..++..|.||.+-|++
T Consensus 29 ~~~r~~~i~~~i~~~~pDIi~LQEv~ 54 (256)
T 4fva_A 29 LLTRMKAVAHIVKNVNPDILFLQEVV 54 (256)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 35567778888888899999999985
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.15 E-value=16 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 14 sT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 14 STVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHhCCCEEEC
Confidence 789999999999887653
No 172
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=43.13 E-value=25 Score=20.61 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
...++.++.+..++..|.||.+-|++.-.
T Consensus 19 ~~~~~~~i~~~i~~~~~DIi~LQEv~~~~ 47 (266)
T 3teb_A 19 QMEKIDILARTIAEKQYDVIAMQEVNQLM 47 (266)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEEccccc
Confidence 45677888888888899999999997543
No 173
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=43.09 E-value=7.4 Score=22.77 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..+++||+|.+..
T Consensus 150 ~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 150 TAHILVVDEADLMLD 164 (219)
T ss_dssp GCCEEEECSHHHHHH
T ss_pred cceEEEEcCchHHhh
Confidence 457899999998753
No 174
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=42.88 E-value=37 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=9.7
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
.|.++++||.++-.
T Consensus 86 ~~~~llLDEp~a~L 99 (173)
T 3kta_B 86 PAPFYLFDEIDAHL 99 (173)
T ss_dssp CCSEEEEESTTTTC
T ss_pred CCCEEEECCCccCC
Confidence 35688888877643
No 175
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=42.70 E-value=7.6 Score=22.67 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..+++||+|.+..
T Consensus 158 ~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 158 HIKHFILDECDKMLE 172 (220)
T ss_dssp TCCEEEEESHHHHHS
T ss_pred cCCEEEEcCHHHHhc
Confidence 347899999998854
No 176
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=42.61 E-value=28 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.6
Q ss_pred cCCeEEEEcccccccc
Q psy3868 47 NSPSIIFIDELDAIAP 62 (69)
Q Consensus 47 ~~p~iifiDEid~i~~ 62 (69)
..|.++++||+..+++
T Consensus 278 ~~~~~~~lDE~~~l~~ 293 (437)
T 1e9r_A 278 KRRLWLFIDELASLEK 293 (437)
T ss_dssp TCCEEEEESCGGGSCB
T ss_pred CccEEEEEEccccccc
Confidence 3589999999999875
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.32 E-value=21 Score=20.65 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.1
Q ss_pred hcCCeEEEEccccccc
Q psy3868 46 KNSPSIIFIDELDAIA 61 (69)
Q Consensus 46 ~~~p~iifiDEid~i~ 61 (69)
...|.+|++||.-+..
T Consensus 123 ~~~~~llilDe~~~~l 138 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHF 138 (231)
T ss_dssp SSCEEEEEEETSSHHH
T ss_pred CCceeEEEECChHHHh
Confidence 5689999999987753
No 178
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=42.15 E-value=43 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCcEEEEchh
Q psy3868 5 LTTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~ 23 (69)
.++.+|..+|.|++.++.+
T Consensus 54 ~a~~~A~~LGIpl~~v~~~ 72 (237)
T 3rjz_A 54 LTDLQARALGIPLVKGFTQ 72 (237)
T ss_dssp HHHHHHHHHTCCEEEEEC-
T ss_pred HHHHHHHHcCCCEEEEECC
Confidence 6788999999999988754
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=41.82 E-value=29 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.9
Q ss_pred hHHHHHHHHHh---CCcEEEEchhhh
Q psy3868 3 YRLTTLCRDSL---GAFFFLINGPEI 25 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~~~~l 25 (69)
|++++.++..+ |.+++.+++..+
T Consensus 19 ST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 19 TTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEECChHH
Confidence 67889999987 899998887655
No 180
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=41.11 E-value=30 Score=20.76 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
+||...-.+|++.+.||+.+.++.=++
T Consensus 72 iGT~~~Al~Ak~~~vPf~V~a~~~k~~ 98 (191)
T 1w2w_B 72 IGTLQLAVICKQFGIKFFVVAPKTTID 98 (191)
T ss_dssp TTHHHHHHHHHHHTCEEEEECCGGGBC
T ss_pred ccHHHHHHHHHHcCCCEEEecccceee
Confidence 578889999999999999987765544
No 181
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=41.02 E-value=8.3 Score=22.93 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 46799999999864
No 182
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=41.00 E-value=49 Score=21.17 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCcEEEEchhhhh
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIM 26 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~ 26 (69)
.|--++|.+.|+|+..+++.+.+
T Consensus 135 ~lna~~Ag~~gVPV~lvsGDd~~ 157 (274)
T 1hi9_A 135 GLNAYVAGYYDVPVLMVAGDDRA 157 (274)
T ss_dssp HHHHHHHHHTTCCEEEEEEEHHH
T ss_pred HHHHHHHhhcCCCEEEEecCHHH
Confidence 35568899999999999998763
No 183
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=40.95 E-value=7.2 Score=22.17 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=25.2
Q ss_pred HHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh
Q psy3868 11 DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 46 (69)
Q Consensus 11 ~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~ 46 (69)
.....|++.-.|++-+..-.+-+.++|+.+|+.|..
T Consensus 50 slA~qPv~~s~~~~qv~~~~~stSk~i~sifKeAi~ 85 (120)
T 1wj5_A 50 SLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNALQ 85 (120)
T ss_dssp HHHSSCCSCCSSCCCSSCCCCSSCHHHHHHHHHHHH
T ss_pred HhccCCccccccchhcccCCccHHHHHHHHHHHHHH
Confidence 345567776666655555556678999999998854
No 184
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=40.59 E-value=18 Score=20.37 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhCCcEEEEc
Q psy3868 3 YRLTTLCRDSLGAFFFLIN 21 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~ 21 (69)
|++++.++..++.+++..+
T Consensus 25 st~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 25 TTLGKELASKSGLKYINVG 43 (180)
T ss_dssp HHHHHHHHHHHCCEEEEHH
T ss_pred HHHHHHHHHHhCCeEEEHH
Confidence 6899999999998887654
No 185
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=40.34 E-value=46 Score=18.22 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHH
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEA 44 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a 44 (69)
.-++.++.+.+.+++.+++-+ ...+.++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~---------~~~v~~l~~~l 163 (181)
T 3t5g_A 132 EEGKALAESWNAAFLESSAKE---------NQTAVDVFRRI 163 (181)
T ss_dssp HHHHHHHHHTTCEEEECCTTS---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEecCC---------CCCHHHHHHHH
Confidence 346677888888888887643 34566666665
No 186
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=40.07 E-value=24 Score=20.09 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 16 st~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 16 SSVARRVAAALGVPYLSS 33 (208)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHhcCCceecc
Confidence 789999999999888653
No 187
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=39.99 E-value=8.8 Score=22.88 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.8
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-.+|++||+|.+..
T Consensus 173 ~~~~lViDEah~~~~ 187 (237)
T 3bor_A 173 WIKMFVLDEADEMLS 187 (237)
T ss_dssp TCCEEEEESHHHHHH
T ss_pred cCcEEEECCchHhhc
Confidence 357899999998753
No 188
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=39.84 E-value=61 Score=19.51 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=30.8
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
++..|.+.|.|++.+++.++-+ .+..=.++.+..++.+|.++++=-.-.+
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~Dliv~a~y~~i 94 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPS-----KAAFESEILRELKGRQIDWIALAGYMRL 94 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSS-----HHHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred HHHHHHHcCCCEEEeCcccccc-----hhhhHHHHHHHHHhcCCCEEEEchhhhh
Confidence 4567889999999887765421 1111223455566778888877544333
No 189
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=39.82 E-value=9 Score=22.64 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.2
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
.-..|++||+|.+.
T Consensus 171 ~~~~lViDEah~~~ 184 (236)
T 2pl3_A 171 DLQMLVLDEADRIL 184 (236)
T ss_dssp TCCEEEETTHHHHH
T ss_pred cccEEEEeChHHHh
Confidence 34689999999875
No 190
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.69 E-value=43 Score=17.75 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=9.7
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 131 ~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 131 GRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHHHHTSCEEEECT
T ss_pred HHHHHHHhCCCEEEecC
Confidence 44555556666666654
No 191
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=39.64 E-value=22 Score=21.92 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCcEEEEc------------hhh--hh--hcccChHHHHHHHHHHHHHh-cCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFLIN------------GPE--IM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~------------~~~--l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~ 61 (69)
-+++..+|..++.++-.-. ... |+ ..|...|.+.|+++.+..+- ....+++-||+|-=.
T Consensus 45 f~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~ 120 (207)
T 3nea_A 45 EWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDS 120 (207)
T ss_dssp HHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCT
T ss_pred HHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHhCCCHHHEEEEEEcCCCCC
Confidence 4567788888876543221 111 11 23677788888888776532 123566669999644
No 192
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.46 E-value=24 Score=21.39 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=12.4
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.+|++||-
T Consensus 156 iAral~~~p~llllDEP 172 (235)
T 3tif_A 156 IARALANNPPIILADQP 172 (235)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33444578999999995
No 193
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.41 E-value=28 Score=17.83 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..++..|.++++|-
T Consensus 39 a~~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 39 ALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp HHHHHHHSCCSEEEEES
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 44455667899999983
No 194
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=39.30 E-value=26 Score=17.94 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 38 al~~~~~~~~dlii~D 53 (120)
T 3f6p_A 38 AVEMVEELQPDLILLD 53 (120)
T ss_dssp HHHHHHTTCCSEEEEE
T ss_pred HHHHHhhCCCCEEEEe
Confidence 4445566789999997
No 195
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=39.12 E-value=9.3 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 45899999999854
No 196
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=38.97 E-value=6.9 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
--++..+|..++.|+..+
T Consensus 64 ~~~a~~la~~l~~p~~~~ 81 (175)
T 1vch_A 64 IPLTHVLAEALGLPYVVA 81 (175)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHHHhCCCEEEE
Confidence 356788999999998654
No 197
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=38.81 E-value=14 Score=22.59 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=10.9
Q ss_pred eEEEEcccccccc
Q psy3868 50 SIIFIDELDAIAP 62 (69)
Q Consensus 50 ~iifiDEid~i~~ 62 (69)
.+|++||+|.+..
T Consensus 227 ~~vIiDEaH~~~~ 239 (282)
T 1rif_A 227 GMMMNDECHLATG 239 (282)
T ss_dssp EEEEEETGGGCCH
T ss_pred CEEEEECCccCCc
Confidence 6899999998753
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=38.80 E-value=50 Score=21.45 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHh-c-CCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADK-N-SPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~-~-~p~iifiDEid~i~~ 62 (69)
+...|+...+..++ + .+.+|+||-+..+..
T Consensus 139 si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 139 RIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 34455555555443 4 689999999988765
No 199
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=38.78 E-value=28 Score=21.51 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCC-eEEEEccccccc
Q psy3868 37 LRKAFEEADKNSP-SIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p-~iifiDEid~i~ 61 (69)
++++-+.++++.| ..|++||+.++.
T Consensus 158 ~~~i~~l~~~~~~~~~li~Dea~~~~ 183 (384)
T 1eg5_A 158 VEDVTRIVKKKNKETLVHVDAVQTIG 183 (384)
T ss_dssp HHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred HHHHHHHHHhcCCceEEEEEhhhhcC
Confidence 4666666766544 889999998864
No 200
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=38.54 E-value=35 Score=19.32 Aligned_cols=29 Identities=7% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 35 SNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 35 ~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
..+.++.+.++...-.+|++.++|.|+++
T Consensus 62 p~l~~ll~~~~~g~id~vvv~~ldRl~R~ 90 (169)
T 3g13_A 62 EDFQRMINDCMNGEIDMVFTKSISRFARN 90 (169)
T ss_dssp HHHHHHHHHHHTTCCSEEEESCHHHHCSS
T ss_pred HHHHHHHHHHHcCCCcEEEEEeccccccC
Confidence 45788888887777688999999999874
No 201
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.46 E-value=29 Score=17.85 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 42 a~~~l~~~~~dlii~d 57 (132)
T 3lte_A 42 AGIKLSTFEPAIMTLD 57 (132)
T ss_dssp HHHHHHHTCCSEEEEE
T ss_pred HHHHHHhcCCCEEEEe
Confidence 4445566789999998
No 202
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.39 E-value=20 Score=20.20 Aligned_cols=18 Identities=6% Similarity=-0.167 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 23 sT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 23 GTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp HHHHHHHHHHHCCEEEEH
T ss_pred HHHHHHHHHHhCCeEEcH
Confidence 689999999999887654
No 203
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=38.39 E-value=9.7 Score=22.72 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|++||+|.+..
T Consensus 176 ~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 176 RTTYLVLDEADRMLD 190 (242)
T ss_dssp TCCEEEETTHHHHHH
T ss_pred cccEEEEeCHHHHhh
Confidence 356899999998764
No 204
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=38.38 E-value=18 Score=21.97 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhCCcEEEEch------------h--hhh--hcccChHHHHHHHHHHHHHhc-CCeEEEEcccccccc
Q psy3868 2 SYRLTTLCRDSLGAFFFLING------------P--EIM--SKLAGESESNLRKAFEEADKN-SPSIIFIDELDAIAP 62 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~------------~--~l~--~~~~ges~~~l~~if~~a~~~-~p~iifiDEid~i~~ 62 (69)
+-+++..+|..++.++..-.. . -++ ..|...|.+.|+++.+.-+-. .-.+++-||+|-=.+
T Consensus 25 Gf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ki~~~~ilVihDdldL~~G 102 (193)
T 4hoy_A 25 GFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPG 102 (193)
T ss_dssp HHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCTT
T ss_pred HHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHcCCCchheEEeeeccccccC
Confidence 345677888888765432110 0 011 136777888888887765432 234555699996443
No 205
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=38.37 E-value=20 Score=20.60 Aligned_cols=18 Identities=11% Similarity=-0.088 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 34 ST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 34 GTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHhCCcEEeh
Confidence 679999999999887654
No 206
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=38.30 E-value=54 Score=18.49 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHH
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEA 44 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a 44 (69)
..++.++...+.+++.+++-+ ...+.++|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~---------~~~v~~l~~~l 181 (201)
T 3oes_A 150 VEGKKLAESWGATFMESSARE---------NQLTQGIFTKV 181 (201)
T ss_dssp HHHHHHHHHHTCEEEECCTTC---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEeCCC---------CCCHHHHHHHH
Confidence 346678888888888887643 34555666554
No 207
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=38.28 E-value=23 Score=22.03 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhCCcEEEEc------------hhh--hh--hcccChHHHHHHHHHHHHHh-cCCeEEEEccccccc
Q psy3868 2 SYRLTTLCRDSLGAFFFLIN------------GPE--IM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIA 61 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~------------~~~--l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~ 61 (69)
+-+++..+|..++.++..-. ... |+ ..|...|.+.|+++.+..+- ....+++-||+|-=.
T Consensus 44 Gf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~ 120 (222)
T 3v2i_A 44 GFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPP 120 (222)
T ss_dssp HHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCT
T ss_pred HHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHHhCCCHHHEEEEEecCCCCC
Confidence 34567788888876543211 111 11 23677788888888776532 123566669999644
No 208
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=38.19 E-value=9.7 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.8
Q ss_pred CeEEEEccccccc
Q psy3868 49 PSIIFIDELDAIA 61 (69)
Q Consensus 49 p~iifiDEid~i~ 61 (69)
-..|++||+|.+.
T Consensus 175 ~~~lViDEah~~~ 187 (253)
T 1wrb_A 175 CKYIVLDEADRML 187 (253)
T ss_dssp CCEEEEETHHHHH
T ss_pred CCEEEEeCHHHHH
Confidence 4689999999875
No 209
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=37.88 E-value=26 Score=19.24 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHhCCcEEEEch
Q psy3868 7 TLCRDSLGAFFFLING 22 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~ 22 (69)
+.++.+.+.+++.+|+
T Consensus 131 ~~~~~~~~~~~~~~SA 146 (165)
T 2wji_A 131 DKLEKILGVKVVPLSA 146 (165)
T ss_dssp HHHHHHHTSCEEECBG
T ss_pred HHHHHHhCCCEEEEEc
Confidence 3455555666665554
No 210
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=37.87 E-value=30 Score=18.21 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 40 al~~~~~~~~dlvl~D 55 (136)
T 3t6k_A 40 ALQQIYKNLPDALICD 55 (136)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4445556789999998
No 211
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=37.76 E-value=70 Score=19.60 Aligned_cols=50 Identities=6% Similarity=-0.051 Sum_probs=31.0
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
++..|.+.|.|++.+++.++-++ +..=.++.+..++.+|.++++=-.-.|
T Consensus 64 ~~~~A~~~gIp~~~~~~~~~~~r-----~~~~~~~~~~l~~~~~Dliv~agy~~I 113 (229)
T 3auf_A 64 GLERARRAGVDALHMDPAAYPSR-----TAFDAALAERLQAYGVDLVCLAGYMRL 113 (229)
T ss_dssp HHHHHHHTTCEEEECCGGGSSSH-----HHHHHHHHHHHHHTTCSEEEESSCCSC
T ss_pred HHHHHHHcCCCEEEECcccccch-----hhccHHHHHHHHhcCCCEEEEcChhHh
Confidence 35678899999998887665221 111123455566778888877544333
No 212
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=37.30 E-value=24 Score=21.14 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=12.2
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.++++||-
T Consensus 151 laral~~~p~lllLDEP 167 (224)
T 2pcj_A 151 IARALANEPILLFADEP 167 (224)
T ss_dssp HHHHTTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33333468999999995
No 213
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=37.12 E-value=25 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.2
Q ss_pred cCCeEEEEcccccc
Q psy3868 47 NSPSIIFIDELDAI 60 (69)
Q Consensus 47 ~~p~iifiDEid~i 60 (69)
..-.+|++||+|..
T Consensus 175 ~~~~~lVlDEah~~ 188 (235)
T 3llm_A 175 RGISHVIVDEIHER 188 (235)
T ss_dssp TTCCEEEECCTTSC
T ss_pred cCCcEEEEECCccC
Confidence 45689999999973
No 214
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.08 E-value=27 Score=21.16 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.0
Q ss_pred HHhcCCeEEEEccc
Q psy3868 44 ADKNSPSIIFIDEL 57 (69)
Q Consensus 44 a~~~~p~iifiDEi 57 (69)
|-...|.+|++||-
T Consensus 153 aL~~~p~lllLDEP 166 (240)
T 1ji0_A 153 ALMSRPKLLMMDEP 166 (240)
T ss_dssp HHTTCCSEEEEECT
T ss_pred HHHcCCCEEEEcCC
Confidence 33468999999994
No 215
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.01 E-value=22 Score=19.89 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.++..++.+++.
T Consensus 17 sT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 17 GTQCARIVEKYGYTHLS 33 (196)
T ss_dssp HHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHhCCeEEe
Confidence 68899999999987754
No 216
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.92 E-value=27 Score=17.99 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=12.1
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..++..|.++++|
T Consensus 38 al~~l~~~~~dlvllD 53 (122)
T 3gl9_A 38 ALEKLSEFTPDLIVLX 53 (122)
T ss_dssp HHHHHTTBCCSEEEEC
T ss_pred HHHHHHhcCCCEEEEe
Confidence 4455567789999998
No 217
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.86 E-value=22 Score=19.98 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 19 ST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 19 TTLSQALATGLRLPLLSK 36 (193)
T ss_dssp HHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHcCCeEecH
Confidence 689999999999887664
No 218
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=36.85 E-value=33 Score=17.68 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++...+..|.++++|
T Consensus 39 a~~~l~~~~~dlvi~d 54 (133)
T 3nhm_A 39 GLQQALAHPPDVLISD 54 (133)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhcCCCCEEEEe
Confidence 4455556789999998
No 219
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=36.81 E-value=41 Score=20.48 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=13.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.|.+|+|||+-++.+
T Consensus 133 ~~~livlDe~~~~~~ 147 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHI 147 (279)
T ss_dssp TCSEEEEECGGGGCC
T ss_pred CCCEEEECCHHHhcC
Confidence 699999999999754
No 220
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=36.72 E-value=5.2 Score=22.62 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=8.9
Q ss_pred HHhcCCeEEEEcccc
Q psy3868 44 ADKNSPSIIFIDELD 58 (69)
Q Consensus 44 a~~~~p~iifiDEid 58 (69)
++. +|.++|+||=|
T Consensus 101 ~~~-~P~vV~vd~~~ 114 (114)
T 3oug_A 101 ENI-KPKLVDLKTGD 114 (114)
T ss_dssp CCC-CCEEEECC---
T ss_pred Hhc-CCEEEEeCCCC
Confidence 445 89999999844
No 221
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=36.69 E-value=22 Score=21.72 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhCCcEEEE------------chhh--hh--hcccChHHHHHHHHHHHHHh-cCCeEEEEccccccc
Q psy3868 2 SYRLTTLCRDSLGAFFFLI------------NGPE--IM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIA 61 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v------------~~~~--l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~ 61 (69)
+-+++..+|.+++.++..- .... |+ ..|...|.+.|+++.+..+- ....+++-||+|-=.
T Consensus 31 Gf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldLp~ 107 (199)
T 4fyj_A 31 GALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPP 107 (199)
T ss_dssp HHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCT
T ss_pred HHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhCCCHHHEEEEEecCCCCC
Confidence 3457778888887654321 1111 11 23677788888888766432 123566669999644
No 222
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.63 E-value=36 Score=17.74 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.9
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 42 a~~~l~~~~~dlvi~d 57 (140)
T 3grc_A 42 ALEQVARRPYAAMTVD 57 (140)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4455566789999997
No 223
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=36.50 E-value=1.1e+02 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=27.5
Q ss_pred HHHHhCCcEEEE-chhhhhhcccChHHHHHHHHHHHHHh--cCCeEEEEcc
Q psy3868 9 CRDSLGAFFFLI-NGPEIMSKLAGESESNLRKAFEEADK--NSPSIIFIDE 56 (69)
Q Consensus 9 ia~~~~~~~~~v-~~~~l~~~~~ges~~~l~~if~~a~~--~~p~iifiDE 56 (69)
.+...|++.+.+ ++.++ ..|.+.++.|++ .+|.+|.+.=
T Consensus 226 ~~~a~G~~~~~V~DG~D~---------~al~~Al~~A~~~~~~P~lI~~~T 267 (700)
T 3rim_A 226 RYRAYGWHVQEVEGGENV---------VGIEEAIANAQAVTDRPSFIALRT 267 (700)
T ss_dssp HHHHHTCEEEEEECTTCH---------HHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHcCCeEEEECCCCCH---------HHHHHHHHHHHHcCCCCEEEEEEE
Confidence 345567888777 66554 567888888876 5799987653
No 224
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=36.36 E-value=23 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
..+|+.+|..++.|+..
T Consensus 35 ~~~A~~la~~l~~p~~~ 51 (208)
T 1wd5_A 35 VVVADEVARRLGGELDV 51 (208)
T ss_dssp HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCCeEE
Confidence 46889999999998754
No 225
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=36.19 E-value=53 Score=20.18 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|..+|.+++..
T Consensus 62 STl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 62 TTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HHHHHHHHHHHTCEEEEH
T ss_pred HHHHHHHHHhcCCcEEeC
Confidence 789999999999988664
No 226
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=36.09 E-value=47 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.9
Q ss_pred cCCeEEEEccccccc
Q psy3868 47 NSPSIIFIDELDAIA 61 (69)
Q Consensus 47 ~~p~iifiDEid~i~ 61 (69)
..|.++++||.++=.
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 468999999987643
No 227
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=36.04 E-value=30 Score=21.24 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHhcCCeEEEEcccc
Q psy3868 43 EADKNSPSIIFIDELD 58 (69)
Q Consensus 43 ~a~~~~p~iifiDEid 58 (69)
.|-...|.+|++||--
T Consensus 141 raL~~~p~lllLDEPt 156 (253)
T 2nq2_C 141 RAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHTTCSEEEESSSS
T ss_pred HHHHcCCCEEEEeCCc
Confidence 3334689999999943
No 228
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=35.84 E-value=35 Score=20.02 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 35 SNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 35 ~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
.+...+.+..+...|.||.+-|++.
T Consensus 22 ~r~~~i~~~i~~~~~DIv~LQEv~~ 46 (257)
T 3l1w_A 22 FRKEAVCQLINFHDWSLCCIQEVRP 46 (257)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 5566777777788999999999873
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.72 E-value=31 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.+|++||-
T Consensus 164 lAraL~~~p~lllLDEP 180 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEP 180 (262)
T ss_dssp HHHHHHTCCSEEEEEST
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 33444578999999994
No 230
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=35.43 E-value=25 Score=21.31 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhCCcEEE------------Echhh--hh--hcccChHHHHHHHHHHHHHhc-CCeEEEEcccccccc
Q psy3868 2 SYRLTTLCRDSLGAFFFL------------INGPE--IM--SKLAGESESNLRKAFEEADKN-SPSIIFIDELDAIAP 62 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~------------v~~~~--l~--~~~~ges~~~l~~if~~a~~~-~p~iifiDEid~i~~ 62 (69)
+-+++..+|..++.++-. +.+.. |+ ..|...|.+.|+.+.+.-+-. ...+++-||+|-=.+
T Consensus 23 Gf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdldlp~G 100 (193)
T 2pth_A 23 GAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPG 100 (193)
T ss_dssp HHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEETTSCTT
T ss_pred HHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHhCCCHHHEEEEecccCCCCc
Confidence 345677888887765420 11111 11 125666777787777655321 235666699996443
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=35.35 E-value=85 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 35 SNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 35 ~~l~~if~~a~~~~p~iifiDEid 58 (69)
+.+.+.+..+....|.++++|+.-
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC
Confidence 333445555666789999999864
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=35.34 E-value=45 Score=19.08 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.++. +|.+++.
T Consensus 16 ST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 16 TTIANLFTD-LGVPLVD 31 (206)
T ss_dssp HHHHHHHHT-TTCCEEE
T ss_pred HHHHHHHHH-CCCcccc
Confidence 678899987 8887754
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=35.25 E-value=30 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCeEEEEccc
Q psy3868 36 NLRKAFEEADKNSPSIIFIDEL 57 (69)
Q Consensus 36 ~l~~if~~a~~~~p~iifiDEi 57 (69)
.++..+..+-...|.+|++||.
T Consensus 86 ~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCC
T ss_pred HHHHHHHHHHhhCCCEEEeCCC
Confidence 4455666665678999999998
No 234
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=35.18 E-value=64 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.4
Q ss_pred CCeEEEEccccccc
Q psy3868 48 SPSIIFIDELDAIA 61 (69)
Q Consensus 48 ~p~iifiDEid~i~ 61 (69)
....|++||.|.+-
T Consensus 367 ~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 367 KWQFMAVDEAHRLK 380 (800)
T ss_dssp EEEEEEETTGGGGC
T ss_pred Ccceeehhhhhhhc
Confidence 45689999999984
No 235
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=35.17 E-value=82 Score=19.99 Aligned_cols=45 Identities=4% Similarity=0.082 Sum_probs=26.3
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDE 56 (69)
++.+|.+.|.|++.++... ...+..=.++.+..++.+|.++++=-
T Consensus 130 ~~~~A~~~gIp~~~~~~~~------~~r~~~~~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 130 LEPLAHWHKIPYYHFALDP------KDKPGQERKVLQVIEETGAELVILAR 174 (286)
T ss_dssp THHHHHHTTCCEEECCCBT------TBHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHcCCCEEEeCCCc------CCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 3567889999999875421 11111112345555566788877643
No 236
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=35.05 E-value=62 Score=18.65 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCC-cEEEEchhhhhhcccChHHHH-HHHHHHHHH
Q psy3868 4 RLTTLCRDSLGA-FFFLINGPEIMSKLAGESESN-LRKAFEEAD 45 (69)
Q Consensus 4 ~la~aia~~~~~-~~~~v~~~~l~~~~~ges~~~-l~~if~~a~ 45 (69)
.-++.++.+.++ +++++++-+ ... +.++|+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~e~SA~~---------g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 164 EQGCAIAKQLGAEIYLEGSAFT---------SEKSIHSIFRTAS 198 (214)
T ss_dssp HHHHHHHHHHTCSEEEECCTTT---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccCC---------CcccHHHHHHHHH
Confidence 356788899998 999987743 233 666776653
No 237
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=34.45 E-value=36 Score=18.35 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCcEEEEch
Q psy3868 5 LTTLCRDSLGAFFFLING 22 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~ 22 (69)
.++.++...+.+++.+++
T Consensus 131 ~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 131 EGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp HHHHHHHHTTCEEEECBT
T ss_pred HHHHHHHHcCCcEEEecC
Confidence 445566666777766655
No 238
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=34.39 E-value=52 Score=19.71 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=13.6
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy3868 40 AFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 40 if~~a~~~~p~iifiDEid 58 (69)
.+.+|-...|.++++||--
T Consensus 140 ~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHhcCCCEEEEECcc
Confidence 3444445789999999953
No 239
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=34.32 E-value=1.1e+02 Score=21.79 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHhCCcEE-EEchhhhhhcccChHHHHHHHHHHHHHh--cCCeEEEEc
Q psy3868 9 CRDSLGAFFF-LINGPEIMSKLAGESESNLRKAFEEADK--NSPSIIFID 55 (69)
Q Consensus 9 ia~~~~~~~~-~v~~~~l~~~~~ges~~~l~~if~~a~~--~~p~iifiD 55 (69)
.+...|++.+ .+++.+ ...|.+.++.|++ .+|++|.+.
T Consensus 206 ~~~a~G~~~~~~vdG~d---------~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 206 RFRAYGWHVIENVDGHD---------FVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHTTCEEEEEEETTC---------HHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHCCCeEEEEEcCCC---------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4455666666 665544 3567788888876 579988664
No 240
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=34.27 E-value=32 Score=21.37 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.+|++||-
T Consensus 170 lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 170 IARALAMEPKIMLFDEP 186 (263)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33344578999999994
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=34.24 E-value=32 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHhcCCeEEEEcccc
Q psy3868 41 FEEADKNSPSIIFIDELD 58 (69)
Q Consensus 41 f~~a~~~~p~iifiDEid 58 (69)
+.+|-...|.+|++||--
T Consensus 167 lAraL~~~p~lllLDEPt 184 (271)
T 2ixe_A 167 LARALIRKPRLLILDNAT 184 (271)
T ss_dssp HHHHHTTCCSEEEEESTT
T ss_pred HHHHHhcCCCEEEEECCc
Confidence 334445789999999953
No 242
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=34.20 E-value=33 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.1
Q ss_pred HHhcCCeEEEEccc
Q psy3868 44 ADKNSPSIIFIDEL 57 (69)
Q Consensus 44 a~~~~p~iifiDEi 57 (69)
|-...|.+|++||-
T Consensus 175 aL~~~p~lLlLDEP 188 (279)
T 2ihy_A 175 ALMGQPQVLILDEP 188 (279)
T ss_dssp HHHTCCSEEEEEST
T ss_pred HHhCCCCEEEEeCC
Confidence 33468999999994
No 243
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=34.14 E-value=29 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=11.9
Q ss_pred HHHhcCCeEEEEcccc
Q psy3868 43 EADKNSPSIIFIDELD 58 (69)
Q Consensus 43 ~a~~~~p~iifiDEid 58 (69)
.|-...|.+|++||--
T Consensus 156 raL~~~p~lllLDEPt 171 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETD 171 (250)
T ss_dssp HHHHHCCSEEEEECGG
T ss_pred HHHHcCCCEEEEeCCC
Confidence 3444689999999953
No 244
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=34.06 E-value=25 Score=20.57 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|..++.+++..
T Consensus 19 sT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 19 GTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp HHHHHHHHHHHCCEEEEH
T ss_pred HHHHHHHHHHhCceEEeh
Confidence 689999999999887654
No 245
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=34.06 E-value=12 Score=22.54 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.2
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 46899999998754
No 246
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=33.83 E-value=13 Score=22.70 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 47889999998754
No 247
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=33.66 E-value=27 Score=19.48 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 20 sT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 20 GTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp HHHHHHHHHHHCCEEEEH
T ss_pred HHHHHHHHHHhCCeEeeH
Confidence 689999999999877654
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=33.59 E-value=30 Score=21.41 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHhcCCeEEEEccc
Q psy3868 43 EADKNSPSIIFIDEL 57 (69)
Q Consensus 43 ~a~~~~p~iifiDEi 57 (69)
.|-...|.+|++||-
T Consensus 177 raL~~~p~lLlLDEP 191 (267)
T 2zu0_C 177 QMAVLEPELCILDES 191 (267)
T ss_dssp HHHHHCCSEEEEEST
T ss_pred HHHHhCCCEEEEeCC
Confidence 333468999999994
No 249
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=33.41 E-value=33 Score=17.81 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..+...|.++++|-
T Consensus 43 a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 43 GERLFGLHAPDVIITDI 59 (137)
T ss_dssp HHHHHHHHCCSEEEECS
T ss_pred HHHHHhccCCCEEEEeC
Confidence 34444556899999983
No 250
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=33.40 E-value=1.1e+02 Score=21.64 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh-cCCeEEEEc
Q psy3868 8 LCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPSIIFID 55 (69)
Q Consensus 8 aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~-~~p~iifiD 55 (69)
..+...|++.+.+++.+ ...|.+.++.|++ .+|++|.+.
T Consensus 200 ~~~~a~G~~~~~vdGhd---------~~~l~~al~~A~~~~~P~lI~v~ 239 (632)
T 3l84_A 200 MRFEAQGFEVLSINGHD---------YEEINKALEQAKKSTKPCLIIAK 239 (632)
T ss_dssp HHHHHTTCEEEEEETTC---------HHHHHHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHcCCeEEEEeeCC---------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 34566677777776544 4567778888875 579888654
No 251
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.39 E-value=41 Score=16.77 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHhcCCeEEEEc
Q psy3868 41 FEEADKNSPSIIFID 55 (69)
Q Consensus 41 f~~a~~~~p~iifiD 55 (69)
++..+...|.++++|
T Consensus 38 ~~~~~~~~~dlvl~D 52 (116)
T 3a10_A 38 LKKFFSGNYDLVILD 52 (116)
T ss_dssp HHHHHHSCCSEEEEC
T ss_pred HHHHhcCCCCEEEEE
Confidence 344455679999987
No 252
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=33.37 E-value=1.2e+02 Score=21.80 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=26.5
Q ss_pred HHHHHhCCcEEEE-chhhhhhcccChHHHHHHHHHHHHHh--cCCeEEEEc
Q psy3868 8 LCRDSLGAFFFLI-NGPEIMSKLAGESESNLRKAFEEADK--NSPSIIFID 55 (69)
Q Consensus 8 aia~~~~~~~~~v-~~~~l~~~~~ges~~~l~~if~~a~~--~~p~iifiD 55 (69)
..+...|++.+.+ ++.+ ...|.+.++.+++ .+|++|-+.
T Consensus 229 ~~~~a~G~~~~~v~DG~d---------~~~l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 229 DRYKAYGWQVIRVEDGND---------IEAIAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHTCEEEEESCTTC---------HHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHcCCcEEEEecCCC---------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3455567777776 5544 4567778888876 679988664
No 253
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=33.37 E-value=34 Score=17.25 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=10.4
Q ss_pred HHHHHhcCCeEEEEc
Q psy3868 41 FEEADKNSPSIIFID 55 (69)
Q Consensus 41 f~~a~~~~p~iifiD 55 (69)
++..+...|.++++|
T Consensus 40 ~~~~~~~~~dlil~D 54 (120)
T 1tmy_A 40 VEKYKELKPDIVTMD 54 (120)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCEEEEe
Confidence 334445679999988
No 254
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=33.35 E-value=40 Score=19.13 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHhcCCeE
Q psy3868 32 ESESNLRKAFEEADKNSPSI 51 (69)
Q Consensus 32 es~~~l~~if~~a~~~~p~i 51 (69)
++...|.+..+.+.+++|++
T Consensus 41 eta~sLE~AIE~si~~QP~v 60 (121)
T 2i52_A 41 ENASMAEEFIERSTMIQPFV 60 (121)
T ss_dssp TTHHHHHHHHHHHHTTSTTE
T ss_pred ccHHHHHHHHHHHHhcCCce
Confidence 57788999999999999987
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=33.09 E-value=34 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=9.1
Q ss_pred CCeEEEEccc
Q psy3868 48 SPSIIFIDEL 57 (69)
Q Consensus 48 ~p~iifiDEi 57 (69)
.|.+|++||-
T Consensus 165 ~p~lLllDEP 174 (266)
T 4g1u_C 165 TPRWLFLDEP 174 (266)
T ss_dssp CCEEEEECCC
T ss_pred CCCEEEEeCc
Confidence 8999999994
No 256
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=33.00 E-value=20 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.4
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+|++||+|.+..
T Consensus 125 ~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 125 DVSLIVFDEAHRAVG 139 (494)
T ss_dssp SCSEEEEETGGGCST
T ss_pred hceEEEEECCcccCC
Confidence 467899999999864
No 257
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=32.98 E-value=63 Score=18.18 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=9.6
Q ss_pred hcCCeEEEEccc
Q psy3868 46 KNSPSIIFIDEL 57 (69)
Q Consensus 46 ~~~p~iifiDEi 57 (69)
...|.++++||-
T Consensus 79 ~~~p~lllLDEP 90 (148)
T 1f2t_B 79 AGEISLLILDEP 90 (148)
T ss_dssp HSSCSEEEEESC
T ss_pred cCCCCEEEEECC
Confidence 467899999984
No 258
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=32.97 E-value=82 Score=18.96 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=31.3
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
++..|.+.|.|++.+++.++-+ .+..=.++.+..++.+|.++++=-.-.+.
T Consensus 43 ~~~~A~~~gIp~~~~~~~~~~~-----r~~~~~~~~~~l~~~~~Dliv~a~y~~il 93 (216)
T 2ywr_A 43 AIERCKKHNVECKVIQRKEFPS-----KKEFEERMALELKKKGVELVVLAGFMRIL 93 (216)
T ss_dssp HHHHHHHHTCCEEECCGGGSSS-----HHHHHHHHHHHHHHTTCCEEEESSCCSCC
T ss_pred HHHHHHHcCCCEEEeCcccccc-----hhhhhHHHHHHHHhcCCCEEEEeCchhhC
Confidence 3567888999999887765521 11111234555667788888775444443
No 259
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.95 E-value=52 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=12.4
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.+|++||-
T Consensus 157 lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 157 IARALMVNPRLAILDEP 173 (256)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33444578999999994
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=32.93 E-value=34 Score=21.40 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=11.0
Q ss_pred HHhcCCeEEEEccc
Q psy3868 44 ADKNSPSIIFIDEL 57 (69)
Q Consensus 44 a~~~~p~iifiDEi 57 (69)
|-...|.+|++||-
T Consensus 157 aL~~~P~lLlLDEP 170 (275)
T 3gfo_A 157 VLVMEPKVLILDEP 170 (275)
T ss_dssp HHTTCCSEEEEECT
T ss_pred HHHcCCCEEEEECc
Confidence 33468999999994
No 261
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=32.88 E-value=37 Score=17.73 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=11.3
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..++..|.++++|
T Consensus 38 a~~~~~~~~~dlvi~D 53 (140)
T 3n53_A 38 ALEQIDHHHPDLVILD 53 (140)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 4444455689999998
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=32.85 E-value=35 Score=21.06 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy3868 40 AFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 40 if~~a~~~~p~iifiDEid 58 (69)
.+..|-...|.+|++||--
T Consensus 148 ~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPL 166 (266)
T ss_dssp HHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHcCCCEEEEcCcc
Confidence 3444445789999999953
No 263
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=32.77 E-value=46 Score=17.80 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCcEEEEchh
Q psy3868 5 LTTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~ 23 (69)
.++.++...+.+++.+++-
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 128 EGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp HHHHHHHHTTCEEEECBGG
T ss_pred HHHHHHHHhCCcEEEeccC
Confidence 4556667777777777653
No 264
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=32.75 E-value=56 Score=19.95 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=11.5
Q ss_pred HHHhcCCeEEEEccc
Q psy3868 43 EADKNSPSIIFIDEL 57 (69)
Q Consensus 43 ~a~~~~p~iifiDEi 57 (69)
.|-...|.+|++||-
T Consensus 166 raL~~~p~lllLDEP 180 (257)
T 1g6h_A 166 RALMTNPKMIVMDEP 180 (257)
T ss_dssp HHHHTCCSEEEEEST
T ss_pred HHHHcCCCEEEEeCC
Confidence 334478999999994
No 265
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=32.74 E-value=13 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|+|||+|.+..
T Consensus 235 ~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 235 KIKVFVLDEADVMIA 249 (300)
T ss_dssp GCSEEEETTHHHHHH
T ss_pred hceEEEEeCHHHHhh
Confidence 357899999999864
No 266
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.70 E-value=37 Score=17.80 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy3868 39 KAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 39 ~if~~a~~~~p~iifiDE 56 (69)
+.++......|.+|++|-
T Consensus 42 ~a~~~l~~~~~dlii~D~ 59 (144)
T 3kht_A 42 KALYQVQQAKYDLIILDI 59 (144)
T ss_dssp HHHHHHTTCCCSEEEECT
T ss_pred HHHHHhhcCCCCEEEEeC
Confidence 345555667899999983
No 267
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=32.63 E-value=27 Score=20.69 Aligned_cols=18 Identities=0% Similarity=-0.154 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|.+++.+++..
T Consensus 30 sT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 30 GTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp HHHHHHHHHHHTCEEEEH
T ss_pred HHHHHHHHHHhCCceecH
Confidence 689999999999877654
No 268
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=32.56 E-value=56 Score=20.23 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=13.3
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy3868 40 AFEEADKNSPSIIFIDEL 57 (69)
Q Consensus 40 if~~a~~~~p~iifiDEi 57 (69)
.+..|-...|.++++||-
T Consensus 138 ~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEP 155 (263)
T ss_dssp HHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHhCCCEEEEECC
Confidence 344444578999999994
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=32.53 E-value=49 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy3868 40 AFEEADKNSPSIIFIDEL 57 (69)
Q Consensus 40 if~~a~~~~p~iifiDEi 57 (69)
.+.+|-...|.++++||-
T Consensus 137 ~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHHHHHCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEEeCc
Confidence 344444578999999995
No 270
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=32.52 E-value=46 Score=19.28 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCeEEEEccccc
Q psy3868 36 NLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 36 ~l~~if~~a~~~~p~iifiDEid~ 59 (69)
..+++.+..++..|.||.+-|++.
T Consensus 14 ~~~~i~~~i~~~~~DIv~LQE~~~ 37 (256)
T 2jc4_A 14 RLPQVQNLLADNPPDILVLQELKL 37 (256)
T ss_dssp HHHHHHHHHHSSCCSEEEEECCCS
T ss_pred HHHHHHHHHHhcCCCEEEEEeecc
Confidence 356777778888999999999875
No 271
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=32.49 E-value=19 Score=23.19 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh-cCCeEEEEccc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPSIIFIDEL 57 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~-~~p~iifiDEi 57 (69)
..+|+.+|..++.|+..+.... ...+++..|..... ....+|++|++
T Consensus 179 ~~~A~~la~~L~~p~~~l~k~r--------~~~~~~~~~~l~~~v~gk~VlLVDDi 226 (317)
T 1dku_A 179 VTRARKLADRLKAPIAIIDKRR--------PRPNVAEVMNIVGNIEGKTAILIDDI 226 (317)
T ss_dssp HHHHHHHHHHTTCCEEEEECC-----------------CEEESCCTTCEEEEECSE
T ss_pred HHHHHHHHHHhCCCEEEEEEEe--------ccccceeEEEecccCCCCEEEEEecc
Confidence 4688999999999887553211 12233333322111 23468888886
No 272
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.34 E-value=1e+02 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhCCcEEEEchh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~ 23 (69)
|++++.+|.+++.+++.++.-
T Consensus 19 Ttla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 19 TDLAMALADALPCELISVDSA 39 (323)
T ss_dssp HHHHHHHHHHSCEEEEEECTT
T ss_pred HHHHHHHHHHcCCcEEeccch
Confidence 689999999999888887654
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.30 E-value=21 Score=20.31 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=15.1
Q ss_pred hHHHHHHHHH-hCCcEEEEc
Q psy3868 3 YRLTTLCRDS-LGAFFFLIN 21 (69)
Q Consensus 3 T~la~aia~~-~~~~~~~v~ 21 (69)
|++++.++.. +|.+++..+
T Consensus 24 STv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 24 TSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp HHHHHHHHHHSTTEEEEEHH
T ss_pred HHHHHHHHHhcCCCEEeeHH
Confidence 6789999999 788776543
No 274
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.29 E-value=44 Score=16.76 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=11.2
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 36 a~~~~~~~~~dlil~D 51 (121)
T 2pl1_A 36 ADYYLNEHIPDIAIVD 51 (121)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhccCCCEEEEe
Confidence 3444456789999987
No 275
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=32.28 E-value=21 Score=21.33 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=10.4
Q ss_pred cCCeEEEEccccc
Q psy3868 47 NSPSIIFIDELDA 59 (69)
Q Consensus 47 ~~p~iifiDEid~ 59 (69)
..|.+|++||--+
T Consensus 121 ~~p~lllLDEPts 133 (208)
T 3b85_A 121 LNDAFVILDEAQN 133 (208)
T ss_dssp BCSEEEEECSGGG
T ss_pred cCCCEEEEeCCcc
Confidence 4799999999543
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=32.22 E-value=28 Score=20.27 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+|..++.+++..
T Consensus 18 sT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 18 GTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp HHHHHHHHHHHCCEEEEH
T ss_pred HHHHHHHHHHcCceEEeh
Confidence 689999999999877554
No 277
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=32.17 E-value=13 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-.+|++||+|.+..
T Consensus 130 ~~~iViDEah~~~~ 143 (337)
T 2z0m_A 130 FEIVIIDEADLMFE 143 (337)
T ss_dssp CSEEEEESHHHHHH
T ss_pred CcEEEEEChHHhhc
Confidence 47899999998753
No 278
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=32.12 E-value=87 Score=19.04 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=31.5
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
...|.+.|.|++.++..++-+ .+..=.++.+..++.+|.++++=-.-.+
T Consensus 47 ~~~A~~~gIp~~~~~~~~~~~-----r~~~d~~~~~~l~~~~~Dliv~agy~~i 95 (215)
T 3tqr_A 47 LKRAQQADIPTHIIPHEEFPS-----RTDFESTLQKTIDHYDPKLIVLAGFMRK 95 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSS-----HHHHHHHHHHHHHTTCCSEEEESSCCSC
T ss_pred HHHHHHcCCCEEEeCccccCc-----hhHhHHHHHHHHHhcCCCEEEEccchhh
Confidence 457889999999988765421 1222234666667788988887544333
No 279
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.10 E-value=51 Score=20.18 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 46 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~ 46 (69)
|..++..+|.+.|.+.+.+. +...+++.|+.|.+
T Consensus 160 G~~~~~~~A~~~Gl~~vlI~-----------s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 160 GAGLITDLAEEAGMTGIFIY-----------SAATVRQAFSDALD 193 (225)
T ss_dssp ESHHHHHHHHHTTSEEEESS-----------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcEEEEC-----------CHHHHHHHHHHHHH
Confidence 34567788999999887764 23566777777754
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=32.09 E-value=56 Score=19.90 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHhcCCeEEEEcccc
Q psy3868 41 FEEADKNSPSIIFIDELD 58 (69)
Q Consensus 41 f~~a~~~~p~iifiDEid 58 (69)
+..|-...|.+|++||--
T Consensus 156 iAraL~~~p~lllLDEPt 173 (247)
T 2ff7_A 156 IARALVNNPKILIFDEAT 173 (247)
T ss_dssp HHHHHTTCCSEEEECCCC
T ss_pred HHHHHhcCCCEEEEeCCc
Confidence 333445789999999953
No 281
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=32.09 E-value=56 Score=21.18 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhCCcEEEEch
Q psy3868 3 YRLTTLCRDSLGAFFFLING 22 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~ 22 (69)
...|+.+|..++.|+..+..
T Consensus 178 v~~A~~lA~~L~~p~~~i~K 197 (319)
T 3dah_A 178 VVRARALAKQLNCDLAIIDK 197 (319)
T ss_dssp HHHHHHHHHHTTCEEEC---
T ss_pred cHHHHHHHHHhCCCEEEEEE
Confidence 45788999999999876643
No 282
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.00 E-value=46 Score=17.74 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=12.0
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..+...|.+|++|-
T Consensus 50 a~~~l~~~~~dlvi~D~ 66 (153)
T 3hv2_A 50 ALQLLASREVDLVISAA 66 (153)
T ss_dssp HHHHHHHSCCSEEEEES
T ss_pred HHHHHHcCCCCEEEEeC
Confidence 44455567899999983
No 283
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=31.98 E-value=36 Score=17.52 Aligned_cols=16 Identities=19% Similarity=0.623 Sum_probs=10.9
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 40 a~~~~~~~~~dlvllD 55 (130)
T 1dz3_A 40 CLQMLEEKRPDILLLD 55 (130)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3444455679999987
No 284
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=31.95 E-value=39 Score=19.43 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHhcCCeEE
Q psy3868 32 ESESNLRKAFEEADKNSPSII 52 (69)
Q Consensus 32 es~~~l~~if~~a~~~~p~ii 52 (69)
++...|.+..+.+.+++|+++
T Consensus 38 eta~sLE~AIE~si~~QP~vv 58 (131)
T 2iec_A 38 GTAEEVAKCIERAALLQPCVI 58 (131)
T ss_dssp GGHHHHHHHHHHHHTTSTTEE
T ss_pred ccHHHHHHHHHHHHhcCCeEE
Confidence 577889999999999999993
No 285
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=31.93 E-value=43 Score=17.50 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=11.5
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 46 al~~l~~~~~dlvllD 61 (140)
T 3c97_A 46 ALQAYQNRQFDVIIMD 61 (140)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhcCCCCEEEEe
Confidence 4444556789999998
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=31.88 E-value=52 Score=19.70 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=13.3
Q ss_pred HHHHHhcCCeEEEEccccc
Q psy3868 41 FEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 41 f~~a~~~~p~iifiDEid~ 59 (69)
+..|-...|.++++||--+
T Consensus 144 laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp HHHHTTSCCSEEEEESTTT
T ss_pred HHHHHHhCCCEEEEECCCc
Confidence 3344457899999999543
No 287
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.81 E-value=43 Score=17.33 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
..+..+...|.++++|-
T Consensus 46 a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 46 AGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp HHHHHHHTCCSEEEEET
T ss_pred HHHHHHhcCCCEEEEec
Confidence 34445567899999983
No 288
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=31.76 E-value=39 Score=17.95 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy3868 39 KAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 39 ~if~~a~~~~p~iifiDE 56 (69)
+.++..+...|.+|++|-
T Consensus 57 ~al~~l~~~~~dlii~D~ 74 (150)
T 4e7p_A 57 EAIQLLEKESVDIAILDV 74 (150)
T ss_dssp HHHHHHTTSCCSEEEECS
T ss_pred HHHHHhhccCCCEEEEeC
Confidence 455556677899999983
No 289
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.74 E-value=37 Score=17.42 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.0
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 43 a~~~l~~~~~dlvi~d 58 (130)
T 3eod_A 43 ALELLGGFTPDLMICD 58 (130)
T ss_dssp HHHHHTTCCCSEEEEC
T ss_pred HHHHHhcCCCCEEEEe
Confidence 4455567789999998
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=31.64 E-value=36 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid 58 (69)
+...+..+-...|.+|++||+-
T Consensus 185 ~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 185 FSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp HHHHHHHHTTSCCSEEEESCCC
T ss_pred HHHHHHHHhhhCcCEEecCCCC
Confidence 4456666667899999999973
No 291
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=31.59 E-value=37 Score=21.12 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhccc-Ch---HHHHHHHHHHHHHhc
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKLA-GE---SESNLRKAFEEADKN 47 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~~-ge---s~~~l~~if~~a~~~ 47 (69)
..+++.+|+.++.+.+.+..+.+++.-- -+ .+..++++++.+++.
T Consensus 101 ~~i~~~lA~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~i~~vl~~~~~a 149 (267)
T 3kv1_A 101 DHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQARKA 149 (267)
T ss_dssp HHHHHHHHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCeEEEEecCcccCCHHHHHHHHhChHHHHHHHHHHhC
Confidence 5688999999999888888887765310 11 245678888887553
No 292
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.58 E-value=37 Score=17.24 Aligned_cols=16 Identities=19% Similarity=0.574 Sum_probs=10.8
Q ss_pred HHHHHhcCCeEEEEcc
Q psy3868 41 FEEADKNSPSIIFIDE 56 (69)
Q Consensus 41 f~~a~~~~p~iifiDE 56 (69)
++..+...|.++++|-
T Consensus 40 ~~~~~~~~~dlvl~D~ 55 (124)
T 1srr_A 40 LDIVTKERPDLVLLDM 55 (124)
T ss_dssp HHHHHHHCCSEEEEES
T ss_pred HHHHhccCCCEEEEec
Confidence 3444456799999873
No 293
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=31.55 E-value=27 Score=20.36 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChH---HHHHHHHHHHHHh--cCCeEEEEccccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGES---ESNLRKAFEEADK--NSPSIIFIDELDAIA 61 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges---~~~l~~if~~a~~--~~p~iifiDEid~i~ 61 (69)
+...+.+.+.|+++..+..+-....|.+ ..++....+..-. ..|. - |+.|+|+
T Consensus 87 ~~~a~~~~~ipv~eytp~~vKkavtG~G~A~K~qV~~mv~~ll~l~~~p~--~-DaADALA 144 (158)
T 1hjr_A 87 AIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ--A-DAADALA 144 (158)
T ss_dssp HHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCS--S-CTHHHHH
T ss_pred HHHHHHHcCCCEEEECHHHHHHHhhCCCCCcHHHHHHHHHHHcCCCCCCC--C-CHHHHHH
Confidence 4455677799999999999876554542 2334333333312 1244 2 8888875
No 294
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.54 E-value=37 Score=17.12 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=10.9
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 37 a~~~~~~~~~dlvi~D 52 (124)
T 1mb3_A 37 ALSIARENKPDLILMD 52 (124)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3344455679999987
No 295
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=31.53 E-value=28 Score=19.40 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhCCcEE
Q psy3868 3 YRLTTLCRDSLGAFFF 18 (69)
Q Consensus 3 T~la~aia~~~~~~~~ 18 (69)
|++++.++..++.+++
T Consensus 19 ST~a~~La~~l~~~~i 34 (183)
T 2vli_A 19 THTAHTLHERLPGSFV 34 (183)
T ss_dssp CHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHhcCCCEE
Confidence 6789999999999887
No 296
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=31.50 E-value=44 Score=17.43 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=11.5
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 47 al~~l~~~~~dlvi~d 62 (143)
T 2qv0_A 47 VLKFLQHNKVDAIFLD 62 (143)
T ss_dssp HHHHHHHCCCSEEEEC
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4444556779999998
No 297
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=31.40 E-value=30 Score=21.22 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhCCcEEE-----------Echhh--hh--hcccChHHHHHHHHHHHHHh-cCCeEEEEccccccc
Q psy3868 2 SYRLTTLCRDSLGAFFFL-----------INGPE--IM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIA 61 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~-----------v~~~~--l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~ 61 (69)
+-+++..+|.+++.++-. +.+.. |+ ..|...|.+.|+.+.+.-+- ....+++-||+|-=.
T Consensus 38 Gf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdLdLp~ 113 (205)
T 1ryb_A 38 GFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPN 113 (205)
T ss_dssp HHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCT
T ss_pred HHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHHHhCCCHHHEEEEeecccCCC
Confidence 345777888887765321 11111 11 22667788888877765432 123466669999644
No 298
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=31.35 E-value=28 Score=21.13 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCcEEE------------Echhh--hh--hcccChHHHHHHHHHHHHHh-cCCeEEEEccccccc
Q psy3868 3 YRLTTLCRDSLGAFFFL------------INGPE--IM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIA 61 (69)
Q Consensus 3 T~la~aia~~~~~~~~~------------v~~~~--l~--~~~~ges~~~l~~if~~a~~-~~p~iifiDEid~i~ 61 (69)
-+++..+|.+.+.++-. +.+.. |+ ..|...|.+.|+.+.+.-+- ....+++-||+|-=.
T Consensus 26 f~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldlp~ 101 (191)
T 2z2i_A 26 FVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEF 101 (191)
T ss_dssp HHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCT
T ss_pred HHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHhCCCHHHEEEEecccCCCC
Confidence 45677888887755421 11111 01 12666788888887765432 123566669999644
No 299
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=31.33 E-value=44 Score=17.50 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++......|.++++|
T Consensus 40 al~~~~~~~~dlvllD 55 (136)
T 2qzj_A 40 AIGKIFSNKYDLIFLE 55 (136)
T ss_dssp HHHHHHHCCCSEEEEE
T ss_pred HHHHHHhcCCCEEEEe
Confidence 4444556789999987
No 300
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=31.30 E-value=88 Score=18.84 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
++..|.+.|.|++.++..++-+ .+..=.++.+..++.+|.++++=-.-.+.
T Consensus 42 ~~~~A~~~gIp~~~~~~~~~~~-----r~~~~~~~~~~l~~~~~Dliv~agy~~il 92 (212)
T 1jkx_A 42 GLERARQAGIATHTLIASAFDS-----REAYDRELIHEIDMYAPDVVVLAGFMRIL 92 (212)
T ss_dssp HHHHHHHTTCEEEECCGGGCSS-----HHHHHHHHHHHHGGGCCSEEEESSCCSCC
T ss_pred HHHHHHHcCCcEEEeCcccccc-----hhhccHHHHHHHHhcCCCEEEEeChhhhC
Confidence 4567889999999887765521 11112335556667889888875444443
No 301
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=31.27 E-value=18 Score=24.94 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=13.0
Q ss_pred cCCeEEEEcccccccc
Q psy3868 47 NSPSIIFIDELDAIAP 62 (69)
Q Consensus 47 ~~p~iifiDEid~i~~ 62 (69)
.+..+||+|++.+++.
T Consensus 244 G~~VLl~~D~itR~a~ 259 (473)
T 1sky_E 244 GQDGLLFIDNIFRFTQ 259 (473)
T ss_dssp CCEEEEEEECTHHHHH
T ss_pred CCcEEEEeccHHHHHH
Confidence 4578999999998874
No 302
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=31.19 E-value=95 Score=19.77 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=26.4
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDE 56 (69)
++.+|.+.|.|++.++... ...+..=.++.+..++.+|.++++=-
T Consensus 135 ~~~~A~~~gIp~~~~~~~~------~~r~~~~~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 135 FAPLAAQHGLPFRHFPITA------DTKAQQEAQWLDVFETSGAELVILAR 179 (292)
T ss_dssp THHHHHHTTCCEEECCCCS------SCHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHcCCCEEEeCCCc------CCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 3567899999999875421 11111112345555666788877643
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=31.09 E-value=1.1e+02 Score=20.06 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.5
Q ss_pred HhcCCeEEEEccccccccc
Q psy3868 45 DKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 45 ~~~~p~iifiDEid~i~~~ 63 (69)
++..+.+|+||.+..+...
T Consensus 307 ~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHSCCCEEEEECGGGCBCC
T ss_pred HHcCCCEEEEcChhhcCCC
Confidence 3468999999999998653
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=31.03 E-value=37 Score=18.97 Aligned_cols=18 Identities=11% Similarity=-0.106 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 18 ST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 18 GTQASRLAQELGFKKLST 35 (186)
T ss_dssp HHHHHHHHHHHTCEEECH
T ss_pred HHHHHHHHHHhCCeEecH
Confidence 689999999999876543
No 305
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=31.02 E-value=53 Score=17.04 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy3868 39 KAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 39 ~if~~a~~~~p~iifiDE 56 (69)
+.++..+...|.++++|-
T Consensus 42 ~a~~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 42 QCIDLLKKGFSGVVLLDI 59 (142)
T ss_dssp HHHHHHHTCCCEEEEEES
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 345555567799999973
No 306
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.96 E-value=38 Score=17.58 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=10.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 41 al~~~~~~~~dlvilD 56 (133)
T 3b2n_A 41 AMKLIEEYNPNVVILD 56 (133)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHHhhcCCCEEEEe
Confidence 3344445679999987
No 307
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=30.83 E-value=50 Score=18.76 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHhcCCeE
Q psy3868 32 ESESNLRKAFEEADKNSPSI 51 (69)
Q Consensus 32 es~~~l~~if~~a~~~~p~i 51 (69)
++...|.+..+.+..++|++
T Consensus 46 eta~sLE~AIE~si~~QP~v 65 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCV 65 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTE
T ss_pred ccHHHHHHHHHHHHhcCCce
Confidence 56788999999999999987
No 308
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=30.72 E-value=49 Score=18.54 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
-..+.++.+.++.....+|++-++|.|++.
T Consensus 49 Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~ 78 (143)
T 3ilx_A 49 RKGFLKLLRMILNNEVSRVITAYPDRLVRF 78 (143)
T ss_dssp CHHHHHHHHHHHTTCEEEEEESSHHHHCSS
T ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCccccc
Confidence 456888888887776789999999999875
No 309
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=30.64 E-value=57 Score=18.02 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCcEEEEchh
Q psy3868 4 RLTTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~ 23 (69)
..++.++...+.+++.+++-
T Consensus 142 ~~~~~~~~~~~~~~~~~Sa~ 161 (196)
T 3tkl_A 142 TTAKEFADSLGIPFLETSAK 161 (196)
T ss_dssp HHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHHcCCcEEEEeCC
Confidence 35677888888898888764
No 310
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=30.57 E-value=46 Score=16.95 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=11.8
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 39 ~~~~~~~~~~dlvi~D 54 (126)
T 1dbw_A 39 FLAFAPDVRNGVLVTD 54 (126)
T ss_dssp HHHHGGGCCSEEEEEE
T ss_pred HHHHHhcCCCCEEEEE
Confidence 4455566789999998
No 311
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.49 E-value=42 Score=17.83 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=11.7
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..+...|.++++|-
T Consensus 53 a~~~l~~~~~dlii~d~ 69 (152)
T 3eul_A 53 ALELIKAHLPDVALLDY 69 (152)
T ss_dssp HHHHHHHHCCSEEEEET
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 44445556799999983
No 312
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=30.45 E-value=50 Score=21.54 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhhc
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMSK 28 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~~ 28 (69)
+||+..-.+|++.+.||+.+.++.-++.
T Consensus 230 iGT~~lAl~Ak~~~vPfyV~a~~~k~d~ 257 (338)
T 3a11_A 230 IGTALIALTAKEHRVWTMIAAETYKFHP 257 (338)
T ss_dssp TTHHHHHHHHHHTTCEEEEECCGGGBCS
T ss_pred ccHHHHHHHHHHcCCCEEEecccceecc
Confidence 5789999999999999999877655443
No 313
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=30.38 E-value=52 Score=21.07 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
+...++++.+.++++ ...|+.||+..-
T Consensus 209 ~~~~l~~l~~~a~~~-~~~li~De~~~~ 235 (425)
T 2r2n_A 209 TSERKKEIYELARKY-DFLIIEDDPYYF 235 (425)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTGG
T ss_pred CHHHHHHHHHHHHHc-CCEEEEECCccc
Confidence 466788898888775 678889999874
No 314
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=30.35 E-value=15 Score=23.25 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.1
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 176 ~~~iViDEah~~~~ 189 (417)
T 2i4i_A 176 CKYLVLDEADRMLD 189 (417)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEEChhHhhc
Confidence 46799999998753
No 315
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=30.34 E-value=61 Score=21.47 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+.++.+......|.+|+||++-.+..
T Consensus 262 l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 262 LDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHhcCCceEEecchhhhCc
Confidence 34444445557899999999988875
No 316
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=30.26 E-value=47 Score=17.61 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
..+......|.++++|
T Consensus 50 al~~~~~~~~dlvl~D 65 (143)
T 3m6m_D 50 VLDAMAEEDYDAVIVD 65 (143)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3444556789999997
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.25 E-value=39 Score=19.33 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 32 STla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 32 SSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp HHHHHHHHHHHTCCEEEG
T ss_pred HHHHHHHHHHhCCEEEeC
Confidence 689999999999877653
No 318
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=30.23 E-value=50 Score=18.61 Aligned_cols=18 Identities=17% Similarity=0.192 Sum_probs=10.4
Q ss_pred HHHHHHHHhCCcEEEEch
Q psy3868 5 LTTLCRDSLGAFFFLING 22 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~ 22 (69)
.++.++.+.+.+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~~SA 178 (199)
T 2p5s_A 161 FGEKLAMTYGALFCETSA 178 (199)
T ss_dssp HHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHcCCeEEEeeC
Confidence 345555666666666654
No 319
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.21 E-value=48 Score=17.13 Aligned_cols=16 Identities=0% Similarity=0.150 Sum_probs=11.3
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 39 al~~~~~~~~dlvl~D 54 (132)
T 3crn_A 39 GLAKIENEFFNLALFX 54 (132)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3444556789999987
No 320
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=30.01 E-value=8.3 Score=25.63 Aligned_cols=17 Identities=0% Similarity=-0.048 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++++|+.++.+|+.
T Consensus 38 TTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 38 STIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeee
Confidence 78999999999998866
No 321
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=29.95 E-value=16 Score=22.56 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-.++++||+|.+..
T Consensus 148 ~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 148 VKYFILDEADEMLN 161 (367)
T ss_dssp CCEEEEETHHHHHT
T ss_pred CCEEEEeCchHhhh
Confidence 47899999998753
No 322
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=29.94 E-value=52 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
...++++.+.++++ ...|+.||+..-+
T Consensus 183 ~~~l~~i~~~~~~~-~~~li~De~~~~~ 209 (385)
T 1b5p_A 183 KEVLEALARLAVEH-DFYLVSDEIYEHL 209 (385)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECTTTTC
T ss_pred HHHHHHHHHHHHHc-CCEEEEEccchhc
Confidence 57788898888765 6888999998754
No 323
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.90 E-value=40 Score=17.56 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy3868 39 KAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 39 ~if~~a~~~~p~iifiDE 56 (69)
+.++..+...|.++++|-
T Consensus 39 ~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 39 EAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHhccCCCEEEEeC
Confidence 345555667899999984
No 324
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=29.88 E-value=50 Score=16.61 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=11.2
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 39 a~~~~~~~~~dlvi~D 54 (123)
T 1xhf_A 39 MHQILSEYDINLVIMD 54 (123)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHhcCCCCEEEEc
Confidence 3444556789999987
No 325
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=29.82 E-value=41 Score=21.43 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhCCcEEEEchhhhh--------hcccChHHHHHHHHHHHH
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPEIM--------SKLAGESESNLRKAFEEA 44 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~l~--------~~~~ges~~~l~~if~~a 44 (69)
+.-+++.||+++|.++..+++..-. ..|.+--..+++.+-+..
T Consensus 250 ~~~~~~~ia~e~g~~v~~l~~l~~~~~~~~~~~~~Y~~~m~~n~~~l~~aL 300 (312)
T 2o1e_A 250 SSKVADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSL 300 (312)
T ss_dssp CHHHHHHHHHHTCCEEECCCCTTCCCHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCcEEEeccccccccccCCcccCHHHHHHHHHHHHHHHh
Confidence 3457899999999998887653221 134444555555554433
No 326
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.80 E-value=42 Score=16.86 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=10.8
Q ss_pred HHHHHhcCCeEEEEcc
Q psy3868 41 FEEADKNSPSIIFIDE 56 (69)
Q Consensus 41 f~~a~~~~p~iifiDE 56 (69)
++..+...|.++++|-
T Consensus 42 ~~~~~~~~~dlvi~d~ 57 (127)
T 2gkg_A 42 VEQIRRDRPDLVVLAV 57 (127)
T ss_dssp HHHHHHHCCSEEEEES
T ss_pred HHHHHhcCCCEEEEeC
Confidence 3444456799999873
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=29.73 E-value=38 Score=20.84 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.2
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.+|++||-
T Consensus 166 lAraL~~~p~lllLDEP 182 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEA 182 (260)
T ss_dssp HHHHHHHCCSEEEEECC
T ss_pred HHHHHHcCCCEEEEECc
Confidence 33344468999999995
No 328
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=29.63 E-value=58 Score=19.65 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=13.2
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy3868 40 AFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 40 if~~a~~~~p~iifiDEid 58 (69)
.+..|-...|.+|++||--
T Consensus 149 ~lAral~~~p~lllLDEPt 167 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEAT 167 (243)
T ss_dssp HHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHhcCCCEEEEECCc
Confidence 3334445689999999953
No 329
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=29.61 E-value=45 Score=21.10 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++-+.++++ ...|++||+..
T Consensus 218 ~~~~l~~l~~l~~~~-~~~li~De~~~ 243 (426)
T 1sff_A 218 SPAFMQRLRALCDEH-GIMLIADEVQS 243 (426)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTT
T ss_pred CHHHHHHHHHHHHHc-CCEEEEechhh
Confidence 566788888888775 57888999998
No 330
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=29.60 E-value=95 Score=18.67 Aligned_cols=49 Identities=12% Similarity=-0.091 Sum_probs=30.0
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
+..|.+.|.|++.+++.++-++ +.-=.++.+..++.+|.++++=-.-.+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r-----~~~~~~~~~~l~~~~~Dliv~a~y~~i 91 (209)
T 1meo_A 43 LDKAERAGIPTRVINHKLYKNR-----VEFDSAIDLVLEEFSIDIVCLAGFMRI 91 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSSH-----HHHHHHHHHHHHHTTCCEEEEESCCSC
T ss_pred HHHHHHcCCCEEEECccccCch-----hhhhHHHHHHHHhcCCCEEEEcchhhh
Confidence 4568889999998887665221 111123455556678888876444333
No 331
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=29.52 E-value=48 Score=18.12 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
..+.+++..|.++++|
T Consensus 45 Al~~~~~~~~DlvllD 60 (123)
T 2lpm_A 45 ALDIARKGQFDIAIID 60 (123)
T ss_dssp HHHHHHHCCSSEEEEC
T ss_pred HHHHHHhCCCCEEEEe
Confidence 4455667889999987
No 332
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=29.51 E-value=51 Score=21.15 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++-+.++++ ..+|++||+...+.
T Consensus 227 ~~~~l~~l~~l~~~~-~~~li~Dea~~~~~ 255 (449)
T 3qgu_A 227 TRAQLTELVNFARKN-GSILVYDAAYALYI 255 (449)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTGGGC
T ss_pred CHHHHHHHHHHHHHC-CcEEEEEcchHhhh
Confidence 345688888888665 68889999988753
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=29.48 E-value=1e+02 Score=19.05 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhCCcEEEEchhhh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEI 25 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l 25 (69)
|++++.++.+++..++.+++..+
T Consensus 47 STla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 47 TSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHhCCCeEEEechHh
Confidence 67899999988555677777555
No 334
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=29.41 E-value=47 Score=21.18 Aligned_cols=28 Identities=36% Similarity=0.337 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++.+.++++ ..+|++||+..-+
T Consensus 216 ~~~~l~~l~~la~~~-~~~li~Dea~~~~ 243 (432)
T 3ei9_A 216 TREQLTQLVEFAKKN-GSIIVYDSAYAMY 243 (432)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTGGG
T ss_pred CHHHHHHHHHHHHHc-CcEEEEccchHhh
Confidence 455788888888765 6788899998844
No 335
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.36 E-value=28 Score=23.71 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.8
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+++|||.|.+..
T Consensus 173 ~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 173 REYMIVIDEAHNLDK 187 (551)
T ss_dssp TTEEEEETTGGGGGG
T ss_pred CCeEEEEecccchHH
Confidence 567899999999875
No 336
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.28 E-value=78 Score=17.58 Aligned_cols=45 Identities=16% Similarity=-0.042 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHH--------HhcCCeEEEEccc
Q psy3868 5 LTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEA--------DKNSPSIIFIDEL 57 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a--------~~~~p~iifiDEi 57 (69)
-|+.+-...|++|-+++.+. .+..-.++.+.+ -...|..||||+-
T Consensus 21 ~aK~lL~~kgV~feEidI~~--------d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~ 73 (121)
T 1u6t_A 21 DVLGFLEANKIGFEEKDIAA--------NEENRKWMRENVPENSRPATGYPLPPQIFNESQ 73 (121)
T ss_dssp HHHHHHHHTTCCEEEEECTT--------CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTE
T ss_pred HHHHHHHHCCCceEEEECCC--------CHHHHHHHHHhccccccccCCCcCCCEEEECCE
Confidence 56777788899998887753 122223444444 2235778999873
No 337
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=29.26 E-value=16 Score=22.73 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-.+|++||+|.+..
T Consensus 145 ~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 145 KIKIFVLDEADNMLD 159 (395)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred cCCEEEEEChhhhcC
Confidence 457899999998764
No 338
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=29.26 E-value=55 Score=21.55 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIM 26 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~ 26 (69)
+||+..-.+|++.+.||+.+.++.-+
T Consensus 245 iGT~~lAl~Ak~~~vPfyV~a~~~k~ 270 (351)
T 1t5o_A 245 IGTYTVSVVAKHHNIPFYVAAPKATF 270 (351)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGGGB
T ss_pred cCHHHHHHHHHHcCCCEEEeCcccee
Confidence 57899999999999999998776544
No 339
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=29.15 E-value=73 Score=19.69 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
...++++-+.++++ ...+++||+...+.
T Consensus 183 ~~~l~~i~~~~~~~-~~~li~De~~~~~~ 210 (391)
T 4dq6_A 183 KDELKKLGDICLKH-NVKIISDEIHSDII 210 (391)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECTTTTCB
T ss_pred HHHHHHHHHHHHHc-CCEEEeeccccccc
Confidence 35688888888765 68888999987654
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=28.95 E-value=66 Score=17.39 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.3
Q ss_pred HHHHhCCcEEEEc
Q psy3868 9 CRDSLGAFFFLIN 21 (69)
Q Consensus 9 ia~~~~~~~~~v~ 21 (69)
++.+.+++++.++
T Consensus 141 ~~~~~~~~~~~~S 153 (178)
T 2hxs_A 141 FCQENGFSSHFVS 153 (178)
T ss_dssp HHHHHTCEEEEEC
T ss_pred HHHHcCCcEEEEe
Confidence 3334444444443
No 341
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=28.95 E-value=24 Score=25.37 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+..++.+.....-..+.+|++||+|.
T Consensus 194 G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 194 GMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp HHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred HHHHHHHhhCccccCCCEEEecCccc
Confidence 34444454443346789999999995
No 342
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=28.86 E-value=19 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-.+|++||+|.+..
T Consensus 164 ~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 164 CSLFIMDEADKMLS 177 (400)
T ss_dssp CCEEEEESHHHHSS
T ss_pred CCEEEEeCchHhhh
Confidence 47899999998754
No 343
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=28.75 E-value=45 Score=16.61 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=9.8
Q ss_pred HHHHhcCCeEEEEc
Q psy3868 42 EEADKNSPSIIFID 55 (69)
Q Consensus 42 ~~a~~~~p~iifiD 55 (69)
+..+...|.++++|
T Consensus 39 ~~~~~~~~dlvl~D 52 (120)
T 2a9o_A 39 EQFEAEQPDIIILD 52 (120)
T ss_dssp HHHHHHCCSEEEEC
T ss_pred HHHHhCCCCEEEEe
Confidence 33445679999987
No 344
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=28.71 E-value=50 Score=18.42 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCcEEEEch
Q psy3868 5 LTTLCRDSLGAFFFLING 22 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~ 22 (69)
.++.++...+.+++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~Sa 167 (191)
T 3dz8_A 150 KGQLLAEQLGFDFFEASA 167 (191)
T ss_dssp HHHHHHHHHTCEEEECBT
T ss_pred HHHHHHHHcCCeEEEEEC
Confidence 455667777777777765
No 345
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.71 E-value=53 Score=17.42 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=12.2
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..+...|.++++|-
T Consensus 43 a~~~l~~~~~dlii~D~ 59 (153)
T 3cz5_A 43 AYRLYRETTPDIVVMDL 59 (153)
T ss_dssp HHHHHHTTCCSEEEECS
T ss_pred HHHHHhcCCCCEEEEec
Confidence 45555667799999973
No 346
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.60 E-value=39 Score=18.95 Aligned_cols=23 Identities=4% Similarity=0.015 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhCCcEEEEchhhh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEI 25 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l 25 (69)
|++++.++...+...+.++..++
T Consensus 23 STl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 23 STIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp HHHHHHHHTCSSSCEEEECTTHH
T ss_pred HHHHHHHHhccCCCeEEEcccch
Confidence 67899999988778778877665
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.55 E-value=33 Score=19.56 Aligned_cols=18 Identities=0% Similarity=-0.252 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 29 sT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 29 GTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp HHHHHHHHHHSSCEEEEH
T ss_pred HHHHHHHHHHcCceEEeH
Confidence 678999999999877654
No 348
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=28.55 E-value=17 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.1
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|++||+|.+..
T Consensus 168 ~~~~iViDEah~~~~ 182 (412)
T 3fht_A 168 KIKVFVLDEADVMIA 182 (412)
T ss_dssp GCCEEEEETHHHHHS
T ss_pred hCcEEEEeCHHHHhh
Confidence 457899999998754
No 349
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=28.54 E-value=55 Score=16.44 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 38 ~~~~~~~~~~dlvi~d 53 (122)
T 1zgz_A 38 LREIMQNQSVDLILLD 53 (122)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3344456679999987
No 350
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=28.51 E-value=23 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
....|++||+|.+..
T Consensus 179 ~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 179 AIKMLVLDEADEMLN 193 (410)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred heeEEEEccHHHHHh
Confidence 357899999998754
No 351
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=28.51 E-value=67 Score=20.55 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCcEEEEchhhhhhcccCh
Q psy3868 5 LTTLCRDSLGAFFFLINGPEIMSKLAGE 32 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~~l~~~~~ge 32 (69)
+.-+++.+.|+|+..+.+-.-++.++|.
T Consensus 161 fLPaLC~k~gVPY~iVk~KarLG~~vgr 188 (258)
T 3iz5_H 161 WLPALCRKMEVPYCIVKGKARLGSIVHK 188 (258)
T ss_dssp HHHHHHTTTTCCEEEESCHHHHHHHTTC
T ss_pred HHHHHHHhcCCCeEEECCHHHHHHHhCC
Confidence 4568999999999999887777776663
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=28.45 E-value=41 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCeEEEEccccc
Q psy3868 36 NLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 36 ~l~~if~~a~~~~p~iifiDEid~ 59 (69)
..+.....|-...|.+|++||.-+
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCS
T ss_pred hHHHHHHHHhhhCCCEEEEcCCCh
Confidence 344566666667899999999754
No 353
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=28.40 E-value=58 Score=21.40 Aligned_cols=27 Identities=4% Similarity=0.017 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
+||+..-.+|++.+.||+.+.++.-++
T Consensus 248 iGT~~lAl~Ak~~~vPfyV~ap~~k~d 274 (347)
T 1t9k_A 248 IGTYSLAVLAKRNNIPFYVAAPVSTID 274 (347)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGGGEE
T ss_pred ccHHHHHHHHHHcCCCEEEecccceec
Confidence 578889999999999999987755443
No 354
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.37 E-value=45 Score=17.49 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=11.0
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 40 a~~~l~~~~~dlvllD 55 (137)
T 3cfy_A 40 AIQFIERSKPQLIILD 55 (137)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3444455689999988
No 355
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=28.25 E-value=70 Score=16.69 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
+.++.++..+. +.+-.+|++||.+-=
T Consensus 37 ~~kv~qv~~qL-~~GeavIvfse~~Es 62 (78)
T 1y0n_A 37 DVRVERARHAL-RRGEAVILFDPESQQ 62 (78)
T ss_dssp HHHHHHHHHHH-HTTSEEEEECTTTCC
T ss_pred HHHHHHHHHHH-HcCCEEEEECCCCCe
Confidence 45566666666 346788888997753
No 356
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.24 E-value=52 Score=16.08 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=10.2
Q ss_pred HHHHhcCCeEEEEcc
Q psy3868 42 EEADKNSPSIIFIDE 56 (69)
Q Consensus 42 ~~a~~~~p~iifiDE 56 (69)
+..+...|.++++|-
T Consensus 39 ~~l~~~~~dlii~d~ 53 (119)
T 2j48_A 39 DQLDLLQPIVILMAW 53 (119)
T ss_dssp HHHHHHCCSEEEEEC
T ss_pred HHHHhcCCCEEEEec
Confidence 334455799999883
No 357
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.15 E-value=48 Score=17.75 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCeEEEEc
Q psy3868 39 KAFEEADKNSPSIIFID 55 (69)
Q Consensus 39 ~if~~a~~~~p~iifiD 55 (69)
+.++..+...|.+|++|
T Consensus 42 ~al~~l~~~~~dlii~D 58 (154)
T 3gt7_A 42 EAVRFLSLTRPDLIISD 58 (154)
T ss_dssp HHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 34455566789999998
No 358
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=28.14 E-value=53 Score=16.70 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 43 a~~~~~~~~~dlvl~D 58 (129)
T 1p6q_A 43 GMKIMAQNPHHLVISD 58 (129)
T ss_dssp HHHHHHTSCCSEEEEC
T ss_pred HHHHHHcCCCCEEEEe
Confidence 3444556789999987
No 359
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=27.99 E-value=50 Score=17.01 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=11.0
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 46 a~~~~~~~~~dlii~d 61 (140)
T 3cg0_A 46 AVRCAPDLRPDIALVD 61 (140)
T ss_dssp HHHHHHHHCCSEEEEE
T ss_pred HHHHHHhCCCCEEEEe
Confidence 3344445679999998
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.98 E-value=33 Score=20.14 Aligned_cols=18 Identities=0% Similarity=-0.153 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..++.+++..
T Consensus 21 sT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 21 GTVSSRITTHFELKHLSS 38 (227)
T ss_dssp HHHHHHHHHHSSSEEEEH
T ss_pred HHHHHHHHHHcCCeEEec
Confidence 689999999999877644
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=27.89 E-value=87 Score=17.70 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+++ +|.+++..
T Consensus 15 STl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 15 STVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp HHHHHHHHH-TTCEEEEH
T ss_pred HHHHHHHHH-CCCEEEEc
Confidence 678999999 88777654
No 362
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=27.81 E-value=62 Score=16.96 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=11.4
Q ss_pred HHHHHHhc-CCeEEEEc
Q psy3868 40 AFEEADKN-SPSIIFID 55 (69)
Q Consensus 40 if~~a~~~-~p~iifiD 55 (69)
.++..+.. .|.++++|
T Consensus 51 al~~l~~~~~~dlvilD 67 (145)
T 3kyj_B 51 ALDKLAAQPNVDLILLD 67 (145)
T ss_dssp HHHHHHHCTTCCEEEEC
T ss_pred HHHHHhcCCCCCEEEEe
Confidence 44445556 79999998
No 363
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=27.78 E-value=97 Score=19.89 Aligned_cols=46 Identities=2% Similarity=0.057 Sum_probs=27.2
Q ss_pred HHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEccc
Q psy3868 6 TTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEi 57 (69)
++.+|.+.|.|++.++... ...+..=.++.+..++.+|.++++=-.
T Consensus 145 ~~~~A~~~gIp~~~~~~~~------~~r~~~~~~~~~~l~~~~~DliVlagy 190 (302)
T 3o1l_A 145 LRSMVEWHDIPYYHVPVDP------KDKEPAFAEVSRLVGHHQADVVVLARY 190 (302)
T ss_dssp THHHHHTTTCCEEECCCCS------SCCHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHcCCCEEEcCCCc------CCHHHHHHHHHHHHHHhCCCEEEHhHh
Confidence 3567889999999885422 111112233555566678888876433
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=27.78 E-value=55 Score=18.40 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=11.0
Q ss_pred hcCCeEEEEccccc
Q psy3868 46 KNSPSIIFIDELDA 59 (69)
Q Consensus 46 ~~~p~iifiDEid~ 59 (69)
...|.+|++||=-+
T Consensus 99 ~~~p~~lllDEPt~ 112 (171)
T 4gp7_A 99 HCFPVAVVFNLPEK 112 (171)
T ss_dssp TCEEEEEEECCCHH
T ss_pred CCcEEEEEEeCCHH
Confidence 46799999999543
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=27.75 E-value=38 Score=19.49 Aligned_cols=18 Identities=0% Similarity=-0.271 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++.++|.+++..
T Consensus 14 sT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 14 GTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp HHHHHHHHHHHCCCEEEH
T ss_pred HHHHHHHHHHhCCcEeeH
Confidence 678999999999877644
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.73 E-value=67 Score=17.04 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.4
Q ss_pred HHHHHHhCCcEEEEch
Q psy3868 7 TLCRDSLGAFFFLING 22 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~ 22 (69)
+.++...+.+++.+++
T Consensus 135 ~~~~~~~~~~~~~~Sa 150 (170)
T 1ek0_A 135 EKLAEEKGLLFFETSA 150 (170)
T ss_dssp HHHHHHHTCEEEECCT
T ss_pred HHHHHHcCCEEEEEeC
Confidence 3444444555544443
No 367
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.65 E-value=56 Score=17.02 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=10.9
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++......|.++++|
T Consensus 39 al~~l~~~~~dlvi~D 54 (138)
T 3c3m_A 39 CLEALNATPPDLVLLD 54 (138)
T ss_dssp HHHHHHHSCCSEEEEE
T ss_pred HHHHHhccCCCEEEEe
Confidence 3344456679999987
No 368
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=27.64 E-value=60 Score=21.67 Aligned_cols=27 Identities=4% Similarity=0.063 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
+||+..-.+|++.+.||+.+.++.-++
T Consensus 277 iGTy~lAl~Ak~~~vPfyV~ap~~k~d 303 (383)
T 2a0u_A 277 IGTYNLAVSAKFHGVKLYVAAPTTTLD 303 (383)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGGGBC
T ss_pred ccHHHHHHHHHHcCCCEEEeCCcceec
Confidence 578999999999999999987765544
No 369
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=27.62 E-value=63 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++.+.++ ....+++||+..-+.
T Consensus 164 ~~~~l~~l~~~~~--~~~~li~De~~~~~~ 191 (356)
T 1fg7_A 164 NPQDFRTLLELTR--GKAIVVADEAYIEFC 191 (356)
T ss_dssp CHHHHHHHHHHHT--TTCEEEEECTTGGGS
T ss_pred CHHHHHHHHHhCC--CCCEEEEEccchhhc
Confidence 3567888888875 568899999988543
No 370
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=27.60 E-value=61 Score=21.58 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
+||+..-.+|++.+.||+.+.++.-++
T Consensus 273 iGTy~lAl~Ak~~~vPfyV~ap~~k~d 299 (374)
T 2yvk_A 273 IGTYGLAILANAFDIPFFVAAPLSTFD 299 (374)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGGGEE
T ss_pred ccHHHHHHHHHHcCCCEEEecccceeC
Confidence 578989999999999999987765544
No 371
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=27.41 E-value=18 Score=22.63 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
....|++||+|.+..
T Consensus 152 ~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 152 HIKHFILDECDKMLE 166 (391)
T ss_dssp TCSEEEECSHHHHTS
T ss_pred ccCEEEEeCHHHHhh
Confidence 456799999998854
No 372
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=27.35 E-value=1.2e+02 Score=19.49 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++-+.++++ ..+|++||+..
T Consensus 220 ~~~~l~~l~~l~~~~-g~~lI~DEv~~ 245 (453)
T 2cy8_A 220 SDSFLREGAELARQY-GALFILDEVIS 245 (453)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTT
T ss_pred CHHHHHHHHHHHHHc-CCEEEEecCcc
Confidence 456678888888764 67889999987
No 373
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=27.30 E-value=28 Score=21.10 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHHh-cCCeEEEEccccccccccc
Q psy3868 37 LRKAFEEADK-NSPSIIFIDELDAIAPKRE 65 (69)
Q Consensus 37 l~~if~~a~~-~~p~iifiDEid~i~~~r~ 65 (69)
+.++-+..++ .+|.+|++|=++.+.+++.
T Consensus 45 L~~iv~~ik~~gK~vivh~DlI~GLs~d~~ 74 (188)
T 1vkf_A 45 LKFHLKILKDRGKTVFVDMDFVNGLGEGEE 74 (188)
T ss_dssp HHHHHHHHHHTTCEEEEEGGGEETCCSSHH
T ss_pred HHHHHHHHHHCCCeEEEecCcccccCCCHH
Confidence 6666666644 6799999999999987654
No 374
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=27.30 E-value=46 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHH----HHHhcCCeE
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFE----EADKNSPSI 51 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~----~a~~~~p~i 51 (69)
+.+..+|.+.|+|+...+. +++. ..++..|++-|+ .|+++.-+|
T Consensus 167 S~a~~~A~~~gvp~~~rdv--FLD~--~~~~~~I~~qL~~a~~~Ar~~G~AI 214 (261)
T 2qv5_A 167 SLSGGIAKAISAPQGFADV--LLDG--EVTEASILRKLDDLERIARRNGQAI 214 (261)
T ss_dssp CCHHHHHHHHTCCEEECSE--ETTS--SCSHHHHHHHHHHHHHHHHHHSEEE
T ss_pred cHHHHHHHHcCCCeEEeee--ecCC--CCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 5788899999998876322 2332 234555555554 455554443
No 375
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=27.22 E-value=59 Score=20.08 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc-cc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA-IA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~-i~ 61 (69)
+...++++-+.++++ ...+++||+.. +.
T Consensus 191 ~~~~l~~i~~~~~~~-~~~li~De~~~~~~ 219 (375)
T 2eh6_A 191 SEDFLSKLQEICKEK-DVLLIIDEVQTGIG 219 (375)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTTTTT
T ss_pred CHHHHHHHHHHHHHh-CCEEEEeccccCCC
Confidence 456688888888775 57888999998 54
No 376
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=27.07 E-value=56 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid 58 (69)
..+.+.+.+..+...|.||.+-|++
T Consensus 136 ~~R~~~I~~~I~~~~PDIV~LQEv~ 160 (362)
T 4gew_A 136 LTRMKAVAHIVKNVNPDILFLQEVV 160 (362)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4567778888888999999999984
No 377
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=27.07 E-value=41 Score=19.90 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 35 SNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 35 ~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
.+...+.+..++..|.||.+-|++.
T Consensus 25 ~r~~~i~~~i~~~~~DIv~LQEv~~ 49 (267)
T 3g6s_A 25 YRKDRVCQFIKDHELDIVGMQEVLH 49 (267)
T ss_dssp GTHHHHHHHHHHTTCSEEEEESBCH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCH
Confidence 4556777777788999999999873
No 378
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=26.99 E-value=55 Score=16.86 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
..+..+...|.++++|-
T Consensus 39 a~~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 39 LSTVLREENPEVVLLDM 55 (140)
T ss_dssp HHHHHHHSCEEEEEEET
T ss_pred HHHHHHcCCCCEEEEeC
Confidence 44445567799999983
No 379
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=26.93 E-value=23 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...++++||+|.+..
T Consensus 162 ~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 162 KIKMFILDEADEMLS 176 (394)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEEChHHhhC
Confidence 457899999998743
No 380
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=26.89 E-value=1.1e+02 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++-+.++++ ..+|++||+..
T Consensus 222 ~~~~l~~l~~l~~~~-g~~lI~DEv~~ 247 (434)
T 2epj_A 222 RREFLAALQRLSRES-GALLILDEVVT 247 (434)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEEETTT
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEcchh
Confidence 566688888888775 68888999998
No 381
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=26.84 E-value=52 Score=19.14 Aligned_cols=23 Identities=22% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCeEEEEccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~ 59 (69)
++++.+..++..|.||.+-|++.
T Consensus 16 ~~~i~~~i~~~~~Dii~lQE~~~ 38 (257)
T 2voa_A 16 LHIVIPWLKENKPDILCMQETKV 38 (257)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEEEeec
Confidence 35577777778999999999964
No 382
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=26.82 E-value=29 Score=22.73 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=12.2
Q ss_pred CeEEEEccccccccc
Q psy3868 49 PSIIFIDELDAIAPK 63 (69)
Q Consensus 49 p~iifiDEid~i~~~ 63 (69)
-..|++||+|.+...
T Consensus 128 ~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 128 FTLMIFDECHNTSKN 142 (555)
T ss_dssp CSEEEETTGGGCSTT
T ss_pred CCEEEEECccccCCc
Confidence 478999999998653
No 383
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.81 E-value=59 Score=16.82 Aligned_cols=9 Identities=67% Similarity=0.840 Sum_probs=7.8
Q ss_pred cCCeEEEEc
Q psy3868 47 NSPSIIFID 55 (69)
Q Consensus 47 ~~p~iifiD 55 (69)
..|.++++|
T Consensus 59 ~~~dlvi~D 67 (146)
T 3ilh_A 59 RWPSIICID 67 (146)
T ss_dssp CCCSEEEEE
T ss_pred CCCCEEEEc
Confidence 679999997
No 384
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=26.73 E-value=64 Score=20.18 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++-+.++++ ...|++||+..
T Consensus 202 ~~~~l~~l~~l~~~~-~~~li~De~~~ 227 (406)
T 4adb_A 202 SNAFLQGLRELCNRH-NALLIFDEVQT 227 (406)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTT
T ss_pred CHHHHHHHHHHHHHc-CCEEEEecccc
Confidence 667889999988775 68888999996
No 385
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=26.69 E-value=80 Score=19.17 Aligned_cols=26 Identities=8% Similarity=-0.157 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
..+...+.+..++..|.||.+-|++.
T Consensus 29 ~~r~~~i~~~i~~~~~DIv~LQEv~~ 54 (298)
T 3mpr_A 29 GQRYPVIAQMVQYHDFDIFGTQECFL 54 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESBCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 45567778888888999999999973
No 386
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=26.64 E-value=63 Score=17.64 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCcEEEEch
Q psy3868 5 LTTLCRDSLGAFFFLING 22 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~ 22 (69)
-++.++.+.+.+++.+++
T Consensus 135 ~~~~~~~~~~~~~~~~Sa 152 (183)
T 2fu5_C 135 RGEKLALDYGIKFMETSA 152 (183)
T ss_dssp HHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHcCCeEEEEeC
Confidence 345666677777777655
No 387
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=26.55 E-value=51 Score=16.95 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=9.9
Q ss_pred HHHHhcCCeEEEEc
Q psy3868 42 EEADKNSPSIIFID 55 (69)
Q Consensus 42 ~~a~~~~p~iifiD 55 (69)
+..+...|.++++|
T Consensus 41 ~~~~~~~~dlvl~D 54 (136)
T 1mvo_A 41 KKAETEKPDLIVLD 54 (136)
T ss_dssp HHHHHHCCSEEEEE
T ss_pred HHHhhcCCCEEEEe
Confidence 34445678999987
No 388
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.46 E-value=55 Score=17.12 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=10.5
Q ss_pred HHHHHhcCCeEEEEc
Q psy3868 41 FEEADKNSPSIIFID 55 (69)
Q Consensus 41 f~~a~~~~p~iifiD 55 (69)
++..+...|.++++|
T Consensus 45 ~~~l~~~~~dlii~d 59 (147)
T 2zay_A 45 VPVAVKTHPHLIITE 59 (147)
T ss_dssp HHHHHHHCCSEEEEE
T ss_pred HHHHHcCCCCEEEEc
Confidence 344445679999998
No 389
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=26.44 E-value=71 Score=20.20 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=12.1
Q ss_pred HHHhcCCeEEEEccccc
Q psy3868 43 EADKNSPSIIFIDELDA 59 (69)
Q Consensus 43 ~a~~~~p~iifiDEid~ 59 (69)
.+-...|.++++||--+
T Consensus 267 ~~l~~~p~~lllDEp~~ 283 (339)
T 3qkt_A 267 LYLAGEISLLILDEPTP 283 (339)
T ss_dssp HHTTTTTCEEEEECCCT
T ss_pred HHhcCCCCEEEEECCCC
Confidence 33346799999999643
No 390
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=26.39 E-value=66 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc-cc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA-IA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~-i~ 61 (69)
+...++++-+.++++ ..+|++||+.. ++
T Consensus 222 ~~~~l~~l~~l~~~~-~~~li~DEv~~~~g 250 (433)
T 1zod_A 222 PDGYMAALKRKCEAR-GMLLILDEAQTGVG 250 (433)
T ss_dssp CTTHHHHHHHHHHHH-TCEEEEECTTTTTT
T ss_pred CHHHHHHHHHHHHHh-CCEEEEeccccCCC
Confidence 344577777777665 58899999998 53
No 391
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=26.38 E-value=67 Score=20.62 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=13.2
Q ss_pred cCCeEEEEccccccc
Q psy3868 47 NSPSIIFIDELDAIA 61 (69)
Q Consensus 47 ~~p~iifiDEid~i~ 61 (69)
..|.+|++||+-++.
T Consensus 230 ~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHF 244 (349)
T ss_dssp SCEEEEEEETSSTTH
T ss_pred CCCCEEEEeCchHhh
Confidence 589999999998875
No 392
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=26.37 E-value=53 Score=18.08 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=13.3
Q ss_pred HHHHHHHhCCcEEEEchh
Q psy3868 6 TTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~~ 23 (69)
++.++.+.+.+++.+++-
T Consensus 134 ~~~~~~~~~~~~~~~Sa~ 151 (188)
T 2wjg_A 134 VDKLEKILGVKVVPLSAA 151 (188)
T ss_dssp HHHHHHHHTSCEEECBGG
T ss_pred HHHHHHHhCCCeEEEEec
Confidence 456777888888888753
No 393
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=26.37 E-value=1.3e+02 Score=19.33 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=34.1
Q ss_pred HHHHHhCC---cEEEEch-hhhhhcc-cChHH----HHHHHHHHHHHh--cCCeEEEEcccccccc
Q psy3868 8 LCRDSLGA---FFFLING-PEIMSKL-AGESE----SNLRKAFEEADK--NSPSIIFIDELDAIAP 62 (69)
Q Consensus 8 aia~~~~~---~~~~v~~-~~l~~~~-~ges~----~~l~~if~~a~~--~~p~iifiDEid~i~~ 62 (69)
..++++|+ .|..+++ ++++.+- .+... +.+.+.|..+.. ..+.+|+||..|-+..
T Consensus 98 ~~~~Klgidl~~f~fvD~~tdl~~~~~~~kp~~~~l~~v~~~f~~~i~~~~~~~vlIldqpdlLLa 163 (280)
T 4a8j_C 98 NSLNKLKIPSNNYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLS 163 (280)
T ss_dssp HHHHHTTCCGGGEEEEESSTTHHHHHTTTCCHHHHHHHHHHHHHHHHHTSTTSEEEEEECGGGHHH
T ss_pred HHHHHhCCChhheeEEEecchhhhhcccCCcchhhhHHHHHHHhhhhhccCCCeEEEEcChHHHHH
Confidence 34466776 6666766 3444433 34433 335667776544 3678999999998754
No 394
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=26.37 E-value=70 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
...++++-+.++++ ...|++||+...+.
T Consensus 179 ~~~l~~l~~~~~~~-~~~li~De~~~~~~ 206 (389)
T 1gd9_A 179 KKDLEEIADFVVEH-DLIVISDEVYEHFI 206 (389)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECTTTTCB
T ss_pred HHHHHHHHHHHHHc-CCEEEEehhhhhcc
Confidence 45788888888765 67888999998764
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=26.35 E-value=31 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+..|-...|.++++||-
T Consensus 137 lAral~~~p~lllLDEP 153 (240)
T 2onk_A 137 LARALVIQPRLLLLDEP 153 (240)
T ss_dssp HHHHHTTCCSSBEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33344578999999994
No 396
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=26.34 E-value=64 Score=18.25 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAPK 63 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~~ 63 (69)
-..+.++.+.++...-.+|++-++|.|++.
T Consensus 52 Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~ 81 (154)
T 3lhk_A 52 RKNYKKLLKMVMNRKVEKVIIAYPDRLTRF 81 (154)
T ss_dssp CHHHHHHHHHHHTTCEEEEEESSHHHHCSS
T ss_pred CHHHHHHHHHHHcCCCCEEEEEeCCccccc
Confidence 456888888887776688999999999865
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=26.34 E-value=90 Score=17.36 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=9.8
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 150 ~~~~~~~~~~~~~e~Sa 166 (187)
T 3c5c_A 150 GVALAGRFGCLFFEVSA 166 (187)
T ss_dssp HHHHHHHHTCEEEECCS
T ss_pred HHHHHHHcCCcEEEEee
Confidence 44555666666666554
No 398
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=26.34 E-value=20 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.9
Q ss_pred CeEEEEccccccc
Q psy3868 49 PSIIFIDELDAIA 61 (69)
Q Consensus 49 p~iifiDEid~i~ 61 (69)
-.+|++||+|.+.
T Consensus 184 ~~~vViDEah~~~ 196 (414)
T 3eiq_A 184 IKMFVLDEADEML 196 (414)
T ss_dssp CCEEEECSHHHHH
T ss_pred CcEEEEECHHHhh
Confidence 4789999999874
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.32 E-value=38 Score=19.54 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++.+++.+++..
T Consensus 14 sT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 14 GTQGERIVEKYGIPHIST 31 (216)
T ss_dssp HHHHHHHHHHSSCCEEEH
T ss_pred HHHHHHHHHHhCCcEEeH
Confidence 678999999998877544
No 400
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=26.31 E-value=50 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+.+|-...|.+|++||=
T Consensus 149 lArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 149 LARALAPDPELILLDEP 165 (359)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33344578999999994
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=26.28 E-value=54 Score=17.96 Aligned_cols=17 Identities=0% Similarity=-0.101 Sum_probs=10.4
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 146 ~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 146 GKEMATKYNIPYIETSA 162 (183)
T ss_dssp HHHHHHHHTCCEEEEBC
T ss_pred HHHHHHHhCCeEEEecc
Confidence 45566666666666655
No 402
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=26.26 E-value=59 Score=20.55 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++.+.++++ ..+|++||+..-+
T Consensus 201 ~~~~l~~i~~~~~~~-~~~li~De~y~~~ 228 (409)
T 4eu1_A 201 THDDWRQVCDVIKRR-NHIPFVDMAYQGF 228 (409)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEESCTTT
T ss_pred CHHHHHHHHHHHHhC-CcEEEEecccccc
Confidence 456788888888765 6889999996643
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=26.25 E-value=42 Score=19.45 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 14 sT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 14 GTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp HHHHHHHHHHHCCCEEEH
T ss_pred HHHHHHHHHHhCCeEEeH
Confidence 689999999999877654
No 404
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.23 E-value=1.4e+02 Score=20.17 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid 58 (69)
....+++.++.++.....+++||..-
T Consensus 167 p~~i~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 167 AIKLAKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 45556777888877778999999764
No 405
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=26.14 E-value=93 Score=19.13 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++-+.++++ ...+++||+...+.
T Consensus 168 ~~~~l~~l~~~~~~~-~~~li~De~~~~~~ 196 (377)
T 3fdb_A 168 APEWLNELCDLAHRY-DARVLVDEIHAPLV 196 (377)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTGGGB
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEcccchhh
Confidence 345688888888765 68888999988754
No 406
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=26.11 E-value=64 Score=20.93 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPE 24 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~ 24 (69)
+||...-.+|++.+.||+.+.++.
T Consensus 210 iGT~~iAl~Ak~~~vP~~V~a~~~ 233 (315)
T 3ecs_A 210 IGTNQMAVCAKAQNKPFYVVAESF 233 (315)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGG
T ss_pred hhhHHHHHHHHHhCCCEEEEeccc
Confidence 478888889999999999987763
No 407
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=26.10 E-value=41 Score=19.40 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.++..+|.+++..
T Consensus 17 st~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 17 STIAKRVASELSMIYVDT 34 (219)
T ss_dssp HHHHHHHHHHTTCEEEEH
T ss_pred HHHHHHHHHhcCCceecC
Confidence 789999999999887654
No 408
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=26.09 E-value=44 Score=20.34 Aligned_cols=23 Identities=9% Similarity=-0.162 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhCCcEEEEchhh
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPE 24 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~ 24 (69)
+...||.+|-.++.|++-|+.-+
T Consensus 85 G~~~Ak~La~~~~iPl~gVs~l~ 107 (218)
T 2a6a_A 85 GIATVVGLVSPYDIPVAPLNSFE 107 (218)
T ss_dssp HHHHHHHHHGGGTCCEEEECHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCcHH
Confidence 45689999999999999887543
No 409
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.06 E-value=52 Score=17.33 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=11.4
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 41 al~~~~~~~~dlvllD 56 (141)
T 3cu5_A 41 AIQIALKHPPNVLLTD 56 (141)
T ss_dssp HHHHHTTSCCSEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 4445556779999987
No 410
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=25.96 E-value=70 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
+...++++.+.+++....+|++||++.-
T Consensus 262 ~~~~l~~l~~la~~~~~~~li~De~y~~ 289 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNPKLMIISDEVYGA 289 (533)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEECTTGG
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccc
Confidence 4567888888887545789999999764
No 411
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.93 E-value=31 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.9
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-.+|++||+|.+..
T Consensus 139 ~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 139 VKILVADEIHLIGS 152 (720)
T ss_dssp EEEEEEETGGGGGC
T ss_pred CCEEEEECCcccCC
Confidence 36899999999875
No 412
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=25.92 E-value=82 Score=16.73 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCcEEEEchhh--hhhcccChHHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 5 LTTLCRDSLGAFFFLINGPE--IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~~--l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
.++.+|.++|+.=..-|.++ ..--.-| .+..|.+..+..+...|..--||+++.
T Consensus 29 ~v~~~A~~lgL~G~V~N~~dG~Vei~~eG-~~~~l~~f~~~l~~~gP~~a~V~~v~~ 84 (102)
T 1urr_A 29 HTSHEAKRLGVRGWCMNTRDGTVKGQLEA-PMMNLMEMKHWLENNRIPNAKVSKAEF 84 (102)
T ss_dssp HHHHHHHHHTCEEEEEECTTSCEEEEEEE-CHHHHHHHHHHHHHCCSTTCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEECCCCCEEEEEEc-CHHHHHHHHHHHHhcCCCccEEEEEEE
Confidence 46778888887544444332 2112223 456688888888766666556666653
No 413
>1xkp_C Chaperone protein YSCB; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=25.88 E-value=1e+02 Score=17.94 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHh---cCCeEEEEcccccc
Q psy3868 33 SESNLRKAFEEADK---NSPSIIFIDELDAI 60 (69)
Q Consensus 33 s~~~l~~if~~a~~---~~p~iifiDEid~i 60 (69)
.+..++.+.+.+-+ ..|+.|.+||-..+
T Consensus 61 ~~~lLK~lmQ~~l~w~R~~p~aLtld~~~qL 91 (143)
T 1xkp_C 61 NVTLLRSLMQQALAWAKRYPQTLVLDDCGQL 91 (143)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECTTSCE
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEcCcccc
Confidence 56778888877654 68999999997665
No 414
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=25.86 E-value=62 Score=20.20 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++-+.++++ ...+++||+...+
T Consensus 197 ~~~~l~~i~~~~~~~-~~~li~Dea~~~~ 224 (407)
T 3nra_A 197 SAEEIGQIAALAARY-GATVIADQLYSRL 224 (407)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTTTS
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 455688888888765 6888899999864
No 415
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=25.85 E-value=85 Score=19.71 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=13.6
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy3868 40 AFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 40 if~~a~~~~p~iifiDEid 58 (69)
.+..|-...|.++++||--
T Consensus 169 ~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHCCCCEEEEECCc
Confidence 3444445789999999953
No 416
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.76 E-value=52 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.+++.++.+++.
T Consensus 14 sT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 14 STISAEISKKLGYEIFK 30 (205)
T ss_dssp HHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHhcCCcEEc
Confidence 78999999999987764
No 417
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=25.69 E-value=33 Score=22.42 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.6
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+|++||+|.+..
T Consensus 192 ~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 192 RFMLLIFDEVHHLPA 206 (472)
T ss_dssp TCSEEEEETGGGTTS
T ss_pred CCCEEEEECCcCCCC
Confidence 468999999999864
No 418
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.68 E-value=58 Score=17.29 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=12.1
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy3868 40 AFEEADKNSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~~p~iifiDE 56 (69)
.++..+...|.++++|-
T Consensus 43 a~~~l~~~~~dlvi~d~ 59 (154)
T 2rjn_A 43 ALEALKGTSVQLVISDM 59 (154)
T ss_dssp HHHHHTTSCCSEEEEES
T ss_pred HHHHHhcCCCCEEEEec
Confidence 44555567799999983
No 419
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=25.63 E-value=53 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+.+|-...|.+|++||-
T Consensus 156 lArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 156 LARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33344578999999993
No 420
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=25.54 E-value=63 Score=20.70 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
++++-+.++++ ..++++||+...+
T Consensus 213 l~~l~~l~~~~-g~~li~Dea~~~~ 236 (427)
T 2w8t_A 213 LKEMVAVAKKH-GAMVLVDEAHSMG 236 (427)
T ss_dssp HHHHHHHHHHT-TCEEEEECTTTTT
T ss_pred HHHHHHHHHHc-CCEEEEECCcccc
Confidence 67777777665 6889999999874
No 421
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=25.53 E-value=1.6e+02 Score=21.18 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHhCCcEEE-EchhhhhhcccChHHHHHHHHHHHHHh-cCCeEEEEc
Q psy3868 9 CRDSLGAFFFL-INGPEIMSKLAGESESNLRKAFEEADK-NSPSIIFID 55 (69)
Q Consensus 9 ia~~~~~~~~~-v~~~~l~~~~~ges~~~l~~if~~a~~-~~p~iifiD 55 (69)
++...|++.+. +++.+ ...|.+.++.|++ .+|++|.+.
T Consensus 245 ~~~a~G~~~~~~vdG~d---------~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 245 RFEAYGWNVIPNVNGHD---------VDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp HHHHTTCEEEEEEETTC---------HHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHcCCcEEEEeCCCC---------HHHHHHHHHHHHhCCCCEEEEEc
Confidence 45556777766 55543 4567788888865 578888654
No 422
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=25.53 E-value=64 Score=18.36 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid 58 (69)
...+.+..++..|.||.+-|++
T Consensus 24 ~~~~~~~i~~~~~DIv~LQE~~ 45 (238)
T 1vyb_A 24 RHRLASWIKSQDPSVCCIQETH 45 (238)
T ss_dssp HHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeccc
Confidence 3567777777899999999985
No 423
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.48 E-value=44 Score=20.70 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhcc-cC---hHHHHHHHHHHHHHh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSKL-AG---ESESNLRKAFEEADK 46 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~~-~g---es~~~l~~if~~a~~ 46 (69)
..+++.+|+.++.+.+.+..+.+++.- .- ..+..++++++.+++
T Consensus 108 n~i~~~lA~~~~~~~~~l~aP~~~~~~~~~~~l~~~~~i~~vl~~~~~ 155 (266)
T 3efb_A 108 NTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDN 155 (266)
T ss_dssp HHHHHHHHHHTTCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCeEEEEeCCeecCCHHHHHHHHhChHHHHHHHHHhc
Confidence 467899999999988888887775541 00 134667888888765
No 424
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.40 E-value=61 Score=16.91 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=11.0
Q ss_pred HHHHHHh-cCCeEEEEc
Q psy3868 40 AFEEADK-NSPSIIFID 55 (69)
Q Consensus 40 if~~a~~-~~p~iifiD 55 (69)
.++...+ ..|.++++|
T Consensus 41 a~~~l~~~~~~dlvi~D 57 (140)
T 3h5i_A 41 AVEKVSGGWYPDLILMD 57 (140)
T ss_dssp HHHHHHTTCCCSEEEEE
T ss_pred HHHHHhcCCCCCEEEEe
Confidence 3444444 689999998
No 425
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=25.40 E-value=67 Score=20.00 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++.+.++++ ...+++||+..-+.
T Consensus 191 ~~~~l~~l~~~~~~~-~~~li~De~~~~~~ 219 (397)
T 3fsl_A 191 TNDQWDAVIEILKAR-ELIPFLDIAYQGFG 219 (397)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEESCTTSS
T ss_pred CHHHHHHHHHHHHhC-CEEEEEecCchhhc
Confidence 345688888888765 68889999976543
No 426
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=25.37 E-value=63 Score=17.37 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=9.7
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++..+.+.+.+++.+++
T Consensus 134 ~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 134 GRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHHHHHHHTSEEEECBT
T ss_pred HHHHHHHcCCeEEEEec
Confidence 34455556666666654
No 427
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.32 E-value=53 Score=17.89 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=11.2
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++..+...|.++++|
T Consensus 63 al~~l~~~~~dlvilD 78 (164)
T 3t8y_A 63 AVEKAIELKPDVITMD 78 (164)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHhccCCCCEEEEe
Confidence 4444555679999998
No 428
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=25.31 E-value=1.2e+02 Score=18.35 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
...|.+.|.|++.++..++-+ .+..=.++.+..++.+|.++++=-.-.+
T Consensus 50 l~~A~~~gIp~~~~~~~~~~~-----r~~~d~~~~~~l~~~~~Dliv~agy~~i 98 (209)
T 4ds3_A 50 LAKAEAAGIATQVFKRKDFAS-----KEAHEDAILAALDVLKPDIICLAGYMRL 98 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSS-----HHHHHHHHHHHHHHHCCSEEEESSCCSC
T ss_pred HHHHHHcCCCEEEeCccccCC-----HHHHHHHHHHHHHhcCCCEEEEeccccC
Confidence 357888999999887765421 1111134555666778888876444333
No 429
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=25.29 E-value=75 Score=18.53 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCeEEEEccccc
Q psy3868 36 NLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 36 ~l~~if~~a~~~~p~iifiDEid~ 59 (69)
....+.+..++..|.||.+-|.+.
T Consensus 33 ~~~~l~~~i~~~~~DIv~lQE~~~ 56 (245)
T 1wdu_A 33 ATAELAIEAATRKAAIALIQEPYV 56 (245)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCC
T ss_pred HHHHHHHHHhhcCCCEEEEEcccc
Confidence 455788888889999999999875
No 430
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=25.21 E-value=29 Score=20.15 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHHHHHH--HhCCcEEEEchhhhhhcccC
Q psy3868 4 RLTTLCRD--SLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 4 ~la~aia~--~~~~~~~~v~~~~l~~~~~g 31 (69)
.+..++++ +.++|++.++...-++.|.|
T Consensus 73 k~i~~lC~~~e~~IP~i~V~s~keLG~a~G 102 (143)
T 3u5c_M 73 KLVEGLANDPENKVPLIKVADAKQLGEWAG 102 (143)
T ss_dssp HHHHHHHHCSSSCCCCCCCSCHHHHHHHSS
T ss_pred HHHHHHHhhhhhCCCEEEECCHHHHhHHhC
Confidence 46678899 89999999987777777776
No 431
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=25.21 E-value=68 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++-+.++++ ..++++||+.+
T Consensus 250 ~~~~l~~l~~l~~~~-g~lli~DEv~~ 275 (449)
T 2cjg_A 250 RPEFFAAMRELCDEF-DALLIFDEVQT 275 (449)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTT
T ss_pred CHHHHHHHHHHHHHC-CcEEEEecccc
Confidence 456688888888765 58899999998
No 432
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.18 E-value=32 Score=22.63 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3868 49 PSIIFIDELDAIAP 62 (69)
Q Consensus 49 p~iifiDEid~i~~ 62 (69)
-..|++||+|.+..
T Consensus 131 ~~~vViDEah~~~~ 144 (556)
T 4a2p_A 131 FTLMIFDECHNTTG 144 (556)
T ss_dssp CSEEEEETGGGCST
T ss_pred CCEEEEECCcccCC
Confidence 46899999999864
No 433
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=25.18 E-value=1.2e+02 Score=18.49 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=22.0
Q ss_pred HHHHHHhCCcEEEEchhhhhhcccChHHHHHHHHHHHHHh
Q psy3868 7 TLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 46 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~~~l~~~~~ges~~~l~~if~~a~~ 46 (69)
+.++..+|+|++.+++. +...+.++|+...+
T Consensus 135 ~~l~~~lg~~~i~~SA~---------~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 135 DALSARLGCPVIPLVST---------RGRGIEALKLAIDR 165 (274)
T ss_dssp HHHHHHHTSCEEECCCG---------GGHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEcC---------CCCCHHHHHHHHHH
Confidence 56777888898888764 34567777777655
No 434
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.17 E-value=58 Score=16.50 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.2
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++......|.++++|
T Consensus 41 a~~~~~~~~~dlvi~D 56 (128)
T 1jbe_A 41 ALNKLQAGGYGFVISD 56 (128)
T ss_dssp HHHHHTTCCCCEEEEE
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3444556679999987
No 435
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=25.14 E-value=39 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 36 NLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 36 ~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
.+.+.++......-..|++||+|.+..
T Consensus 184 rL~~~l~~l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEESCHHHHTT
T ss_pred HHHHHHHhhcccCcCEEEEeCCCcccc
Confidence 333333444445678999999987654
No 436
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=24.91 E-value=81 Score=20.07 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
...++++-+.++++ ..+|++||+..-+.
T Consensus 213 ~~~l~~l~~l~~~~-~~~li~De~~~~~~ 240 (421)
T 3l8a_A 213 NDDLIKIAELCKKH-GVILVSDEIHQDLA 240 (421)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTTTCB
T ss_pred HHHHHHHHHHHHHc-CCEEEEEccccccc
Confidence 35588888888765 68888999977543
No 437
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=24.83 E-value=77 Score=19.91 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHhCCcEEEEchhhhhh
Q psy3868 1 MSYRLTTLCRDSLGAFFFLINGPEIMS 27 (69)
Q Consensus 1 ~~T~la~aia~~~~~~~~~v~~~~l~~ 27 (69)
++|.....+|++.+.||+.+.++.=++
T Consensus 198 iGt~~iA~~A~~~~vp~~V~a~~~K~~ 224 (276)
T 1vb5_A 198 AGTYLLALACHENAIPFYVAAETYKFH 224 (276)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCGGGBC
T ss_pred hhHHHHHHHHHHcCCCEEEeccccccC
Confidence 478888899999999999988765544
No 438
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.81 E-value=66 Score=16.31 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=11.4
Q ss_pred HHHHHHhc-CCeEEEEcc
Q psy3868 40 AFEEADKN-SPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~~-~p~iifiDE 56 (69)
.++..+.. .|.++++|-
T Consensus 41 a~~~l~~~~~~dlvi~d~ 58 (132)
T 2rdm_A 41 AIEMLKSGAAIDGVVTDI 58 (132)
T ss_dssp HHHHHHTTCCCCEEEEES
T ss_pred HHHHHHcCCCCCEEEEee
Confidence 34445555 799999873
No 439
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=24.80 E-value=40 Score=22.15 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
.+.++....-..-.+|+|||+|.+.
T Consensus 82 ~~~l~~~~~~~~l~~vViDEaH~~~ 106 (431)
T 2v6i_A 82 TMKLLQGVRVPNYNLYIMDEAHFLD 106 (431)
T ss_dssp HHHHHHTCCCCCCSEEEEESTTCCS
T ss_pred HHHHhcCccccCCCEEEEeCCccCC
Confidence 3444442212345899999999973
No 440
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=24.79 E-value=60 Score=19.75 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
++++-+.++++ ...|++||+..++.
T Consensus 150 l~~i~~l~~~~-~~~li~Dea~~~~~ 174 (366)
T 1m32_A 150 IDEVGALAHRY-GKTYIVDAMSSFGG 174 (366)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTTT
T ss_pred HHHHHHHHHHc-CCEEEEECCccccC
Confidence 56666666664 57888999988653
No 441
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=24.72 E-value=58 Score=16.93 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++......|.++++|
T Consensus 36 a~~~~~~~~~dlvl~D 51 (139)
T 2jk1_A 36 AIAILEEEWVQVIICD 51 (139)
T ss_dssp HHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 3444556679999987
No 442
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=24.72 E-value=1.3e+02 Score=18.53 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCCcEEEEchhhhhhc----ccChHHHHHHHHHHHHHh
Q psy3868 3 YRLTTLCRDSLGAFFFLINGPEIMSK----LAGESESNLRKAFEEADK 46 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v~~~~l~~~----~~ges~~~l~~if~~a~~ 46 (69)
+.+++.+|+.++.+...+..+..+.. -.-..++.++++++.+..
T Consensus 105 ~~~~~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (264)
T 2r5f_A 105 TLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFDS 152 (264)
T ss_dssp HHHHHHHHHHHTSCEECCCCC----------CCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCeeEEeeCCcccCCHHHHHHHHcChHHHHHHHHHhc
Confidence 46788899999988777766665422 223466778888887643
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=24.67 E-value=60 Score=19.15 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.++..+|.+++.
T Consensus 30 st~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 30 STVAKIIAKDFGFTYLD 46 (236)
T ss_dssp HHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCceec
Confidence 67899999999987765
No 444
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=24.62 E-value=50 Score=19.46 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=9.0
Q ss_pred HHHHHHhCCcEEEEch
Q psy3868 7 TLCRDSLGAFFFLING 22 (69)
Q Consensus 7 ~aia~~~~~~~~~v~~ 22 (69)
+..|...+++++++++
T Consensus 169 ~~~a~~~~~~~~e~SA 184 (211)
T 2g3y_A 169 RACAVVFDCKFIETSA 184 (211)
T ss_dssp HHHHHHHTCEEEECBT
T ss_pred HHHHHHcCCEEEEEeC
Confidence 3445555666666554
No 445
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.62 E-value=53 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=10.8
Q ss_pred cCCeEEEEcccccc
Q psy3868 47 NSPSIIFIDELDAI 60 (69)
Q Consensus 47 ~~p~iifiDEid~i 60 (69)
..|.++++||..+=
T Consensus 240 ~~~~~lllDEp~~~ 253 (322)
T 1e69_A 240 KPSPFYVLDEVDSP 253 (322)
T ss_dssp SCCSEEEEESCCSS
T ss_pred CCCCEEEEeCCCCC
Confidence 45789999997653
No 446
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.61 E-value=31 Score=20.11 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.+|..++.+++.
T Consensus 19 sT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 19 GTQCELIKTKYQLAHIS 35 (222)
T ss_dssp HHHHHHHHHHHCCEECC
T ss_pred HHHHHHHHHHhCCceec
Confidence 67999999999986654
No 447
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=24.60 E-value=64 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=12.5
Q ss_pred cCCeEEEEcccccccc
Q psy3868 47 NSPSIIFIDELDAIAP 62 (69)
Q Consensus 47 ~~p~iifiDEid~i~~ 62 (69)
..-.+|++||+|.+..
T Consensus 174 ~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLE 189 (579)
T ss_dssp TTCCEEEEETHHHHTS
T ss_pred ccCCEEEEEChHHhhc
Confidence 3467889999998863
No 448
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=24.57 E-value=54 Score=17.51 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.4
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 130 ~~~~~~~~~~~~~~~Sa 146 (170)
T 1g16_A 130 GEALAKELGIPFIESSA 146 (170)
T ss_dssp HHHHHHHHTCCEEECBT
T ss_pred HHHHHHHcCCeEEEEEC
Confidence 44556666666666655
No 449
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=24.55 E-value=23 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-..|++||+|.+..
T Consensus 203 ~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 203 DTRFVVLDEADRMLD 217 (434)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCeEEEccHhhhhc
Confidence 347899999998754
No 450
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=24.52 E-value=68 Score=19.45 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcC-CeEEEEccccccc
Q psy3868 37 LRKAFEEADKNS-PSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~-p~iifiDEid~i~ 61 (69)
++++-+.++++. ...+++||++.++
T Consensus 140 l~~i~~l~~~~~~~~~li~D~a~~~~ 165 (352)
T 1iug_A 140 LPALARAFKEKNPEGLVGADMVTSLL 165 (352)
T ss_dssp HHHHHHHHHHHCTTCEEEEECTTTBT
T ss_pred HHHHHHHHHhhCCCCEEEEECCcccc
Confidence 667777777653 5788899998764
No 451
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=24.51 E-value=67 Score=20.14 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++.+.++++ ..+++.||+..-+
T Consensus 193 ~~~~l~~i~~~~~~~-~~~li~Deay~~~ 220 (401)
T 7aat_A 193 RQEQWKELASVVKKR-NLLAYFDMAYQGF 220 (401)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEESCTTT
T ss_pred CHHHHHHHHHHHHhC-CcEEEEccccccc
Confidence 567889999988775 5788999996543
No 452
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=24.40 E-value=81 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
...++++-+.++++ ...+++||+...+.
T Consensus 179 ~~~l~~i~~~~~~~-~~~li~De~~~~~~ 206 (391)
T 3dzz_A 179 EEEVKRIAELCAKH-QVLLISDEIHGDLV 206 (391)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECTTTTCB
T ss_pred HHHHHHHHHHHHHC-CCEEEEeccccccc
Confidence 35688888888765 67888999987543
No 453
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=24.37 E-value=33 Score=19.08 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhC-----CcEEE
Q psy3868 3 YRLTTLCRDSLG-----AFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~-----~~~~~ 19 (69)
|++++.++..++ .+++.
T Consensus 17 sT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 17 TTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHHHhcCcceEEEe
Confidence 689999999887 66654
No 454
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=24.34 E-value=57 Score=17.57 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=6.0
Q ss_pred HHHHHhCCcEEEEc
Q psy3868 8 LCRDSLGAFFFLIN 21 (69)
Q Consensus 8 aia~~~~~~~~~v~ 21 (69)
.++.+.+.+++.++
T Consensus 145 ~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 145 QFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHTTCEEEECC
T ss_pred HHHHHcCCEEEEEe
Confidence 33444444444443
No 455
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=24.33 E-value=66 Score=20.54 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAI 60 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i 60 (69)
...++++.+.++++ ...|++||+...
T Consensus 210 ~~~l~~l~~~~~~~-~~~li~Dea~~~ 235 (435)
T 3piu_A 210 RNELYLLLSFVEDK-GIHLISDEIYSG 235 (435)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTGG
T ss_pred HHHHHHHHHHHHHc-CCEEEEeccccc
Confidence 45688888888765 578889999876
No 456
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=24.31 E-value=35 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.3
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
...+++|||.|.+-.
T Consensus 175 ~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 175 EDYLIVIDEAHNLLE 189 (540)
T ss_dssp GGEEEEETTGGGGGG
T ss_pred CCCEEEEEccccHHH
Confidence 458999999999943
No 457
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=24.31 E-value=68 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++-+.++++ ...+++||+...+
T Consensus 192 ~~~~l~~i~~~~~~~-~~~li~De~~~~~ 219 (422)
T 3fvs_A 192 SREELELVASLCQQH-DVVCITDEVYQWM 219 (422)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTTTC
T ss_pred CHHHHHHHHHHHHHc-CcEEEEEccchhh
Confidence 455788898888775 6888899998764
No 458
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=24.25 E-value=73 Score=19.87 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhc-----CCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKN-----SPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~-----~p~iifiDEid~i~~ 62 (69)
+...++++-+.+++. ....|++||+...+.
T Consensus 190 ~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~ 224 (398)
T 3ele_A 190 SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCB
T ss_pred CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccc
Confidence 345578787777651 468899999988643
No 459
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=24.15 E-value=54 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=12.2
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+.+|--..|.||++||-
T Consensus 201 iARAL~~~p~iLlLDEP 217 (306)
T 3nh6_A 201 IARTILKAPGIILLDEA 217 (306)
T ss_dssp HHHHHHHCCSEEEEECC
T ss_pred HHHHHHhCCCEEEEECC
Confidence 33343468999999995
No 460
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.12 E-value=60 Score=19.57 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEcccc
Q psy3868 34 ESNLRKAFEEADK----NSPSIIFIDELD 58 (69)
Q Consensus 34 ~~~l~~if~~a~~----~~p~iifiDEid 58 (69)
+...+..|+.+++ ....+|++||+-
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 4556777777765 347899999984
No 461
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.11 E-value=88 Score=19.25 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++.+.++++ ...+++||+...+.
T Consensus 174 ~~~~l~~l~~~~~~~-~~~li~De~~~~~~ 202 (383)
T 3kax_A 174 KKEELTKLGSLCTKY-NVIVVADEIHSDII 202 (383)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTTTCB
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEccccccc
Confidence 355688888888665 67888999987654
No 462
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=24.08 E-value=73 Score=17.73 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCcEEEEchhhhhhcccC
Q psy3868 4 RLTTLCRDSLGAFFFLINGPEIMSKLAG 31 (69)
Q Consensus 4 ~la~aia~~~~~~~~~v~~~~l~~~~~g 31 (69)
....+++.+.++|++.+....-++.+.|
T Consensus 57 ~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 57 KLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 3567889999999998876555565555
No 463
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.02 E-value=74 Score=17.61 Aligned_cols=19 Identities=21% Similarity=0.154 Sum_probs=15.6
Q ss_pred hHHHHHHHHHh---CCcEEEEc
Q psy3868 3 YRLTTLCRDSL---GAFFFLIN 21 (69)
Q Consensus 3 T~la~aia~~~---~~~~~~v~ 21 (69)
|++++.++..+ |.+++..+
T Consensus 14 sT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 14 TTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEe
Confidence 67899999988 88887764
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=23.94 E-value=89 Score=17.32 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=10.3
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 149 ~~~~~~~~~~~~~~~Sa 165 (191)
T 2a5j_A 149 GEAFAREHGLIFMETSA 165 (191)
T ss_dssp HHHHHHHHTCEEEEECT
T ss_pred HHHHHHHcCCEEEEEeC
Confidence 44555666666666655
No 465
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=23.81 E-value=55 Score=18.17 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=9.0
Q ss_pred HHHHHHHhCCcEEEEch
Q psy3868 6 TTLCRDSLGAFFFLING 22 (69)
Q Consensus 6 a~aia~~~~~~~~~v~~ 22 (69)
++.++.+.+.+++.+++
T Consensus 150 ~~~~~~~~~~~~~~~Sa 166 (189)
T 2gf9_A 150 GRRLADDLGFEFFEASA 166 (189)
T ss_dssp HHHHHHHHTCEEEECBT
T ss_pred HHHHHHHcCCeEEEEEC
Confidence 34455555555555544
No 466
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.80 E-value=63 Score=16.06 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=9.2
Q ss_pred HHHhcCCeEEEEc
Q psy3868 43 EADKNSPSIIFID 55 (69)
Q Consensus 43 ~a~~~~p~iifiD 55 (69)
......|.++++|
T Consensus 40 ~~~~~~~dlvi~D 52 (121)
T 1zh2_A 40 EAATRKPDLIILD 52 (121)
T ss_dssp HHHHHCCSEEEEE
T ss_pred HHhcCCCCEEEEe
Confidence 3345578999987
No 467
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=23.78 E-value=72 Score=17.16 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCcEEEEchh
Q psy3868 5 LTTLCRDSLGAFFFLINGP 23 (69)
Q Consensus 5 la~aia~~~~~~~~~v~~~ 23 (69)
.++..+...+.+++.+++.
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 135 DAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp HHHHHHHHHTCCEEECBTT
T ss_pred HHHHHHHHcCCeEEEEECC
Confidence 4556666777777776653
No 468
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=23.74 E-value=2e+02 Score=20.37 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=26.4
Q ss_pred HHHHhCCcEE-EEchhhhhhcccChHHHHHHHHHHHHHh--cCCeEEEEc
Q psy3868 9 CRDSLGAFFF-LINGPEIMSKLAGESESNLRKAFEEADK--NSPSIIFID 55 (69)
Q Consensus 9 ia~~~~~~~~-~v~~~~l~~~~~ges~~~l~~if~~a~~--~~p~iifiD 55 (69)
++...|++.+ .+++.+ ...|.+.++.|++ .+|.+|.+.
T Consensus 204 ~~~a~G~~~~~~vdG~d---------~~~l~~al~~a~~~~~~P~lI~~~ 244 (669)
T 2r8o_A 204 RFEAYGWHVIRDIDGHD---------AASIKRAVEEARAVTDKPSLLMCK 244 (669)
T ss_dssp HHHHTTCEEEEEEETTC---------HHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHCCCeEEeEECCCC---------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4556777777 676544 4577888888875 579887653
No 469
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=23.71 E-value=24 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3868 48 SPSIIFIDELDAIAP 62 (69)
Q Consensus 48 ~p~iifiDEid~i~~ 62 (69)
.-.+|++||+|.+..
T Consensus 226 ~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 226 FVDYKVLDEADRLLE 240 (563)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cceEEEEeCHHHHhc
Confidence 457889999998753
No 470
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.68 E-value=67 Score=17.70 Aligned_cols=17 Identities=18% Similarity=0.125 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.++..+|.+++.
T Consensus 22 STl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 22 SAVASEVAHQLHAAFLD 38 (175)
T ss_dssp HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhhCcEEEe
Confidence 67899999999877654
No 471
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=23.66 E-value=64 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.0
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy3868 40 AFEEADKNSPSIIFIDEL 57 (69)
Q Consensus 40 if~~a~~~~p~iifiDEi 57 (69)
.+.+|-...|.+|++||-
T Consensus 165 alARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEP 182 (390)
T ss_dssp HHHHHHHTTCCEEEEESH
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 344444578999999993
No 472
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=23.64 E-value=49 Score=22.39 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.6
Q ss_pred cCCeEEEEccccccc
Q psy3868 47 NSPSIIFIDELDAIA 61 (69)
Q Consensus 47 ~~p~iifiDEid~i~ 61 (69)
.....|+|||+|.+.
T Consensus 138 ~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 138 WNPVLLAVDEAHCIS 152 (523)
T ss_dssp SCEEEEEESSGGGGC
T ss_pred CCCCEEEEeCccccC
Confidence 566789999999985
No 473
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=23.59 E-value=87 Score=16.66 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=3.6
Q ss_pred EEchhhhh
Q psy3868 19 LINGPEIM 26 (69)
Q Consensus 19 ~v~~~~l~ 26 (69)
..+-.++.
T Consensus 117 v~nK~Dl~ 124 (170)
T 1z08_A 117 VGNKIDLE 124 (170)
T ss_dssp EEECGGGG
T ss_pred EEECcccc
Confidence 34444443
No 474
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=23.53 E-value=73 Score=16.89 Aligned_cols=6 Identities=17% Similarity=0.435 Sum_probs=3.0
Q ss_pred chhhhh
Q psy3868 21 NGPEIM 26 (69)
Q Consensus 21 ~~~~l~ 26 (69)
+-.++.
T Consensus 119 nK~Dl~ 124 (170)
T 1r2q_A 119 NKADLA 124 (170)
T ss_dssp ECGGGG
T ss_pred ECccCc
Confidence 555543
No 475
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.46 E-value=60 Score=18.10 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=11.9
Q ss_pred HHHHHHhcCCeEEEEc
Q psy3868 40 AFEEADKNSPSIIFID 55 (69)
Q Consensus 40 if~~a~~~~p~iifiD 55 (69)
.++......|.++++|
T Consensus 43 al~~~~~~~~dlvl~D 58 (184)
T 3rqi_A 43 ALKLAGAEKFEFITVX 58 (184)
T ss_dssp HHHHHTTSCCSEEEEC
T ss_pred HHHHHhhCCCCEEEEe
Confidence 4455566789999997
No 476
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=23.46 E-value=93 Score=17.33 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=11.9
Q ss_pred HHHHHHHHhC-CcEEEEch
Q psy3868 5 LTTLCRDSLG-AFFFLING 22 (69)
Q Consensus 5 la~aia~~~~-~~~~~v~~ 22 (69)
-++.++.+.+ .+++++++
T Consensus 143 ~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 143 RARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHHHHHTTTCEEEEEBT
T ss_pred HHHHHHHHcCCCeEEEecC
Confidence 3556667775 77777766
No 477
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=23.33 E-value=60 Score=20.95 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDE 56 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDE 56 (69)
+...++++|+.+.+..|.|.++|+
T Consensus 250 t~eei~~~~~~~y~~~~~v~v~~~ 273 (345)
T 2ozp_A 250 SERDVWQAYREAYAGEPFIRLVKQ 273 (345)
T ss_dssp CHHHHHHHHHHHHTTCTTEEECCC
T ss_pred CHHHHHHHHHHHhCCCCCEEEEeC
Confidence 678899999999999999999964
No 478
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=23.29 E-value=74 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 34 ESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 34 ~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
...++++-+.++++ ..++++||+...+
T Consensus 186 ~~~l~~l~~~~~~~-~~~li~De~~~~~ 212 (410)
T 3e2y_A 186 RQELQVIADLCVKH-DTLCISDEVYEWL 212 (410)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTTTC
T ss_pred HHHHHHHHHHHHHc-CcEEEEEhhhhhc
Confidence 46688888888765 5788899998754
No 479
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=23.27 E-value=56 Score=21.58 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.0
Q ss_pred HHhcCCeEEEEccc
Q psy3868 44 ADKNSPSIIFIDEL 57 (69)
Q Consensus 44 a~~~~p~iifiDEi 57 (69)
|-...|.+|++||-
T Consensus 177 AL~~~P~lLLlDEP 190 (366)
T 3tui_C 177 ALASNPKVLLCDQA 190 (366)
T ss_dssp HTTTCCSEEEEEST
T ss_pred HHhcCCCEEEEECC
Confidence 33468999999994
No 480
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.25 E-value=77 Score=16.69 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=11.8
Q ss_pred HHHHHHh-cCCeEEEEcc
Q psy3868 40 AFEEADK-NSPSIIFIDE 56 (69)
Q Consensus 40 if~~a~~-~~p~iifiDE 56 (69)
.++..+. ..|.++++|-
T Consensus 41 a~~~l~~~~~~dlvi~d~ 58 (154)
T 2qsj_A 41 ALAFLEADNTVDLILLDV 58 (154)
T ss_dssp HHHHHHTTCCCSEEEECC
T ss_pred HHHHHhccCCCCEEEEeC
Confidence 4444555 7899999973
No 481
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.25 E-value=44 Score=17.17 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=10.8
Q ss_pred HHHHHhcCCeEEEEcc
Q psy3868 41 FEEADKNSPSIIFIDE 56 (69)
Q Consensus 41 f~~a~~~~p~iifiDE 56 (69)
++..++..|.++++|-
T Consensus 39 ~~~~~~~~~dlii~d~ 54 (134)
T 3f6c_A 39 VQRVETLKPDIVIIDV 54 (134)
T ss_dssp HHHHHHHCCSEEEEET
T ss_pred HHHHHhcCCCEEEEec
Confidence 3344456799999873
No 482
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=23.22 E-value=77 Score=16.41 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=7.6
Q ss_pred cCCeEEEEc
Q psy3868 47 NSPSIIFID 55 (69)
Q Consensus 47 ~~p~iifiD 55 (69)
..|.++++|
T Consensus 51 ~~~dlvllD 59 (133)
T 2r25_B 51 ENYNMIFMD 59 (133)
T ss_dssp CCCSEEEEC
T ss_pred CCCCEEEEe
Confidence 578999988
No 483
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.18 E-value=67 Score=18.47 Aligned_cols=17 Identities=12% Similarity=-0.002 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhCCcEEE
Q psy3868 3 YRLTTLCRDSLGAFFFL 19 (69)
Q Consensus 3 T~la~aia~~~~~~~~~ 19 (69)
|++++.+++.+|.+++.
T Consensus 19 STl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 19 GTLCKAMAEALQWHLLD 35 (227)
T ss_dssp HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCCccc
Confidence 67899999999877654
No 484
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=23.06 E-value=48 Score=17.83 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCCcEEEE
Q psy3868 3 YRLTTLCRDSLGAFFFLI 20 (69)
Q Consensus 3 T~la~aia~~~~~~~~~v 20 (69)
|++++.+ ..+|.+++.+
T Consensus 15 sT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 15 SEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp HHHHHHH-HHTTCEEEEH
T ss_pred HHHHHHH-HHCCCcEEEH
Confidence 6789999 8889887654
No 485
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=23.03 E-value=77 Score=19.73 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIAP 62 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~~ 62 (69)
+...++++.+.++++ ...+++||+...+.
T Consensus 186 ~~~~l~~i~~~~~~~-~~~li~De~~~~~~ 214 (396)
T 3jtx_A 186 DLDGWKEVFDLQDKY-GFIIASDECYSEIY 214 (396)
T ss_dssp CHHHHHHHHHHHHHH-CCEEEEECTTTTCC
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEccccccc
Confidence 345688888888765 57888999987643
No 486
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=22.98 E-value=1.5e+02 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
+...++++.+.++++ ..+|+.||+-.
T Consensus 192 s~~~~~~l~~~~~~~-~~~vi~De~Y~ 217 (405)
T 3k7y_A 192 EEKYFDEIIEIVLHK-KHVIIFDIAYQ 217 (405)
T ss_dssp CHHHHHHHHHHHHHH-CCEEEEEESCT
T ss_pred CHHHHHHHHHHHHHC-CeEEEEecCcc
Confidence 577788898888765 57888999854
No 487
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=22.93 E-value=1.1e+02 Score=19.49 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=26.0
Q ss_pred CcEEEEchhhh-hhcccChHHHHHHHHHHHHHhcCCeEEEEccccc
Q psy3868 15 AFFFLINGPEI-MSKLAGESESNLRKAFEEADKNSPSIIFIDELDA 59 (69)
Q Consensus 15 ~~~~~v~~~~l-~~~~~ges~~~l~~if~~a~~~~p~iifiDEid~ 59 (69)
..++.+++.+= .....--+...++++-+.++++ ..++++||+..
T Consensus 191 ~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~ 235 (430)
T 3i4j_A 191 VAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMS 235 (430)
T ss_dssp EEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTT
T ss_pred EEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhh
Confidence 34566666441 1111112444577777777665 67888999977
No 488
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=22.91 E-value=58 Score=19.80 Aligned_cols=23 Identities=0% Similarity=-0.239 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhCCcEEEEchhh
Q psy3868 2 SYRLTTLCRDSLGAFFFLINGPE 24 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~~~ 24 (69)
+...||.+|-.++.|++-++.-+
T Consensus 75 g~~~AkgLa~~~~iPl~gVstL~ 97 (213)
T 3r6m_A 75 GIGIAQGLAFGAELPMIGVSTLA 97 (213)
T ss_dssp HHHHHHHHHHHTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEcCHH
Confidence 56789999999999999987644
No 489
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=22.80 E-value=88 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.093 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
+...++++-+.++++ ...|++||+...+
T Consensus 200 ~~~~l~~i~~~a~~~-~~~li~De~~~~~ 227 (437)
T 3g0t_A 200 TDEELRIIGELATKH-DVIVIEDLAYFGM 227 (437)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEECTTTTC
T ss_pred CHHHHHHHHHHHHHC-CcEEEEEcchhhc
Confidence 455688888888765 6888899998753
No 490
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=22.73 E-value=70 Score=19.32 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q psy3868 37 LRKAFEEADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 37 l~~if~~a~~~~p~iifiDEid~i~ 61 (69)
++++-+.++++ ...|++||+..++
T Consensus 143 ~~~i~~l~~~~-~~~li~D~a~~~~ 166 (353)
T 2yrr_A 143 AEAIGALAKEA-GALFFLDAVTTLG 166 (353)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTT
T ss_pred HHHHHHHHHHc-CCeEEEEcCcccc
Confidence 45566666554 5788899998764
No 491
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=22.72 E-value=55 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHhcCCeEEEEccccccc
Q psy3868 44 ADKNSPSIIFIDELDAIA 61 (69)
Q Consensus 44 a~~~~p~iifiDEid~i~ 61 (69)
++...+.++++||++.+-
T Consensus 269 lrG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 269 VRGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHTSCCSEEEEESGGGST
T ss_pred ccCCCCCEEEechhhhcC
Confidence 345668899999998764
No 492
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=22.71 E-value=80 Score=16.77 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=4.8
Q ss_pred HHHHhCCcEEEE
Q psy3868 9 CRDSLGAFFFLI 20 (69)
Q Consensus 9 ia~~~~~~~~~v 20 (69)
++...+.+++.+
T Consensus 137 ~~~~~~~~~~~~ 148 (170)
T 1z0j_A 137 YADSIHAIFVET 148 (170)
T ss_dssp HHHHTTCEEEEC
T ss_pred HHHHcCCEEEEE
Confidence 333334444443
No 493
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.68 E-value=37 Score=24.73 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhCCcEEEEch
Q psy3868 2 SYRLTTLCRDSLGAFFFLING 22 (69)
Q Consensus 2 ~T~la~aia~~~~~~~~~v~~ 22 (69)
||.+|+.+|..++.|++.|+-
T Consensus 466 st~~Ak~lA~~~~iPli~VqH 486 (772)
T 4g9i_A 466 TTKLAMEMANELDVELLQVQH 486 (772)
T ss_dssp HHHHHHHHHTTTTCCCCEECS
T ss_pred HHHHHHHHHHhcCCCeeeehH
Confidence 788999999999999888864
No 494
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.67 E-value=61 Score=17.39 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=10.3
Q ss_pred HHHHHHhc--CCeEEEEc
Q psy3868 40 AFEEADKN--SPSIIFID 55 (69)
Q Consensus 40 if~~a~~~--~p~iifiD 55 (69)
.++..++. .|.+|++|
T Consensus 73 al~~l~~~~~~~dliilD 90 (157)
T 3hzh_A 73 AVIKYKNHYPNIDIVTLX 90 (157)
T ss_dssp HHHHHHHHGGGCCEEEEC
T ss_pred HHHHHHhcCCCCCEEEEe
Confidence 33444444 68899987
No 495
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=22.65 E-value=42 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHHHHHHHHh-cCCeEEEEcccccccc
Q psy3868 37 LRKAFEEADK-NSPSIIFIDELDAIAP 62 (69)
Q Consensus 37 l~~if~~a~~-~~p~iifiDEid~i~~ 62 (69)
+..+.+..++ ..+.+|+||.+..+..
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHH
Confidence 3344445555 6789999999998864
No 496
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=22.62 E-value=97 Score=20.09 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy3868 41 FEEADKNSPSIIFIDEL 57 (69)
Q Consensus 41 f~~a~~~~p~iifiDEi 57 (69)
+.+|-...|.+|++||=
T Consensus 151 lAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHhCCCEEEEECC
Confidence 33444578999999994
No 497
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=22.59 E-value=1.4e+02 Score=18.21 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=24.2
Q ss_pred HHHHHHhCCc-EEEEchhhhhhcccChHHHHHHHHHHHHHhcCCeEEEE
Q psy3868 7 TLCRDSLGAF-FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 54 (69)
Q Consensus 7 ~aia~~~~~~-~~~v~~~~l~~~~~ges~~~l~~if~~a~~~~p~iifi 54 (69)
++.++.+|.+ ...++-.+- .+...+..++.+-+..++.+|.+||-
T Consensus 58 ~~A~~~LGv~~~~~L~~~D~---~~~~~~~~~~~l~~~ir~~~PdvV~t 103 (242)
T 2ixd_A 58 KVAARIMGVKTRLNLAMPDR---GLYMKEEYIREIVKVIRTYKPKLVFA 103 (242)
T ss_dssp HHHHHHHTCCEEEEEEECTT---CCCCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHcCCCeEEECCCCCC---CCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 3445666765 344443332 22223555566666666678887764
No 498
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=22.47 E-value=67 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccc
Q psy3868 33 SESNLRKAFEEADKNSPSIIFIDELD 58 (69)
Q Consensus 33 s~~~l~~if~~a~~~~p~iifiDEid 58 (69)
+...++++|+.+.+..|-|.++|+-+
T Consensus 268 t~eei~~~~~~~y~~~~~V~v~~~~~ 293 (359)
T 1xyg_A 268 RTEDLHQQLKTSYEDEEFVKVLDEGV 293 (359)
T ss_dssp CHHHHHHHHHHHHTTCSSEEECCTTC
T ss_pred CHHHHHHHHHHhhCCCCCEEEcCCCC
Confidence 67889999999999999999998643
No 499
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=22.47 E-value=94 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.2
Q ss_pred hcCC--eEEEEccccc
Q psy3868 46 KNSP--SIIFIDELDA 59 (69)
Q Consensus 46 ~~~p--~iifiDEid~ 59 (69)
...| .+|++||.++
T Consensus 311 ~~~~~~~~LlLDEpt~ 326 (415)
T 4aby_A 311 VLGADTPSVVFDEVDA 326 (415)
T ss_dssp HHCCSSSEEEESSTTT
T ss_pred HhCCCCCEEEEECCCC
Confidence 3567 9999999875
No 500
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=22.43 E-value=66 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.9
Q ss_pred HHhcCCeEEEEccc
Q psy3868 44 ADKNSPSIIFIDEL 57 (69)
Q Consensus 44 a~~~~p~iifiDEi 57 (69)
|-...|.+|++||-
T Consensus 155 AL~~~P~lLLLDEP 168 (372)
T 1v43_A 155 AIVVEPDVLLMDEP 168 (372)
T ss_dssp HHTTCCSEEEEEST
T ss_pred HHhcCCCEEEEcCC
Confidence 33468999999994
Done!